Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054770 | XP_024631051.2 | 97.166 | 494 | 13 | 1 | 1 | 493 | 1 | 494 | 0.0 | 974 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054770 | sp|Q9LEV7|FBT6_ARATH | 59.006 | 483 | 198 | 0 | 5 | 487 | 21 | 503 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054770 | A0A1S2Y5D5 | 86.709 | 474 | 62 | 1 | 21 | 493 | 49 | 522 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006060 | Msa0054770 | 0.823854 | 1.106734e-53 | -8.615850e-47 |
| Msa0054770 | Msa0713060 | 0.803589 | 3.243169e-49 | -8.615850e-47 |
| Msa0054770 | Msa1199870 | 0.817714 | 2.857969e-52 | -8.615850e-47 |
| Msa0054770 | Msa1252810 | 0.805862 | 1.087368e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054770 | MtrunA17_Chr1g0150041 | 79.872 | 313 | 27 | 3 | 1 | 312 | 1 | 278 | 7.00e-170 | 480 |
| Msa0054770 | MtrunA17_Chr1g0150001 | 47.379 | 496 | 248 | 4 | 2 | 487 | 5 | 497 | 1.20e-157 | 457 |
| Msa0054770 | MtrunA17_Chr1g0150031 | 98.485 | 198 | 3 | 0 | 296 | 493 | 2 | 199 | 4.28e-138 | 395 |
| Msa0054770 | MtrunA17_Chr1g0205221 | 26.517 | 445 | 306 | 8 | 1 | 439 | 80 | 509 | 2.18e-48 | 174 |
| Msa0054770 | MtrunA17_Chr3g0098661 | 25.458 | 491 | 299 | 9 | 28 | 456 | 3 | 488 | 3.43e-42 | 157 |
| Msa0054770 | MtrunA17_Chr2g0293351 | 24.257 | 404 | 284 | 7 | 51 | 440 | 27 | 422 | 1.04e-28 | 118 |
| Msa0054770 | MtrunA17_Chr3g0079271 | 25.679 | 405 | 280 | 9 | 62 | 455 | 120 | 514 | 5.07e-23 | 102 |
| Msa0054770 | MtrunA17_Chr2g0293371 | 24.000 | 300 | 209 | 4 | 151 | 440 | 42 | 332 | 1.99e-16 | 80.9 |
| Msa0054770 | MtrunA17_Chr2g0293361 | 28.169 | 142 | 102 | 0 | 299 | 440 | 86 | 227 | 3.53e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054770 | AT5G10820.1 | 59.006 | 483 | 198 | 0 | 5 | 487 | 21 | 503 | 0.0 | 586 |
| Msa0054770 | AT1G79710.2 | 47.216 | 485 | 252 | 2 | 4 | 487 | 11 | 492 | 1.09e-164 | 475 |
| Msa0054770 | AT1G79710.1 | 47.216 | 485 | 252 | 2 | 4 | 487 | 11 | 492 | 1.09e-164 | 475 |
| Msa0054770 | AT5G25050.1 | 45.380 | 487 | 259 | 2 | 5 | 487 | 9 | 492 | 3.93e-155 | 451 |
| Msa0054770 | AT5G25040.4 | 44.353 | 487 | 257 | 4 | 5 | 487 | 9 | 485 | 4.16e-141 | 415 |
| Msa0054770 | AT5G25040.2 | 42.188 | 512 | 257 | 5 | 5 | 487 | 9 | 510 | 2.06e-135 | 401 |
| Msa0054770 | AT1G79710.3 | 46.292 | 391 | 206 | 2 | 4 | 393 | 11 | 398 | 1.93e-127 | 377 |
| Msa0054770 | AT5G25040.1 | 44.731 | 427 | 226 | 3 | 5 | 430 | 9 | 426 | 5.69e-125 | 372 |
| Msa0054770 | AT5G25040.3 | 43.085 | 376 | 207 | 2 | 5 | 379 | 9 | 378 | 1.54e-105 | 320 |
| Msa0054770 | AT5G25040.5 | 47.093 | 344 | 169 | 3 | 147 | 487 | 5 | 338 | 4.93e-104 | 315 |
| Msa0054770 | AT2G32040.2 | 29.545 | 396 | 263 | 7 | 53 | 439 | 6 | 394 | 1.52e-48 | 173 |
| Msa0054770 | AT2G32040.1 | 29.369 | 412 | 273 | 9 | 37 | 439 | 123 | 525 | 1.82e-48 | 176 |
| Msa0054770 | AT5G54860.1 | 25.103 | 486 | 302 | 8 | 28 | 456 | 3 | 483 | 2.79e-43 | 160 |
| Msa0054770 | AT2G33280.1 | 24.818 | 411 | 284 | 9 | 62 | 459 | 103 | 501 | 7.18e-23 | 102 |
| Msa0054770 | AT2G33280.3 | 25.250 | 400 | 274 | 9 | 73 | 459 | 6 | 393 | 1.98e-22 | 100 |
| Msa0054770 | AT1G04570.1 | 25.995 | 427 | 299 | 10 | 44 | 462 | 86 | 503 | 2.76e-22 | 100 |
| Msa0054770 | AT1G04570.2 | 25.652 | 230 | 162 | 4 | 236 | 462 | 132 | 355 | 2.97e-17 | 84.0 |
| Msa0054770 | AT1G64890.1 | 22.454 | 383 | 286 | 6 | 53 | 431 | 30 | 405 | 1.00e-15 | 79.7 |
| Msa0054770 | AT2G33280.2 | 25.446 | 224 | 155 | 5 | 239 | 459 | 105 | 319 | 2.12e-14 | 75.1 |
Find 110 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCCGTTGGAATTTGAAAAT+TGG | 0.161513 | 1_2:+9481861 | Msa0054770:CDS |
| CATGGATTCTTAAACCTATC+TGG | 0.221992 | 1_2:+9479400 | Msa0054770:CDS |
| TCTGGTTCTGGTGCTCTTCT+TGG | 0.244927 | 1_2:+9479681 | Msa0054770:CDS |
| TTAGGGGTCGCTTGGTCTTA+TGG | 0.248348 | 1_2:+9480389 | Msa0054770:intron |
