Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158280 | XP_003588369.2 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 7.06e-174 | 488 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158280 | sp|O82316|TIP41_ARATH | 78.776 | 245 | 52 | 0 | 1 | 245 | 1 | 245 | 8.26e-132 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158280 | G7IB33 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 3.37e-174 | 488 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008970 | Msa0158280 | 0.834758 | 2.490130e-56 | -8.615850e-47 |
| Msa0058750 | Msa0158280 | 0.859538 | 3.859963e-63 | -8.615850e-47 |
| Msa0103600 | Msa0158280 | 0.863869 | 1.829161e-64 | -8.615850e-47 |
| Msa0158280 | Msa1019220 | 0.812200 | 4.778717e-51 | -8.615850e-47 |
| Msa0158280 | Msa1019230 | 0.805914 | 1.060546e-49 | -8.615850e-47 |
| Msa0158280 | Msa1104130 | 0.808554 | 2.925841e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158280 | MtrunA17_Chr1g0146161 | 99.595 | 247 | 1 | 0 | 1 | 247 | 1 | 247 | 6.49e-178 | 488 |
| Msa0158280 | MtrunA17_Chr1g0146171 | 86.235 | 247 | 34 | 0 | 1 | 247 | 1 | 247 | 2.27e-156 | 434 |
| Msa0158280 | MtrunA17_Chr8g0340161 | 57.661 | 248 | 99 | 3 | 1 | 243 | 1 | 247 | 4.13e-91 | 269 |
| Msa0158280 | MtrunA17_Chr2g0331261 | 56.967 | 244 | 101 | 3 | 4 | 243 | 5 | 248 | 4.57e-89 | 263 |
| Msa0158280 | MtrunA17_Chr4g0030861 | 54.008 | 237 | 105 | 2 | 1 | 233 | 3 | 239 | 7.11e-81 | 243 |
| Msa0158280 | MtrunA17_Chr7g0264961 | 54.098 | 244 | 107 | 3 | 1 | 240 | 3 | 245 | 2.65e-79 | 239 |
| Msa0158280 | MtrunA17_Chr1g0212671 | 51.250 | 240 | 112 | 3 | 3 | 238 | 5 | 243 | 6.84e-79 | 238 |
| Msa0158280 | MtrunA17_Chr7g0222791 | 53.086 | 243 | 109 | 3 | 3 | 240 | 5 | 247 | 6.75e-78 | 235 |
| Msa0158280 | MtrunA17_Chr5g0399341 | 53.012 | 249 | 109 | 4 | 1 | 244 | 1 | 246 | 1.65e-77 | 234 |
| Msa0158280 | MtrunA17_Chr1g0188771 | 44.269 | 253 | 130 | 3 | 3 | 244 | 5 | 257 | 7.06e-70 | 215 |
| Msa0158280 | MtrunA17_Chr6g0478191 | 44.400 | 250 | 131 | 3 | 3 | 244 | 5 | 254 | 4.62e-67 | 207 |
| Msa0158280 | MtrunA17_Chr4g0020781 | 40.838 | 191 | 108 | 3 | 57 | 243 | 20 | 209 | 5.07e-41 | 140 |
| Msa0158280 | MtrunA17_Chr5g0426131 | 34.874 | 238 | 142 | 7 | 14 | 247 | 32 | 260 | 1.54e-33 | 122 |
| Msa0158280 | MtrunA17_Chr1g0199731 | 35.600 | 250 | 129 | 9 | 10 | 235 | 30 | 271 | 3.20e-31 | 116 |
| Msa0158280 | MtrunA17_Chr2g0284611 | 36.052 | 233 | 140 | 6 | 18 | 247 | 37 | 263 | 8.57e-31 | 115 |
