AlfalfaGEDB | Msa0956530

M. sativa cultivar zhongmu-4 / Msa0956530

KEGG: K12592
GO: GO:0000176 GO:0000178 GO:0000459 GO:0000460 GO:0000466 GO:0000467 GO:0000469 GO:0000956 GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003712 GO:0003714 GO:0003723 GO:0003725 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006355 GO:0006364 GO:0006396 GO:0006399 GO:0006401 GO:0006402 GO:0006403 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008298 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016074 GO:0016075 GO:0016078 GO:0016180 GO:0016922 GO:0017053 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030234 GO:0031123 GO:0031125 GO:0031126 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032069 GO:0032991 GO:0033036 GO:0034470 GO:0034472 GO:0034475 GO:0034476 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0035257 GO:0042254 GO:0043144 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043628 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051252 GO:0051253 GO:0051276 GO:0051336 GO:0051427 GO:0051641 GO:0060255 GO:0060700 GO:0065007 GO:0065009 GO:0070013 GO:0070651 GO:0070727 GO:0071025 GO:0071027 GO:0071028 GO:0071029 GO:0071033 GO:0071034 GO:0071035 GO:0071038 GO:0071039 GO:0071042 GO:0071043 GO:0071046 GO:0071047 GO:0071051 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0097159 GO:0098772 GO:0140110 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901917 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905354 GO:1905777 GO:2000112 GO:2000113 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0956530	XP_003588865.1	87.634	186	5	2	1	168	1	186	1.21e-106	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0054700	Msa0956530	0.803225	3.859191e-49	-8.615850e-47
Msa0241640	Msa0956530	0.800511	1.392880e-48	-8.615850e-47
Msa0279790	Msa0956530	0.801283	9.684456e-49	-8.615850e-47
Msa0395960	Msa0956530	0.808278	3.349508e-50	-8.615850e-47
Msa0661160	Msa0956530	0.825399	4.788660e-54	-8.615850e-47
Msa0891740	Msa0956530	0.820905	5.358457e-53	-8.615850e-47
Msa0910990	Msa0956530	0.834652	2.648127e-56	-8.615850e-47
Msa0956530	Msa1359680	0.847312	1.252408e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0956530	MtrunA17_Chr1g0150121	87.634	186	5	2	1	168	1	186	1.11e-110	312
Msa0956530	MtrunA17_Chr3g0136861	33.484	221	89	8	1	167	1	217	1.10e-21	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 62 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTGTGTGCCAAAAGAGAC+TGG	0.467228	6_3:+63936713	Msa0956530:CDS
AATATACCTTCACTCAAATC+TGG	0.367127	6_3:-63936744	None:intergenic
AATGAGCACGTTGAAGGAGT+GGG	0.547922	6_3:-63936210	None:intergenic
AATTGATTCCAAGGAGTACG+TGG	0.643895	6_3:+63938033	Msa0956530:CDS
AATTTAATGTTCTCACCATT+TGG	0.301117	6_3:+63940392	Msa0956530:three_prime_UTR
AATTTGATCGAATTGTTCTT+CGG	0.466862	6_3:-63938014	None:intergenic
AGAACAGTGGCAAGATATGG+TGG	0.633543	6_3:+63937940	Msa0956530:intron
AGAGAGAAAGAGAAAGAATA+TGG	0.380703	6_3:+63936039	Msa0956530:exon
AGAGAGAATGAGCACGTTGA+AGG	0.421510	6_3:-63936216	None:intergenic
AGATGAATGCTTATTGCTTA+TGG	0.285315	6_3:+63940197	Msa0956530:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGAAAGAGAAAGAATA+TGG	+	chr6_3:63936039-63936058	Msa0956530:exon	30.0%
AATATACCTTCACTCAAATC+TGG	-	chr6_3:63936747-63936766	None:intergenic	30.0%
GTTACTTATCCAAACAAACA+GGG	-	chr6_3:63936792-63936811	None:intergenic	30.0%
AGTTACTTATCCAAACAAAC+AGG	-	chr6_3:63936793-63936812	None:intergenic	30.0%
AAAAGGACTTATGATAAGCA+TGG	-	chr6_3:63937044-63937063	None:intergenic	30.0%
TAATAGCTCAACCAATGAAA+AGG	-	chr6_3:63937061-63937080	None:intergenic	30.0%
CATAAAAGAAAGACAGAACT+TGG	-	chr6_3:63937236-63937255	None:intergenic	30.0%
ATAATATCAGTAGTAAGCTG+TGG	+	chr6_3:63937287-63937306	Msa0956530:intron	30.0%
TGAGTCAACGGTATATAAAA+AGG	+	chr6_3:63937394-63937413	Msa0956530:intron	30.0%
ACAAATAAAAAAGGGAATGG+AGG	+	chr6_3:63937427-63937446	Msa0956530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	63935997	63940428	63935997	ID=Msa0956530;Name=Msa0956530
chr6_3	mRNA	63935997	63940428	63935997	ID=Msa0956530-mRNA-1;Parent=Msa0956530;Name=Msa0956530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=61\|0.75\|0.6\|1\|0.5\|0.6\|5\|401\|168
chr6_3	exon	63935997	63936274	63935997	ID=Msa0956530-mRNA-1:exon:12209;Parent=Msa0956530-mRNA-1
chr6_3	exon	63936392	63936401	63936392	ID=Msa0956530-mRNA-1:exon:12210;Parent=Msa0956530-mRNA-1
chr6_3	exon	63936710	63936759	63936710	ID=Msa0956530-mRNA-1:exon:12211;Parent=Msa0956530-mRNA-1
chr6_3	exon	63937942	63938162	63937942	ID=Msa0956530-mRNA-1:exon:12212;Parent=Msa0956530-mRNA-1
chr6_3	exon	63940019	63940428	63940019	ID=Msa0956530-mRNA-1:exon:12213;Parent=Msa0956530-mRNA-1
chr6_3	five_prime_UTR	63935997	63936057	63935997	ID=Msa0956530-mRNA-1:five_prime_utr;Parent=Msa0956530-mRNA-1
chr6_3	CDS	63936058	63936274	63936058	ID=Msa0956530-mRNA-1:cds;Parent=Msa0956530-mRNA-1
chr6_3	CDS	63936392	63936401	63936392	ID=Msa0956530-mRNA-1:cds;Parent=Msa0956530-mRNA-1
chr6_3	CDS	63936710	63936759	63936710	ID=Msa0956530-mRNA-1:cds;Parent=Msa0956530-mRNA-1
chr6_3	CDS	63937942	63938162	63937942	ID=Msa0956530-mRNA-1:cds;Parent=Msa0956530-mRNA-1
chr6_3	CDS	63940019	63940027	63940019	ID=Msa0956530-mRNA-1:cds;Parent=Msa0956530-mRNA-1
chr6_3	three_prime_UTR	63940028	63940428	63940028	ID=Msa0956530-mRNA-1:three_prime_utr;Parent=Msa0956530-mRNA-1