| GGTGCAGTGGCTTCAATAAT+AGG | 0.259173 | 1_2:+9481732 | Msa0054770:CDS |
| TAGATTTGTTACACTTGTTT+TGG | 0.260439 | 1_2:+9482145 | Msa0054770:CDS |
| GGTTTCTTTGTTCATCATCT+TGG | 0.287418 | 1_2:+9479717 | Msa0054770:CDS |
| TCCTGCTTTGACATTTGTGC+TGG | 0.291747 | 1_2:+9480419 | Msa0054770:CDS |
| AACTAGTCACTGATTACTAT+TGG | 0.295416 | 1_2:+9479316 | Msa0054770:CDS |
| ACTCCAGCAACGACAAAATA+AGG | 0.315707 | 1_2:-9479468 | None:intergenic |
| ATTTCTCTAAACTTCAGTTT+TGG | 0.318615 | 1_2:-9482282 | None:intergenic |
| TTGGTGGCCTTATATCAAAA+TGG | 0.333437 | 1_2:+9482036 | Msa0054770:CDS |
| CTGCTATGAATGTTGGGTTT+AGG | 0.335500 | 1_2:-9479242 | None:intergenic |
| TAAGAATCACAGGCAAAATA+AGG | 0.338692 | 1_2:+9481925 | Msa0054770:CDS |
| GTGCAGTGGCTTCAATAATA+GGG | 0.341061 | 1_2:+9481733 | Msa0054770:CDS |
| ATATGCAATATCAGGTCTAT+TGG | 0.355056 | 1_2:+9481824 | Msa0054770:CDS |
| CCACACAAACTCTGCAAATC+AGG | 0.355919 | 1_2:-9479651 | None:intergenic |
| GCAGGAATATTCCTAGTATA+TGG | 0.356591 | 1_2:+9479261 | Msa0054770:CDS |
| TGTTCATCATCTTGGTCCTC+AGG | 0.362448 | 1_2:+9479725 | Msa0054770:CDS |
| AATGTTCCTTCAATTCCTAA+TGG | 0.382788 | 1_2:-9481984 | None:intergenic |
| CTCCGACGATATCCCATTAC+TGG | 0.386877 | 1_2:-9479444 | None:intergenic |
| CAACTCCTATATGCAATATC+AGG | 0.388681 | 1_2:+9481816 | Msa0054770:CDS |
| GCCATTCTGTTGGTTCTGTT+AGG | 0.408858 | 1_2:-9479200 | None:intergenic |
| TGGTGGCCTTATATCAAAAT+GGG | 0.409984 | 1_2:+9482037 | Msa0054770:CDS |
| TTTGTCGTTGCTGGAGTTGT+TGG | 0.416881 | 1_2:+9479474 | Msa0054770:CDS |
| AGGAATAGTATTGAGGTTCC+AGG | 0.421524 | 1_2:+9479621 | Msa0054770:CDS |
| ATATTCCTGCTATGAATGTT+GGG | 0.421667 | 1_2:-9479248 | None:intergenic |
| AATATTCCTGCTATGAATGT+TGG | 0.422576 | 1_2:-9479249 | None:intergenic |
| CCTGCTTTGACATTTGTGCT+GGG | 0.424650 | 1_2:+9480420 | Msa0054770:CDS |
| ACGTAGAGTTGAACTGTTGA+AGG | 0.432809 | 1_2:-9479360 | None:intergenic |
| TCCTAATGTTGGGCCTTATG+AGG | 0.433740 | 1_2:+9482178 | Msa0054770:CDS |
| TCCTCATAAGGCCCAACATT+AGG | 0.441850 | 1_2:-9482179 | None:intergenic |
| TTTGTGCTTAGTACCATCAT+AGG | 0.457654 | 1_2:-9481954 | None:intergenic |
| CTTGGCCTATACCATATACT+AGG | 0.458394 | 1_2:-9479272 | None:intergenic |
| AGCACAAAACTATGTCCATT+AGG | 0.463739 | 1_2:+9481969 | Msa0054770:CDS |
| CTATGTCCATTAGGAATTGA+AGG | 0.463884 | 1_2:+9481978 | Msa0054770:CDS |
| ATGGATTCTTAAACCTATCT+GGG | 0.464122 | 1_2:+9479401 | Msa0054770:CDS |
| GTTGGTATAATCTATGCAAT+TGG | 0.464940 | 1_2:+9481711 | Msa0054770:CDS |
| ATATTCCTAGTATATGGTAT+AGG | 0.475760 | 1_2:+9479267 | Msa0054770:CDS |
| GGAGTTGTGCATAGAATACT+AGG | 0.477649 | 1_2:-9481800 | None:intergenic |
| TTGAACATGCAGGAGTTTGT+TGG | 0.481486 | 1_2:+9481693 | Msa0054770:intron |
| GAAGGAATCAACTCCTCATA+AGG | 0.481908 | 1_2:-9482191 | None:intergenic |
| AGGTGAGGTGAGTGTGGTTG+CGG | 0.485151 | 1_2:+9479527 | Msa0054770:CDS |
| CTTCTTGGTTATCTTGCTAG+TGG | 0.487565 | 1_2:+9479696 | Msa0054770:CDS |
| CCTGATTTGCAGAGTTTGTG+TGG | 0.489748 | 1_2:+9479651 | Msa0054770:CDS |
| TGAGGAGTTGATTCCTTCTG+AGG | 0.491264 | 1_2:+9482196 | Msa0054770:CDS |
| CTGATTTGCAGAGTTTGTGT+GGG | 0.494014 | 1_2:+9479652 | Msa0054770:CDS |
| ATCTATGAAAAGAGAACCAC+TGG | 0.501257 | 1_2:+9480450 | Msa0054770:CDS |
| GGTATAGGCCAAGGCTTCAC+AGG | 0.501541 | 1_2:+9479282 | Msa0054770:CDS |
| AGTCGGCCCTGCATTCTCTC+AGG | 0.502838 | 1_2:+9480809 | Msa0054770:CDS |
| AATCAGTTCTAGTAACATGA+AGG | 0.503411 | 1_2:-9482082 | None:intergenic |
| CTATTGATGCTTGTATTGCA+AGG | 0.511611 | 1_2:+9479601 | Msa0054770:CDS |
| ACTTAATCTTCATTCTCCGT+TGG | 0.512262 | 1_2:+9481847 | Msa0054770:CDS |
| CTTATATCAAAATGGGGTGG+AGG | 0.513361 | 1_2:+9482044 | Msa0054770:CDS |
| AGCATTGATAGCCATTCTGT+TGG | 0.514790 | 1_2:-9479210 | None:intergenic |
| GTCTGCTACGATTGTTGCTG+TGG | 0.514938 | 1_2:+9479503 | Msa0054770:CDS |
| CTCATTTCACAAACCTCAGA+AGG | 0.515142 | 1_2:-9482209 | None:intergenic |
