Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006060 | sp|Q9LEV7|FBT6_ARATH | 59.006 | 483 | 198 | 0 | 5 | 487 | 21 | 503 | 0.0 | 590 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0006060 | 0.815752 | 7.871386e-52 | -8.615850e-47 |
| Msa0004480 | Msa0006060 | 0.809612 | 1.736297e-50 | -8.615850e-47 |
| Msa0006060 | Msa0054770 | 0.823854 | 1.106734e-53 | -8.615850e-47 |
| Msa0006060 | Msa0090380 | 0.836760 | 7.748352e-57 | -8.615850e-47 |
| Msa0006060 | Msa0094710 | 0.802515 | 5.408752e-49 | -8.615850e-47 |
| Msa0006060 | Msa0117520 | 0.824166 | 9.350217e-54 | -8.615850e-47 |
| Msa0006060 | Msa0137860 | 0.827522 | 1.493916e-54 | -8.615850e-47 |
| Msa0006060 | Msa0138900 | 0.805960 | 1.037242e-49 | -8.615850e-47 |
| Msa0006060 | Msa0152560 | 0.824881 | 6.346818e-54 | -8.615850e-47 |
| Msa0006060 | Msa0187310 | 0.842995 | 1.839027e-58 | -8.615850e-47 |
| Msa0006060 | Msa0196880 | 0.820151 | 7.982032e-53 | -8.615850e-47 |
| Msa0006060 | Msa0224130 | 0.810325 | 1.219043e-50 | -8.615850e-47 |
| Msa0006060 | Msa0264680 | 0.806356 | 8.561620e-50 | -8.615850e-47 |
| Msa0006060 | Msa0265270 | 0.810583 | 1.072431e-50 | -8.615850e-47 |
| Msa0006060 | Msa0276430 | 0.814958 | 1.181634e-51 | -8.615850e-47 |
| Msa0006060 | Msa0302730 | 0.829488 | 5.006062e-55 | -8.615850e-47 |
| Msa0006060 | Msa0316470 | 0.801926 | 7.149201e-49 | -8.615850e-47 |
| Msa0006060 | Msa0319020 | 0.807374 | 5.214635e-50 | -8.615850e-47 |
| Msa0006060 | Msa0364790 | 0.825476 | 4.591881e-54 | -8.615850e-47 |
| Msa0006060 | Msa0365950 | 0.802606 | 5.180127e-49 | -8.615850e-47 |
| Msa0006060 | Msa0376970 | 0.806634 | 7.478603e-50 | -8.615850e-47 |
| Msa0006060 | Msa0388730 | 0.805820 | 1.109827e-49 | -8.615850e-47 |
| Msa0006060 | Msa0412260 | 0.815808 | 7.647959e-52 | -8.615850e-47 |
| Msa0006060 | Msa0413870 | 0.839731 | 1.329568e-57 | -8.615850e-47 |
| Msa0006060 | Msa0456770 | 0.823603 | 1.267148e-53 | -8.615850e-47 |
| Msa0006060 | Msa0519160 | 0.824710 | 6.965514e-54 | -8.615850e-47 |
| Msa0006060 | Msa0534870 | 0.822829 | 1.920734e-53 | -8.615850e-47 |
| Msa0006060 | Msa0545050 | 0.801644 | 8.168616e-49 | -8.615850e-47 |
| Msa0006060 | Msa0584600 | 0.806122 | 9.587108e-50 | -8.615850e-47 |
| Msa0006060 | Msa0588670 | 0.808559 | 2.918771e-50 | -8.615850e-47 |
| Msa0006060 | Msa0600590 | 0.821414 | 4.090098e-53 | -8.615850e-47 |
| Msa0006060 | Msa0631320 | 0.809122 | 2.212178e-50 | -8.615850e-47 |
| Msa0006060 | Msa0641130 | 0.810557 | 1.086547e-50 | -8.615850e-47 |
| Msa0006060 | Msa0654900 | 0.804279 | 2.331694e-49 | -8.615850e-47 |
| Msa0006060 | Msa0666530 | 0.801475 | 8.847321e-49 | -8.615850e-47 |
| Msa0006060 | Msa0679670 | 0.819659 | 1.034346e-52 | -8.615850e-47 |
| Msa0006060 | Msa0772740 | 0.841394 | 4.880588e-58 | -8.615850e-47 |
| Msa0006060 | Msa0812530 | 0.834400 | 3.063017e-56 | -8.615850e-47 |
| Msa0006060 | Msa0852790 | 0.811480 | 6.855039e-51 | -8.615850e-47 |
| Msa0006060 | Msa0945130 | 0.838037 | 3.648865e-57 | -8.615850e-47 |
| Msa0006060 | Msa1011250 | 0.803872 | 2.833290e-49 | -8.615850e-47 |
| Msa0006060 | Msa1015880 | 0.806902 | 6.564059e-50 | -8.615850e-47 |
| Msa0006060 | Msa1016960 | 0.836147 | 1.109285e-56 | -8.615850e-47 |
| Msa0006060 | Msa1059670 | 0.835388 | 1.727757e-56 | -8.615850e-47 |
| Msa0006060 | Msa1107200 | 0.808460 | 3.063803e-50 | -8.615850e-47 |
| Msa0006060 | Msa1109810 | 0.814117 | 1.814266e-51 | -8.615850e-47 |
| Msa0006060 | Msa1180720 | 0.831132 | 1.984877e-55 | -8.615850e-47 |
| Msa0006060 | Msa1183140 | 0.820681 | 6.032864e-53 | -8.615850e-47 |
| Msa0006060 | Msa1188350 | 0.812913 | 3.337650e-51 | -8.615850e-47 |
| Msa0006060 | Msa1208990 | 0.805709 | 1.171138e-49 | -8.615850e-47 |
| Msa0006060 | Msa1214170 | 0.804205 | 2.415068e-49 | -8.615850e-47 |
| Msa0006060 | Msa1225580 | 0.819689 | 1.017770e-52 | -8.615850e-47 |
| Msa0006060 | Msa1231710 | 0.800731 | 1.255936e-48 | -8.615850e-47 |
| Msa0006060 | Msa1252810 | 0.811778 | 5.903821e-51 | -8.615850e-47 |
| Msa0006060 | Msa1309760 | 0.815844 | 7.505506e-52 | -8.615850e-47 |
| Msa0006060 | Msa1312440 | 0.832524 | 8.998125e-56 | -8.615850e-47 |
| Msa0006060 | Msa1355510 | 0.807841 | 4.150357e-50 | -8.615850e-47 |
| Msa0006060 | Msa1360020 | 0.805330 | 1.406395e-49 | -8.615850e-47 |
| Msa0006060 | Msa1364080 | 0.806583 | 7.665842e-50 | -8.615850e-47 |
