AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0039020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039020 MtrunA17_Chr1g0202801 91.860 258 12 1 1 249 1 258 2.50e-162 449
Msa0039020 MtrunA17_Chr7g0274161 47.619 63 26 1 77 139 59 114 4.05e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0039020 AT5G52440.1 58.036 224 72 8 31 238 42 259 1.02e-66 207

Find 84 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1_1:+68520687 None:intergenic
TTAAGAGCAAAGTGAATTTC+TGG 0.180837 1_1:-68526250 Msa0039020:five_prime_UTR
GCCCCTGAAGCTCTTGTAAT+TGG 0.190403 1_1:-68525792 Msa0039020:CDS
TGGTTTATGCGTCTCTCTTT+GGG 0.224648 1_1:-68525821 Msa0039020:CDS
CCGGGTAATGAACTGATAAT+TGG 0.230141 1_1:+68520635 None:intergenic
TTGGAATGGTTTGAAGAATC+TGG 0.237555 1_1:-68525988 Msa0039020:CDS
GTGGTTTATGCGTCTCTCTT+TGG 0.244905 1_1:-68525822 Msa0039020:CDS
CCCCTGAAGCTCTTGTAATT+GGG 0.280358 1_1:-68525791 Msa0039020:CDS
GCCGGCAGTTGCCCACATTC+CGG 0.285229 1_1:+68520616 None:intergenic
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1_1:-68523445 Msa0039020:intron
GAACATGTTCCTCCTAGTTT+AGG 0.340162 1_1:+68526068 None:intergenic
ACCCCAATTACAAGAGCTTC+AGG 0.344512 1_1:+68525789 None:intergenic
CCGGCAGTTGCCCACATTCC+GGG 0.352588 1_1:+68520617 None:intergenic
CTGACCTCAGCAAGACCTTT+AGG 0.358065 1_1:+68525744 None:intergenic
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1_1:-68520685 Msa0039020:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1_1:+68520702 None:intergenic
ATTTGATGTTGCAGTTGCTT+TGG 0.398510 1_1:+68526175 None:intergenic
GCCATTAGATTCTTAGAGAT+AGG 0.398583 1_1:-68526211 Msa0039020:five_prime_UTR
TCCTATCTCTAAGAATCTAA+TGG 0.411043 1_1:+68526210 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1_1:-68520893 Msa0039020:CDS
TTGATGTATTGAATGATGTT+TGG 0.433944 1_1:+68526146 None:intergenic
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1_1:+68523395 None:intergenic
CGGGTAATGAACTGATAATT+GGG 0.441172 1_1:+68520636 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1_1:-68523264 Msa0039020:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1_1:+68523216 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1_1:-68523257 Msa0039020:CDS
GAATTGTCATTTGAAGATAC+AGG 0.452864 1_1:-68520419 Msa0039020:three_prime_UTR
TAAGAGCAAAGTGAATTTCT+GGG 0.457286 1_1:-68526249 Msa0039020:five_prime_UTR
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1_1:+68520696 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1_1:+68523215 None:intergenic
TGGAATGGTTTGAAGAATCT+GGG 0.464571 1_1:-68525987 Msa0039020:CDS
CCCGGAATGTGGGCAACTGC+CGG 0.473002 1_1:-68520617 Msa0039020:three_prime_UTR
TATGCGTCTCTCTTTGGGGT+GGG 0.475454 1_1:-68525816 Msa0039020:CDS
ACCCACCATTAGAGAGATCC+AGG 0.479518 1_1:-68523400 Msa0039020:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1_1:+68520949 None:intergenic
TAGAGAAGGAAGAGAGAGGG+AGG 0.481971 1_1:+68520473 None:intergenic
TAGATTCTTAGAGATAGGAT+TGG 0.486220 1_1:-68526206 Msa0039020:five_prime_UTR
GATAGAAAGGGTCGGTGTAA+AGG 0.500755 1_1:-68525849 Msa0039020:CDS
CCCTGAAGCTCTTGTAATTG+GGG 0.510021 1_1:-68525790 Msa0039020:CDS
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1_1:+68520699 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1_1:+68523252 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1_1:+68520674 None:intergenic
CCAATTATCAGTTCATTACC+CGG 0.519731 1_1:-68520635 Msa0039020:three_prime_UTR
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1_1:-68523444 Msa0039020:intron
CCCCAATTACAAGAGCTTCA+GGG 0.521995 1_1:+68525790 None:intergenic
CCCAATTACAAGAGCTTCAG+GGG 0.523540 1_1:+68525791 None:intergenic
AATAAATGATGTGACATGGC+AGG 0.524985 1_1:+68526272 None:intergenic
AAAGACGGTGACCCAATGAA+TGG 0.530058 1_1:+68526018 None:intergenic
TAGAGATAGGATTGGAGCAA+GGG 0.536347 1_1:-68526198 Msa0039020:five_prime_UTR
TCAGTTCATTACCCGGAATG+TGG 0.536688 1_1:-68520628 Msa0039020:three_prime_UTR
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1_1:-68523265 Msa0039020:CDS
GCAAAGTGAATTTCTGGGAA+GGG 0.553693 1_1:-68526244 Msa0039020:five_prime_UTR
CAAAATTGATTACACTATGC+CGG 0.556553 1_1:+68520598 None:intergenic
TTATAGAGAAGGAAGAGAGA+GGG 0.560302 1_1:+68520470 None:intergenic
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1_1:+68523148 None:intergenic
GGTTTATGCGTCTCTCTTTG+GGG 0.565629 1_1:-68525820 Msa0039020:CDS
GATTACAGAAGAGCAACTAA+AGG 0.568988 1_1:-68520914 Msa0039020:CDS
TTATGCGTCTCTCTTTGGGG+TGG 0.571962 1_1:-68525817 Msa0039020:CDS
CTATCCACTGATAGTACCAA+TGG 0.572724 1_1:-68523164 Msa0039020:CDS
CAGTTCATTACCCGGAATGT+GGG 0.575890 1_1:-68520627 Msa0039020:three_prime_UTR
CGTACTTCTTATGAATCCAA+AGG 0.578325 1_1:+68520669 None:intergenic
AGCAAAGTGAATTTCTGGGA+AGG 0.582768 1_1:-68526245 Msa0039020:five_prime_UTR
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1_1:+68523399 None:intergenic
TTAGAGATAGGATTGGAGCA+AGG 0.583915 1_1:-68526199 Msa0039020:five_prime_UTR
AACCTGGATCTCTCTAATGG+TGG 0.586086 1_1:+68523398 None:intergenic
TGGTCCTAAAGGTCTTGCTG+AGG 0.586660 1_1:-68525748 Msa0039020:intron
ATGTTATTATGTCCTAAACT+AGG 0.587873 1_1:-68526080 Msa0039020:CDS