| TATTGCAAGGAATAGTATTG+AGG | 0.520684 | 1_2:+9479614 | Msa0054770:CDS |
| TGAATCTTGTTGTGTTGACA+TGG | 0.524137 | 1_2:-9479133 | None:intergenic |
| ATAGACCTGATATTGCATAT+AGG | 0.528384 | 1_2:-9481821 | None:intergenic |
| AATAAGGTGGATGCCTATGA+TGG | 0.535562 | 1_2:+9481941 | Msa0054770:CDS |
| AGAGTTGAACTGTTGAAGGT+TGG | 0.538340 | 1_2:-9479356 | None:intergenic |
| CAGATAGGTTTAAGAATCCA+TGG | 0.538409 | 1_2:-9479399 | None:intergenic |
| CTAGTATATGGTATAGGCCA+AGG | 0.539645 | 1_2:+9479273 | Msa0054770:CDS |
| AGAGTGAGCCTGTGAAGCCT+TGG | 0.539998 | 1_2:-9479290 | None:intergenic |
| CCCAGCACAAATGTCAAAGC+AGG | 0.540822 | 1_2:-9480420 | None:intergenic |
| TGCAAATCAGGAGCCAACCC+TGG | 0.542040 | 1_2:-9479639 | None:intergenic |
| TCGGTTAGAATGCCCCAGAT+AGG | 0.542383 | 1_2:-9479414 | None:intergenic |
| ATGTGTATTGATAGCATTGG+TGG | 0.544527 | 1_2:+9482020 | Msa0054770:CDS |
| CTAAACCCAACATTCATAGC+AGG | 0.546989 | 1_2:+9479243 | Msa0054770:CDS |
| AATGTAGGAACGACAATTCG+AGG | 0.547125 | 1_2:+9480669 | Msa0054770:CDS |
| CTTGCATAATGAAAAGAAGA+AGG | 0.548422 | 1_2:+9480473 | Msa0054770:CDS |
| GATGCTGCTATAAGAATCAC+AGG | 0.548431 | 1_2:+9481915 | Msa0054770:CDS |
| CAATAAAGTGTCCTCAAGCA+TGG | 0.550340 | 1_2:+9480703 | Msa0054770:CDS |
| AGAGGTACCTGAGAGAATGC+AGG | 0.554272 | 1_2:-9480816 | None:intergenic |
| CTTAATGTAACCACTCATGA+AGG | 0.563754 | 1_2:+9480759 | Msa0054770:CDS |
| TTAAAAGAACAGCCAACCAT+AGG | 0.564884 | 1_2:-9482112 | None:intergenic |
| GAAAGGAACATGTAAAGAGA+TGG | 0.565527 | 1_2:-9480729 | None:intergenic |
| TAGTATTGAGGTTCCAGGGT+TGG | 0.566971 | 1_2:+9479626 | Msa0054770:CDS |
| TGTGGGAGGTGAGGTGAGTG+TGG | 0.567101 | 1_2:+9479521 | Msa0054770:CDS |
| TCCTAACAGAACCAACAGAA+TGG | 0.568379 | 1_2:+9479199 | Msa0054770:CDS |
| CGTTGCTGGAGTTGTTGGAA+CGG | 0.568419 | 1_2:+9479479 | Msa0054770:CDS |
| TCTGCTACGATTGTTGCTGT+GGG | 0.569735 | 1_2:+9479504 | Msa0054770:CDS |
| GAGTGGTTACATTAAGAGCA+AGG | 0.572992 | 1_2:-9480752 | None:intergenic |
| TGGTATACTGATTCAAAAGT+CGG | 0.575373 | 1_2:+9480792 | Msa0054770:CDS |
| TTATATCAAAATGGGGTGGA+GGG | 0.579386 | 1_2:+9482045 | Msa0054770:CDS |
| ATCAGTTCTAGTAACATGAA+GGG | 0.581853 | 1_2:-9482081 | None:intergenic |
| TGATATTGATGAAGAGACCT+TGG | 0.583427 | 1_2:+9482241 | Msa0054770:CDS |
| AGAGATGGCTTCCATGCTTG+AGG | 0.584725 | 1_2:-9480714 | None:intergenic |
| TGCAGTGGCTTCAATAATAG+GGG | 0.585973 | 1_2:+9481734 | Msa0054770:CDS |
| AATCTATGCAATTGGTGCAG+TGG | 0.592181 | 1_2:+9481719 | Msa0054770:CDS |
| TTAATGTGTATTGATAGCAT+TGG | 0.600486 | 1_2:+9482017 | Msa0054770:CDS |
| TTACATTAAGAGCAAGGGAA+AGG | 0.602871 | 1_2:-9480746 | None:intergenic |
| GGAATAGTATTGAGGTTCCA+GGG | 0.603259 | 1_2:+9479622 | Msa0054770:CDS |
| GCTACGATTGTTGCTGTGGG+AGG | 0.603973 | 1_2:+9479507 | Msa0054770:CDS |
| AGTGGTTACATTAAGAGCAA+GGG | 0.607736 | 1_2:-9480751 | None:intergenic |
| TTCCAGTAATGGGATATCGT+CGG | 0.608018 | 1_2:+9479442 | Msa0054770:CDS |
| GAATCACAGGCAAAATAAGG+TGG | 0.610591 | 1_2:+9481928 | Msa0054770:CDS |
| TCCCATTACTGGAAAAGCGT+CGG | 0.613298 | 1_2:-9479433 | None:intergenic |
| TCTGTTAGGATTGATAACAA+TGG | 0.623787 | 1_2:-9479186 | None:intergenic |
| TAGGAATATACTTCATACCA+TGG | 0.624013 | 1_2:+9479382 | Msa0054770:CDS |
| ATTTAAAGGAACAAGCTCCA+AGG | 0.627727 | 1_2:-9482258 | None:intergenic |
| GAGGTACCTGAGAGAATGCA+GGG | 0.635587 | 1_2:-9480815 | None:intergenic |
| GGCCTTATATCAAAATGGGG+TGG | 0.639767 | 1_2:+9482041 | Msa0054770:CDS |
| GATTGTTGCTGTGGGAGGTG+AGG | 0.648427 | 1_2:+9479512 | Msa0054770:CDS |
| GGGGTCGCTTGGTCTTATGG+CGG | 0.651608 | 1_2:+9480392 | Msa0054770:intron |
| CAGTAATGGGATATCGTCGG+AGG | 0.679956 | 1_2:+9479445 | Msa0054770:CDS |
| TCAACAGTTCAACTCTACGT+AGG | 0.687400 | 1_2:+9479363 | Msa0054770:CDS |
| GGTGGCCTTATATCAAAATG+GGG | 0.688936 | 1_2:+9482038 | Msa0054770:CDS |