| Msa0158280 | MtrunA17_Chr7g0264111 | 33.878 | 245 | 141 | 7 | 9 | 234 | 29 | 271 | 1.83e-30 | 114 |
| Msa0158280 | MtrunA17_Chr2g0326621 | 34.008 | 247 | 135 | 9 | 11 | 234 | 32 | 273 | 4.66e-30 | 113 |
| Msa0158280 | MtrunA17_Chr4g0001221 | 37.073 | 205 | 109 | 7 | 24 | 220 | 80 | 272 | 9.47e-30 | 113 |
| Msa0158280 | MtrunA17_Chr3g0145671 | 34.335 | 233 | 130 | 8 | 19 | 234 | 37 | 263 | 3.19e-29 | 111 |
| Msa0158280 | MtrunA17_Chr2g0333771 | 37.073 | 205 | 109 | 7 | 24 | 220 | 85 | 277 | 3.72e-29 | 111 |
| Msa0158280 | MtrunA17_Chr1g0201331 | 35.841 | 226 | 126 | 7 | 19 | 237 | 74 | 287 | 2.31e-28 | 109 |
| Msa0158280 | MtrunA17_Chr4g0006001 | 35.088 | 228 | 126 | 7 | 19 | 229 | 56 | 278 | 4.80e-28 | 108 |
| Msa0158280 | MtrunA17_Chr5g0435051 | 36.522 | 230 | 137 | 7 | 18 | 245 | 39 | 261 | 6.12e-28 | 107 |
| Msa0158280 | MtrunA17_Chr5g0397391 | 34.199 | 231 | 125 | 7 | 19 | 229 | 52 | 275 | 8.91e-28 | 107 |
| Msa0158280 | MtrunA17_Chr2g0284591 | 34.335 | 233 | 144 | 6 | 18 | 247 | 35 | 261 | 2.24e-27 | 105 |
| Msa0158280 | MtrunA17_Chr4g0029071 | 33.992 | 253 | 128 | 12 | 10 | 234 | 30 | 271 | 2.76e-27 | 106 |
| Msa0158280 | MtrunA17_Chr3g0079421 | 37.327 | 217 | 127 | 7 | 18 | 232 | 25 | 234 | 1.48e-26 | 103 |
| Msa0158280 | MtrunA17_Chr8g0386961 | 32.900 | 231 | 128 | 7 | 19 | 229 | 52 | 275 | 3.24e-26 | 103 |
| Msa0158280 | MtrunA17_Chr5g0436701 | 35.135 | 222 | 125 | 7 | 19 | 224 | 55 | 273 | 2.13e-25 | 101 |
| Msa0158280 | MtrunA17_Chr2g0284631 | 33.621 | 232 | 138 | 9 | 18 | 244 | 90 | 310 | 3.34e-25 | 101 |
| Msa0158280 | MtrunA17_Chr3g0113211 | 32.895 | 228 | 138 | 6 | 11 | 224 | 47 | 273 | 3.38e-25 | 100 |
| Msa0158280 | MtrunA17_Chr7g0217331 | 34.906 | 212 | 130 | 5 | 19 | 228 | 37 | 242 | 1.89e-23 | 95.9 |
| Msa0158280 | MtrunA17_Chr8g0379901 | 33.023 | 215 | 135 | 6 | 18 | 229 | 38 | 246 | 2.75e-23 | 95.5 |
| Msa0158280 | MtrunA17_Chr8g0379911 | 32.558 | 215 | 136 | 6 | 18 | 229 | 37 | 245 | 7.50e-23 | 94.0 |
| Msa0158280 | MtrunA17_Chr2g0284581 | 31.696 | 224 | 137 | 7 | 7 | 220 | 19 | 236 | 1.08e-21 | 90.9 |
| Msa0158280 | MtrunA17_Chr4g0044201 | 31.481 | 216 | 126 | 6 | 18 | 229 | 34 | 231 | 4.88e-20 | 86.3 |
| Msa0158280 | MtrunA17_Chr2g0284601 | 34.574 | 188 | 116 | 5 | 36 | 220 | 5 | 188 | 1.37e-18 | 81.6 |
| Msa0158280 | MtrunA17_Chr1g0184541 | 30.769 | 221 | 144 | 6 | 19 | 237 | 62 | 275 | 1.99e-18 | 82.4 |
| Msa0158280 | MtrunA17_Chr4g0038591 | 27.481 | 262 | 157 | 8 | 10 | 247 | 42 | 294 | 4.28e-17 | 79.3 |