Gene Sequence

>Msa0956530

ATGGTGAAACCAAATGAAACAGAGAACGTGACAGTACAACCAGAATCAACAACAATAGAATCACTCAAACGTGCTTTGTACAACGTTGAACAACTCCAAACTCAATTACCTGAATTCCTTGCTCTATCAGACCCTGATCATCTTGCGACACTCCCACTCCTTCAACGTGCTCATTCTCTCTTCTCCCTCGCCAAACTCACTTCTACCCTTTTTGAATTGAAGTTGAAGTTAAGTGTGTGCCAAAAGAGACTGGAACGACTTCCAGATTTGAGTGAAGAACAGTGGCAAGATATGGTGGAGCAAAAGTTTTATGAGGAGCAGACTGGTCAAAAGAGGAAGTATCCATCTTCCGAAGAACAATTCGATCAAATTGATTCCAAGGAGTACGTGGAGAAATTGCCAGGGGAGGATGTTGTTGGTGGTAGTAGTAGTGGAAGCAGTATCAAGGAAGCAATAATAATTGACTTATCAGATGATGATGACGATGATGATGATGAGTATATGTGA

Protein sequence

>Msa0956530

MVKPNETENVTVQPESTTIESLKRALYNVEQLQTQLPEFLALSDPDHLATLPLLQRAHSLFSLAKLTSTLFELKLKLSVCQKRLERLPDLSEEQWQDMVEQKFYEEQTGQKRKYPSSEEQFDQIDSKEYVEKLPGEDVVGGSSSGSSIKEAIIIDLSDDDDDDDDEYM*