| TGGATTCTTAAACCTATCTG+GGG | 0.710158 | 1_2:+9479402 | Msa0054770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATAAATAAAATGTTA+AGG | + | chr1_2:9479832-9479851 | Msa0054770:intron | 10.0% |
| !! | TACTTAATTAATAAACATAT+TGG | - | chr1_2:9480299-9480318 | None:intergenic | 10.0% |
| !! | AGAATTAAACATACAAAATA+AGG | - | chr1_2:9479769-9479788 | None:intergenic | 15.0% |
| !!! | CTGATTAAATACATTTTTTA+GGG | + | chr1_2:9480636-9480655 | Msa0054770:intron | 15.0% |
| !!! | TGATTAAATACATTTTTTAG+GGG | + | chr1_2:9480637-9480656 | Msa0054770:intron | 15.0% |
| !! | TAACAAAAGATAAATAAAGT+CGG | + | chr1_2:9481112-9481131 | Msa0054770:intron | 15.0% |
| !!! | GATCATGTTAATCATTTTTA+AGG | + | chr1_2:9480078-9480097 | Msa0054770:intron | 20.0% |
| !!! | ATTTAGTTGATAAAATCTGA+AGG | - | chr1_2:9480215-9480234 | None:intergenic | 20.0% |
| !!! | GCTGATTAAATACATTTTTT+AGG | + | chr1_2:9480635-9480654 | Msa0054770:intron | 20.0% |
| !!! | GATTAAATACATTTTTTAGG+GGG | + | chr1_2:9480638-9480657 | Msa0054770:intron | 20.0% |
| !! | TTGAATACAAATTGTAAGTT+CGG | - | chr1_2:9480933-9480952 | None:intergenic | 20.0% |
| !! | AATAAGGTGAAAACAAATTA+TGG | + | chr1_2:9481192-9481211 | Msa0054770:intron | 20.0% |
| !!! | CTTTTAACATATAAGTACTT+AGG | - | chr1_2:9481580-9481599 | None:intergenic | 20.0% |
| !!! | AACTCTTTAAGAAAAAGAAA+TGG | - | chr1_2:9481660-9481679 | None:intergenic | 20.0% |
| ! | ATATTCCTAGTATATGGTAT+AGG | + | chr1_2:9479267-9479286 | Msa0054770:CDS | 25.0% |
| ! | AAAATAGAAAAACAAACCTG+AGG | - | chr1_2:9479744-9479763 | None:intergenic | 25.0% |
| !! | TTACATTTTCCTCTTCAAAA+AGG | + | chr1_2:9479900-9479919 | Msa0054770:intron | 25.0% |
| !!! | GAATCATGCTTTTAGTTTTT+AGG | + | chr1_2:9479989-9480008 | Msa0054770:intron | 25.0% |
| !!! | ATGCTTTTAGTTTTTAGGAT+TGG | + | chr1_2:9479994-9480013 | Msa0054770:intron | 25.0% |
| !! | ATTGAAGGTTTTCAATTTCA+TGG | + | chr1_2:9480141-9480160 | Msa0054770:intron | 25.0% |
| !!! | ATGCTTCTGTTGTTATTTTA+GGG | + | chr1_2:9480372-9480391 | Msa0054770:intron | 25.0% |
| ! | ATAATGAAAAGAAGAAGGTT+AGG | + | chr1_2:9480478-9480497 | Msa0054770:intron | 25.0% |
| ! | AATCAGTATACCAGTAAAAA+TGG | - | chr1_2:9480785-9480804 | None:intergenic | 25.0% |
| ! | TTGTATTCAATTGCTTAGAT+TGG | + | chr1_2:9480943-9480962 | Msa0054770:intron | 25.0% |
| ! | ATTCATCTGCAAACAAAATA+CGG | - | chr1_2:9481016-9481035 | None:intergenic | 25.0% |
| ! | CTGGAAAACTTATAGAAATA+AGG | + | chr1_2:9481176-9481195 | Msa0054770:intron | 25.0% |
| ! | TTGTATGCAATTAATTGCTT+AGG | + | chr1_2:9481319-9481338 | Msa0054770:intron | 25.0% |
| ! | GTCATCTATAAACAACATAT+GGG | - | chr1_2:9481395-9481414 | None:intergenic | 25.0% |
| ! | AGTCATCTATAAACAACATA+TGG | - | chr1_2:9481396-9481415 | None:intergenic | 25.0% |
| !! | TTTTCACTGAAAACATCTTA+TGG | - | chr1_2:9481515-9481534 | None:intergenic | 25.0% |
| ! | ACATATAAGTACTTAGGTAT+AGG | - | chr1_2:9481574-9481593 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTAGATACTTG+TGG | - | chr1_2:9481770-9481789 | None:intergenic | 25.0% |
| !! | TTCCAATTTTCAAATTCCAA+CGG | - | chr1_2:9481866-9481885 | None:intergenic | 25.0% |
| !! | TTAATGTGTATTGATAGCAT+TGG | + | chr1_2:9482017-9482036 | Msa0054770:CDS | 25.0% |
| !!! | TAGATTTGTTACACTTGTTT+TGG | + | chr1_2:9482145-9482164 | Msa0054770:CDS | 25.0% |
| !! | TTTTTCTTGTTCCTAATGTT+GGG | + | chr1_2:9482168-9482187 | Msa0054770:CDS | 25.0% |
| ! | TCTGTTAGGATTGATAACAA+TGG | - | chr1_2:9479189-9479208 | None:intergenic | 30.0% |
| ATATTCCTGCTATGAATGTT+GGG | - | chr1_2:9479251-9479270 | None:intergenic | 30.0% | |
| AATATTCCTGCTATGAATGT+TGG | - | chr1_2:9479252-9479271 | None:intergenic | 30.0% | |
| ! | AACTAGTCACTGATTACTAT+TGG | + | chr1_2:9479316-9479335 | Msa0054770:CDS | 30.0% |
| TAGGAATATACTTCATACCA+TGG | + | chr1_2:9479382-9479401 | Msa0054770:CDS | 30.0% | |
| ATGGATTCTTAAACCTATCT+GGG | + | chr1_2:9479401-9479420 | Msa0054770:CDS | 30.0% | |