| Msa0158280 | MtrunA17_Chr4g0038611 | 32.178 | 202 | 108 | 7 | 67 | 245 | 35 | 230 | 5.47e-16 | 75.1 |
| Msa0158280 | MtrunA17_Chr4g0001111 | 35.172 | 145 | 78 | 5 | 24 | 161 | 80 | 215 | 1.11e-15 | 73.9 |
| Msa0158280 | MtrunA17_Chr6g0467461 | 31.132 | 106 | 54 | 2 | 125 | 230 | 4 | 90 | 1.23e-11 | 60.1 |
| Msa0158280 | MtrunA17_Chr4g0001161 | 32.847 | 137 | 76 | 5 | 32 | 161 | 1 | 128 | 2.70e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0158280 | AT2G25810.1 | 78.776 | 245 | 52 | 0 | 1 | 245 | 1 | 245 | 8.39e-133 | 375 |
| Msa0158280 | AT3G16240.1 | 56.098 | 246 | 101 | 4 | 1 | 240 | 1 | 245 | 6.37e-90 | 266 |
| Msa0158280 | AT2G36830.1 | 55.328 | 244 | 105 | 2 | 1 | 240 | 3 | 246 | 1.74e-89 | 265 |
| Msa0158280 | AT3G26520.1 | 55.128 | 234 | 101 | 2 | 7 | 236 | 10 | 243 | 2.66e-84 | 252 |
| Msa0158280 | AT5G47450.1 | 53.975 | 239 | 106 | 2 | 1 | 235 | 1 | 239 | 6.95e-83 | 248 |
| Msa0158280 | AT4G01470.1 | 51.417 | 247 | 115 | 3 | 3 | 244 | 5 | 251 | 2.30e-80 | 242 |
| Msa0158280 | AT4G17340.1 | 54.583 | 240 | 103 | 2 | 1 | 235 | 1 | 239 | 6.60e-79 | 238 |
| Msa0158280 | AT1G73190.1 | 48.638 | 257 | 114 | 3 | 6 | 244 | 11 | 267 | 7.07e-74 | 226 |
| Msa0158280 | AT1G17810.1 | 49.383 | 243 | 114 | 2 | 6 | 239 | 11 | 253 | 2.84e-70 | 217 |
| Msa0158280 | AT3G47440.1 | 42.009 | 219 | 122 | 3 | 16 | 230 | 20 | 237 | 1.07e-49 | 164 |
| Msa0158280 | AT2G37170.1 | 33.745 | 243 | 131 | 8 | 11 | 229 | 29 | 265 | 6.94e-31 | 115 |
| Msa0158280 | AT5G60660.1 | 34.746 | 236 | 132 | 8 | 19 | 235 | 39 | 271 | 7.53e-31 | 116 |
| Msa0158280 | AT2G37170.2 | 33.745 | 243 | 131 | 8 | 11 | 229 | 72 | 308 | 7.64e-31 | 117 |
| Msa0158280 | AT4G35100.1 | 35.776 | 232 | 128 | 9 | 19 | 234 | 38 | 264 | 8.04e-31 | 115 |
| Msa0158280 | AT4G35100.2 | 35.776 | 232 | 128 | 9 | 19 | 234 | 38 | 264 | 8.04e-31 | 115 |
| Msa0158280 | AT2G37180.1 | 34.440 | 241 | 134 | 8 | 10 | 229 | 28 | 265 | 1.06e-30 | 115 |
| Msa0158280 | AT3G54820.1 | 33.913 | 230 | 132 | 6 | 19 | 229 | 38 | 266 | 5.98e-30 | 113 |
| Msa0158280 | AT3G53420.1 | 34.348 | 230 | 131 | 7 | 19 | 229 | 39 | 267 | 2.44e-29 | 112 |
| Msa0158280 | AT3G53420.2 | 34.348 | 230 | 131 | 7 | 19 | 229 | 39 | 267 | 2.44e-29 | 112 |
| Msa0158280 | AT1G80760.1 | 36.364 | 209 | 115 | 6 | 19 | 220 | 80 | 277 | 2.89e-29 | 112 |
| Msa0158280 | AT2G39010.1 | 33.473 | 239 | 139 | 7 | 10 | 229 | 29 | 266 | 4.42e-29 | 111 |