AGAACCATTGGTACTATCAG+TGG 0.590932 1_1:+68523160 None:intergenic
GAACAGCAAAGTCAACCTCC+TGG 0.592669 1_1:-68520838 Msa0039020:intron
CTATAACAATGTAGATGGGA+AGG 0.593214 1_1:-68520977 Msa0039020:intron
AGATTCTTCAAACCATTCCA+AGG 0.595262 1_1:+68525990 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1_1:+68523193 None:intergenic
TTGGTACTATCAGTGGATAG+TGG 0.606201 1_1:+68523167 None:intergenic
TTTACACAACTCAAGTGACT+CGG 0.608976 1_1:+68520569 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1_1:+68523253 None:intergenic
CATTCCAAGGAGAGAAAAGA+CGG 0.620612 1_1:+68526003 None:intergenic
CTTAAATAAATGATGTGACA+TGG 0.625387 1_1:+68526268 None:intergenic
AGTGGATAGTGGAGCTGATG+TGG 0.629238 1_1:+68523178 None:intergenic
GTTATAGAGAAGGAAGAGAG+AGG 0.639426 1_1:+68520469 None:intergenic
TTATTATGTCCTAAACTAGG+AGG 0.663899 1_1:-68526077 Msa0039020:CDS
TAGTTTAGGACATAATAACA+TGG 0.692470 1_1:+68526082 None:intergenic
ACACAACTCAAGTGACTCGG+AGG 0.692637 1_1:+68520572 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1_1:-68520947 Msa0039020:CDS
GGGTCGGTGTAAAGGTAACG+TGG 0.723610 1_1:-68525841 Msa0039020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAACTATTTTTTTTTGAAA+CGG - chr1_1:68523970-68523989 Msa0039020:intron 10.0%
!!! CAATTCTATTTTATTTTTTA+TGG + chr1_1:68526232-68526251 None:intergenic 10.0%
!! AATTGGATATTAATTAGAAT+TGG + chr1_1:68521714-68521733 None:intergenic 15.0%
!!! TATTTTGTAAAATGTATAGA+GGG + chr1_1:68522738-68522757 None:intergenic 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG - chr1_1:68523561-68523580 Msa0039020:intron 15.0%
!!! ATACGAAAAAATGGTTTTTT+GGG + chr1_1:68520717-68520736 None:intergenic 20.0%
!!! AATACGAAAAAATGGTTTTT+TGG + chr1_1:68520718-68520737 None:intergenic 20.0%
!!! AAACCATTTTTTCGTATTAT+AGG - chr1_1:68520720-68520739 Msa0039020:CDS 20.0%
!! ATACCTATAATACGAAAAAA+TGG + chr1_1:68520726-68520745 None:intergenic 20.0%
!! CAAATTAATCTGAATTACAT+AGG + chr1_1:68520989-68521008 None:intergenic 20.0%
!! AATGAATTATGAACACTTTA+AGG - chr1_1:68521625-68521644 Msa0039020:intron 20.0%
!! TTTATATCAATGTTCATTGA+AGG + chr1_1:68521910-68521929 None:intergenic 20.0%
!!! ACATAAAAGTAACAACTTTT+GGG + chr1_1:68522371-68522390 None:intergenic 20.0%
!!! AACATAAAAGTAACAACTTT+TGG + chr1_1:68522372-68522391 None:intergenic 20.0%
!! AATGTATAATAATACTTTCG+TGG - chr1_1:68522602-68522621 Msa0039020:intron 20.0%
!! GTCAAAAAAACAAAGATATA+CGG + chr1_1:68522690-68522709 None:intergenic 20.0%
!!! TGTTTTTTTGACATTGTTTA+AGG - chr1_1:68522698-68522717 Msa0039020:intron 20.0%
!!! GTTTTTTTGACATTGTTTAA+GGG - chr1_1:68522699-68522718 Msa0039020:intron 20.0%
!!! CTATTTTGTAAAATGTATAG+AGG + chr1_1:68522739-68522758 None:intergenic 20.0%
!! TCTCATTCAAAAATAATCAT+TGG + chr1_1:68522855-68522874 None:intergenic 20.0%
!!! CAAAGTTTTGCTTATAATAA+TGG - chr1_1:68523046-68523065 Msa0039020:intron 20.0%
!!! AAAATAATTGTTGTTGCTAT+TGG - chr1_1:68523091-68523110 Msa0039020:intron 20.0%
!!! TTCTAGTTTACTTTTTTGAT+AGG - chr1_1:68523182-68523201 Msa0039020:CDS 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1_1:68523559-68523578 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1_1:68523562-68523581 Msa0039020:intron 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1_1:68523624-68523643 None:intergenic 20.0%
!!! TAGTTTTCAATTATAACCAT+TGG + chr1_1:68523957-68523976 None:intergenic 20.0%
!! TGGAGAAAAAAATACAATAA+GGG - chr1_1:68524043-68524062 Msa0039020:intron 20.0%
!! ATAACTTGGAAATCTAATAA+TGG + chr1_1:68524416-68524435 None:intergenic 20.0%
!! AATAGAACATGATAAAAATG+AGG - chr1_1:68524569-68524588 Msa0039020:intron 20.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1_1:68525141-68525160 Msa0039020:intron 20.0%
!!! AGTTTAATTTTGGCTATAAA+AGG - chr1_1:68525523-68525542 Msa0039020:intron 20.0%
!!! GTTTAATTTTGGCTATAAAA+GGG - chr1_1:68525524-68525543 Msa0039020:intron 20.0%
!!! TTTAATTTTGGCTATAAAAG+GGG - chr1_1:68525525-68525544 Msa0039020:intron 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1_1:68525683-68525702 Msa0039020:intron 20.0%
!! ATATCTATAACAATGTAGAT+GGG - chr1_1:68525684-68525703 Msa0039020:intron 20.0%
! CTTAAATAAATGATGTGACA+TGG + chr1_1:68520400-68520419 None:intergenic 25.0%
! TTGATGTATTGAATGATGTT+TGG + chr1_1:68520522-68520541 None:intergenic 25.0%
!! TAGTTTAGGACATAATAACA+TGG + chr1_1:68520586-68520605 None:intergenic 25.0%
! ATGTTATTATGTCCTAAACT+AGG - chr1_1:68520585-68520604 Msa0039020:three_prime_UTR 25.0%
! TGAATGGAGATAAAAATGTT+GGG + chr1_1:68520634-68520653 None:intergenic 25.0%
! ATGAATGGAGATAAAAATGT+TGG + chr1_1:68520635-68520654 None:intergenic 25.0%
!! ACATTTTTATCTCCATTCAT+TGG - chr1_1:68520635-68520654 Msa0039020:three_prime_UTR 25.0%
!! CATTTTTATCTCCATTCATT+GGG - chr1_1:68520636-68520655 Msa0039020:three_prime_UTR 25.0%
!! TCAACTTCTATTATCTCTTT+TGG - chr1_1:68520757-68520776 Msa0039020:intron 25.0%
!! CAACTTCTATTATCTCTTTT+GGG - chr1_1:68520758-68520777 Msa0039020:intron 25.0%
!! TACTCATTTTGTAGATAGAA+AGG - chr1_1:68520803-68520822 Msa0039020:intron 25.0%
!! ACTCATTTTGTAGATAGAAA+GGG - chr1_1:68520804-68520823 Msa0039020:intron 25.0%
