Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058750 | XP_003588369.2 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 2.78e-172 | 484 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058750 | sp|O82316|TIP41_ARATH | 79.184 | 245 | 51 | 0 | 1 | 245 | 1 | 245 | 1.99e-132 | 376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058750 | G7IB33 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 1.33e-172 | 484 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008970 | Msa0058750 | 0.858234 | 9.475697e-63 | -8.615850e-47 |
| Msa0058750 | Msa0103600 | 0.828711 | 7.724113e-55 | -8.615850e-47 |
| Msa0058750 | Msa0158280 | 0.859538 | 3.859963e-63 | -8.615850e-47 |
| Msa0058750 | Msa0269980 | 0.800936 | 1.140847e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058750 | MtrunA17_Chr1g0146161 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 2.56e-176 | 484 |
| Msa0058750 | MtrunA17_Chr1g0146171 | 85.425 | 247 | 36 | 0 | 1 | 247 | 1 | 247 | 6.81e-155 | 430 |
| Msa0058750 | MtrunA17_Chr8g0340161 | 57.661 | 248 | 99 | 3 | 1 | 243 | 1 | 247 | 1.04e-91 | 270 |
| Msa0058750 | MtrunA17_Chr2g0331261 | 56.967 | 244 | 101 | 3 | 4 | 243 | 5 | 248 | 1.05e-89 | 265 |
| Msa0058750 | MtrunA17_Chr4g0030861 | 53.750 | 240 | 107 | 2 | 1 | 236 | 3 | 242 | 1.53e-81 | 244 |
| Msa0058750 | MtrunA17_Chr7g0264961 | 54.098 | 244 | 107 | 3 | 1 | 240 | 3 | 245 | 6.43e-80 | 240 |
| Msa0058750 | MtrunA17_Chr1g0212671 | 51.667 | 240 | 111 | 3 | 3 | 238 | 5 | 243 | 1.44e-79 | 239 |
| Msa0058750 | MtrunA17_Chr7g0222791 | 53.498 | 243 | 108 | 3 | 3 | 240 | 5 | 247 | 1.87e-78 | 236 |
| Msa0058750 | MtrunA17_Chr5g0399341 | 53.012 | 249 | 109 | 4 | 1 | 244 | 1 | 246 | 4.67e-78 | 235 |
| Msa0058750 | MtrunA17_Chr1g0188771 | 44.269 | 253 | 130 | 3 | 3 | 244 | 5 | 257 | 4.62e-70 | 216 |
| Msa0058750 | MtrunA17_Chr6g0478191 | 44.400 | 250 | 131 | 3 | 3 | 244 | 5 | 254 | 1.28e-67 | 209 |
| Msa0058750 | MtrunA17_Chr4g0020781 | 41.361 | 191 | 107 | 3 | 57 | 243 | 20 | 209 | 1.49e-41 | 141 |
| Msa0058750 | MtrunA17_Chr5g0426131 | 35.021 | 237 | 143 | 7 | 14 | 247 | 32 | 260 | 7.01e-34 | 122 |
| Msa0058750 | MtrunA17_Chr1g0199731 | 36.000 | 250 | 128 | 9 | 10 | 235 | 30 | 271 | 6.21e-33 | 121 |
| Msa0058750 | MtrunA17_Chr7g0264111 | 34.286 | 245 | 140 | 7 | 9 | 234 | 29 | 271 | 2.20e-32 | 119 |
| Msa0058750 | MtrunA17_Chr2g0326621 | 34.413 | 247 | 134 | 9 | 11 | 234 | 32 | 273 | 6.32e-32 | 118 |
| Msa0058750 | MtrunA17_Chr3g0145671 | 34.764 | 233 | 129 | 8 | 19 | 234 | 37 | 263 | 3.51e-31 | 116 |
| Msa0058750 | MtrunA17_Chr4g0006001 | 35.526 | 228 | 125 | 7 | 19 | 229 | 56 | 278 | 6.11e-30 | 113 |
| Msa0058750 | MtrunA17_Chr2g0284611 | 35.622 | 233 | 141 | 6 | 18 | 247 | 37 | 263 | 6.21e-30 | 112 |
| Msa0058750 | MtrunA17_Chr5g0397391 | 34.632 | 231 | 124 | 7 | 19 | 229 | 52 | 275 | 9.91e-30 | 112 |
| Msa0058750 | MtrunA17_Chr4g0001221 | 36.585 | 205 | 110 | 7 | 24 | 220 | 80 | 272 | 1.01e-29 | 113 |
| Msa0058750 | MtrunA17_Chr2g0333771 | 36.585 | 205 | 110 | 7 | 24 | 220 | 85 | 277 | 4.04e-29 | 111 |
| Msa0058750 | MtrunA17_Chr4g0029071 | 34.263 | 251 | 130 | 11 | 10 | 234 | 30 | 271 | 1.29e-28 | 109 |
| Msa0058750 | MtrunA17_Chr5g0435051 | 36.522 | 230 | 137 | 7 | 18 | 245 | 39 | 261 | 2.08e-28 | 108 |
| Msa0058750 | MtrunA17_Chr1g0201331 | 35.398 | 226 | 127 | 7 | 19 | 237 | 74 | 287 | 2.26e-28 | 109 |
| Msa0058750 | MtrunA17_Chr8g0386961 | 33.333 | 231 | 127 | 7 | 19 | 229 | 52 | 275 | 4.29e-28 | 108 |
| Msa0058750 | MtrunA17_Chr3g0079421 | 37.788 | 217 | 126 | 7 | 18 | 232 | 25 | 234 | 9.03e-28 | 107 |
| Msa0058750 | MtrunA17_Chr5g0436701 | 35.586 | 222 | 124 | 7 | 19 | 224 | 55 | 273 | 3.01e-27 | 106 |
| Msa0058750 | MtrunA17_Chr3g0113211 | 33.333 | 228 | 137 | 6 | 11 | 224 | 47 | 273 | 5.38e-27 | 105 |
| Msa0058750 | MtrunA17_Chr2g0284591 | 33.906 | 233 | 145 | 6 | 18 | 247 | 35 | 261 | 1.24e-26 | 103 |
| Msa0058750 | MtrunA17_Chr2g0284631 | 33.190 | 232 | 139 | 9 | 18 | 244 | 90 | 310 | 2.36e-24 | 99.0 |
| Msa0058750 | MtrunA17_Chr7g0217331 | 34.434 | 212 | 131 | 5 | 19 | 228 | 37 | 242 | 2.14e-23 | 95.5 |
| Msa0058750 | MtrunA17_Chr8g0379901 | 32.558 | 215 | 136 | 6 | 18 | 229 | 38 | 246 | 6.96e-23 | 94.4 |
| Msa0058750 | MtrunA17_Chr8g0379911 | 32.093 | 215 | 137 | 6 | 18 | 229 | 37 | 245 | 4.46e-22 | 92.0 |
| Msa0058750 | MtrunA17_Chr2g0284581 | 32.524 | 206 | 130 | 6 | 18 | 220 | 37 | 236 | 7.10e-21 | 88.6 |
| Msa0058750 | MtrunA17_Chr4g0044201 | 32.727 | 220 | 118 | 7 | 18 | 229 | 34 | 231 | 1.10e-19 | 85.1 |
| Msa0058750 | MtrunA17_Chr1g0184541 | 30.769 | 221 | 144 | 6 | 19 | 237 | 62 | 275 | 9.54e-19 | 83.2 |
| Msa0058750 | MtrunA17_Chr2g0284601 | 34.043 | 188 | 117 | 5 | 36 | 220 | 5 | 188 | 1.03e-17 | 79.3 |
| Msa0058750 | MtrunA17_Chr4g0038591 | 27.481 | 262 | 157 | 8 | 10 | 247 | 42 | 294 | 1.90e-17 | 80.1 |
| Msa0058750 | MtrunA17_Chr4g0001111 | 35.172 | 145 | 78 | 5 | 24 | 161 | 80 | 215 | 2.73e-16 | 75.5 |
| Msa0058750 | MtrunA17_Chr4g0038611 | 32.178 | 202 | 108 | 7 | 67 | 245 | 35 | 230 | 3.56e-16 | 75.9 |
| Msa0058750 | MtrunA17_Chr4g0001161 | 32.847 | 137 | 76 | 5 | 32 | 161 | 1 | 128 | 6.04e-12 | 61.6 |