| Msa0158280 | AT2G16850.1 | 34.483 | 232 | 131 | 9 | 19 | 234 | 36 | 262 | 8.36e-29 | 110 |
| Msa0158280 | AT4G00430.1 | 35.683 | 227 | 126 | 8 | 19 | 229 | 53 | 275 | 7.15e-28 | 108 |
| Msa0158280 | AT4G19030.1 | 36.199 | 221 | 127 | 7 | 18 | 229 | 54 | 269 | 1.62e-27 | 107 |
| Msa0158280 | AT4G10380.1 | 33.913 | 230 | 132 | 7 | 14 | 234 | 71 | 289 | 7.60e-27 | 105 |
| Msa0158280 | AT1G01620.1 | 34.802 | 227 | 128 | 8 | 19 | 229 | 52 | 274 | 7.72e-27 | 105 |
| Msa0158280 | AT4G23400.1 | 34.375 | 224 | 133 | 6 | 19 | 229 | 53 | 275 | 1.47e-26 | 104 |
| Msa0158280 | AT2G45960.1 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 4.08e-26 | 103 |
| Msa0158280 | AT3G61430.2 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 4.53e-26 | 103 |
| Msa0158280 | AT3G61430.1 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 4.53e-26 | 103 |
| Msa0158280 | AT5G37820.1 | 37.004 | 227 | 123 | 9 | 19 | 237 | 43 | 257 | 7.06e-26 | 102 |
| Msa0158280 | AT5G37820.2 | 36.522 | 230 | 125 | 9 | 19 | 240 | 79 | 295 | 9.61e-26 | 103 |
| Msa0158280 | AT4G18910.1 | 36.036 | 222 | 126 | 7 | 18 | 229 | 51 | 266 | 1.16e-25 | 102 |
| Msa0158280 | AT1G31885.1 | 36.321 | 212 | 121 | 7 | 18 | 220 | 42 | 248 | 1.10e-24 | 100 |
| Msa0158280 | AT5G37810.1 | 35.371 | 229 | 126 | 8 | 12 | 229 | 33 | 250 | 1.24e-24 | 99.4 |
| Msa0158280 | AT1G52180.1 | 51.163 | 86 | 42 | 0 | 125 | 210 | 39 | 124 | 3.73e-23 | 91.3 |
| Msa0158280 | AT1G01620.2 | 34.066 | 182 | 102 | 6 | 62 | 229 | 25 | 202 | 2.07e-22 | 92.0 |
| Msa0158280 | AT1G31885.2 | 35.176 | 199 | 115 | 7 | 31 | 220 | 1 | 194 | 1.15e-19 | 85.9 |
| Msa0158280 | AT2G45960.2 | 33.649 | 211 | 114 | 8 | 19 | 210 | 52 | 255 | 7.44e-18 | 80.9 |
| Msa0158280 | AT3G06100.1 | 30.374 | 214 | 144 | 5 | 18 | 230 | 45 | 254 | 9.90e-18 | 80.5 |
| Msa0158280 | AT2G45960.3 | 33.649 | 211 | 114 | 8 | 19 | 210 | 52 | 255 | 1.18e-17 | 80.9 |
| Msa0158280 | AT2G34390.1 | 30.769 | 221 | 138 | 7 | 18 | 229 | 47 | 261 | 1.79e-17 | 80.1 |
| Msa0158280 | AT3G06100.2 | 31.250 | 208 | 138 | 5 | 24 | 230 | 3 | 206 | 2.77e-17 | 78.6 |
| Msa0158280 | AT2G34390.2 | 30.734 | 218 | 136 | 7 | 21 | 229 | 8 | 219 | 1.59e-16 | 76.6 |
| Msa0158280 | AT4G00430.2 | 35.484 | 155 | 87 | 6 | 19 | 164 | 53 | 203 | 6.63e-14 | 68.9 |
| Msa0158280 | AT2G39010.2 | 32.335 | 167 | 100 | 5 | 10 | 164 | 29 | 194 | 9.40e-14 | 68.9 |
| Msa0158280 | AT4G19030.3 | 34.483 | 174 | 100 | 7 | 18 | 182 | 54 | 222 | 1.87e-13 | 67.8 |