! CATACTATTTCACTTTGTTA+AGG - chr1_1:68521070-68521089 Msa0039020:intron 25.0%
! TTATCACTTTCTGATTTATG+TGG - chr1_1:68521121-68521140 Msa0039020:intron 25.0%
! CTTATTTCGATAGATTCTTT+AGG + chr1_1:68521288-68521307 None:intergenic 25.0%
! TCTAATTGATATCTAACACT+TGG + chr1_1:68521477-68521496 None:intergenic 25.0%
! AATTAGTTGAATACTGTTTG+AGG - chr1_1:68521496-68521515 Msa0039020:intron 25.0%
! AGTTGTCATTAGTTATTAGT+TGG + chr1_1:68521662-68521681 None:intergenic 25.0%
! ACATGTTATTGACATTAGAA+AGG - chr1_1:68521821-68521840 Msa0039020:intron 25.0%
! ATTGTGAATATTTACGTTTG+TGG - chr1_1:68522021-68522040 Msa0039020:intron 25.0%
!!! TGTTAATTTTCAAGCAGATT+TGG + chr1_1:68522126-68522145 None:intergenic 25.0%
! AGAAAATATGAACTATGAAG+CGG + chr1_1:68522174-68522193 None:intergenic 25.0%
! GAATATGTATATTCATACAG+TGG - chr1_1:68522420-68522439 Msa0039020:intron 25.0%
! TGGACATGAAATTAATAACT+GGG - chr1_1:68522440-68522459 Msa0039020:intron 25.0%
! ATGCTACAAATAAGTTTGAA+AGG - chr1_1:68522510-68522529 Msa0039020:intron 25.0%
! TGCTACAAATAAGTTTGAAA+GGG - chr1_1:68522511-68522530 Msa0039020:intron 25.0%
! ACATTTAGTATTACGAATGA+AGG + chr1_1:68522587-68522606 None:intergenic 25.0%
! ATTATTTATACCCTGAATGT+CGG + chr1_1:68522819-68522838 None:intergenic 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1_1:68523308-68523327 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1_1:68523563-68523582 Msa0039020:intron 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1_1:68523695-68523714 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1_1:68523853-68523872 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1_1:68523854-68523873 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1_1:68523891-68523910 Msa0039020:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1_1:68523946-68523965 None:intergenic 25.0%
! GTGGAGAAAAAAATACAATA+AGG - chr1_1:68524042-68524061 Msa0039020:intron 25.0%
! GGAGAAAAAAATACAATAAG+GGG - chr1_1:68524044-68524063 Msa0039020:intron 25.0%
! AAAATACAATAAGGGGAAAT+CGG - chr1_1:68524051-68524070 Msa0039020:intron 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1_1:68524342-68524361 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1_1:68524343-68524362 None:intergenic 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1_1:68524344-68524363 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1_1:68524345-68524364 Msa0039020:intron 25.0%
! AACAAACTTCAATGATAACT+TGG + chr1_1:68524430-68524449 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1_1:68524774-68524793 Msa0039020:intron 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1_1:68524820-68524839 Msa0039020:intron 25.0%
!! ATATGTCATTTGTGACTATA+TGG + chr1_1:68525049-68525068 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1_1:68525287-68525306 None:intergenic 25.0%
!!! GTAAGGGTTTAGTTTAATTT+TGG - chr1_1:68525513-68525532 Msa0039020:intron 25.0%
! GGGTTTAAAAACAAAGTAAT+GGG - chr1_1:68525566-68525585 Msa0039020:intron 25.0%
!! AACATGATTGGTAATTTGAT+GGG + chr1_1:68525641-68525660 None:intergenic 25.0%
!! AAACATGATTGGTAATTTGA+TGG + chr1_1:68525642-68525661 None:intergenic 25.0%
TTAAGAGCAAAGTGAATTTC+TGG - chr1_1:68520415-68520434 Msa0039020:three_prime_UTR 30.0%
TAAGAGCAAAGTGAATTTCT+GGG - chr1_1:68520416-68520435 Msa0039020:three_prime_UTR 30.0%
! TCCTATCTCTAAGAATCTAA+TGG + chr1_1:68520458-68520477 None:intergenic 30.0%
TAGATTCTTAGAGATAGGAT+TGG - chr1_1:68520459-68520478 Msa0039020:three_prime_UTR 30.0%
TTATTATGTCCTAAACTAGG+AGG - chr1_1:68520588-68520607 Msa0039020:three_prime_UTR 30.0%
! ATTTTGTAGATAGAAAGGGT+CGG - chr1_1:68520808-68520827 Msa0039020:intron 30.0%
!!! GTTGTTGCTTTGTTAGTTTT+TGG - chr1_1:68520897-68520916 Msa0039020:CDS 30.0%
!!! TTGTTAGTTTTTGGTCCTAA+AGG - chr1_1:68520906-68520925 Msa0039020:CDS 30.0%
ACTTTCTGATTTATGTGGTT+CGG - chr1_1:68521126-68521145 Msa0039020:intron 30.0%
TGCTTAAAATGCTATAAGAC+CGG + chr1_1:68521442-68521461 None:intergenic 30.0%
CACTTTATATAGTGATCCTA+AGG + chr1_1:68521569-68521588 None:intergenic 30.0%
AATTGGTTGAATGTTGTTCA+AGG + chr1_1:68521697-68521716 None:intergenic 30.0%
TCCAATTATATCTAACACCA+AGG - chr1_1:68521727-68521746 Msa0039020:intron 30.0%
!! ACCTTGGTGTTAGATATAAT+TGG + chr1_1:68521731-68521750 None:intergenic 30.0%
!! ACAATTCTAGAGTGTTTAGT+TGG - chr1_1:68521847-68521866 Msa0039020:intron 30.0%
TGATACACAAACAAGCTATA+GGG + chr1_1:68521946-68521965 None:intergenic 30.0%
TTGATACACAAACAAGCTAT+AGG + chr1_1:68521947-68521966 None:intergenic 30.0%
! TGAATTTATCTGTTGCTTAG+TGG + chr1_1:68522204-68522223 None:intergenic 30.0%
ACTAAGCAACAGATAAATTC+AGG - chr1_1:68522203-68522222 Msa0039020:intron 30.0%
GTGGACATGAAATTAATAAC+TGG - chr1_1:68522439-68522458 Msa0039020:intron 30.0%
! GACATTTTATTCAATTGCCA+AGG + chr1_1:68522489-68522508 None:intergenic 30.0%
GCTACAAATAAGTTTGAAAG+GGG - chr1_1:68522512-68522531 Msa0039020:intron 30.0%
AAGCTTAGTATCATGAATGA+AGG + chr1_1:68522656-68522675 None:intergenic 30.0%
CAAAGATATACGGATATGTT+CGG + chr1_1:68522680-68522699 None:intergenic 30.0%
TTTGACATTGTTTAAGGGAA+AGG - chr1_1:68522704-68522723 Msa0039020:intron 30.0%
ATTGTTTAAGGGAAAGGATA+AGG - chr1_1:68522710-68522729 Msa0039020:intron 30.0%