| Msa0058750 | MtrunA17_Chr6g0467461 | 31.132 | 106 | 54 | 2 | 125 | 230 | 4 | 90 | 1.80e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0058750 | AT2G25810.1 | 79.184 | 245 | 51 | 0 | 1 | 245 | 1 | 245 | 2.02e-133 | 376 |
| Msa0058750 | AT2G36830.1 | 56.198 | 242 | 102 | 2 | 3 | 240 | 5 | 246 | 3.27e-90 | 267 |
| Msa0058750 | AT3G16240.1 | 56.098 | 246 | 101 | 4 | 1 | 240 | 1 | 245 | 6.23e-90 | 266 |
| Msa0058750 | AT3G26520.1 | 55.556 | 234 | 100 | 2 | 7 | 236 | 10 | 243 | 6.45e-85 | 253 |
| Msa0058750 | AT5G47450.1 | 53.975 | 239 | 106 | 2 | 1 | 235 | 1 | 239 | 1.88e-83 | 249 |
| Msa0058750 | AT4G01470.1 | 51.822 | 247 | 114 | 3 | 3 | 244 | 5 | 251 | 5.51e-81 | 243 |
| Msa0058750 | AT4G17340.1 | 54.583 | 240 | 103 | 2 | 1 | 235 | 1 | 239 | 1.65e-79 | 239 |
| Msa0058750 | AT1G73190.1 | 48.638 | 257 | 114 | 3 | 6 | 244 | 11 | 267 | 2.41e-74 | 227 |
| Msa0058750 | AT1G17810.1 | 49.383 | 243 | 114 | 2 | 6 | 239 | 11 | 253 | 6.77e-71 | 218 |
| Msa0058750 | AT3G47440.1 | 42.466 | 219 | 121 | 3 | 16 | 230 | 20 | 237 | 3.20e-50 | 165 |
| Msa0058750 | AT4G35100.1 | 36.207 | 232 | 127 | 9 | 19 | 234 | 38 | 264 | 9.19e-33 | 120 |
| Msa0058750 | AT4G35100.2 | 36.207 | 232 | 127 | 9 | 19 | 234 | 38 | 264 | 9.19e-33 | 120 |
| Msa0058750 | AT5G60660.1 | 35.169 | 236 | 131 | 8 | 19 | 235 | 39 | 271 | 1.11e-32 | 120 |
| Msa0058750 | AT2G37180.1 | 35.270 | 241 | 132 | 8 | 10 | 229 | 28 | 265 | 1.33e-32 | 120 |
| Msa0058750 | AT2G37170.1 | 34.156 | 243 | 130 | 8 | 11 | 229 | 29 | 265 | 1.48e-32 | 120 |
| Msa0058750 | AT2G37170.2 | 34.156 | 243 | 130 | 8 | 11 | 229 | 72 | 308 | 1.60e-32 | 121 |
| Msa0058750 | AT3G54820.1 | 34.348 | 230 | 131 | 6 | 19 | 229 | 38 | 266 | 7.21e-32 | 118 |
| Msa0058750 | AT3G53420.1 | 34.783 | 230 | 130 | 7 | 19 | 229 | 39 | 267 | 2.84e-31 | 117 |
| Msa0058750 | AT3G53420.2 | 34.783 | 230 | 130 | 7 | 19 | 229 | 39 | 267 | 2.84e-31 | 117 |
| Msa0058750 | AT2G16850.1 | 34.914 | 232 | 130 | 9 | 19 | 234 | 36 | 262 | 9.22e-31 | 115 |
| Msa0058750 | AT2G39010.1 | 33.891 | 239 | 138 | 7 | 10 | 229 | 29 | 266 | 2.80e-30 | 114 |
| Msa0058750 | AT4G00430.1 | 36.123 | 227 | 125 | 8 | 19 | 229 | 53 | 275 | 7.69e-30 | 113 |
| Msa0058750 | AT1G80760.1 | 36.364 | 209 | 115 | 6 | 19 | 220 | 80 | 277 | 2.95e-29 | 112 |
| Msa0058750 | AT1G01620.1 | 35.242 | 227 | 127 | 8 | 19 | 229 | 52 | 274 | 7.32e-29 | 110 |
| Msa0058750 | AT4G23400.1 | 34.821 | 224 | 132 | 6 | 19 | 229 | 53 | 275 | 1.65e-28 | 109 |
| Msa0058750 | AT3G61430.2 | 36.444 | 225 | 117 | 8 | 19 | 224 | 52 | 269 | 4.62e-28 | 108 |
| Msa0058750 | AT3G61430.1 | 36.444 | 225 | 117 | 8 | 19 | 224 | 52 | 269 | 4.62e-28 | 108 |
| Msa0058750 | AT2G45960.1 | 36.444 | 225 | 117 | 8 | 19 | 224 | 52 | 269 | 4.92e-28 | 108 |
| Msa0058750 | AT4G10380.1 | 33.632 | 223 | 130 | 6 | 19 | 234 | 78 | 289 | 8.61e-27 | 105 |
| Msa0058750 | AT4G19030.1 | 35.294 | 221 | 129 | 7 | 18 | 229 | 54 | 269 | 2.11e-26 | 104 |
| Msa0058750 | AT5G37820.1 | 36.564 | 227 | 124 | 9 | 19 | 237 | 43 | 257 | 1.74e-25 | 101 |
| Msa0058750 | AT5G37820.2 | 36.087 | 230 | 126 | 9 | 19 | 240 | 79 | 295 | 3.14e-25 | 101 |
| Msa0058750 | AT4G18910.1 | 35.135 | 222 | 128 | 7 | 18 | 229 | 51 | 266 | 2.22e-24 | 99.0 |
| Msa0058750 | AT1G01620.2 | 34.615 | 182 | 101 | 6 | 62 | 229 | 25 | 202 | 2.32e-24 | 97.1 |
| Msa0058750 | AT5G37810.1 | 34.934 | 229 | 127 | 8 | 12 | 229 | 33 | 250 | 4.07e-24 | 98.2 |
| Msa0058750 | AT1G31885.1 | 35.160 | 219 | 116 | 8 | 18 | 221 | 42 | 249 | 2.14e-23 | 97.1 |
| Msa0058750 | AT1G52180.1 | 51.163 | 86 | 42 | 0 | 125 | 210 | 39 | 124 | 4.24e-23 | 91.3 |
| Msa0058750 | AT2G45960.2 | 34.123 | 211 | 113 | 8 | 19 | 210 | 52 | 255 | 9.80e-20 | 85.9 |
| Msa0058750 | AT2G45960.3 | 34.123 | 211 | 113 | 8 | 19 | 210 | 52 | 255 | 1.33e-19 | 86.3 |
| Msa0058750 | AT1G31885.2 | 34.146 | 205 | 109 | 8 | 31 | 220 | 1 | 194 | 2.19e-18 | 82.4 |
| Msa0058750 | AT2G34390.1 | 30.769 | 221 | 138 | 7 | 18 | 229 | 47 | 261 | 1.03e-17 | 80.9 |
| Msa0058750 | AT3G06100.1 | 30.374 | 214 | 144 | 5 | 18 | 230 | 45 | 254 | 1.20e-17 | 80.5 |
| Msa0058750 | AT3G06100.2 | 31.250 | 208 | 138 | 5 | 24 | 230 | 3 | 206 | 3.14e-17 | 78.2 |
| Msa0058750 | AT2G34390.2 | 30.876 | 217 | 137 | 6 | 21 | 229 | 8 | 219 | 7.31e-17 | 77.8 |
| Msa0058750 | AT4G00430.2 | 35.669 | 157 | 88 | 6 | 19 | 166 | 53 | 205 | 1.86e-15 | 73.6 |
| Msa0058750 | AT2G39010.2 | 32.544 | 169 | 101 | 5 | 10 | 166 | 29 | 196 | 1.00e-14 | 71.6 |
| Msa0058750 | AT4G19030.3 | 33.333 | 174 | 102 | 7 | 18 | 182 | 54 | 222 | 3.45e-12 | 64.3 |
| Msa0058750 | AT4G19030.2 | 32.895 | 152 | 92 | 5 | 18 | 161 | 54 | 203 | 9.97e-12 | 63.2 |
Find 86 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGCCTTTATAAAT+TGG | 0.183363 | 1_2:-15326442 | Msa0058750:five_prime_UTR |
| CCATCAAGTGCTCCTTTCTT+TGG | 0.185816 | 1_2:+15325308 | None:intergenic |
| ACCTTTCTCTTTGTCTTTGC+TGG | 0.204008 | 1_2:-15326268 | Msa0058750:CDS |
| ATGAACCCTGCAAGATCTTT+TGG | 0.224227 | 1_2:-15325212 | Msa0058750:CDS |
| CTGCTTTGGTTAGTGGAAAT+TGG | 0.234876 | 1_2:-15325187 | Msa0058750:CDS |
| GGTTGTTCCTAACGCAATTT+TGG | 0.235450 | 1_2:+15326345 | None:intergenic |
| GGACTGATCATTGGGTATAT+TGG | 0.255400 | 1_2:-15325166 | Msa0058750:CDS |