| Msa0158280 | AT4G19030.2 | 33.553 | 152 | 91 | 5 | 18 | 161 | 54 | 203 | 4.13e-12 | 64.3 |
| Msa0158280 | AT4G18910.2 | 34.831 | 178 | 100 | 7 | 18 | 185 | 51 | 222 | 6.18e-12 | 63.5 |
Find 86 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGCCTTTATAAAT+TGG | 0.183363 | 1_4:+27043722 | Msa0158280:five_prime_UTR |
| CCAGCAAGTGCTCCTTTCTT+TGG | 0.194627 | 1_4:-27045047 | None:intergenic |
| ACCTTTCTCTTTGTCTTTGC+TGG | 0.204008 | 1_4:+27043896 | Msa0158280:CDS |
| GGACTGATCATTGGGTTTAT+TGG | 0.222150 | 1_4:+27045189 | Msa0158280:CDS |
| ATGAACCCTGCAAGATCTTT+TGG | 0.224227 | 1_4:+27045143 | Msa0158280:CDS |
| CTGCTTTGGTTAGTGGAAAT+TGG | 0.234876 | 1_4:+27045168 | Msa0158280:CDS |
| GGTTGTTCCTAACGCAATTT+TGG | 0.235450 | 1_4:-27043819 | None:intergenic |
| TATTGGGTTGGACCACTTAT+TGG | 0.235959 | 1_4:+27045206 | Msa0158280:CDS |
| GGCCTTGGCCCAACCTTAGT+TGG | 0.243998 | 1_4:+27045068 | Msa0158280:CDS |
| CTCTTTGTCTTTGCTGGTGT+TGG | 0.290840 | 1_4:+27043902 | Msa0158280:CDS |
| TTGAATCCCGCCGTGACTTT+GGG | 0.304849 | 1_4:+27044438 | Msa0158280:CDS |
| TTTGAATCCCGCCGTGACTT+TGG | 0.311719 | 1_4:+27044437 | Msa0158280:CDS |
| GACTGATCATTGGGTTTATT+GGG | 0.313313 | 1_4:+27045190 | Msa0158280:CDS |
| CTTATTGGTGGTGGACTTGC+TGG | 0.315006 | 1_4:+27045221 | Msa0158280:CDS |
| TTTGGGCCTGCTTTGGTTAG+TGG | 0.316883 | 1_4:+27045161 | Msa0158280:CDS |
| CTTAGTTGGGTTTGTGGTGG+GGG | 0.319883 | 1_4:+27045082 | Msa0158280:CDS |
| ACCTTAGTTGGGTTTGTGGT+GGG | 0.325499 | 1_4:+27045080 | Msa0158280:CDS |
| ATCTCCGCCGCTCATATTTC+CGG | 0.326476 | 1_4:+27044408 | Msa0158280:CDS |
| GGGGCTAACATCCTTGCTGG+TGG | 0.334049 | 1_4:+27045101 | Msa0158280:CDS |
| TCGTTCGTTCGATCCTATAT+TGG | 0.337543 | 1_4:+27044487 | Msa0158280:CDS |
| TATCTTCTTCATTATCTCTC+TGG | 0.355133 | 1_4:+27044543 | Msa0158280:CDS |
| GCCTTGGCCCAACCTTAGTT+GGG | 0.359318 | 1_4:+27045069 | Msa0158280:CDS |
| GGGCTAACATCCTTGCTGGT+GGG | 0.361838 | 1_4:+27045102 | Msa0158280:CDS |
| CCCAACCTTAGTTGGGTTTG+TGG | 0.373101 | 1_4:+27045076 | Msa0158280:CDS |
| GGTACACTCAAGGAGTAGTT+TGG | 0.375382 | 1_4:+27044970 | Msa0158280:CDS |
| GTGGAAATTGGACTGATCAT+TGG | 0.389374 | 1_4:+27045180 | Msa0158280:CDS |
| TCAATTGGTCAATCCAATAT+AGG | 0.391166 | 1_4:-27044500 | None:intergenic |
| AAGAAGCTGCCAATTTATAA+AGG | 0.391641 | 1_4:-27043731 | None:intergenic |
| AAAGGAGCACTTGCTGGCCT+TGG | 0.398295 | 1_4:+27045053 | Msa0158280:CDS |
| TGGAAATTGGACTGATCATT+GGG | 0.400779 | 1_4:+27045181 | Msa0158280:CDS |