TGAGATTCACTTTAGATAGT+TGG - chr1_1:68522870-68522889 Msa0039020:intron 30.0%
TGTATCTAATAAGCCTCAAA+GGG + chr1_1:68522914-68522933 None:intergenic 30.0%
TTGTATCTAATAAGCCTCAA+AGG + chr1_1:68522915-68522934 None:intergenic 30.0%
! GTTTTGCTTATAATAATGGC+CGG - chr1_1:68523050-68523069 Msa0039020:intron 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1_1:68523286-68523305 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1_1:68523400-68523419 Msa0039020:intron 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1_1:68523658-68523677 None:intergenic 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1_1:68523696-68523715 None:intergenic 30.0%
CTAAATTCTTCTTCAACAGA+TGG + chr1_1:68523737-68523756 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG - chr1_1:68523745-68523764 Msa0039020:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1_1:68523852-68523871 None:intergenic 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1_1:68523855-68523874 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1_1:68523852-68523871 Msa0039020:intron 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1_1:68523895-68523914 Msa0039020:intron 30.0%
! TTGATTGGGTGGTTTTTAAA+GGG + chr1_1:68524109-68524128 None:intergenic 30.0%
! TTTGATTGGGTGGTTTTTAA+AGG + chr1_1:68524110-68524129 None:intergenic 30.0%
!! TTTGGGTGTTTCTTTTGATT+GGG + chr1_1:68524123-68524142 None:intergenic 30.0%
ACGCAAGAATATACATTTGA+CGG - chr1_1:68524151-68524170 Msa0039020:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1_1:68524375-68524394 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1_1:68524412-68524431 None:intergenic 30.0%
CTATCAATTGCCATATGATA+TGG - chr1_1:68524488-68524507 Msa0039020:intron 30.0%
ACCTCAATAACCATATCATA+TGG + chr1_1:68524501-68524520 None:intergenic 30.0%
CATACGGCAAAATAAAAGTA+AGG + chr1_1:68524722-68524741 None:intergenic 30.0%
AATGTCATTCTAGATGTAAG+TGG + chr1_1:68524806-68524825 None:intergenic 30.0%
AGAACGTTACAATAAATGAG+TGG - chr1_1:68524855-68524874 Msa0039020:intron 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1_1:68524937-68524956 Msa0039020:intron 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1_1:68524940-68524959 Msa0039020:intron 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1_1:68524941-68524960 Msa0039020:intron 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1_1:68525000-68525019 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1_1:68525239-68525258 None:intergenic 30.0%
!! TTTTGGGGAAAAAAGAGTAT+TGG + chr1_1:68525330-68525349 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG + chr1_1:68525345-68525364 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG + chr1_1:68525346-68525365 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG + chr1_1:68525347-68525366 None:intergenic 30.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1_1:68525349-68525368 Msa0039020:intron 30.0%
!! ATTATTTCTGCCATAGTGTA+AGG - chr1_1:68525496-68525515 Msa0039020:intron 30.0%
!! TTATTTCTGCCATAGTGTAA+GGG - chr1_1:68525497-68525516 Msa0039020:intron 30.0%
TAAACTAAACCCTTACACTA+TGG + chr1_1:68525509-68525528 None:intergenic 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1_1:68525565-68525584 Msa0039020:intron 30.0%
GGTGAAATAAGCATTTAAGA+AGG - chr1_1:68525587-68525606 Msa0039020:intron 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1_1:68525590-68525609 Msa0039020:intron 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1_1:68525653-68525672 None:intergenic 30.0%
!! TGTTCACTTTTGTCTTCTTT+AGG + chr1_1:68525812-68525831 None:intergenic 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1_1:68525845-68525864 None:intergenic 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1_1:68525848-68525867 None:intergenic 30.0%
TTCTTATGAATCCAAAGGTA+AGG + chr1_1:68525994-68526013 None:intergenic 30.0%
CAAAATTGATTACACTATGC+CGG + chr1_1:68526070-68526089 None:intergenic 30.0%
! TTTTATCGTCGTTATAGAGA+AGG + chr1_1:68526209-68526228 None:intergenic 30.0%
! GAATTGTCATTTGAAGATAC+AGG - chr1_1:68526246-68526265 Msa0039020:five_prime_UTR 30.0%
AATAAATGATGTGACATGGC+AGG + chr1_1:68520396-68520415 None:intergenic 35.0%
GCCATTAGATTCTTAGAGAT+AGG - chr1_1:68520454-68520473 Msa0039020:three_prime_UTR 35.0%
ATTTGATGTTGCAGTTGCTT+TGG + chr1_1:68520493-68520512 None:intergenic 35.0%
AGATTCTTCAAACCATTCCA+AGG + chr1_1:68520678-68520697 None:intergenic 35.0%
TTGGAATGGTTTGAAGAATC+TGG - chr1_1:68520677-68520696 Msa0039020:CDS 35.0%
TGGAATGGTTTGAAGAATCT+GGG - chr1_1:68520678-68520697 Msa0039020:CDS 35.0%
!! ATTTATGTGGTTCGGTACAT+AGG - chr1_1:68521134-68521153 Msa0039020:intron 35.0%
! TTATAGCATTTTAAGCAGCC+AGG - chr1_1:68521445-68521464 Msa0039020:intron 35.0%
! ACTTGTGATTAGTTGCTAGT+TGG - chr1_1:68521531-68521550 Msa0039020:intron 35.0%
AGAAGCAAAGGATGTCTATA+AGG - chr1_1:68521785-68521804 Msa0039020:intron 35.0%
AGTTGGAAAGAAGTTTCCTT+TGG - chr1_1:68521864-68521883 Msa0039020:intron 35.0%
AGTGACAATTGATAAGCCAA+AGG + chr1_1:68521883-68521902 None:intergenic 35.0%
ATCAGCATCTGGGTATTATT+TGG + chr1_1:68522085-68522104 None:intergenic 35.0%