| Msa0006060 | Msa1423540 | 0.806305 | 8.773524e-50 | -8.615850e-47 |
| Msa0006060 | Msa1433410 | 0.832015 | 1.203083e-55 | -8.615850e-47 |
| Msa0006060 | Msa1443620 | 0.829867 | 4.047267e-55 | -8.615850e-47 |
| Msa0006060 | Msa1443640 | 0.807891 | 4.051107e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006060 | MtrunA17_Chr1g0150041 | 80.511 | 313 | 25 | 3 | 1 | 312 | 1 | 278 | 3.11e-171 | 483 |
| Msa0006060 | MtrunA17_Chr1g0150001 | 47.177 | 496 | 249 | 4 | 2 | 487 | 5 | 497 | 6.57e-157 | 455 |
| Msa0006060 | MtrunA17_Chr1g0150031 | 96.970 | 198 | 6 | 0 | 296 | 493 | 2 | 199 | 9.69e-137 | 392 |
| Msa0006060 | MtrunA17_Chr1g0205221 | 27.512 | 418 | 289 | 7 | 28 | 439 | 100 | 509 | 6.58e-49 | 176 |
| Msa0006060 | MtrunA17_Chr3g0098661 | 25.610 | 492 | 299 | 9 | 27 | 456 | 2 | 488 | 2.02e-42 | 157 |
| Msa0006060 | MtrunA17_Chr2g0293351 | 24.091 | 440 | 302 | 9 | 51 | 476 | 27 | 448 | 6.94e-29 | 118 |
| Msa0006060 | MtrunA17_Chr3g0079271 | 25.679 | 405 | 280 | 9 | 62 | 455 | 120 | 514 | 3.65e-23 | 102 |
| Msa0006060 | MtrunA17_Chr2g0293371 | 23.810 | 336 | 227 | 6 | 151 | 476 | 42 | 358 | 1.34e-16 | 81.3 |
| Msa0006060 | MtrunA17_Chr2g0293361 | 28.169 | 142 | 102 | 0 | 299 | 440 | 86 | 227 | 2.69e-13 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006060 | AT5G10820.1 | 59.006 | 483 | 198 | 0 | 5 | 487 | 21 | 503 | 0.0 | 590 |
| Msa0006060 | AT1G79710.2 | 46.598 | 485 | 255 | 2 | 4 | 487 | 11 | 492 | 3.14e-164 | 474 |
| Msa0006060 | AT1G79710.1 | 46.598 | 485 | 255 | 2 | 4 | 487 | 11 | 492 | 3.14e-164 | 474 |
| Msa0006060 | AT5G25050.1 | 45.380 | 487 | 259 | 2 | 5 | 487 | 9 | 492 | 2.65e-156 | 454 |
| Msa0006060 | AT5G25040.4 | 44.353 | 487 | 257 | 4 | 5 | 487 | 9 | 485 | 1.17e-141 | 416 |
| Msa0006060 | AT5G25040.2 | 42.188 | 512 | 257 | 5 | 5 | 487 | 9 | 510 | 3.37e-136 | 403 |
| Msa0006060 | AT1G79710.3 | 46.292 | 391 | 206 | 2 | 4 | 393 | 11 | 398 | 3.14e-128 | 379 |
| Msa0006060 | AT5G25040.1 | 44.731 | 427 | 226 | 3 | 5 | 430 | 9 | 426 | 8.64e-126 | 374 |
| Msa0006060 | AT5G25040.3 | 43.085 | 376 | 207 | 2 | 5 | 379 | 9 | 378 | 2.54e-106 | 322 |
| Msa0006060 | AT5G25040.5 | 47.093 | 344 | 169 | 3 | 147 | 487 | 5 | 338 | 5.20e-104 | 315 |
| Msa0006060 | AT2G32040.2 | 29.545 | 396 | 263 | 7 | 53 | 439 | 6 | 394 | 9.46e-49 | 173 |
| Msa0006060 | AT2G32040.1 | 29.298 | 413 | 274 | 9 | 36 | 439 | 122 | 525 | 1.07e-48 | 176 |
| Msa0006060 | AT5G54860.1 | 25.257 | 487 | 302 | 8 | 27 | 456 | 2 | 483 | 1.28e-43 | 161 |
| Msa0006060 | AT2G33280.1 | 24.265 | 408 | 290 | 7 | 62 | 459 | 103 | 501 | 7.87e-23 | 102 |
| Msa0006060 | AT2G33280.3 | 24.685 | 397 | 280 | 7 | 73 | 459 | 6 | 393 | 2.04e-22 | 100 |
| Msa0006060 | AT1G04570.1 | 25.587 | 426 | 302 | 9 | 44 | 462 | 86 | 503 | 2.43e-22 | 100 |
| Msa0006060 | AT1G04570.2 | 24.670 | 227 | 168 | 2 | 236 | 462 | 132 | 355 | 3.59e-17 | 84.0 |
| Msa0006060 | AT1G64890.1 | 22.069 | 435 | 305 | 9 | 1 | 431 | 1 | 405 | 5.60e-16 | 80.5 |
| Msa0006060 | AT2G33280.2 | 24.434 | 221 | 161 | 3 | 239 | 459 | 105 | 319 | 2.30e-14 | 75.1 |
Find 109 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACGTTGGAATTTGAAAAT+TGG | 0.214262 | 1_1:+8840050 | Msa0006060:CDS |
| CATGGATTCTTAAACCTATC+TGG | 0.221992 | 1_1:+8837587 | Msa0006060:CDS |
| TCTGGTTCTGGTGCTCTTCT+TGG | 0.244927 | 1_1:+8837868 | Msa0006060:CDS |
| TTAGGGGTCGCTTGGTCTTA+TGG | 0.248348 | 1_1:+8838577 | Msa0006060:intron |
| GGTGCAGTGGCTTCAATAAT+AGG | 0.259173 | 1_1:+8839921 | Msa0006060:CDS |
| TAGATTTGTTACACTTGTTT+TGG | 0.260439 | 1_1:+8840334 | Msa0006060:CDS |
| GGTTTCTTTGTTCATCATCT+TGG | 0.287418 | 1_1:+8837904 | Msa0006060:CDS |
| TCCTGCTTTGACATTTGTGC+TGG | 0.291747 | 1_1:+8838607 | Msa0006060:CDS |
| AACTAGTCACTGATTACTAT+TGG | 0.295416 | 1_1:+8837503 | Msa0006060:CDS |
| ACTCCAGCAACGACAAAATA+AGG | 0.315707 | 1_1:-8837655 | None:intergenic |
| TCCTCGTAAGGTCCAATATT+AGG | 0.328505 | 1_1:-8840368 | None:intergenic |
| GTTTCTCTACACTTCAGTTT+TGG | 0.333291 | 1_1:-8840471 | None:intergenic |
| TGGGTGGCCTTATATCAAAA+TGG | 0.333437 | 1_1:+8840225 | Msa0006060:CDS |
| TAAGAATCACAGGCAAAATA+AGG | 0.338692 | 1_1:+8840114 | Msa0006060:CDS |
| GTGCAGTGGCTTCAATAATA+GGG | 0.341061 | 1_1:+8839922 | Msa0006060:CDS |
| ATATGCAATATCTGGTCTAT+TGG | 0.342033 | 1_1:+8840013 | Msa0006060:CDS |