| TATTGGGTTGGACCACTTAT+TGG | 0.284221 | 1_2:-15325149 | Msa0058750:CDS |
| CTCTTTGTCTTTGCTGGTGT+TGG | 0.290840 | 1_2:-15326262 | Msa0058750:CDS |
| TTGAATCCCGCCGTGACTTT+GGG | 0.304849 | 1_2:-15325917 | Msa0058750:CDS |
| GGCCTTGGCCCAACCTTAGT+TGG | 0.309080 | 1_2:-15325287 | Msa0058750:CDS |
| TTTGAATCCCGCCGTGACTT+TGG | 0.311719 | 1_2:-15325918 | Msa0058750:CDS |
| CTTATTGGTGGTGGACTTGC+TGG | 0.315006 | 1_2:-15325134 | Msa0058750:CDS |
| TTTGGGCCTGCTTTGGTTAG+TGG | 0.316883 | 1_2:-15325194 | Msa0058750:CDS |
| CTTAGTTGGGTTTGTGGTGG+GGG | 0.319883 | 1_2:-15325273 | Msa0058750:CDS |
| ACCTTAGTTGGGTTTGTGGT+GGG | 0.325499 | 1_2:-15325275 | Msa0058750:CDS |
| GACTGATCATTGGGTATATT+GGG | 0.325693 | 1_2:-15325165 | Msa0058750:CDS |
| ATCTCCGCCGCTCATATTTC+CGG | 0.326476 | 1_2:-15325947 | Msa0058750:CDS |
| GGGGCTAACATCCTTGCTGG+TGG | 0.334049 | 1_2:-15325254 | Msa0058750:CDS |
| TCGTTCGTTCGATCCTATAT+TGG | 0.337543 | 1_2:-15325868 | Msa0058750:CDS |
| TATCTTCTTCATTATCTCTC+TGG | 0.355133 | 1_2:-15325812 | Msa0058750:CDS |
| GGGCTAACATCCTTGCTGGT+GGG | 0.361838 | 1_2:-15325253 | Msa0058750:CDS |
| CCCAACCTTAGTTGGGTTTG+TGG | 0.373101 | 1_2:-15325279 | Msa0058750:CDS |
| GGTACACTCAAGGAGTAGTT+TGG | 0.375382 | 1_2:-15325385 | Msa0058750:CDS |
| GTGGAAATTGGACTGATCAT+TGG | 0.389374 | 1_2:-15325175 | Msa0058750:CDS |
| TCAATTGGTCAATCCAATAT+AGG | 0.391166 | 1_2:+15325855 | None:intergenic |
| AAGAAGCTGCCAATTTATAA+AGG | 0.391641 | 1_2:+15326433 | None:intergenic |
| GCCTTGGCCCAACCTTAGTT+GGG | 0.393079 | 1_2:-15325286 | Msa0058750:CDS |
| ATCAGGCTGAGTGGCCTCTC+TGG | 0.400862 | 1_2:+15326324 | None:intergenic |
| TCATTATCTCTCTGGTGGAT+TGG | 0.401572 | 1_2:-15325804 | Msa0058750:intron |
| GTGACTTTGGGCCTCCTTGT+CGG | 0.411926 | 1_2:-15325905 | Msa0058750:CDS |
| TTAGTCGTGAAAATTTGAAT+AGG | 0.411933 | 1_2:+15324911 | None:intergenic |
| CCTTAGTTGGGTTTGTGGTG+GGG | 0.413230 | 1_2:-15325274 | Msa0058750:CDS |
| GGCTAACATCCTTGCTGGTG+GGG | 0.419242 | 1_2:-15325252 | Msa0058750:CDS |
| AACCTTAGTTGGGTTTGTGG+TGG | 0.423963 | 1_2:-15325276 | Msa0058750:CDS |
| TGGAAATTGGACTGATCATT+GGG | 0.429797 | 1_2:-15325174 | Msa0058750:CDS |
| GCTAAGTGGAGATGCCTTAG+TGG | 0.435457 | 1_2:-15326017 | Msa0058750:CDS |
| GCAGGCCCAAAAGATCTTGC+AGG | 0.436765 | 1_2:+15325206 | None:intergenic |
| CCAAAGAAAGGAGCACTTGA+TGG | 0.454081 | 1_2:-15325308 | Msa0058750:CDS |
| AAAGGAGCACTTGATGGCCT+TGG | 0.457740 | 1_2:-15325302 | Msa0058750:CDS |
| GTTGGACCACTTATTGGTGG+TGG | 0.458421 | 1_2:-15325143 | Msa0058750:CDS |
| CTTCTTCATTATCTCTCTGG+TGG | 0.466813 | 1_2:-15325809 | Msa0058750:CDS |
| CATACACTTGCAAGTGGAGT+AGG | 0.467366 | 1_2:-15325407 | Msa0058750:CDS |
| GTTGGTTCTGCAATGACTGC+TGG | 0.491784 | 1_2:-15326244 | Msa0058750:intron |
| AAGTCACGGCGGGATTCAAA+TGG | 0.491922 | 1_2:+15325921 | None:intergenic |
| GTACACTCAAGGAGTAGTTT+GGG | 0.493061 | 1_2:-15325384 | Msa0058750:CDS |
| CAGCTACAGATGCTATCAAT+TGG | 0.495298 | 1_2:+15325840 | None:intergenic |
| TGGGTTGGACCACTTATTGG+TGG | 0.496312 | 1_2:-15325146 | Msa0058750:CDS |
| ACCACAAACCCAACTAAGGT+TGG | 0.497042 | 1_2:+15325278 | None:intergenic |
| GGCTATTGCACATGCTCTTG+TGG | 0.499860 | 1_2:-15325981 | Msa0058750:CDS |
| ATTAGAGCTTGAATGCAATC+AGG | 0.503619 | 1_2:+15326307 | None:intergenic |
| CCACAAACCCAACTAAGGTT+GGG | 0.515362 | 1_2:+15325279 | None:intergenic |
| CCCCACCACAAACCCAACTA+AGG | 0.515431 | 1_2:+15325274 | None:intergenic |
| TCCTTTCTTTGGATCAACCA+TGG | 0.517654 | 1_2:+15325319 | None:intergenic |
| GACAAGGAGGCCCAAAGTCA+CGG | 0.542123 | 1_2:+15325907 | None:intergenic |
| ATTTCAATAGATAAGCTAAG+TGG | 0.542575 | 1_2:-15326031 | Msa0058750:intron |
| GATCATTGGGTATATTGGGT+TGG | 0.543718 | 1_2:-15325161 | Msa0058750:CDS |
| ACCATGGTTGATCCAAAGAA+AGG | 0.549142 | 1_2:-15325320 | Msa0058750:CDS |
| GCAAGTCCACCACCAATAAG+TGG | 0.551655 | 1_2:+15325137 | None:intergenic |
| CAATTTCCACTAACCAAAGC+AGG | 0.552637 | 1_2:+15325188 | None:intergenic |
| AGGAGGCCCAAAGTCACGGC+GGG | 0.557990 | 1_2:+15325911 | None:intergenic |
| ACCAGCAAAGACAAAGAGAA+AGG | 0.561490 | 1_2:+15326267 | None:intergenic |
| ACCATGGCCAAAATTGCGTT+AGG | 0.563591 | 1_2:-15326352 | Msa0058750:CDS |
| CCACTTGCAAGTGTATGAGC+TGG | 0.565802 | 1_2:+15325413 | None:intergenic |
| CCAGCTCATACACTTGCAAG+TGG | 0.572996 | 1_2:-15325413 | Msa0058750:CDS |
| CTTTCTTCATCTACAACTAG+AGG | 0.584705 | 1_2:+15325071 | None:intergenic |
| CTAAGTGGAGATGCCTTAGT+GGG | 0.595922 | 1_2:-15326016 | Msa0058750:CDS |
| GGCGGGATTCAAATGGCCAC+CGG | 0.596177 | 1_2:+15325928 | None:intergenic |
| ACTTTGGGCCTCCTTGTCGG+AGG | 0.600598 | 1_2:-15325902 | Msa0058750:CDS |
| ATACACTTGCAAGTGGAGTA+GGG | 0.603588 | 1_2:-15325406 | Msa0058750:CDS |
| TCTTGCAGGGTTCATTGAAG+CGG | 0.607315 | 1_2:+15325220 | None:intergenic |
| GTTCACTGTGTATGCAACCA+TGG | 0.609878 | 1_2:-15325336 | Msa0058750:CDS |
| CAGGCCCAAAAGATCTTGCA+GGG | 0.619708 | 1_2:+15325207 | None:intergenic |
| ACCCAACTAAGGTTGGGCCA+AGG | 0.626848 | 1_2:+15325285 | None:intergenic |
| TATTGCACATGCTCTTGTGG+TGG | 0.628052 | 1_2:-15325978 | Msa0058750:CDS |
| TCCGCCGCTCATATTTCCGG+TGG | 0.641948 | 1_2:-15325944 | Msa0058750:CDS |
| TTGAATGCAATCAGGCTGAG+TGG | 0.647396 | 1_2:+15326315 | None:intergenic |