AAATAATACCCAGATGCTGA+TGG - chr1_1:68522084-68522103 Msa0039020:intron 35.0%
! GCAGATTTGGTACATATTAC+AGG + chr1_1:68522113-68522132 None:intergenic 35.0%
GTAAAAAACCAAGATAGAGC+AGG + chr1_1:68522235-68522254 None:intergenic 35.0%
ATCTTAGTGACGGTTAAGAT+GGG + chr1_1:68522270-68522289 None:intergenic 35.0%
CGATCAATTCATCTTAGTGA+CGG + chr1_1:68522280-68522299 None:intergenic 35.0%
CGTCACTAAGATGAATTGAT+CGG - chr1_1:68522278-68522297 Msa0039020:intron 35.0%
ATTACGAATGAAGGAATCTC+AGG + chr1_1:68522578-68522597 None:intergenic 35.0%
ATGAAGGAATCACAGAACAT+GGG + chr1_1:68522640-68522659 None:intergenic 35.0%
AATGAAGGAATCACAGAACA+TGG + chr1_1:68522641-68522660 None:intergenic 35.0%
AGTAGAAGATAATGCATTGC+CGG - chr1_1:68522776-68522795 Msa0039020:intron 35.0%
TGAAAGTTATACCGACATTC+AGG - chr1_1:68522805-68522824 Msa0039020:intron 35.0%
GAAAGTTATACCGACATTCA+GGG - chr1_1:68522806-68522825 Msa0039020:intron 35.0%
TTGCTTATAATAGTGACCAG+AGG + chr1_1:68522938-68522957 None:intergenic 35.0%
TGTAAATAATGTACACCCTC+CGG + chr1_1:68523072-68523091 None:intergenic 35.0%
! ATTGTTGTTGCTATTGGTGA+TGG - chr1_1:68523097-68523116 Msa0039020:intron 35.0%
! TTGGTTGTTGTTATTGGTGA+TGG - chr1_1:68523147-68523166 Msa0039020:CDS 35.0%
!!! TTACTTTTTTGATAGGCCCT+CGG - chr1_1:68523189-68523208 Msa0039020:CDS 35.0%
AAATCAAAGAATCAACCGAG+TGG + chr1_1:68523340-68523359 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1_1:68523401-68523420 Msa0039020:CDS 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1_1:68523452-68523471 None:intergenic 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1_1:68523732-68523751 None:intergenic 35.0%
CATATATTCCCACTACAATC+AGG + chr1_1:68523827-68523846 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1_1:68523851-68523870 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1_1:68523938-68523957 Msa0039020:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1_1:68523942-68523961 None:intergenic 35.0%
!! TGATTGGGTGGTTTTTAAAG+GGG + chr1_1:68524108-68524127 None:intergenic 35.0%
! CTTTGGGTGTTTCTTTTGAT+TGG + chr1_1:68524124-68524143 None:intergenic 35.0%
TTCTTGCGTCATTACTCTTT+GGG + chr1_1:68524140-68524159 None:intergenic 35.0%
ATTCTTGCGTCATTACTCTT+TGG + chr1_1:68524141-68524160 None:intergenic 35.0%
AATTATCGTTATTGCTGCAC+TGG + chr1_1:68524241-68524260 None:intergenic 35.0%
GCCATATGATATGGTTATTG+AGG - chr1_1:68524497-68524516 Msa0039020:intron 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1_1:68524642-68524661 Msa0039020:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1_1:68524647-68524666 None:intergenic 35.0%
ACGGCAAAATAAAAGTAAGG+TGG + chr1_1:68524719-68524738 None:intergenic 35.0%
ACACAGATTGTGCATACATA+CGG + chr1_1:68524738-68524757 None:intergenic 35.0%
TTATTCTACTATCCTCCATC+TGG + chr1_1:68524971-68524990 None:intergenic 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1_1:68524987-68525006 Msa0039020:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG + chr1_1:68525078-68525097 None:intergenic 35.0%
ATATAGTCAATCCTACCTAG+TGG - chr1_1:68525077-68525096 Msa0039020:intron 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1_1:68525262-68525281 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1_1:68525317-68525336 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1_1:68525443-68525462 Msa0039020:intron 35.0%
CTATAACAATGTAGATGGGA+AGG - chr1_1:68525688-68525707 Msa0039020:intron 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1_1:68525751-68525770 Msa0039020:CDS 35.0%
!! ACTTTTGTCTTCTTTAGGAG+GGG + chr1_1:68525807-68525826 None:intergenic 35.0%
!! CACTTTTGTCTTCTTTAGGA+GGG + chr1_1:68525808-68525827 None:intergenic 35.0%
!! TCACTTTTGTCTTCTTTAGG+AGG + chr1_1:68525809-68525828 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1_1:68525895-68525914 None:intergenic 35.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1_1:68525981-68526000 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1_1:68525980-68525999 Msa0039020:CDS 35.0%
CGTACTTCTTATGAATCCAA+AGG + chr1_1:68525999-68526018 None:intergenic 35.0%
CGGGTAATGAACTGATAATT+GGG + chr1_1:68526032-68526051 None:intergenic 35.0%
CCAATTATCAGTTCATTACC+CGG - chr1_1:68526030-68526049 Msa0039020:CDS 35.0%
TTTACACAACTCAAGTGACT+CGG + chr1_1:68526099-68526118 None:intergenic 35.0%
TTATAGAGAAGGAAGAGAGA+GGG + chr1_1:68526198-68526217 None:intergenic 35.0%
! AGCAAAGTGAATTTCTGGGA+AGG - chr1_1:68520420-68520439 Msa0039020:three_prime_UTR 40.0%
! GCAAAGTGAATTTCTGGGAA+GGG - chr1_1:68520421-68520440 Msa0039020:three_prime_UTR 40.0%
TTAGAGATAGGATTGGAGCA+AGG - chr1_1:68520466-68520485 Msa0039020:three_prime_UTR 40.0%
TAGAGATAGGATTGGAGCAA+GGG - chr1_1:68520467-68520486 Msa0039020:three_prime_UTR 40.0%
GAACATGTTCCTCCTAGTTT+AGG + chr1_1:68520600-68520619 None:intergenic 40.0%
CATTCCAAGGAGAGAAAAGA+CGG + chr1_1:68520665-68520684 None:intergenic 40.0%
TGGTTTATGCGTCTCTCTTT+GGG - chr1_1:68520844-68520863 Msa0039020:CDS 40.0%
TTCGGTACATAGGTTGTGTT+TGG - chr1_1:68521144-68521163 Msa0039020:intron 40.0%
! TGAGTCTTTGAGAGAGCTTA+GGG + chr1_1:68521346-68521365 None:intergenic 40.0%
! TTGAGTCTTTGAGAGAGCTT+AGG + chr1_1:68521347-68521366 None:intergenic 40.0%