| ATCAGGCTGAGTGGCCTCTC+TGG | 0.400862 | 1_4:-27043840 | None:intergenic |
| TCATTATCTCTCTGGTGGAT+TGG | 0.401572 | 1_4:+27044551 | Msa0158280:CDS |
| CCAAAGAAAGGAGCACTTGC+TGG | 0.403446 | 1_4:+27045047 | Msa0158280:CDS |
| GTGACTTTGGGCCTCCTTGT+CGG | 0.411926 | 1_4:+27044450 | Msa0158280:CDS |
| TTAGTCGTGAAAATTTGAAT+AGG | 0.411933 | 1_4:-27045444 | None:intergenic |
| CCTTAGTTGGGTTTGTGGTG+GGG | 0.413230 | 1_4:+27045081 | Msa0158280:CDS |
| GGCTAACATCCTTGCTGGTG+GGG | 0.419242 | 1_4:+27045103 | Msa0158280:CDS |
| AACCTTAGTTGGGTTTGTGG+TGG | 0.423963 | 1_4:+27045079 | Msa0158280:CDS |
| GCTAAGTGGAGATGCCTTAG+TGG | 0.435457 | 1_4:+27044338 | Msa0158280:CDS |
| GCAGGCCCAAAAGATCTTGC+AGG | 0.436765 | 1_4:-27045149 | None:intergenic |
| GATCATTGGGTTTATTGGGT+TGG | 0.446033 | 1_4:+27045194 | Msa0158280:CDS |
| GTTGGACCACTTATTGGTGG+TGG | 0.458421 | 1_4:+27045212 | Msa0158280:CDS |
| CTTCTTCATTATCTCTCTGG+TGG | 0.466813 | 1_4:+27044546 | Msa0158280:CDS |
| CATACACTTGCAAGTGGAGT+AGG | 0.467366 | 1_4:+27044948 | Msa0158280:CDS |
| GTTGGTTCTGCAATGACTGC+TGG | 0.491784 | 1_4:+27043920 | Msa0158280:CDS |
| AAGTCACGGCGGGATTCAAA+TGG | 0.491922 | 1_4:-27044434 | None:intergenic |
| GTACACTCAAGGAGTAGTTT+GGG | 0.493061 | 1_4:+27044971 | Msa0158280:CDS |
| TGGGTTGGACCACTTATTGG+TGG | 0.496312 | 1_4:+27045209 | Msa0158280:CDS |
| ACCACAAACCCAACTAAGGT+TGG | 0.497042 | 1_4:-27045077 | None:intergenic |
| GGCTATTGCACATGCTCTTG+TGG | 0.499860 | 1_4:+27044374 | Msa0158280:CDS |
| CAGCTGCAGATGCTATCAAT+TGG | 0.500751 | 1_4:-27044515 | None:intergenic |
| ATTAGAGCTTGAATGCAATC+AGG | 0.503619 | 1_4:-27043857 | None:intergenic |
| CCACAAACCCAACTAAGGTT+GGG | 0.515362 | 1_4:-27045076 | None:intergenic |
| CCCCACCACAAACCCAACTA+AGG | 0.515431 | 1_4:-27045081 | None:intergenic |
| TCCTTTCTTTGGATCAACCA+TGG | 0.517654 | 1_4:-27045036 | None:intergenic |
| GACAAGGAGGCCCAAAGTCA+CGG | 0.542123 | 1_4:-27044448 | None:intergenic |
| ATTTCAATAGATAAGCTAAG+TGG | 0.542575 | 1_4:+27044324 | Msa0158280:intron |
| ACCATGGTTGATCCAAAGAA+AGG | 0.549142 | 1_4:+27045035 | Msa0158280:CDS |
| GCAAGTCCACCACCAATAAG+TGG | 0.551655 | 1_4:-27045218 | None:intergenic |
| CAATTTCCACTAACCAAAGC+AGG | 0.552637 | 1_4:-27045167 | None:intergenic |
| AGGAGGCCCAAAGTCACGGC+GGG | 0.557990 | 1_4:-27044444 | None:intergenic |
| ACCATGGCCAAAATTGCGTT+AGG | 0.559940 | 1_4:+27043812 | Msa0158280:exon |
| ACCAGCAAAGACAAAGAGAA+AGG | 0.561490 | 1_4:-27043897 | None:intergenic |