| ACATTGCAAATCAGAAACCA+TGG | 0.654147 | 1_2:-15326368 | Msa0058750:exon |
| AGCAAAGACAAAGAGAAAGG+TGG | 0.654285 | 1_2:+15326270 | None:intergenic |
| TAGTTATGTGACCTCCGACA+AGG | 0.657530 | 1_2:+15325891 | None:intergenic |
| AGTGGAGTAGGGTACACTCA+AGG | 0.668556 | 1_2:-15325395 | Msa0058750:CDS |
| GCCACCGGAAATATGAGCGG+CGG | 0.678011 | 1_2:+15325943 | None:intergenic |
| TGCGTTAGGAACAACCAGAG+AGG | 0.706593 | 1_2:-15326338 | Msa0058750:CDS |
| ATGGCCACCGGAAATATGAG+CGG | 0.716960 | 1_2:+15325940 | None:intergenic |
| TTATGTGACCTCCGACAAGG+AGG | 0.729011 | 1_2:+15325894 | None:intergenic |
| AAGGAGGCCCAAAGTCACGG+CGG | 0.732640 | 1_2:+15325910 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTCAATTTTATTGTA+TGG | + | chr1_2:15325837-15325856 | None:intergenic | 10.0% |
| !!! | ATATATTTTTATTTATCTAC+CGG | + | chr1_2:15326443-15326462 | None:intergenic | 10.0% |
| !!! | TATTTTTCAATTTTATTGTA+TGG | + | chr1_2:15325837-15325856 | None:intergenic | 10.0% |
| !!! | ATATATTTTTATTTATCTAC+CGG | + | chr1_2:15326443-15326462 | None:intergenic | 10.0% |
| !!! | TAAAAATTACCACTTTTTTT+AGG | - | chr1_2:15325646-15325665 | Msa0058750:intron | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | - | chr1_2:15325681-15325700 | Msa0058750:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | - | chr1_2:15325682-15325701 | Msa0058750:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | + | chr1_2:15325745-15325764 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | - | chr1_2:15325743-15325762 | Msa0058750:intron | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | - | chr1_2:15325868-15325887 | Msa0058750:CDS | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | + | chr1_2:15326442-15326461 | None:intergenic | 15.0% |
| !!! | TAAAAATTACCACTTTTTTT+AGG | - | chr1_2:15325646-15325665 | Msa0058750:intron | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | - | chr1_2:15325681-15325700 | Msa0058750:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | - | chr1_2:15325682-15325701 | Msa0058750:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | + | chr1_2:15325745-15325764 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | - | chr1_2:15325743-15325762 | Msa0058750:intron | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | - | chr1_2:15325868-15325887 | Msa0058750:CDS | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | + | chr1_2:15326442-15326461 | None:intergenic | 15.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | - | chr1_2:15324955-15324974 | Msa0058750:three_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAA+GGG | + | chr1_2:15325269-15325288 | None:intergenic | 20.0% |
| !! | ACATTTCAATTCAAATAACA+AGG | + | chr1_2:15325270-15325289 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | + | chr1_2:15325358-15325377 | None:intergenic | 20.0% |
| !! | TCAAATCTTCATATATTACT+TGG | - | chr1_2:15325623-15325642 | Msa0058750:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | - | chr1_2:15325746-15325765 | Msa0058750:intron | 20.0% |
| !!! | TCAATTTTATTGTATGGATA+AGG | + | chr1_2:15325831-15325850 | None:intergenic | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | - | chr1_2:15325867-15325886 | Msa0058750:CDS | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | + | chr1_2:15325907-15325926 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | - | chr1_2:15325905-15325924 | Msa0058750:CDS | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | - | chr1_2:15326347-15326366 | Msa0058750:CDS | 20.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | - | chr1_2:15324955-15324974 | Msa0058750:three_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAA+GGG | + | chr1_2:15325269-15325288 | None:intergenic | 20.0% |
| !! | ACATTTCAATTCAAATAACA+AGG | + | chr1_2:15325270-15325289 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | + | chr1_2:15325358-15325377 | None:intergenic | 20.0% |
| !! | TCAAATCTTCATATATTACT+TGG | - | chr1_2:15325623-15325642 | Msa0058750:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | - | chr1_2:15325746-15325765 | Msa0058750:intron | 20.0% |
| !!! | TCAATTTTATTGTATGGATA+AGG | + | chr1_2:15325831-15325850 | None:intergenic | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | - | chr1_2:15325867-15325886 | Msa0058750:CDS | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | + | chr1_2:15325907-15325926 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | - | chr1_2:15325905-15325924 | Msa0058750:CDS | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | - | chr1_2:15326347-15326366 | Msa0058750:CDS | 20.0% |
| !!! | ATTTTTCAGCTATTGAGTAT+AGG | - | chr1_2:15324992-15325011 | Msa0058750:three_prime_UTR | 25.0% |
| ! | ATAACAAGGGATGAAATTAA+TGG | + | chr1_2:15325256-15325275 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | - | chr1_2:15325317-15325336 | Msa0058750:CDS | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | - | chr1_2:15325366-15325385 | Msa0058750:CDS | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | + | chr1_2:15325658-15325677 | None:intergenic | 25.0% |
| !!! | GTTACAAATCATCATTTTTC+AGG | - | chr1_2:15325668-15325687 | Msa0058750:intron | 25.0% |