CTACTTTGCAAGAGAAGCAA+AGG - chr1_1:68521773-68521792 Msa0039020:intron 40.0%
! GGTATTATTTGGCTTCTTGG+AGG + chr1_1:68522074-68522093 None:intergenic 40.0%
! CTGGGTATTATTTGGCTTCT+TGG + chr1_1:68522077-68522096 None:intergenic 40.0%
GGATTAAACCTGCTCTATCT+TGG - chr1_1:68522224-68522243 Msa0039020:intron 40.0%
TCTTAGTGACGGTTAAGATG+GGG + chr1_1:68522269-68522288 None:intergenic 40.0%
CATCTTAGTGACGGTTAAGA+TGG + chr1_1:68522271-68522290 None:intergenic 40.0%
ACAGTGATACCATGTGTTCT+TGG - chr1_1:68522335-68522354 Msa0039020:intron 40.0%
TATCTGCATCCAAGAACACA+TGG + chr1_1:68522347-68522366 None:intergenic 40.0%
GGTATAACTTTCACAGCAAC+CGG + chr1_1:68522798-68522817 None:intergenic 40.0%
AATTCACTAGAGTCCCTTTG+AGG - chr1_1:68522898-68522917 Msa0039020:intron 40.0%
GGCTTATTAGATACAACCTC+TGG - chr1_1:68522919-68522938 Msa0039020:intron 40.0%
TTGCTTATAATAATGGCCGG+AGG - chr1_1:68523053-68523072 Msa0039020:intron 40.0%
TGCTTATAATAATGGCCGGA+GGG - chr1_1:68523054-68523073 Msa0039020:intron 40.0%
! CAAGGCTTGGTTGTTGTTAT+TGG - chr1_1:68523141-68523160 Msa0039020:CDS 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1_1:68523273-68523292 None:intergenic 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1_1:68523365-68523384 Msa0039020:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1_1:68523372-68523391 None:intergenic 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1_1:68523453-68523472 None:intergenic 40.0%
TTGGTACTATCAGTGGATAG+TGG + chr1_1:68523501-68523520 None:intergenic 40.0%
CTATCCACTGATAGTACCAA+TGG - chr1_1:68523501-68523520 Msa0039020:intron 40.0%
AGAACCATTGGTACTATCAG+TGG + chr1_1:68523508-68523527 None:intergenic 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1_1:68523545-68523564 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1_1:68523546-68523565 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1_1:68523758-68523777 Msa0039020:intron 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1_1:68523815-68523834 Msa0039020:intron 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1_1:68523816-68523835 Msa0039020:intron 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1_1:68523899-68523918 Msa0039020:intron 40.0%
AACTTTGTCCAACCATCCAA+TGG + chr1_1:68523910-68523929 None:intergenic 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1_1:68524610-68524629 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1_1:68524626-68524645 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1_1:68525095-68525114 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1_1:68525101-68525120 Msa0039020:intron 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1_1:68525202-68525221 None:intergenic 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1_1:68525203-68525222 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1_1:68525263-68525282 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1_1:68525389-68525408 Msa0039020:intron 40.0%
TTGTCATGTTTCAACCATGC+AGG + chr1_1:68525477-68525496 None:intergenic 40.0%
TTTGGCTATAAAAGGGGTGA+TGG - chr1_1:68525531-68525550 Msa0039020:intron 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1_1:68525806-68525825 None:intergenic 40.0%
ACCTTACTCTAAGCACGATT+TGG - chr1_1:68525910-68525929 Msa0039020:intron 40.0%
ACCAAATCGTGCTTAGAGTA+AGG + chr1_1:68525914-68525933 None:intergenic 40.0%
CCGGGTAATGAACTGATAAT+TGG + chr1_1:68526033-68526052 None:intergenic 40.0%
GTTATAGAGAAGGAAGAGAG+AGG + chr1_1:68526199-68526218 None:intergenic 40.0%
AAAGACGGTGACCCAATGAA+TGG + chr1_1:68520650-68520669 None:intergenic 45.0%
! CGTCTTTTCTCTCCTTGGAA+TGG - chr1_1:68520663-68520682 Msa0039020:exon 45.0%
GATAGAAAGGGTCGGTGTAA+AGG - chr1_1:68520816-68520835 Msa0039020:intron 45.0%
GTGGTTTATGCGTCTCTCTT+TGG - chr1_1:68520843-68520862 Msa0039020:CDS 45.0%
GGTTTATGCGTCTCTCTTTG+GGG - chr1_1:68520845-68520864 Msa0039020:CDS 45.0%
CCCAATTACAAGAGCTTCAG+GGG + chr1_1:68520877-68520896 None:intergenic 45.0%
CCCCTGAAGCTCTTGTAATT+GGG - chr1_1:68520874-68520893 Msa0039020:CDS 45.0%
CCCCAATTACAAGAGCTTCA+GGG + chr1_1:68520878-68520897 None:intergenic 45.0%
CCCTGAAGCTCTTGTAATTG+GGG - chr1_1:68520875-68520894 Msa0039020:CDS 45.0%
ACCCCAATTACAAGAGCTTC+AGG + chr1_1:68520879-68520898 None:intergenic 45.0%
TCCAAACAGACTCCTTGTCA+AGG - chr1_1:68521414-68521433 Msa0039020:intron 45.0%
TCCTTGACAAGGAGTCTGTT+TGG + chr1_1:68521418-68521437 None:intergenic 45.0%
! TTGGTGATATGAGCTGCCTT+AGG - chr1_1:68521550-68521569 Msa0039020:intron 45.0%
ACAGGTATCCATCAGCATCT+GGG + chr1_1:68522095-68522114 None:intergenic 45.0%
TACAGGTATCCATCAGCATC+TGG + chr1_1:68522096-68522115 None:intergenic 45.0%
TTAGTGACGGTTAAGATGGG+GGG + chr1_1:68522267-68522286 None:intergenic 45.0%
CTTAGTGACGGTTAAGATGG+GGG + chr1_1:68522268-68522287 None:intergenic 45.0%
CCTGCATTCAAAGAAACCGA+GGG + chr1_1:68523208-68523227 None:intergenic 45.0%
ACCTGCATTCAAAGAAACCG+AGG + chr1_1:68523209-68523228 None:intergenic 45.0%
AATGCAGGTTGCTCGAAATC+TGG - chr1_1:68523220-68523239 Msa0039020:CDS 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1_1:68523221-68523240 Msa0039020:CDS 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1_1:68523269-68523288 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1_1:68523270-68523289 None:intergenic 45.0%