| CTGCTATGAATGTTGGGTTT+AGG | 0.346268 | 1_1:-8837429 | None:intergenic |
| AACATTGTTAGCCATTCTAT+TGG | 0.350866 | 1_1:-8837397 | None:intergenic |
| CCACACAAACTCTGCAAATC+AGG | 0.355919 | 1_1:-8837838 | None:intergenic |
| GCAGGAATATTCCTAGTATA+TGG | 0.356591 | 1_1:+8837448 | Msa0006060:CDS |
| TAGTATTGAGGTTCCTGGTT+TGG | 0.358965 | 1_1:+8837813 | Msa0006060:CDS |
| TGTTCATCATCTTGGTCCTC+AGG | 0.362448 | 1_1:+8837912 | Msa0006060:CDS |
| CAACTCCTATATGCAATATC+TGG | 0.376095 | 1_1:+8840005 | Msa0006060:CDS |
| AATGTTCCTTCAATTCCTAA+TGG | 0.382788 | 1_1:-8840173 | None:intergenic |
| TTTGTCGTTGCTGGAGTTGT+TGG | 0.390199 | 1_1:+8837661 | Msa0006060:CDS |
| AGGAATAGTATTGAGGTTCC+TGG | 0.407434 | 1_1:+8837808 | Msa0006060:CDS |
| GCCATTCTATTGGTTCTGTT+AGG | 0.415876 | 1_1:-8837387 | None:intergenic |
| ATATTCCTGCTATGAATGTT+GGG | 0.421667 | 1_1:-8837435 | None:intergenic |
| AATATTCCTGCTATGAATGT+TGG | 0.422576 | 1_1:-8837436 | None:intergenic |
| GGGTGGCCTTATATCAAAAT+GGG | 0.423143 | 1_1:+8840226 | Msa0006060:CDS |
| CCTGCTTTGACATTTGTGCT+GGG | 0.424650 | 1_1:+8838608 | Msa0006060:CDS |
| ACGTAGAGTTGAACTGTTGA+AGG | 0.432809 | 1_1:-8837547 | None:intergenic |
| CTCCGACGATATCCCATTAC+CGG | 0.438695 | 1_1:-8837631 | None:intergenic |
| TTGAATATGCAGGAGTTTGT+TGG | 0.457566 | 1_1:+8839882 | Msa0006060:intron |
| TTTGTGCTTAGTACCATCAT+AGG | 0.457654 | 1_1:-8840143 | None:intergenic |
| CTTGGCCTATACCATATACT+AGG | 0.458394 | 1_1:-8837459 | None:intergenic |
| AGCACAAAACTATGTCCATT+AGG | 0.463739 | 1_1:+8840158 | Msa0006060:CDS |
| CTATGTCCATTAGGAATTGA+AGG | 0.463884 | 1_1:+8840167 | Msa0006060:CDS |
| ATGGATTCTTAAACCTATCT+GGG | 0.464122 | 1_1:+8837588 | Msa0006060:CDS |
| GTTGGTATAATCTATGCAAT+TGG | 0.464940 | 1_1:+8839900 | Msa0006060:CDS |
| GCTACGATTGTTGCGGTTGG+AGG | 0.467301 | 1_1:+8837694 | Msa0006060:CDS |
| ATATTCCTAGTATATGGTAT+AGG | 0.475760 | 1_1:+8837454 | Msa0006060:CDS |
| TTGTCGTTGCTGGAGTTGTT+GGG | 0.482406 | 1_1:+8837662 | Msa0006060:CDS |
| CTTCTTGGTTATCTTGCTAG+TGG | 0.487565 | 1_1:+8837883 | Msa0006060:CDS |
| CGAGGAGTTGATTCCTTCTG+AGG | 0.487566 | 1_1:+8840385 | Msa0006060:CDS |
| CCTGATTTGCAGAGTTTGTG+TGG | 0.489748 | 1_1:+8837838 | Msa0006060:CDS |
| CTGATTTGCAGAGTTTGTGT+GGG | 0.494014 | 1_1:+8837839 | Msa0006060:CDS |
| ATCTATGAAAAGAGAACCAC+TGG | 0.501257 | 1_1:+8838638 | Msa0006060:CDS |
| GGTATAGGCCAAGGCTTCAC+AGG | 0.501541 | 1_1:+8837469 | Msa0006060:CDS |
| AGTCGGCCCTGCATTCTCTC+AGG | 0.502838 | 1_1:+8838996 | Msa0006060:CDS |
| CTATTGATGCTTGTATTGCA+AGG | 0.511611 | 1_1:+8837788 | Msa0006060:CDS |
| CTTATATCAAAATGGGGTGG+AGG | 0.513361 | 1_1:+8840233 | Msa0006060:CDS |
| TCTGCTACGATTGTTGCGGT+TGG | 0.514030 | 1_1:+8837691 | Msa0006060:CDS |
| CTCATTTCACAAACCTCAGA+AGG | 0.515142 | 1_1:-8840398 | None:intergenic |
| GTTAATGTGTATTGATAGCA+TGG | 0.515222 | 1_1:+8840205 | Msa0006060:CDS |
| TATTGCAAGGAATAGTATTG+AGG | 0.520684 | 1_1:+8837801 | Msa0006060:CDS |
| TGAATCTTGTTGTGTTGACA+TGG | 0.524137 | 1_1:-8837320 | None:intergenic |
| ATAGACCAGATATTGCATAT+AGG | 0.528384 | 1_1:-8840010 | None:intergenic |
| AATAAGGTGGATGCCTATGA+TGG | 0.535562 | 1_1:+8840130 | Msa0006060:CDS |
| CTATGAATGTTGGGTTTAGG+TGG | 0.536773 | 1_1:-8837426 | None:intergenic |
| TCCTAACAGAACCAATAGAA+TGG | 0.537468 | 1_1:+8837386 | Msa0006060:CDS |
| AGAGTTGAACTGTTGAAGGT+TGG | 0.538340 | 1_1:-8837543 | None:intergenic |
| CAGATAGGTTTAAGAATCCA+TGG | 0.538409 | 1_1:-8837586 | None:intergenic |
| AGGTGAGGTGAGTGTGGTTG+CGG | 0.539592 | 1_1:+8837714 | Msa0006060:CDS |
| CTAGTATATGGTATAGGCCA+AGG | 0.539645 | 1_1:+8837460 | Msa0006060:CDS |
| AGAGTGAGCCTGTGAAGCCT+TGG | 0.539998 | 1_1:-8837477 | None:intergenic |
| CCCAGCACAAATGTCAAAGC+AGG | 0.540822 | 1_1:-8838608 | None:intergenic |
| TCGGTTAGAATGCCCCAGAT+AGG | 0.542383 | 1_1:-8837601 | None:intergenic |
| AATGTAGGAACGACAATTCG+AGG | 0.547125 | 1_1:+8838856 | Msa0006060:CDS |
| ACTTAATCTTCATTCTACGT+TGG | 0.547948 | 1_1:+8840036 | Msa0006060:CDS |
| CTTGCATAATGAAAAGAAGA+AGG | 0.548422 | 1_1:+8838661 | Msa0006060:CDS |
| GATGCTGCTATAAGAATCAC+AGG | 0.548431 | 1_1:+8840104 | Msa0006060:CDS |
| CAATAAAGTGTCCTCAAGCA+TGG | 0.550340 | 1_1:+8838890 | Msa0006060:CDS |
| AGAGGTACCTGAGAGAATGC+AGG | 0.554272 | 1_1:-8839003 | None:intergenic |
| TTAAAAGAACAGCTAACCAT+AGG | 0.563065 | 1_1:-8840301 | None:intergenic |