| ! | TGTAATAAGCGTAATATTTG+AGG | - | chr1_2:15325718-15325737 | Msa0058750:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | - | chr1_2:15325759-15325778 | Msa0058750:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | - | chr1_2:15326358-15326377 | Msa0058750:exon | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | - | chr1_2:15326359-15326378 | Msa0058750:exon | 25.0% |
| !!! | ATTTTTCAGCTATTGAGTAT+AGG | - | chr1_2:15324992-15325011 | Msa0058750:three_prime_UTR | 25.0% |
| ! | ATAACAAGGGATGAAATTAA+TGG | + | chr1_2:15325256-15325275 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | - | chr1_2:15325317-15325336 | Msa0058750:CDS | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | - | chr1_2:15325366-15325385 | Msa0058750:CDS | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | + | chr1_2:15325658-15325677 | None:intergenic | 25.0% |
| !!! | GTTACAAATCATCATTTTTC+AGG | - | chr1_2:15325668-15325687 | Msa0058750:intron | 25.0% |
| ! | TGTAATAAGCGTAATATTTG+AGG | - | chr1_2:15325718-15325737 | Msa0058750:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | - | chr1_2:15325759-15325778 | Msa0058750:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | - | chr1_2:15326358-15326377 | Msa0058750:exon | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | - | chr1_2:15326359-15326378 | Msa0058750:exon | 25.0% |
| AAGAAGCTGCCAATTTATAA+AGG | + | chr1_2:15324967-15324986 | None:intergenic | 30.0% | |
| TCAATTGGTCAATCCAATAT+AGG | + | chr1_2:15325545-15325564 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | - | chr1_2:15325585-15325604 | Msa0058750:intron | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | + | chr1_2:15326378-15326397 | None:intergenic | 30.0% |
| AAGAAGCTGCCAATTTATAA+AGG | + | chr1_2:15324967-15324986 | None:intergenic | 30.0% | |
| TCAATTGGTCAATCCAATAT+AGG | + | chr1_2:15325545-15325564 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | - | chr1_2:15325585-15325604 | Msa0058750:intron | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | + | chr1_2:15326378-15326397 | None:intergenic | 30.0% |
| ACATTGCAAATCAGAAACCA+TGG | - | chr1_2:15325029-15325048 | Msa0058750:three_prime_UTR | 35.0% | |
| ATTAGAGCTTGAATGCAATC+AGG | + | chr1_2:15325093-15325112 | None:intergenic | 35.0% | |
| ! | AGGGATGAAATTAATGGATG+AGG | + | chr1_2:15325250-15325269 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | + | chr1_2:15325397-15325416 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | - | chr1_2:15325395-15325414 | Msa0058750:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | - | chr1_2:15326223-15326242 | Msa0058750:intron | 35.0% | |
| GACTGATCATTGGGTATATT+GGG | - | chr1_2:15326232-15326251 | Msa0058750:intron | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | + | chr1_2:15326329-15326348 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | - | chr1_2:15326421-15326440 | Msa0058750:five_prime_UTR | 35.0% |
| ACATTGCAAATCAGAAACCA+TGG | - | chr1_2:15325029-15325048 | Msa0058750:three_prime_UTR | 35.0% | |
| ATTAGAGCTTGAATGCAATC+AGG | + | chr1_2:15325093-15325112 | None:intergenic | 35.0% | |
| ! | AGGGATGAAATTAATGGATG+AGG | + | chr1_2:15325250-15325269 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | + | chr1_2:15325397-15325416 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | - | chr1_2:15325395-15325414 | Msa0058750:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | - | chr1_2:15326223-15326242 | Msa0058750:intron | 35.0% | |
| GACTGATCATTGGGTATATT+GGG | - | chr1_2:15326232-15326251 | Msa0058750:intron | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | + | chr1_2:15326329-15326348 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | - | chr1_2:15326421-15326440 | Msa0058750:five_prime_UTR | 35.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | + | chr1_2:15325055-15325074 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | + | chr1_2:15325130-15325149 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | - | chr1_2:15325129-15325148 | Msa0058750:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | + | chr1_2:15325133-15325152 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | - | chr1_2:15325529-15325548 | Msa0058750:intron | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | + | chr1_2:15325560-15325579 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | - | chr1_2:15325588-15325607 | Msa0058750:intron | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | - | chr1_2:15325593-15325612 | Msa0058750:intron | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | - | chr1_2:15325991-15326010 | Msa0058750:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | - | chr1_2:15326013-15326032 | Msa0058750:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | - | chr1_2:15326077-15326096 | Msa0058750:intron | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | + | chr1_2:15326081-15326100 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | - | chr1_2:15326185-15326204 | Msa0058750:intron | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | - | chr1_2:15326186-15326205 | Msa0058750:intron | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | + | chr1_2:15326212-15326231 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | - | chr1_2:15326210-15326229 | Msa0058750:intron | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | - | chr1_2:15326222-15326241 | Msa0058750:intron | 40.0% | |