! TTTGTTGTGCCAATGCCACT+CGG - chr1_1:68523322-68523341 Msa0039020:intron 45.0%
AAGAATCAACCGAGTGGCAT+TGG + chr1_1:68523334-68523353 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1_1:68523415-68523434 None:intergenic 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1_1:68523475-68523494 None:intergenic 45.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1_1:68523520-68523539 None:intergenic 45.0%
CTTATTAGTGCTTCTCGCAC+GGG + chr1_1:68524017-68524036 None:intergenic 45.0%
GCTTATTAGTGCTTCTCGCA+CGG + chr1_1:68524018-68524037 None:intergenic 45.0%
!! GCGAGAAGCACTAATAAGCT+CGG - chr1_1:68524019-68524038 Msa0039020:intron 45.0%
!! CGAGAAGCACTAATAAGCTC+GGG - chr1_1:68524020-68524039 Msa0039020:intron 45.0%
!! GGGTGTTTCTTTTGATTGGG+TGG + chr1_1:68524120-68524139 None:intergenic 45.0%
!! TCCTCTTTGGTATTGACGCA+GGG + chr1_1:68524190-68524209 None:intergenic 45.0%
TATCGTTATTGCTGCACTGG+TGG + chr1_1:68524238-68524257 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1_1:68524273-68524292 Msa0039020:intron 45.0%
TGCTATATGACTGACAGACC+AGG + chr1_1:68524294-68524313 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG - chr1_1:68525084-68525103 Msa0039020:intron 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1_1:68525091-68525110 None:intergenic 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1_1:68525089-68525108 Msa0039020:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1_1:68525190-68525209 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1_1:68525194-68525213 Msa0039020:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1_1:68525360-68525379 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1_1:68525360-68525379 Msa0039020:intron 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1_1:68525394-68525413 None:intergenic 45.0%
TTTCAACCATGCAGGCGATA+TGG + chr1_1:68525469-68525488 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1_1:68525537-68525556 Msa0039020:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1_1:68525538-68525557 Msa0039020:intron 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1_1:68525719-68525738 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1_1:68525718-68525737 Msa0039020:intron 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1_1:68525972-68525991 None:intergenic 45.0%
TCAGTTCATTACCCGGAATG+TGG - chr1_1:68526037-68526056 Msa0039020:CDS 45.0%
CAGTTCATTACCCGGAATGT+GGG - chr1_1:68526038-68526057 Msa0039020:CDS 45.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1_1:68524528-68524547 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1_1:68524911-68524930 Msa0039020:intron 5.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1_1:68524912-68524931 Msa0039020:intron 5.0%
! GTCACCGTCTTTTCTCTCCT+TGG - chr1_1:68520658-68520677 Msa0039020:exon 50.0%
! TTATGCGTCTCTCTTTGGGG+TGG - chr1_1:68520848-68520867 Msa0039020:CDS 50.0%
!! TATGCGTCTCTCTTTGGGGT+GGG - chr1_1:68520849-68520868 Msa0039020:CDS 50.0%
GCCCCTGAAGCTCTTGTAAT+TGG - chr1_1:68520873-68520892 Msa0039020:CDS 50.0%
TGGTCCTAAAGGTCTTGCTG+AGG - chr1_1:68520917-68520936 Msa0039020:CDS 50.0%
CTGACCTCAGCAAGACCTTT+AGG + chr1_1:68520924-68520943 None:intergenic 50.0%
! ATAAGACCGGCTCCTTGACA+AGG + chr1_1:68521429-68521448 None:intergenic 50.0%
! GCATTTTAAGCAGCCAGGAG+AGG - chr1_1:68521450-68521469 Msa0039020:intron 50.0%
TCTAACACTTGGACCTCTCC+TGG + chr1_1:68521466-68521485 None:intergenic 50.0%
CAAGTTGTCAAGAGCGACCT+TGG + chr1_1:68521747-68521766 None:intergenic 50.0%
AATTGCCAAGGAACCGCACA+TGG + chr1_1:68522477-68522496 None:intergenic 50.0%
CTTGTCCCACTAAGTGGGAT+CGG + chr1_1:68523125-68523144 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG + chr1_1:68523130-68523149 None:intergenic 50.0%
CCCTCGGTTTCTTTGAATGC+AGG - chr1_1:68523205-68523224 Msa0039020:CDS 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1_1:68523265-68523284 Msa0039020:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1_1:68523408-68523427 Msa0039020:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1_1:68523416-68523435 None:intergenic 50.0%
!! AGTGGATAGTGGAGCTGATG+TGG + chr1_1:68523490-68523509 None:intergenic 50.0%
! GAAGCACTAATAAGCTCGGG+TGG - chr1_1:68524023-68524042 Msa0039020:intron 50.0%
TCGGTTGCCATTCTATCACC+AGG - chr1_1:68524070-68524089 Msa0039020:intron 50.0%
GTTCGAGCCTGGTGATAGAA+TGG + chr1_1:68524080-68524099 None:intergenic 50.0%
! AAGGGGTTTTTGTTCGAGCC+TGG + chr1_1:68524091-68524110 None:intergenic 50.0%
!! CCTCTTTGGTATTGACGCAG+GGG + chr1_1:68524189-68524208 None:intergenic 50.0%
!! GTCCTCTTTGGTATTGACGC+AGG + chr1_1:68524191-68524210 None:intergenic 50.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1_1:68524953-68524972 Msa0039020:intron 50.0%
! GGCTATAAAAGGGGTGATGG+TGG - chr1_1:68525534-68525553 Msa0039020:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1_1:68525539-68525558 Msa0039020:intron 50.0%
GAACAGCAAAGTCAACCTCC+TGG - chr1_1:68525827-68525846 Msa0039020:CDS 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1_1:68525969-68525988 None:intergenic 50.0%