| TATTGCAAGGAATAGTATTG+AGG | + | chr1_2:9479614-9479633 | Msa0054770:CDS | 30.0% | |
| CTCATATCTTACAAGAACAT+TGG | - | chr1_2:9479951-9479970 | None:intergenic | 30.0% | |
| !!! | GATGCTTCTGTTGTTATTTT+AGG | + | chr1_2:9480371-9480390 | Msa0054770:intron | 30.0% |
| !!! | TGCTTCTGTTGTTATTTTAG+GGG | + | chr1_2:9480373-9480392 | Msa0054770:intron | 30.0% |
| CTTGCATAATGAAAAGAAGA+AGG | + | chr1_2:9480473-9480492 | Msa0054770:CDS | 30.0% | |
| TGATTTCACTTTGTGCAAAT+AGG | - | chr1_2:9480535-9480554 | None:intergenic | 30.0% | |
| ! | TTAGTTAGTTAGTGCTGAAT+TGG | + | chr1_2:9480613-9480632 | Msa0054770:intron | 30.0% |
| !! | TGGTATACTGATTCAAAAGT+CGG | + | chr1_2:9480792-9480811 | Msa0054770:CDS | 30.0% |
| TTCATCTGCAAACAAAATAC+GGG | - | chr1_2:9481015-9481034 | None:intergenic | 30.0% | |
| ! | ATTGAGGTGTTTATCTAAAC+AGG | - | chr1_2:9481044-9481063 | None:intergenic | 30.0% |
| AAGTGATTAGAGCTTAATTG+AGG | - | chr1_2:9481060-9481079 | None:intergenic | 30.0% | |
| CTAATGAAATTGCTGAATAC+AGG | + | chr1_2:9481359-9481378 | Msa0054770:intron | 30.0% | |
| ! | TCTTTTGACATAAACACTTG+TGG | + | chr1_2:9481449-9481468 | Msa0054770:intron | 30.0% |
| !!! | TCACTTTTTTAGTCTCTGTT+TGG | - | chr1_2:9481623-9481642 | None:intergenic | 30.0% |
| GTTGGTATAATCTATGCAAT+TGG | + | chr1_2:9481711-9481730 | Msa0054770:CDS | 30.0% | |
| ATAGACCTGATATTGCATAT+AGG | - | chr1_2:9481824-9481843 | None:intergenic | 30.0% | |
| ATATGCAATATCAGGTCTAT+TGG | + | chr1_2:9481824-9481843 | Msa0054770:CDS | 30.0% | |
| ATGACAACAAAAAAGTAGTC+AGG | - | chr1_2:9481891-9481910 | None:intergenic | 30.0% | |
| TAAGAATCACAGGCAAAATA+AGG | + | chr1_2:9481925-9481944 | Msa0054770:CDS | 30.0% | |
| AATGTTCCTTCAATTCCTAA+TGG | - | chr1_2:9481987-9482006 | None:intergenic | 30.0% | |
| ! | ATCAGTTCTAGTAACATGAA+GGG | - | chr1_2:9482084-9482103 | None:intergenic | 30.0% |
| ! | AATCAGTTCTAGTAACATGA+AGG | - | chr1_2:9482085-9482104 | None:intergenic | 30.0% |
| !! | GAACTGATTTTACTAACCTA+TGG | + | chr1_2:9482096-9482115 | Msa0054770:CDS | 30.0% |
| ! | TGATTTTACTAACCTATGGT+TGG | + | chr1_2:9482100-9482119 | Msa0054770:CDS | 30.0% |
| ! | GTTTTTCTTGTTCCTAATGT+TGG | + | chr1_2:9482167-9482186 | Msa0054770:CDS | 30.0% |
| !! | ACTTCAGTTTTGGCATTTAA+AGG | - | chr1_2:9482275-9482294 | None:intergenic | 30.0% |
| GCAGGAATATTCCTAGTATA+TGG | + | chr1_2:9479261-9479280 | Msa0054770:CDS | 35.0% | |
| CAGATAGGTTTAAGAATCCA+TGG | - | chr1_2:9479402-9479421 | None:intergenic | 35.0% | |
| CATGGATTCTTAAACCTATC+TGG | + | chr1_2:9479400-9479419 | Msa0054770:CDS | 35.0% | |
| TGGATTCTTAAACCTATCTG+GGG | + | chr1_2:9479402-9479421 | Msa0054770:CDS | 35.0% | |
| CTATTGATGCTTGTATTGCA+AGG | + | chr1_2:9479601-9479620 | Msa0054770:CDS | 35.0% | |
| GGTTTCTTTGTTCATCATCT+TGG | + | chr1_2:9479717-9479736 | Msa0054770:CDS | 35.0% | |
| !! | ATACGAGAACCTTTTTGAAG+AGG | - | chr1_2:9479912-9479931 | None:intergenic | 35.0% |
| CTTCAAAAAGGTTCTCGTAT+TGG | + | chr1_2:9479912-9479931 | Msa0054770:intron | 35.0% | |
| !! | AGTTCTGAGATTGTAGAGAA+TGG | + | chr1_2:9480112-9480131 | Msa0054770:intron | 35.0% |
| AACTGAAAGAACTGCTGTAA+AGG | - | chr1_2:9480261-9480280 | None:intergenic | 35.0% | |
| ATCTATGAAAAGAGAACCAC+TGG | + | chr1_2:9480450-9480469 | Msa0054770:CDS | 35.0% | |
| GTGCAAATAGGCTTATGATA+TGG | - | chr1_2:9480523-9480542 | None:intergenic | 35.0% | |
| !!! | ATACATTTTTTAGGGGGTAG+TGG | + | chr1_2:9480644-9480663 | Msa0054770:intron | 35.0% |
| GAAAGGAACATGTAAAGAGA+TGG | - | chr1_2:9480732-9480751 | None:intergenic | 35.0% | |
| TTACATTAAGAGCAAGGGAA+AGG | - | chr1_2:9480749-9480768 | None:intergenic | 35.0% | |
| AGTGGTTACATTAAGAGCAA+GGG | - | chr1_2:9480754-9480773 | None:intergenic | 35.0% | |
| CTTAATGTAACCACTCATGA+AGG | + | chr1_2:9480759-9480778 | Msa0054770:CDS | 35.0% | |