| GGACTGATCATTGGGTATAT+TGG | - | chr1_2:15326231-15326250 | Msa0058750:intron | 40.0% | |
| GATCATTGGGTATATTGGGT+TGG | - | chr1_2:15326236-15326255 | Msa0058750:intron | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | - | chr1_2:15326248-15326267 | Msa0058750:CDS | 40.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | + | chr1_2:15325055-15325074 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | + | chr1_2:15325130-15325149 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | - | chr1_2:15325129-15325148 | Msa0058750:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | + | chr1_2:15325133-15325152 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | - | chr1_2:15325529-15325548 | Msa0058750:intron | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | + | chr1_2:15325560-15325579 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | - | chr1_2:15325588-15325607 | Msa0058750:intron | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | - | chr1_2:15325593-15325612 | Msa0058750:intron | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | - | chr1_2:15325991-15326010 | Msa0058750:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | - | chr1_2:15326013-15326032 | Msa0058750:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | - | chr1_2:15326077-15326096 | Msa0058750:intron | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | + | chr1_2:15326081-15326100 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | - | chr1_2:15326185-15326204 | Msa0058750:intron | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | - | chr1_2:15326186-15326205 | Msa0058750:intron | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | + | chr1_2:15326212-15326231 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | - | chr1_2:15326210-15326229 | Msa0058750:intron | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | - | chr1_2:15326222-15326241 | Msa0058750:intron | 40.0% | |
| GGACTGATCATTGGGTATAT+TGG | - | chr1_2:15326231-15326250 | Msa0058750:intron | 40.0% | |
| GATCATTGGGTATATTGGGT+TGG | - | chr1_2:15326236-15326255 | Msa0058750:intron | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | - | chr1_2:15326248-15326267 | Msa0058750:CDS | 40.0% |
| ACCATGGCCAAAATTGCGTT+AGG | - | chr1_2:15325045-15325064 | Msa0058750:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | + | chr1_2:15325049-15325068 | None:intergenic | 45.0% |
| TTGAATGCAATCAGGCTGAG+TGG | + | chr1_2:15325085-15325104 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | - | chr1_2:15325135-15325154 | Msa0058750:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | - | chr1_2:15325338-15325357 | Msa0058750:CDS | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | - | chr1_2:15325381-15325400 | Msa0058750:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | - | chr1_2:15325419-15325438 | Msa0058750:CDS | 45.0% | |
| TAGTTATGTGACCTCCGACA+AGG | + | chr1_2:15325509-15325528 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | - | chr1_2:15325990-15326009 | Msa0058750:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | - | chr1_2:15326012-15326031 | Msa0058750:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | - | chr1_2:15326061-15326080 | Msa0058750:intron | 45.0% | |
| CCATCAAGTGCTCCTTTCTT+TGG | + | chr1_2:15326092-15326111 | None:intergenic | 45.0% | |
| !! | CCAAAGAAAGGAGCACTTGA+TGG | - | chr1_2:15326089-15326108 | Msa0058750:intron | 45.0% |
| CCACAAACCCAACTAAGGTT+GGG | + | chr1_2:15326121-15326140 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | + | chr1_2:15326122-15326141 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | - | chr1_2:15326121-15326140 | Msa0058750:intron | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | - | chr1_2:15326122-15326141 | Msa0058750:intron | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | + | chr1_2:15326180-15326199 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | - | chr1_2:15326196-15326215 | Msa0058750:intron | 45.0% |
| ACCATGGCCAAAATTGCGTT+AGG | - | chr1_2:15325045-15325064 | Msa0058750:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | + | chr1_2:15325049-15325068 | None:intergenic | 45.0% |
| TTGAATGCAATCAGGCTGAG+TGG | + | chr1_2:15325085-15325104 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | - | chr1_2:15325135-15325154 | Msa0058750:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | - | chr1_2:15325338-15325357 | Msa0058750:CDS | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | - | chr1_2:15325381-15325400 | Msa0058750:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | - | chr1_2:15325419-15325438 | Msa0058750:CDS | 45.0% | |
| TAGTTATGTGACCTCCGACA+AGG | + | chr1_2:15325509-15325528 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | - | chr1_2:15325990-15326009 | Msa0058750:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | - | chr1_2:15326012-15326031 | Msa0058750:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | - | chr1_2:15326061-15326080 | Msa0058750:intron | 45.0% | |