| CTTAATGTAACCACTCATGA+AGG | 0.563754 | 1_1:+8838946 | Msa0006060:CDS |
| GAAGGAATCAACTCCTCGTA+AGG | 0.565366 | 1_1:-8840380 | None:intergenic |
| GAAAGGAACATGTAAAGAGA+TGG | 0.565527 | 1_1:-8838916 | None:intergenic |
| TCCTAATATTGGACCTTACG+AGG | 0.567122 | 1_1:+8840367 | Msa0006060:CDS |
| CGTTGCTGGAGTTGTTGGGA+CGG | 0.568419 | 1_1:+8837666 | Msa0006060:CDS |
| TCCCATTACCGGAAAAGCGT+CGG | 0.572083 | 1_1:-8837620 | None:intergenic |
| GAGTGGTTACATTAAGAGCA+AGG | 0.572992 | 1_1:-8838939 | None:intergenic |
| TGGTATACTGATTCAAAAGT+CGG | 0.575373 | 1_1:+8838979 | Msa0006060:CDS |
| TTATATCAAAATGGGGTGGA+GGG | 0.579386 | 1_1:+8840234 | Msa0006060:CDS |
| TGATATTGATGAAGAAACCT+TGG | 0.581003 | 1_1:+8840430 | Msa0006060:CDS |
| AGAGATGGCTTCCATGCTTG+AGG | 0.584725 | 1_1:-8838901 | None:intergenic |
| TGCAGTGGCTTCAATAATAG+GGG | 0.585973 | 1_1:+8839923 | Msa0006060:CDS |
| TGCAAATCAGGAGCCAAACC+AGG | 0.586173 | 1_1:-8837826 | None:intergenic |
| AATCTATGCAATTGGTGCAG+TGG | 0.592181 | 1_1:+8839908 | Msa0006060:CDS |
| CTAAACCCAACATTCATAGC+AGG | 0.594016 | 1_1:+8837430 | Msa0006060:CDS |
| TCTGTTAGGATTGATAACAA+TGG | 0.594770 | 1_1:-8837373 | None:intergenic |
| GGTTGGAGGTGAGGTGAGTG+TGG | 0.600541 | 1_1:+8837708 | Msa0006060:CDS |
| TTACATTAAGAGCAAGGGAA+AGG | 0.602871 | 1_1:-8838933 | None:intergenic |
| TTCCGGTAATGGGATATCGT+CGG | 0.604421 | 1_1:+8837629 | Msa0006060:CDS |
| AGTGGTTACATTAAGAGCAA+GGG | 0.607736 | 1_1:-8838938 | None:intergenic |
| GATTGTTGCGGTTGGAGGTG+AGG | 0.608467 | 1_1:+8837699 | Msa0006060:CDS |
| ATTTAAAGGAACAAGCTCCA+AGG | 0.608681 | 1_1:-8840447 | None:intergenic |
| GAATCACAGGCAAAATAAGG+TGG | 0.610591 | 1_1:+8840117 | Msa0006060:CDS |
| TAGGAATATACTTCATACCA+TGG | 0.624013 | 1_1:+8837569 | Msa0006060:CDS |
| TTAATGTGTATTGATAGCAT+GGG | 0.628699 | 1_1:+8840206 | Msa0006060:CDS |
| GAGGTACCTGAGAGAATGCA+GGG | 0.635587 | 1_1:-8839002 | None:intergenic |
| GGCCTTATATCAAAATGGGG+TGG | 0.639767 | 1_1:+8840230 | Msa0006060:CDS |
| ATGTGTATTGATAGCATGGG+TGG | 0.646334 | 1_1:+8840209 | Msa0006060:CDS |
| GGGGTCGCTTGGTCTTATGG+CGG | 0.651608 | 1_1:+8838580 | Msa0006060:intron |
| CGGTAATGGGATATCGTCGG+AGG | 0.661735 | 1_1:+8837632 | Msa0006060:CDS |
| TCAACAGTTCAACTCTACGT+AGG | 0.687400 | 1_1:+8837550 | Msa0006060:CDS |
| TGGATTCTTAAACCTATCTG+GGG | 0.710158 | 1_1:+8837589 | Msa0006060:CDS |
| GGTGGCCTTATATCAAAATG+GGG | 0.718644 | 1_1:+8840227 | Msa0006060:CDS |
| GGTGTCTGCTACGATTGTTG+CGG | 0.735711 | 1_1:+8837687 | Msa0006060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATAAATAAAAATGTTT+AGG | + | chr1_1:8838020-8838039 | Msa0006060:intron | 10.0% |
| !! | TACTTTATTAATAAACATAT+TGG | - | chr1_1:8838487-8838506 | None:intergenic | 10.0% |
| !!! | CTGATTAAATACATTTTTTA+GGG | + | chr1_1:8838823-8838842 | Msa0006060:intron | 15.0% |
| !!! | TGATTAAATACATTTTTTAG+GGG | + | chr1_1:8838824-8838843 | Msa0006060:intron | 15.0% |
| !! | TAACAAAAGATAAATAAAGT+CGG | + | chr1_1:8839299-8839318 | Msa0006060:intron | 15.0% |
| !!! | GATCATGTTAATCATTTTTA+AGG | + | chr1_1:8838266-8838285 | Msa0006060:intron | 20.0% |
| !!! | ATTTAGTTGATAAAATCTGA+AGG | - | chr1_1:8838403-8838422 | None:intergenic | 20.0% |
| !!! | GCTGATTAAATACATTTTTT+AGG | + | chr1_1:8838822-8838841 | Msa0006060:intron | 20.0% |
| !!! | GATTAAATACATTTTTTAGG+GGG | + | chr1_1:8838825-8838844 | Msa0006060:intron | 20.0% |
| !! | TTGAATACAAATTGTAAGTT+CGG | - | chr1_1:8839120-8839139 | None:intergenic | 20.0% |
| !! | AATAAGGTGAAAACAAATTA+TGG | + | chr1_1:8839379-8839398 | Msa0006060:intron | 20.0% |
| !!! | CTTTTAACATATAAGTACTT+AGG | - | chr1_1:8839767-8839786 | None:intergenic | 20.0% |
| !! | CTCTTTATAAGAAAAAGAAA+TGG | - | chr1_1:8839847-8839866 | None:intergenic | 20.0% |
| ! | ATATTCCTAGTATATGGTAT+AGG | + | chr1_1:8837454-8837473 | Msa0006060:CDS | 25.0% |
| ! | AAAATAGAAAAACAAACCTG+AGG | - | chr1_1:8837931-8837950 | None:intergenic | 25.0% |
| ! | ACAACTAGACATACAAAATA+GGG | - | chr1_1:8837956-8837975 | None:intergenic | 25.0% |
| ! | TACAACTAGACATACAAAAT+AGG | - | chr1_1:8837957-8837976 | None:intergenic | 25.0% |
| !! | TTACATTTTCCTCTTCAAAA+AGG | + | chr1_1:8838088-8838107 | Msa0006060:intron | 25.0% |
| !!! | GAATCATGCTTTTAGTTTTT+AGG | + | chr1_1:8838177-8838196 | Msa0006060:intron | 25.0% |
| !!! | ATGCTTTTAGTTTTTAGGAT+TGG | + | chr1_1:8838182-8838201 | Msa0006060:intron | 25.0% |