| TCAATTTCCCGAAATATGAG+AGG | - | chr1_2:9480837-9480856 | None:intergenic | 35.0% | |
| ! | AGTCACTACATTTGAGATCA+CGG | + | chr1_2:9480872-9480891 | Msa0054770:intron | 35.0% |
| ! | ACATTTGAGATCACGGTTAT+CGG | + | chr1_2:9480879-9480898 | Msa0054770:intron | 35.0% |
| !!! | GCTTTTTTCATAAGCTCTTC+TGG | + | chr1_2:9481157-9481176 | Msa0054770:intron | 35.0% |
| AGCTATTGATGAACATCAGA+CGG | + | chr1_2:9481271-9481290 | Msa0054770:intron | 35.0% | |
| TAGATGACTAATGACCTGTT+TGG | + | chr1_2:9481407-9481426 | Msa0054770:intron | 35.0% | |
| TCAAACAAGTCAATCCAAAC+AGG | - | chr1_2:9481424-9481443 | None:intergenic | 35.0% | |
| AACACTTGTGGAAACTGTTT+AGG | + | chr1_2:9481461-9481480 | Msa0054770:intron | 35.0% | |
| CTGAAAACATCTTATGGACA+TGG | - | chr1_2:9481509-9481528 | None:intergenic | 35.0% | |
| CAACTCCTATATGCAATATC+AGG | + | chr1_2:9481816-9481835 | Msa0054770:CDS | 35.0% | |
| ACTTAATCTTCATTCTCCGT+TGG | + | chr1_2:9481847-9481866 | Msa0054770:CDS | 35.0% | |
| CTCCGTTGGAATTTGAAAAT+TGG | + | chr1_2:9481861-9481880 | Msa0054770:CDS | 35.0% | |
| TTTGTGCTTAGTACCATCAT+AGG | - | chr1_2:9481957-9481976 | None:intergenic | 35.0% | |
| AGCACAAAACTATGTCCATT+AGG | + | chr1_2:9481969-9481988 | Msa0054770:CDS | 35.0% | |
| CTATGTCCATTAGGAATTGA+AGG | + | chr1_2:9481978-9481997 | Msa0054770:CDS | 35.0% | |
| ! | ATGTGTATTGATAGCATTGG+TGG | + | chr1_2:9482020-9482039 | Msa0054770:CDS | 35.0% |
| !! | TTGGTGGCCTTATATCAAAA+TGG | + | chr1_2:9482036-9482055 | Msa0054770:CDS | 35.0% |
| !! | TGGTGGCCTTATATCAAAAT+GGG | + | chr1_2:9482037-9482056 | Msa0054770:CDS | 35.0% |
| TTATATCAAAATGGGGTGGA+GGG | + | chr1_2:9482045-9482064 | Msa0054770:CDS | 35.0% | |
| TTAAAAGAACAGCCAACCAT+AGG | - | chr1_2:9482115-9482134 | None:intergenic | 35.0% | |
| TGATATTGATGAAGAGACCT+TGG | + | chr1_2:9482241-9482260 | Msa0054770:CDS | 35.0% | |
| ATTTAAAGGAACAAGCTCCA+AGG | - | chr1_2:9482261-9482280 | None:intergenic | 35.0% | |
| TCCTAACAGAACCAACAGAA+TGG | + | chr1_2:9479199-9479218 | Msa0054770:CDS | 40.0% | |
| !! | AGCATTGATAGCCATTCTGT+TGG | - | chr1_2:9479213-9479232 | None:intergenic | 40.0% |
| CTGCTATGAATGTTGGGTTT+AGG | - | chr1_2:9479245-9479264 | None:intergenic | 40.0% | |
| CTAAACCCAACATTCATAGC+AGG | + | chr1_2:9479243-9479262 | Msa0054770:CDS | 40.0% | |
| CTTGGCCTATACCATATACT+AGG | - | chr1_2:9479275-9479294 | None:intergenic | 40.0% | |
| CTAGTATATGGTATAGGCCA+AGG | + | chr1_2:9479273-9479292 | Msa0054770:CDS | 40.0% | |
| AGAGTTGAACTGTTGAAGGT+TGG | - | chr1_2:9479359-9479378 | None:intergenic | 40.0% | |
| ACGTAGAGTTGAACTGTTGA+AGG | - | chr1_2:9479363-9479382 | None:intergenic | 40.0% | |
| TCAACAGTTCAACTCTACGT+AGG | + | chr1_2:9479363-9479382 | Msa0054770:CDS | 40.0% | |
| ! | TTCCAGTAATGGGATATCGT+CGG | + | chr1_2:9479442-9479461 | Msa0054770:CDS | 40.0% |
| ACTCCAGCAACGACAAAATA+AGG | - | chr1_2:9479471-9479490 | None:intergenic | 40.0% | |
| ! | AGGAATAGTATTGAGGTTCC+AGG | + | chr1_2:9479621-9479640 | Msa0054770:CDS | 40.0% |
| ! | GGAATAGTATTGAGGTTCCA+GGG | + | chr1_2:9479622-9479641 | Msa0054770:CDS | 40.0% |
| ! | CTGATTTGCAGAGTTTGTGT+GGG | + | chr1_2:9479652-9479671 | Msa0054770:CDS | 40.0% |
| !!! | AGTTTGTGTGGGTTTTGTTC+TGG | + | chr1_2:9479663-9479682 | Msa0054770:CDS | 40.0% |
| CTTCTTGGTTATCTTGCTAG+TGG | + | chr1_2:9479696-9479715 | Msa0054770:CDS | 40.0% | |
| CAAAAAGGTTCTCGTATTGG+TGG | + | chr1_2:9479915-9479934 | Msa0054770:intron | 40.0% | |
| AGGATTGGAGTTGAGCAATT+TGG | + | chr1_2:9480009-9480028 | Msa0054770:intron | 40.0% | |
| TTGGAGTTGAGCAATTTGGT+TGG | + | chr1_2:9480013-9480032 | Msa0054770:intron | 40.0% | |
| !! | AGAGAATGGACTGTGATTGA+AGG | + | chr1_2:9480126-9480145 | Msa0054770:intron | 40.0% |
| ACACTGTAATGTCTGATGAG+TGG | + | chr1_2:9480348-9480367 | Msa0054770:intron | 40.0% | |
| CACTGTAATGTCTGATGAGT+GGG | + | chr1_2:9480349-9480368 | Msa0054770:intron | 40.0% | |