| CCACTTGCAAGTGTATGAGC+TGG | 0.565802 | 1_4:-27044942 | None:intergenic |
| CCAGCTCATACACTTGCAAG+TGG | 0.572996 | 1_4:+27044942 | Msa0158280:CDS |
| CTTTCTTCATCTACAACTAG+AGG | 0.584705 | 1_4:-27045284 | None:intergenic |
| CTAAGTGGAGATGCCTTAGT+GGG | 0.595922 | 1_4:+27044339 | Msa0158280:CDS |
| GGCGGGATTCAAATGGCCAC+CGG | 0.596177 | 1_4:-27044427 | None:intergenic |
| ACTTTGGGCCTCCTTGTCGG+AGG | 0.600598 | 1_4:+27044453 | Msa0158280:CDS |
| ATACACTTGCAAGTGGAGTA+GGG | 0.603588 | 1_4:+27044949 | Msa0158280:CDS |
| TCTTGCAGGGTTCATTGAAG+CGG | 0.607315 | 1_4:-27045135 | None:intergenic |
| GTTCACTGTGTATGCAACCA+TGG | 0.609878 | 1_4:+27045019 | Msa0158280:CDS |
| CAGGCCCAAAAGATCTTGCA+GGG | 0.619708 | 1_4:-27045148 | None:intergenic |
| ACCCAACTAAGGTTGGGCCA+AGG | 0.626848 | 1_4:-27045070 | None:intergenic |
| TATTGCACATGCTCTTGTGG+TGG | 0.628052 | 1_4:+27044377 | Msa0158280:CDS |
| TCCGCCGCTCATATTTCCGG+TGG | 0.641948 | 1_4:+27044411 | Msa0158280:CDS |
| TTGAATGCAATCAGGCTGAG+TGG | 0.647396 | 1_4:-27043849 | None:intergenic |
| AGCAAAGACAAAGAGAAAGG+TGG | 0.654285 | 1_4:-27043894 | None:intergenic |
| TAGTTATGTGACCTCCGACA+AGG | 0.657530 | 1_4:-27044464 | None:intergenic |
| AGTGGAGTAGGGTACACTCA+AGG | 0.668556 | 1_4:+27044960 | Msa0158280:CDS |
| ACATTGCAAATCATAAACCA+TGG | 0.673064 | 1_4:+27043796 | Msa0158280:exon |
| GCCACCGGAAATATGAGCGG+CGG | 0.678011 | 1_4:-27044412 | None:intergenic |
| TGCGTTAGGAACAACCAGAG+AGG | 0.706593 | 1_4:+27043826 | Msa0158280:CDS |
| ATGGCCACCGGAAATATGAG+CGG | 0.716960 | 1_4:-27044415 | None:intergenic |
| TTATGTGACCTCCGACAAGG+AGG | 0.729011 | 1_4:-27044461 | None:intergenic |
| AAGGAGGCCCAAAGTCACGG+CGG | 0.732640 | 1_4:-27044445 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATTTTTTAAAAA+AGG | + | chr1_4:27043692-27043711 | Msa0158280:five_prime_UTR | 0.0% |
| !!! | TTTATTTTATTTTTTAAAAA+AGG | + | chr1_4:27043692-27043711 | Msa0158280:five_prime_UTR | 0.0% |
| !!! | ATATATTTTTATTTATCTAC+CGG | - | chr1_4:27045401-27045420 | None:intergenic | 10.0% |
| !!! | ATATATTTTTATTTATCTAC+CGG | - | chr1_4:27045401-27045420 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTCAATTAACTAG+TGG | + | chr1_4:27043977-27043996 | Msa0158280:intron | 15.0% |
| !! | TCTTATAAATCAAATGTATT+TGG | + | chr1_4:27044237-27044256 | Msa0158280:intron | 15.0% |
| !! | ATCTATTGAAATAAATTTCA+TGG | - | chr1_4:27044316-27044335 | None:intergenic | 15.0% |