| !! | ATTGAAGGTTTTCAATTTCA+TGG | + | chr1_1:8838329-8838348 | Msa0006060:intron | 25.0% |
| !!! | ATGCTTCTGTTGTTATTTTA+GGG | + | chr1_1:8838560-8838579 | Msa0006060:intron | 25.0% |
| ! | ATAATGAAAAGAAGAAGGTT+AGG | + | chr1_1:8838666-8838685 | Msa0006060:intron | 25.0% |
| ! | AATCAGTATACCAGTAAAAA+TGG | - | chr1_1:8838972-8838991 | None:intergenic | 25.0% |
| ! | TTGTATTCAATTGCTTAGAT+TGG | + | chr1_1:8839130-8839149 | Msa0006060:intron | 25.0% |
| ! | ATTCATCTGCAAACAAAATA+CGG | - | chr1_1:8839203-8839222 | None:intergenic | 25.0% |
| ! | TTGTATGCAATTAATTGCTT+AGG | + | chr1_1:8839506-8839525 | Msa0006060:intron | 25.0% |
| ! | GTCATCTATAAACAACATAT+GGG | - | chr1_1:8839582-8839601 | None:intergenic | 25.0% |
| ! | AGTCATCTATAAACAACATA+TGG | - | chr1_1:8839583-8839602 | None:intergenic | 25.0% |
| !! | TTTTCACTGAAAACATCTTA+TGG | - | chr1_1:8839702-8839721 | None:intergenic | 25.0% |
| ! | ACATATAAGTACTTAGGTAT+AGG | - | chr1_1:8839761-8839780 | None:intergenic | 25.0% |
| !!! | TGTAGTTTTTTAGATACTTG+TGG | - | chr1_1:8839959-8839978 | None:intergenic | 25.0% |
| !! | TTAATGTGTATTGATAGCAT+GGG | + | chr1_1:8840206-8840225 | Msa0006060:CDS | 25.0% |
| !!! | TAGATTTGTTACACTTGTTT+TGG | + | chr1_1:8840334-8840353 | Msa0006060:CDS | 25.0% |
| !! | GTTTTTCTTGTTCCTAATAT+TGG | + | chr1_1:8840356-8840375 | Msa0006060:CDS | 25.0% |
| ! | TCTGTTAGGATTGATAACAA+TGG | - | chr1_1:8837376-8837395 | None:intergenic | 30.0% |
| AACATTGTTAGCCATTCTAT+TGG | - | chr1_1:8837400-8837419 | None:intergenic | 30.0% | |
| ATATTCCTGCTATGAATGTT+GGG | - | chr1_1:8837438-8837457 | None:intergenic | 30.0% | |
| AATATTCCTGCTATGAATGT+TGG | - | chr1_1:8837439-8837458 | None:intergenic | 30.0% | |
| ! | AACTAGTCACTGATTACTAT+TGG | + | chr1_1:8837503-8837522 | Msa0006060:CDS | 30.0% |
| TAGGAATATACTTCATACCA+TGG | + | chr1_1:8837569-8837588 | Msa0006060:CDS | 30.0% | |
| ATGGATTCTTAAACCTATCT+GGG | + | chr1_1:8837588-8837607 | Msa0006060:CDS | 30.0% | |
| TATTGCAAGGAATAGTATTG+AGG | + | chr1_1:8837801-8837820 | Msa0006060:CDS | 30.0% | |
| !!! | GATGCTTCTGTTGTTATTTT+AGG | + | chr1_1:8838559-8838578 | Msa0006060:intron | 30.0% |
| !!! | TGCTTCTGTTGTTATTTTAG+GGG | + | chr1_1:8838561-8838580 | Msa0006060:intron | 30.0% |
| CTTGCATAATGAAAAGAAGA+AGG | + | chr1_1:8838661-8838680 | Msa0006060:CDS | 30.0% | |
| TGATTTCACTTTGTGCAAAT+AGG | - | chr1_1:8838723-8838742 | None:intergenic | 30.0% | |
| ! | TTAGTTAGTTAGTGCTGAAT+TGG | + | chr1_1:8838800-8838819 | Msa0006060:intron | 30.0% |
| !! | TGGTATACTGATTCAAAAGT+CGG | + | chr1_1:8838979-8838998 | Msa0006060:CDS | 30.0% |
| ! | ACATTTGAGATCATGGTTAT+CGG | + | chr1_1:8839066-8839085 | Msa0006060:intron | 30.0% |
| TTCATCTGCAAACAAAATAC+GGG | - | chr1_1:8839202-8839221 | None:intergenic | 30.0% | |
| ! | ATTGAGGTGTTTATCTAAAC+AGG | - | chr1_1:8839231-8839250 | None:intergenic | 30.0% |
| AAGTGATTAGAGCTTAATTG+AGG | - | chr1_1:8839247-8839266 | None:intergenic | 30.0% | |
| CTGGAGAACTTATAGAAATA+AGG | + | chr1_1:8839363-8839382 | Msa0006060:intron | 30.0% | |
| ! | TCTTTTGACATAAACACTTG+TGG | + | chr1_1:8839636-8839655 | Msa0006060:intron | 30.0% |
| !!! | TCACTTTTTTAGTCTCTGTT+TGG | - | chr1_1:8839810-8839829 | None:intergenic | 30.0% |
| GTTGGTATAATCTATGCAAT+TGG | + | chr1_1:8839900-8839919 | Msa0006060:CDS | 30.0% | |
| ATAGACCAGATATTGCATAT+AGG | - | chr1_1:8840013-8840032 | None:intergenic | 30.0% | |
| ATATGCAATATCTGGTCTAT+TGG | + | chr1_1:8840013-8840032 | Msa0006060:CDS | 30.0% | |
| ACTTAATCTTCATTCTACGT+TGG | + | chr1_1:8840036-8840055 | Msa0006060:CDS | 30.0% | |
| CTACGTTGGAATTTGAAAAT+TGG | + | chr1_1:8840050-8840069 | Msa0006060:CDS | 30.0% | |
| ATGACAACAAAAAAGTAGTC+AGG | - | chr1_1:8840080-8840099 | None:intergenic | 30.0% | |
| TAAGAATCACAGGCAAAATA+AGG | + | chr1_1:8840114-8840133 | Msa0006060:CDS | 30.0% | |
| AATGTTCCTTCAATTCCTAA+TGG | - | chr1_1:8840176-8840195 | None:intergenic | 30.0% | |
| ! | GTTAATGTGTATTGATAGCA+TGG | + | chr1_1:8840205-8840224 | Msa0006060:CDS | 30.0% |
| !! | GAACTGATTTTACTAACCTA+TGG | + | chr1_1:8840285-8840304 | Msa0006060:CDS | 30.0% |
| TTAAAAGAACAGCTAACCAT+AGG | - | chr1_1:8840304-8840323 | None:intergenic | 30.0% | |
| TGATATTGATGAAGAAACCT+TGG | + | chr1_1:8840430-8840449 | Msa0006060:CDS | 30.0% | |