! ACACAACTCAAGTGACTCGG+AGG + chr1_1:68526096-68526115 None:intergenic 50.0%
TAGAGAAGGAAGAGAGAGGG+AGG + chr1_1:68526195-68526214 None:intergenic 50.0%
GGGTCGGTGTAAAGGTAACG+TGG - chr1_1:68520824-68520843 Msa0039020:intron 55.0%
CAGACTCCTTGTCAAGGAGC+CGG - chr1_1:68521420-68521439 Msa0039020:intron 55.0%
GGCTATCTGTGAGCCATGTG+CGG - chr1_1:68522461-68522480 Msa0039020:intron 55.0%
!! ATGGTGCCGATCCCACTTAG+TGG - chr1_1:68523116-68523135 Msa0039020:intron 55.0%
!! TGGTGCCGATCCCACTTAGT+GGG - chr1_1:68523117-68523136 Msa0039020:intron 55.0%
CGATCCCACTTAGTGGGACA+AGG - chr1_1:68523123-68523142 Msa0039020:intron 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG + chr1_1:68523131-68523150 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG - chr1_1:68523128-68523147 Msa0039020:intron 55.0%
CCCCTGCGTCAATACCAAAG+AGG - chr1_1:68524186-68524205 Msa0039020:intron 55.0%
! CGTTATTGCTGCACTGGTGG+TGG + chr1_1:68524235-68524254 None:intergenic 55.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1_1:68524956-68524975 Msa0039020:intron 55.0%
! GATTGGCCATATCGCCTGCA+TGG - chr1_1:68525460-68525479 Msa0039020:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1_1:68525540-68525559 Msa0039020:intron 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1_1:68525966-68525985 None:intergenic 55.0%
GTGAGCCATGTGCGGTTCCT+TGG - chr1_1:68522469-68522488 Msa0039020:intron 60.0%
GGGTCTTGCTGGGTCCTCTT+TGG + chr1_1:68524203-68524222 None:intergenic 60.0%
GAGTCGGTAGGGGTCTTGCT+GGG + chr1_1:68524213-68524232 None:intergenic 60.0%
!! ACTGGTGGTGGAGTCGGTAG+GGG + chr1_1:68524223-68524242 None:intergenic 60.0%
!! CACTGGTGGTGGAGTCGGTA+GGG + chr1_1:68524224-68524243 None:intergenic 60.0%
!! TGCTGCACTGGTGGTGGAGT+CGG + chr1_1:68524229-68524248 None:intergenic 60.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1_1:68525541-68525560 Msa0039020:intron 60.0%
TGCTTCTCGCACGGGCTCGT+CGG + chr1_1:68524009-68524028 None:intergenic 65.0%
GGAGTCGGTAGGGGTCTTGC+TGG + chr1_1:68524214-68524233 None:intergenic 65.0%
!! GCACTGGTGGTGGAGTCGGT+AGG + chr1_1:68524225-68524244 None:intergenic 65.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1_1:68525772-68525791 Msa0039020:CDS 65.0%
CCGGCAGTTGCCCACATTCC+GGG + chr1_1:68526051-68526070 None:intergenic 65.0%
CCCGGAATGTGGGCAACTGC+CGG - chr1_1:68526048-68526067 Msa0039020:CDS 65.0%
GCCGGCAGTTGCCCACATTC+CGG + chr1_1:68526052-68526071 None:intergenic 65.0%
!! GGGTGATGGTGGTGGGGGGT+GGG - chr1_1:68525545-68525564 Msa0039020:intron 70.0%
!! GGTGATGGTGGTGGGGGGTG+GGG - chr1_1:68525546-68525565 Msa0039020:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1_1:68525544-68525563 Msa0039020:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 68520386 68526301 68520386 ID=Msa0039020;Name=Msa0039020
chr1_1 mRNA 68520386 68526301 68520386 ID=Msa0039020-mRNA-1;Parent=Msa0039020;Name=Msa0039020-mRNA-1;_AED=0.11;_eAED=0.11;_QI=166|1|1|1|1|1|6|291|249
chr1_1 exon 68520386 68520747 68520386 ID=Msa0039020-mRNA-1:exon:22388;Parent=Msa0039020-mRNA-1
chr1_1 exon 68520839 68520985 68520839 ID=Msa0039020-mRNA-1:exon:22387;Parent=Msa0039020-mRNA-1
chr1_1 exon 68523141 68523300 68523141 ID=Msa0039020-mRNA-1:exon:22386;Parent=Msa0039020-mRNA-1
chr1_1 exon 68523401 68523460 68523401 ID=Msa0039020-mRNA-1:exon:22385;Parent=Msa0039020-mRNA-1
chr1_1 exon 68525749 68525870 68525749 ID=Msa0039020-mRNA-1:exon:22384;Parent=Msa0039020-mRNA-1
chr1_1 exon 68525946 68526301 68525946 ID=Msa0039020-mRNA-1:exon:22383;Parent=Msa0039020-mRNA-1
chr1_1 five_prime_UTR 68526136 68526301 68526136 ID=Msa0039020-mRNA-1:five_prime_utr;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68525946 68526135 68525946 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68525749 68525870 68525749 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68523401 68523460 68523401 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68523141 68523300 68523141 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68520839 68520985 68520839 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 CDS 68520677 68520747 68520677 ID=Msa0039020-mRNA-1:cds;Parent=Msa0039020-mRNA-1
chr1_1 three_prime_UTR 68520386 68520676 68520386 ID=Msa0039020-mRNA-1:three_prime_utr;Parent=Msa0039020-mRNA-1
Gene Sequence

>Msa0039020

ATGCTAACAGCAATTGCTTCTTCTAGTTCAACCATGTTATTATGTCCTAAACTAGGAGGAACATGTTCATATTCAAAAACCCAACATTTTTATCTCCATTCATTGGGTCACCGTCTTTTCTCTCCTTGGAATGGTTTGAAGAATCTGGGTTTCTCTATCAAGCCCAAAAAACCATTTTTTCGTATTATAGATAGAAAGGGTCGGTGTAAAGGTAACGTGGTTTATGCGTCTCTCTTTGGGGTGGGTGCCCCTGAAGCTCTTGTAATTGGGGTTGTTGCTTTGTTAGTTTTTGGTCCTAAAGGTCTTGCTGAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACTGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAATGGGAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGTGAACAGCAAAGTCAACCTCCTGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA

Protein sequence

>Msa0039020

MLTAIASSSSTMLLCPKLGGTCSYSKTQHFYLHSLGHRLFSPWNGLKNLGFSIKPKKPFFRIIDRKGRCKGNVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKSEQQSQPPANETSATVPPPQKPESESLPLDS*