| CCATCAAGTGCTCCTTTCTT+TGG | + | chr1_2:15326092-15326111 | None:intergenic | 45.0% | |
| !! | CCAAAGAAAGGAGCACTTGA+TGG | - | chr1_2:15326089-15326108 | Msa0058750:intron | 45.0% |
| CCACAAACCCAACTAAGGTT+GGG | + | chr1_2:15326121-15326140 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | + | chr1_2:15326122-15326141 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | - | chr1_2:15326121-15326140 | Msa0058750:intron | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | - | chr1_2:15326122-15326141 | Msa0058750:intron | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | + | chr1_2:15326180-15326199 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | - | chr1_2:15326196-15326215 | Msa0058750:intron | 45.0% |
| !! | AAATTTATTATTATTTATGT+TGG | - | chr1_2:15325799-15325818 | Msa0058750:intron | 5.0% |
| !! | AAATTTATTATTATTTATGT+TGG | - | chr1_2:15325799-15325818 | Msa0058750:intron | 5.0% |
| TGCGTTAGGAACAACCAGAG+AGG | - | chr1_2:15325059-15325078 | Msa0058750:exon | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | - | chr1_2:15325153-15325172 | Msa0058750:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | - | chr1_2:15325380-15325399 | Msa0058750:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | - | chr1_2:15325416-15325435 | Msa0058750:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | - | chr1_2:15325450-15325469 | Msa0058750:intron | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | + | chr1_2:15325460-15325479 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | + | chr1_2:15325479-15325498 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | - | chr1_2:15325479-15325498 | Msa0058750:intron | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | - | chr1_2:15325480-15325499 | Msa0058750:intron | 50.0% | |
| TTATGTGACCTCCGACAAGG+AGG | + | chr1_2:15325506-15325525 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | + | chr1_2:15325987-15326006 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | - | chr1_2:15325984-15326003 | Msa0058750:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | - | chr1_2:15326002-15326021 | Msa0058750:CDS | 50.0% | |
| !! | AAAGGAGCACTTGATGGCCT+TGG | - | chr1_2:15326095-15326114 | Msa0058750:intron | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | - | chr1_2:15326118-15326137 | Msa0058750:intron | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | - | chr1_2:15326123-15326142 | Msa0058750:intron | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | - | chr1_2:15326124-15326143 | Msa0058750:intron | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | + | chr1_2:15326193-15326212 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | - | chr1_2:15326203-15326222 | Msa0058750:intron | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | - | chr1_2:15326251-15326270 | Msa0058750:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | - | chr1_2:15326254-15326273 | Msa0058750:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | + | chr1_2:15326263-15326282 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | - | chr1_2:15326263-15326282 | Msa0058750:CDS | 50.0% |
| TGCGTTAGGAACAACCAGAG+AGG | - | chr1_2:15325059-15325078 | Msa0058750:exon | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | - | chr1_2:15325153-15325172 | Msa0058750:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | - | chr1_2:15325380-15325399 | Msa0058750:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | - | chr1_2:15325416-15325435 | Msa0058750:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | - | chr1_2:15325450-15325469 | Msa0058750:intron | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | + | chr1_2:15325460-15325479 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | + | chr1_2:15325479-15325498 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | - | chr1_2:15325479-15325498 | Msa0058750:intron | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | - | chr1_2:15325480-15325499 | Msa0058750:intron | 50.0% | |
| TTATGTGACCTCCGACAAGG+AGG | + | chr1_2:15325506-15325525 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | + | chr1_2:15325987-15326006 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | - | chr1_2:15325984-15326003 | Msa0058750:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | - | chr1_2:15326002-15326021 | Msa0058750:CDS | 50.0% | |
| !! | AAAGGAGCACTTGATGGCCT+TGG | - | chr1_2:15326095-15326114 | Msa0058750:intron | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | - | chr1_2:15326118-15326137 | Msa0058750:intron | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | - | chr1_2:15326123-15326142 | Msa0058750:intron | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | - | chr1_2:15326124-15326143 | Msa0058750:intron | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | + | chr1_2:15326193-15326212 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | - | chr1_2:15326203-15326222 | Msa0058750:intron | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | - | chr1_2:15326251-15326270 | Msa0058750:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | - | chr1_2:15326254-15326273 | Msa0058750:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | + | chr1_2:15326263-15326282 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | - | chr1_2:15326263-15326282 | Msa0058750:CDS | 50.0% |