| !! | ACTTCAGTTTTGGCATTTAA+AGG | - | chr1_1:8840464-8840483 | None:intergenic | 30.0% |
| TCCTAACAGAACCAATAGAA+TGG | + | chr1_1:8837386-8837405 | Msa0006060:CDS | 35.0% | |
| GCAGGAATATTCCTAGTATA+TGG | + | chr1_1:8837448-8837467 | Msa0006060:CDS | 35.0% | |
| CAGATAGGTTTAAGAATCCA+TGG | - | chr1_1:8837589-8837608 | None:intergenic | 35.0% | |
| CATGGATTCTTAAACCTATC+TGG | + | chr1_1:8837587-8837606 | Msa0006060:CDS | 35.0% | |
| TGGATTCTTAAACCTATCTG+GGG | + | chr1_1:8837589-8837608 | Msa0006060:CDS | 35.0% | |
| CTATTGATGCTTGTATTGCA+AGG | + | chr1_1:8837788-8837807 | Msa0006060:CDS | 35.0% | |
| GGTTTCTTTGTTCATCATCT+TGG | + | chr1_1:8837904-8837923 | Msa0006060:CDS | 35.0% | |
| !! | ATACGAGAACCTTTTTGAAG+AGG | - | chr1_1:8838100-8838119 | None:intergenic | 35.0% |
| CTTCAAAAAGGTTCTCGTAT+TGG | + | chr1_1:8838100-8838119 | Msa0006060:intron | 35.0% | |
| CTCATATCTCACAAGAACAT+TGG | - | chr1_1:8838139-8838158 | None:intergenic | 35.0% | |
| !! | AGTTCTGAGATTGTAGAGAA+TGG | + | chr1_1:8838300-8838319 | Msa0006060:intron | 35.0% |
| AACTGAAAGAACTGCTGTAA+AGG | - | chr1_1:8838449-8838468 | None:intergenic | 35.0% | |
| ATCTATGAAAAGAGAACCAC+TGG | + | chr1_1:8838638-8838657 | Msa0006060:CDS | 35.0% | |
| GTGCAAATAGGCTTATGATA+TGG | - | chr1_1:8838711-8838730 | None:intergenic | 35.0% | |
| !!! | ATACATTTTTTAGGGGGTAG+TGG | + | chr1_1:8838831-8838850 | Msa0006060:intron | 35.0% |
| GAAAGGAACATGTAAAGAGA+TGG | - | chr1_1:8838919-8838938 | None:intergenic | 35.0% | |
| TTACATTAAGAGCAAGGGAA+AGG | - | chr1_1:8838936-8838955 | None:intergenic | 35.0% | |
| AGTGGTTACATTAAGAGCAA+GGG | - | chr1_1:8838941-8838960 | None:intergenic | 35.0% | |
| CTTAATGTAACCACTCATGA+AGG | + | chr1_1:8838946-8838965 | Msa0006060:CDS | 35.0% | |
| TCAATTTCCCGAAATATGAG+AGG | - | chr1_1:8839024-8839043 | None:intergenic | 35.0% | |
| ! | AGTCACTACATTTGAGATCA+TGG | + | chr1_1:8839059-8839078 | Msa0006060:intron | 35.0% |
| !!! | GCTTTTTTCATAAGCTCTTC+TGG | + | chr1_1:8839344-8839363 | Msa0006060:intron | 35.0% |
| CTAATGGAATTGCTGAATAC+AGG | + | chr1_1:8839546-8839565 | Msa0006060:intron | 35.0% | |
| TAGATGACTAATGACCTGTT+TGG | + | chr1_1:8839594-8839613 | Msa0006060:intron | 35.0% | |
| TCAAACAAGTCAATCCAAAC+AGG | - | chr1_1:8839611-8839630 | None:intergenic | 35.0% | |
| AACACTTGTGGAAACTGTTT+AGG | + | chr1_1:8839648-8839667 | Msa0006060:intron | 35.0% | |
| CTGAAAACATCTTATGGACA+TGG | - | chr1_1:8839696-8839715 | None:intergenic | 35.0% | |
| CAAACTCCTGCATATTCAAA+GGG | - | chr1_1:8839881-8839900 | None:intergenic | 35.0% | |
| ACAAACTCCTGCATATTCAA+AGG | - | chr1_1:8839882-8839901 | None:intergenic | 35.0% | |
| TTGAATATGCAGGAGTTTGT+TGG | + | chr1_1:8839882-8839901 | Msa0006060:intron | 35.0% | |
| CAACTCCTATATGCAATATC+TGG | + | chr1_1:8840005-8840024 | Msa0006060:CDS | 35.0% | |
| TTTGTGCTTAGTACCATCAT+AGG | - | chr1_1:8840146-8840165 | None:intergenic | 35.0% | |
| AGCACAAAACTATGTCCATT+AGG | + | chr1_1:8840158-8840177 | Msa0006060:CDS | 35.0% | |
| CTATGTCCATTAGGAATTGA+AGG | + | chr1_1:8840167-8840186 | Msa0006060:CDS | 35.0% | |
| TTATATCAAAATGGGGTGGA+GGG | + | chr1_1:8840234-8840253 | Msa0006060:CDS | 35.0% | |
| ATTTAAAGGAACAAGCTCCA+AGG | - | chr1_1:8840450-8840469 | None:intergenic | 35.0% | |
| !! | GCCATTCTATTGGTTCTGTT+AGG | - | chr1_1:8837390-8837409 | None:intergenic | 40.0% |
| CTATGAATGTTGGGTTTAGG+TGG | - | chr1_1:8837429-8837448 | None:intergenic | 40.0% | |
| CTGCTATGAATGTTGGGTTT+AGG | - | chr1_1:8837432-8837451 | None:intergenic | 40.0% | |
| CTAAACCCAACATTCATAGC+AGG | + | chr1_1:8837430-8837449 | Msa0006060:CDS | 40.0% | |
| CTTGGCCTATACCATATACT+AGG | - | chr1_1:8837462-8837481 | None:intergenic | 40.0% | |
| CTAGTATATGGTATAGGCCA+AGG | + | chr1_1:8837460-8837479 | Msa0006060:CDS | 40.0% | |
| AGAGTTGAACTGTTGAAGGT+TGG | - | chr1_1:8837546-8837565 | None:intergenic | 40.0% | |
| ACGTAGAGTTGAACTGTTGA+AGG | - | chr1_1:8837550-8837569 | None:intergenic | 40.0% | |
| TCAACAGTTCAACTCTACGT+AGG | + | chr1_1:8837550-8837569 | Msa0006060:CDS | 40.0% | |
| ACTCCAGCAACGACAAAATA+AGG | - | chr1_1:8837658-8837677 | None:intergenic | 40.0% | |
| ! | AGGAATAGTATTGAGGTTCC+TGG | + | chr1_1:8837808-8837827 | Msa0006060:CDS | 40.0% |
| ! | TAGTATTGAGGTTCCTGGTT+TGG | + | chr1_1:8837813-8837832 | Msa0006060:CDS | 40.0% |
| ! | CTGATTTGCAGAGTTTGTGT+GGG | + | chr1_1:8837839-8837858 | Msa0006060:CDS | 40.0% |