| !!! | TTGTTATTTTAGGGGTCGCT+TGG | + | chr1_2:9480381-9480400 | Msa0054770:intron | 40.0% |
| ! | CTTTTCATTATGCAAGCCAG+TGG | - | chr1_2:9480469-9480488 | None:intergenic | 40.0% |
| AATGTAGGAACGACAATTCG+AGG | + | chr1_2:9480669-9480688 | Msa0054770:CDS | 40.0% | |
| ! | CAATAAAGTGTCCTCAAGCA+TGG | + | chr1_2:9480703-9480722 | Msa0054770:CDS | 40.0% |
| GAGTGGTTACATTAAGAGCA+AGG | - | chr1_2:9480755-9480774 | None:intergenic | 40.0% | |
| GTAAAAATGGCCTTCATGAG+TGG | - | chr1_2:9480772-9480791 | None:intergenic | 40.0% | |
| !!! | CTCATGAAGGCCATTTTTAC+TGG | + | chr1_2:9480772-9480791 | Msa0054770:CDS | 40.0% |
| CTCAGGTACCTCTCATATTT+CGG | + | chr1_2:9480826-9480845 | Msa0054770:intron | 40.0% | |
| TCAGGTACCTCTCATATTTC+GGG | + | chr1_2:9480827-9480846 | Msa0054770:intron | 40.0% | |
| TCTGCAAACAAAATACGGGA+TGG | - | chr1_2:9481011-9481030 | None:intergenic | 40.0% | |
| CTATAAACAACATATGGGCC+TGG | - | chr1_2:9481390-9481409 | None:intergenic | 40.0% | |
| CAAACTCCTGCATGTTCAAA+GGG | - | chr1_2:9481692-9481711 | None:intergenic | 40.0% | |
| ACAAACTCCTGCATGTTCAA+AGG | - | chr1_2:9481693-9481712 | None:intergenic | 40.0% | |
| TTGAACATGCAGGAGTTTGT+TGG | + | chr1_2:9481693-9481712 | Msa0054770:intron | 40.0% | |
| AATCTATGCAATTGGTGCAG+TGG | + | chr1_2:9481719-9481738 | Msa0054770:CDS | 40.0% | |
| GTGCAGTGGCTTCAATAATA+GGG | + | chr1_2:9481733-9481752 | Msa0054770:CDS | 40.0% | |
| TGCAGTGGCTTCAATAATAG+GGG | + | chr1_2:9481734-9481753 | Msa0054770:CDS | 40.0% | |
| GGAGTTGTGCATAGAATACT+AGG | - | chr1_2:9481803-9481822 | None:intergenic | 40.0% | |
| GATGCTGCTATAAGAATCAC+AGG | + | chr1_2:9481915-9481934 | Msa0054770:CDS | 40.0% | |
| GAATCACAGGCAAAATAAGG+TGG | + | chr1_2:9481928-9481947 | Msa0054770:CDS | 40.0% | |
| AATAAGGTGGATGCCTATGA+TGG | + | chr1_2:9481941-9481960 | Msa0054770:CDS | 40.0% | |
| !! | GGTGGCCTTATATCAAAATG+GGG | + | chr1_2:9482038-9482057 | Msa0054770:CDS | 40.0% |
| !! | CTCCACCCCATTTTGATATA+AGG | - | chr1_2:9482046-9482065 | None:intergenic | 40.0% |
| CTTATATCAAAATGGGGTGG+AGG | + | chr1_2:9482044-9482063 | Msa0054770:CDS | 40.0% | |
| GAAGGAATCAACTCCTCATA+AGG | - | chr1_2:9482194-9482213 | None:intergenic | 40.0% | |
| CTCATTTCACAAACCTCAGA+AGG | - | chr1_2:9482212-9482231 | None:intergenic | 40.0% | |
| !! | GCCATTCTGTTGGTTCTGTT+AGG | - | chr1_2:9479203-9479222 | None:intergenic | 45.0% |
| ! | AACCGACGCTTTTCCAGTAA+TGG | + | chr1_2:9479431-9479450 | Msa0054770:CDS | 45.0% |
| ! | ACCGACGCTTTTCCAGTAAT+GGG | + | chr1_2:9479432-9479451 | Msa0054770:CDS | 45.0% |
| ! | TCCCATTACTGGAAAAGCGT+CGG | - | chr1_2:9479436-9479455 | None:intergenic | 45.0% |
| !!! | AGGCCTTATTTTGTCGTTGC+TGG | + | chr1_2:9479465-9479484 | Msa0054770:CDS | 45.0% |
| TTTGTCGTTGCTGGAGTTGT+TGG | + | chr1_2:9479474-9479493 | Msa0054770:CDS | 45.0% | |
| TCTGCTACGATTGTTGCTGT+GGG | + | chr1_2:9479504-9479523 | Msa0054770:CDS | 45.0% | |
| ! | TAGTATTGAGGTTCCAGGGT+TGG | + | chr1_2:9479626-9479645 | Msa0054770:CDS | 45.0% |
| CCACACAAACTCTGCAAATC+AGG | - | chr1_2:9479654-9479673 | None:intergenic | 45.0% | |
| ! | CCTGATTTGCAGAGTTTGTG+TGG | + | chr1_2:9479651-9479670 | Msa0054770:CDS | 45.0% |
| !!! | TGTGGGTTTTGTTCTGGTTC+TGG | + | chr1_2:9479669-9479688 | Msa0054770:CDS | 45.0% |
| TGTTCATCATCTTGGTCCTC+AGG | + | chr1_2:9479725-9479744 | Msa0054770:CDS | 45.0% | |
| TAGTCGTGTCGAAAGTCTCA+AGG | + | chr1_2:9479856-9479875 | Msa0054770:intron | 45.0% | |
| TCCTGCTTTGACATTTGTGC+TGG | + | chr1_2:9480419-9480438 | Msa0054770:CDS | 45.0% | |
| CCTGCTTTGACATTTGTGCT+GGG | + | chr1_2:9480420-9480439 | Msa0054770:CDS | 45.0% | |
| !! | TAGGGGGTAGTGGAAAATGT+AGG | + | chr1_2:9480654-9480673 | Msa0054770:intron | 45.0% |
| TTGTCTGCAGTCAGAAATCC+CGG | - | chr1_2:9480985-9481004 | None:intergenic | 45.0% | |
| TGCTGAATACAGGCAATTCC+AGG | + | chr1_2:9481369-9481388 | Msa0054770:intron | 45.0% | |