| GACAAGGAGGCCCAAAGTCA+CGG | + | chr1_2:15325493-15325512 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+CGG | - | chr1_2:15325492-15325511 | Msa0058750:intron | 55.0% | |
| GCCTTGGCCCAACCTTAGTT+GGG | - | chr1_2:15326111-15326130 | Msa0058750:intron | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | + | chr1_2:15326115-15326134 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | + | chr1_2:15326126-15326145 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | - | chr1_2:15326144-15326163 | Msa0058750:intron | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | - | chr1_2:15326145-15326164 | Msa0058750:intron | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | - | chr1_2:15326154-15326173 | Msa0058750:intron | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | + | chr1_2:15326194-15326213 | None:intergenic | 55.0% | |
| GACAAGGAGGCCCAAAGTCA+CGG | + | chr1_2:15325493-15325512 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+CGG | - | chr1_2:15325492-15325511 | Msa0058750:intron | 55.0% | |
| GCCTTGGCCCAACCTTAGTT+GGG | - | chr1_2:15326111-15326130 | Msa0058750:intron | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | + | chr1_2:15326115-15326134 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | + | chr1_2:15326126-15326145 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | - | chr1_2:15326144-15326163 | Msa0058750:intron | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | - | chr1_2:15326145-15326164 | Msa0058750:intron | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | - | chr1_2:15326154-15326173 | Msa0058750:intron | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | + | chr1_2:15326194-15326213 | None:intergenic | 55.0% | |
| ATCAGGCTGAGTGGCCTCTC+TGG | + | chr1_2:15325076-15325095 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | - | chr1_2:15325453-15325472 | Msa0058750:intron | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | + | chr1_2:15325457-15325476 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | + | chr1_2:15325472-15325491 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | + | chr1_2:15325490-15325509 | None:intergenic | 60.0% | |
| ACTTTGGGCCTCCTTGTCGG+AGG | - | chr1_2:15325495-15325514 | Msa0058750:intron | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | - | chr1_2:15326110-15326129 | Msa0058750:intron | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | - | chr1_2:15326140-15326159 | Msa0058750:intron | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | - | chr1_2:15326143-15326162 | Msa0058750:intron | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | + | chr1_2:15326157-15326176 | None:intergenic | 60.0% | |
| ATCAGGCTGAGTGGCCTCTC+TGG | + | chr1_2:15325076-15325095 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | - | chr1_2:15325453-15325472 | Msa0058750:intron | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | + | chr1_2:15325457-15325476 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | + | chr1_2:15325472-15325491 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | + | chr1_2:15325490-15325509 | None:intergenic | 60.0% | |
| ACTTTGGGCCTCCTTGTCGG+AGG | - | chr1_2:15325495-15325514 | Msa0058750:intron | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | - | chr1_2:15326110-15326129 | Msa0058750:intron | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | - | chr1_2:15326140-15326159 | Msa0058750:intron | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | - | chr1_2:15326143-15326162 | Msa0058750:intron | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | + | chr1_2:15326157-15326176 | None:intergenic | 60.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | + | chr1_2:15325489-15325508 | None:intergenic | 65.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | + | chr1_2:15325489-15325508 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 15324919 | 15326500 | 15324919 | ID=Msa0058750;Name=Msa0058750 |
| chr1_2 | mRNA | 15324919 | 15326500 | 15324919 | ID=Msa0058750-mRNA-1;Parent=Msa0058750;Name=Msa0058750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|1|1|3|145|247 |
| chr1_2 | exon | 15324919 | 15325441 | 15324919 | ID=Msa0058750-mRNA-1:exon:6198;Parent=Msa0058750-mRNA-1 |
| chr1_2 | exon | 15325805 | 15326043 | 15325805 | ID=Msa0058750-mRNA-1:exon:6197;Parent=Msa0058750-mRNA-1 |
| chr1_2 | exon | 15326245 | 15326500 | 15326245 | ID=Msa0058750-mRNA-1:exon:6196;Parent=Msa0058750-mRNA-1 |
| chr1_2 | five_prime_UTR | 15326372 | 15326500 | 15326372 | ID=Msa0058750-mRNA-1:five_prime_utr;Parent=Msa0058750-mRNA-1 |
| chr1_2 | CDS | 15326245 | 15326371 | 15326245 | ID=Msa0058750-mRNA-1:cds;Parent=Msa0058750-mRNA-1 |
| chr1_2 | CDS | 15325805 | 15326043 | 15325805 | ID=Msa0058750-mRNA-1:cds;Parent=Msa0058750-mRNA-1 |
| chr1_2 | CDS | 15325064 | 15325441 | 15325064 | ID=Msa0058750-mRNA-1:cds;Parent=Msa0058750-mRNA-1 |
| chr1_2 | three_prime_UTR | 15324919 | 15325063 | 15324919 | ID=Msa0058750-mRNA-1:three_prime_utr;Parent=Msa0058750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