| !!! | AGTTTGTGTGGGTTTTGTTC+TGG | + | chr1_1:8837850-8837869 | Msa0006060:CDS | 40.0% |
| CTTCTTGGTTATCTTGCTAG+TGG | + | chr1_1:8837883-8837902 | Msa0006060:CDS | 40.0% | |
| CAAAAAGGTTCTCGTATTGG+TGG | + | chr1_1:8838103-8838122 | Msa0006060:intron | 40.0% | |
| AGGATTGGAGTTGAGCAATT+TGG | + | chr1_1:8838197-8838216 | Msa0006060:intron | 40.0% | |
| TTGGAGTTGAGCAATTTGGT+TGG | + | chr1_1:8838201-8838220 | Msa0006060:intron | 40.0% | |
| !! | AGAGAATGGACTGTGATTGA+AGG | + | chr1_1:8838314-8838333 | Msa0006060:intron | 40.0% |
| ACACTGTAATGTCTGATGAG+TGG | + | chr1_1:8838536-8838555 | Msa0006060:intron | 40.0% | |
| CACTGTAATGTCTGATGAGT+GGG | + | chr1_1:8838537-8838556 | Msa0006060:intron | 40.0% | |
| !!! | TTGTTATTTTAGGGGTCGCT+TGG | + | chr1_1:8838569-8838588 | Msa0006060:intron | 40.0% |
| ! | CTTTTCATTATGCAAGCCAG+TGG | - | chr1_1:8838657-8838676 | None:intergenic | 40.0% |
| AATGTAGGAACGACAATTCG+AGG | + | chr1_1:8838856-8838875 | Msa0006060:CDS | 40.0% | |
| ! | CAATAAAGTGTCCTCAAGCA+TGG | + | chr1_1:8838890-8838909 | Msa0006060:CDS | 40.0% |
| GAGTGGTTACATTAAGAGCA+AGG | - | chr1_1:8838942-8838961 | None:intergenic | 40.0% | |
| GTAAAAATGGCCTTCATGAG+TGG | - | chr1_1:8838959-8838978 | None:intergenic | 40.0% | |
| !!! | CTCATGAAGGCCATTTTTAC+TGG | + | chr1_1:8838959-8838978 | Msa0006060:CDS | 40.0% |
| CTCAGGTACCTCTCATATTT+CGG | + | chr1_1:8839013-8839032 | Msa0006060:intron | 40.0% | |
| TCAGGTACCTCTCATATTTC+GGG | + | chr1_1:8839014-8839033 | Msa0006060:intron | 40.0% | |
| TTGTCTACAGTCAGAAATCC+CGG | - | chr1_1:8839172-8839191 | None:intergenic | 40.0% | |
| TCTGCAAACAAAATACGGGA+TGG | - | chr1_1:8839198-8839217 | None:intergenic | 40.0% | |
| AGCTACTGATGAACATCAGA+CGG | + | chr1_1:8839458-8839477 | Msa0006060:intron | 40.0% | |
| TAGCTAACTGCAGTGACTAA+TGG | + | chr1_1:8839530-8839549 | Msa0006060:intron | 40.0% | |
| CTATAAACAACATATGGGCC+TGG | - | chr1_1:8839577-8839596 | None:intergenic | 40.0% | |
| TTTCCTCCCTTTGAATATGC+AGG | + | chr1_1:8839872-8839891 | Msa0006060:intron | 40.0% | |
| AATCTATGCAATTGGTGCAG+TGG | + | chr1_1:8839908-8839927 | Msa0006060:CDS | 40.0% | |
| GTGCAGTGGCTTCAATAATA+GGG | + | chr1_1:8839922-8839941 | Msa0006060:CDS | 40.0% | |
| TGCAGTGGCTTCAATAATAG+GGG | + | chr1_1:8839923-8839942 | Msa0006060:CDS | 40.0% | |
| GATGCTGCTATAAGAATCAC+AGG | + | chr1_1:8840104-8840123 | Msa0006060:CDS | 40.0% | |
| GAATCACAGGCAAAATAAGG+TGG | + | chr1_1:8840117-8840136 | Msa0006060:CDS | 40.0% | |
| AATAAGGTGGATGCCTATGA+TGG | + | chr1_1:8840130-8840149 | Msa0006060:CDS | 40.0% | |
| ! | ATGTGTATTGATAGCATGGG+TGG | + | chr1_1:8840209-8840228 | Msa0006060:CDS | 40.0% |
| !! | TGGGTGGCCTTATATCAAAA+TGG | + | chr1_1:8840225-8840244 | Msa0006060:CDS | 40.0% |
| !! | GGGTGGCCTTATATCAAAAT+GGG | + | chr1_1:8840226-8840245 | Msa0006060:CDS | 40.0% |
| !! | GGTGGCCTTATATCAAAATG+GGG | + | chr1_1:8840227-8840246 | Msa0006060:CDS | 40.0% |
| !! | CTCCACCCCATTTTGATATA+AGG | - | chr1_1:8840235-8840254 | None:intergenic | 40.0% |
| CTTATATCAAAATGGGGTGG+AGG | + | chr1_1:8840233-8840252 | Msa0006060:CDS | 40.0% | |
| TCCTAATATTGGACCTTACG+AGG | + | chr1_1:8840367-8840386 | Msa0006060:CDS | 40.0% | |
| TCCTCGTAAGGTCCAATATT+AGG | - | chr1_1:8840371-8840390 | None:intergenic | 40.0% | |
| CTCATTTCACAAACCTCAGA+AGG | - | chr1_1:8840401-8840420 | None:intergenic | 40.0% | |
| ! | CATTCTAACCGACGCTTTTC+CGG | + | chr1_1:8837612-8837631 | Msa0006060:CDS | 45.0% |
| !! | TTCCGGTAATGGGATATCGT+CGG | + | chr1_1:8837629-8837648 | Msa0006060:CDS | 45.0% |
| !!! | AGGCCTTATTTTGTCGTTGC+TGG | + | chr1_1:8837652-8837671 | Msa0006060:CDS | 45.0% |
| TTTGTCGTTGCTGGAGTTGT+TGG | + | chr1_1:8837661-8837680 | Msa0006060:CDS | 45.0% | |
| TTGTCGTTGCTGGAGTTGTT+GGG | + | chr1_1:8837662-8837681 | Msa0006060:CDS | 45.0% | |
| CCACACAAACTCTGCAAATC+AGG | - | chr1_1:8837841-8837860 | None:intergenic | 45.0% | |
| ! | CCTGATTTGCAGAGTTTGTG+TGG | + | chr1_1:8837838-8837857 | Msa0006060:CDS | 45.0% |
| !!! | TGTGGGTTTTGTTCTGGTTC+TGG | + | chr1_1:8837856-8837875 | Msa0006060:CDS | 45.0% |
| TGTTCATCATCTTGGTCCTC+AGG | + | chr1_1:8837912-8837931 | Msa0006060:CDS | 45.0% | |
| TAGTCGTGTCGAAAGTCTCA+AGG | + | chr1_1:8838044-8838063 | Msa0006060:intron | 45.0% | |
| TCCTGCTTTGACATTTGTGC+TGG | + | chr1_1:8838607-8838626 | Msa0006060:CDS | 45.0% | |