| TTTCCTCCCTTTGAACATGC+AGG | + | chr1_2:9481683-9481702 | Msa0054770:intron | 45.0% | |
| GGTGCAGTGGCTTCAATAAT+AGG | + | chr1_2:9481732-9481751 | Msa0054770:CDS | 45.0% | |
| ! | GGCCTTATATCAAAATGGGG+TGG | + | chr1_2:9482041-9482060 | Msa0054770:CDS | 45.0% |
| ! | TCCTAATGTTGGGCCTTATG+AGG | + | chr1_2:9482178-9482197 | Msa0054770:CDS | 45.0% |
| TCCTCATAAGGCCCAACATT+AGG | - | chr1_2:9482182-9482201 | None:intergenic | 45.0% | |
| ! | TGAGGAGTTGATTCCTTCTG+AGG | + | chr1_2:9482196-9482215 | Msa0054770:CDS | 45.0% |
| TCGGTTAGAATGCCCCAGAT+AGG | - | chr1_2:9479417-9479436 | None:intergenic | 50.0% | |
| CTCCGACGATATCCCATTAC+TGG | - | chr1_2:9479447-9479466 | None:intergenic | 50.0% | |
| ! | CAGTAATGGGATATCGTCGG+AGG | + | chr1_2:9479445-9479464 | Msa0054770:CDS | 50.0% |
| CGTTGCTGGAGTTGTTGGAA+CGG | + | chr1_2:9479479-9479498 | Msa0054770:CDS | 50.0% | |
| GTCTGCTACGATTGTTGCTG+TGG | + | chr1_2:9479503-9479522 | Msa0054770:CDS | 50.0% | |
| !!! | GCGGCGTTGATGTGTTTTGT+TGG | + | chr1_2:9479546-9479565 | Msa0054770:CDS | 50.0% |
| !! | TCTGGTTCTGGTGCTCTTCT+TGG | + | chr1_2:9479681-9479700 | Msa0054770:CDS | 50.0% |
| !! | TTAGGGGTCGCTTGGTCTTA+TGG | + | chr1_2:9480389-9480408 | Msa0054770:intron | 50.0% |
| CCCAGCACAAATGTCAAAGC+AGG | - | chr1_2:9480423-9480442 | None:intergenic | 50.0% | |
| AGAGATGGCTTCCATGCTTG+AGG | - | chr1_2:9480717-9480736 | None:intergenic | 50.0% | |
| ! | GAGGTACCTGAGAGAATGCA+GGG | - | chr1_2:9480818-9480837 | None:intergenic | 50.0% |
| !! | AGAGGTACCTGAGAGAATGC+AGG | - | chr1_2:9480819-9480838 | None:intergenic | 50.0% |
| TGGTTACCTGCAGTGACTAC+CGG | + | chr1_2:9480963-9480982 | Msa0054770:intron | 50.0% | |
| ACTCCTGCATGTTCAAAGGG+AGG | - | chr1_2:9481689-9481708 | None:intergenic | 50.0% | |
| GGTATAGGCCAAGGCTTCAC+AGG | + | chr1_2:9479282-9479301 | Msa0054770:CDS | 55.0% | |
| AGAGTGAGCCTGTGAAGCCT+TGG | - | chr1_2:9479293-9479312 | None:intergenic | 55.0% | |
| GCTACGATTGTTGCTGTGGG+AGG | + | chr1_2:9479507-9479526 | Msa0054770:CDS | 55.0% | |
| GATTGTTGCTGTGGGAGGTG+AGG | + | chr1_2:9479512-9479531 | Msa0054770:CDS | 55.0% | |
| AGGTGAGGTGAGTGTGGTTG+CGG | + | chr1_2:9479527-9479546 | Msa0054770:CDS | 55.0% | |
| TGCAAATCAGGAGCCAACCC+TGG | - | chr1_2:9479642-9479661 | None:intergenic | 55.0% | |
| GGTTACCTGCAGTGACTACC+GGG | + | chr1_2:9480964-9480983 | Msa0054770:intron | 55.0% | |
| GAAATCCCGGTAGTCACTGC+AGG | - | chr1_2:9480972-9480991 | None:intergenic | 55.0% | |
| TGTGGGAGGTGAGGTGAGTG+TGG | + | chr1_2:9479521-9479540 | Msa0054770:CDS | 60.0% | |
| !! | GGGGTCGCTTGGTCTTATGG+CGG | + | chr1_2:9480392-9480411 | Msa0054770:intron | 60.0% |
| AGTCGGCCCTGCATTCTCTC+AGG | + | chr1_2:9480809-9480828 | Msa0054770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9479135 | 9482298 | 9479135 | ID=Msa0054770;Name=Msa0054770 |
| chr1_2 | mRNA | 9479135 | 9482298 | 9479135 | ID=Msa0054770-mRNA-1;Parent=Msa0054770;Name=Msa0054770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.5|1|1|1|4|0|493 |
| chr1_2 | exon | 9479135 | 9479746 | 9479135 | ID=Msa0054770-mRNA-1:exon:3522;Parent=Msa0054770-mRNA-1 |
| chr1_2 | exon | 9480393 | 9480494 | 9480393 | ID=Msa0054770-mRNA-1:exon:3523;Parent=Msa0054770-mRNA-1 |
| chr1_2 | exon | 9480657 | 9480830 | 9480657 | ID=Msa0054770-mRNA-1:exon:3524;Parent=Msa0054770-mRNA-1 |
| chr1_2 | exon | 9481705 | 9482298 | 9481705 | ID=Msa0054770-mRNA-1:exon:3525;Parent=Msa0054770-mRNA-1 |
| chr1_2 | CDS | 9479135 | 9479746 | 9479135 | ID=Msa0054770-mRNA-1:cds;Parent=Msa0054770-mRNA-1 |
| chr1_2 | CDS | 9480393 | 9480494 | 9480393 | ID=Msa0054770-mRNA-1:cds;Parent=Msa0054770-mRNA-1 |
| chr1_2 | CDS | 9480657 | 9480830 | 9480657 | ID=Msa0054770-mRNA-1:cds;Parent=Msa0054770-mRNA-1 |
| chr1_2 | CDS | 9481705 | 9482298 | 9481705 | ID=Msa0054770-mRNA-1:cds;Parent=Msa0054770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