| CCTGCTTTGACATTTGTGCT+GGG | + | chr1_1:8838608-8838627 | Msa0006060:CDS | 45.0% | |
| !! | TAGGGGGTAGTGGAAAATGT+AGG | + | chr1_1:8838841-8838860 | Msa0006060:intron | 45.0% |
| TGCTGAATACAGGCAATTCC+AGG | + | chr1_1:8839556-8839575 | Msa0006060:intron | 45.0% | |
| ACTCCTGCATATTCAAAGGG+AGG | - | chr1_1:8839878-8839897 | None:intergenic | 45.0% | |
| GGTGCAGTGGCTTCAATAAT+AGG | + | chr1_1:8839921-8839940 | Msa0006060:CDS | 45.0% | |
| ! | GGCCTTATATCAAAATGGGG+TGG | + | chr1_1:8840230-8840249 | Msa0006060:CDS | 45.0% |
| GAAGGAATCAACTCCTCGTA+AGG | - | chr1_1:8840383-8840402 | None:intergenic | 45.0% | |
| TCGGTTAGAATGCCCCAGAT+AGG | - | chr1_1:8837604-8837623 | None:intergenic | 50.0% | |
| ! | AACCGACGCTTTTCCGGTAA+TGG | + | chr1_1:8837618-8837637 | Msa0006060:CDS | 50.0% |
| ! | ACCGACGCTTTTCCGGTAAT+GGG | + | chr1_1:8837619-8837638 | Msa0006060:CDS | 50.0% |
| ! | TCCCATTACCGGAAAAGCGT+CGG | - | chr1_1:8837623-8837642 | None:intergenic | 50.0% |
| CTCCGACGATATCCCATTAC+CGG | - | chr1_1:8837634-8837653 | None:intergenic | 50.0% | |
| GGTGTCTGCTACGATTGTTG+CGG | + | chr1_1:8837687-8837706 | Msa0006060:CDS | 50.0% | |
| TCTGCTACGATTGTTGCGGT+TGG | + | chr1_1:8837691-8837710 | Msa0006060:CDS | 50.0% | |
| !!! | GCGGCGTTGATGTGTTTTGT+TGG | + | chr1_1:8837733-8837752 | Msa0006060:CDS | 50.0% |
| TGCAAATCAGGAGCCAAACC+AGG | - | chr1_1:8837829-8837848 | None:intergenic | 50.0% | |
| !! | TCTGGTTCTGGTGCTCTTCT+TGG | + | chr1_1:8837868-8837887 | Msa0006060:CDS | 50.0% |
| !! | TTAGGGGTCGCTTGGTCTTA+TGG | + | chr1_1:8838577-8838596 | Msa0006060:intron | 50.0% |
| CCCAGCACAAATGTCAAAGC+AGG | - | chr1_1:8838611-8838630 | None:intergenic | 50.0% | |
| AGAGATGGCTTCCATGCTTG+AGG | - | chr1_1:8838904-8838923 | None:intergenic | 50.0% | |
| ! | GAGGTACCTGAGAGAATGCA+GGG | - | chr1_1:8839005-8839024 | None:intergenic | 50.0% |
| !! | AGAGGTACCTGAGAGAATGC+AGG | - | chr1_1:8839006-8839025 | None:intergenic | 50.0% |
| TGGTTACCTGCAGTGACTAC+CGG | + | chr1_1:8839150-8839169 | Msa0006060:intron | 50.0% | |
| ! | CGAGGAGTTGATTCCTTCTG+AGG | + | chr1_1:8840385-8840404 | Msa0006060:CDS | 50.0% |
| GGTATAGGCCAAGGCTTCAC+AGG | + | chr1_1:8837469-8837488 | Msa0006060:CDS | 55.0% | |
| AGAGTGAGCCTGTGAAGCCT+TGG | - | chr1_1:8837480-8837499 | None:intergenic | 55.0% | |
| !! | CGGTAATGGGATATCGTCGG+AGG | + | chr1_1:8837632-8837651 | Msa0006060:CDS | 55.0% |
| CGTTGCTGGAGTTGTTGGGA+CGG | + | chr1_1:8837666-8837685 | Msa0006060:CDS | 55.0% | |
| GCTACGATTGTTGCGGTTGG+AGG | + | chr1_1:8837694-8837713 | Msa0006060:CDS | 55.0% | |
| GATTGTTGCGGTTGGAGGTG+AGG | + | chr1_1:8837699-8837718 | Msa0006060:CDS | 55.0% | |
| AGGTGAGGTGAGTGTGGTTG+CGG | + | chr1_1:8837714-8837733 | Msa0006060:CDS | 55.0% | |
| GGTTACCTGCAGTGACTACC+GGG | + | chr1_1:8839151-8839170 | Msa0006060:intron | 55.0% | |
| GAAATCCCGGTAGTCACTGC+AGG | - | chr1_1:8839159-8839178 | None:intergenic | 55.0% | |
| GGTTGGAGGTGAGGTGAGTG+TGG | + | chr1_1:8837708-8837727 | Msa0006060:CDS | 60.0% | |
| !! | GGGGTCGCTTGGTCTTATGG+CGG | + | chr1_1:8838580-8838599 | Msa0006060:intron | 60.0% |
| AGTCGGCCCTGCATTCTCTC+AGG | + | chr1_1:8838996-8839015 | Msa0006060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8837322 | 8840487 | 8837322 | ID=Msa0006060;Name=Msa0006060 |
| chr1_1 | mRNA | 8837322 | 8840487 | 8837322 | ID=Msa0006060-mRNA-1;Parent=Msa0006060;Name=Msa0006060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.5|1|1|1|4|0|493 |
| chr1_1 | exon | 8837322 | 8837933 | 8837322 | ID=Msa0006060-mRNA-1:exon:3109;Parent=Msa0006060-mRNA-1 |
| chr1_1 | exon | 8838581 | 8838682 | 8838581 | ID=Msa0006060-mRNA-1:exon:3110;Parent=Msa0006060-mRNA-1 |
| chr1_1 | exon | 8838844 | 8839017 | 8838844 | ID=Msa0006060-mRNA-1:exon:3111;Parent=Msa0006060-mRNA-1 |
| chr1_1 | exon | 8839894 | 8840487 | 8839894 | ID=Msa0006060-mRNA-1:exon:3112;Parent=Msa0006060-mRNA-1 |
| chr1_1 | CDS | 8837322 | 8837933 | 8837322 | ID=Msa0006060-mRNA-1:cds;Parent=Msa0006060-mRNA-1 |
| chr1_1 | CDS | 8838581 | 8838682 | 8838581 | ID=Msa0006060-mRNA-1:cds;Parent=Msa0006060-mRNA-1 |
| chr1_1 | CDS | 8838844 | 8839017 | 8838844 | ID=Msa0006060-mRNA-1:cds;Parent=Msa0006060-mRNA-1 |
| chr1_1 | CDS | 8839894 | 8840487 | 8839894 | ID=Msa0006060-mRNA-1:cds;Parent=Msa0006060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