| !!! | TAAAAATTACCACTTTTTTT+AGG | + | chr1_4:27044604-27044623 | Msa0158280:intron | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | + | chr1_4:27044639-27044658 | Msa0158280:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | + | chr1_4:27044640-27044659 | Msa0158280:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_4:27044703-27044722 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_4:27044701-27044720 | Msa0158280:intron | 15.0% |
| !!! | TATTTTTCAATTTCATTGTA+TGG | - | chr1_4:27044795-27044814 | None:intergenic | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_4:27044826-27044845 | Msa0158280:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | - | chr1_4:27045400-27045419 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCAATTAACTAG+TGG | + | chr1_4:27043977-27043996 | Msa0158280:intron | 15.0% |
| !! | TCTTATAAATCAAATGTATT+TGG | + | chr1_4:27044237-27044256 | Msa0158280:intron | 15.0% |
| !! | ATCTATTGAAATAAATTTCA+TGG | - | chr1_4:27044316-27044335 | None:intergenic | 15.0% |
| !!! | TAAAAATTACCACTTTTTTT+AGG | + | chr1_4:27044604-27044623 | Msa0158280:intron | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | + | chr1_4:27044639-27044658 | Msa0158280:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | + | chr1_4:27044640-27044659 | Msa0158280:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_4:27044703-27044722 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_4:27044701-27044720 | Msa0158280:intron | 15.0% |
| !!! | TATTTTTCAATTTCATTGTA+TGG | - | chr1_4:27044795-27044814 | None:intergenic | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_4:27044826-27044845 | Msa0158280:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | - | chr1_4:27045400-27045419 | None:intergenic | 15.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_4:27043722-27043741 | Msa0158280:five_prime_UTR | 20.0% |
| !! | ACATTTCAATTCAAATAACA+TGG | - | chr1_4:27044129-27044148 | None:intergenic | 20.0% |
| !! | TCCTAATGAAATATAAGAAA+TGG | + | chr1_4:27044212-27044231 | Msa0158280:intron | 20.0% |
| !! | CCTAATGAAATATAAGAAAT+GGG | + | chr1_4:27044213-27044232 | Msa0158280:intron | 20.0% |
| !! | CTAATGAAATATAAGAAATG+GGG | + | chr1_4:27044214-27044233 | Msa0158280:intron | 20.0% |
| !!! | AGTCAGTTAAATTAATCTTT+TGG | + | chr1_4:27044265-27044284 | Msa0158280:intron | 20.0% |
| !!! | GATTTTTAACCTAAAAAAAG+TGG | - | chr1_4:27044616-27044635 | None:intergenic | 20.0% |
| !!! | GTTAAAAATCATCATTTTTC+AGG | + | chr1_4:27044626-27044645 | Msa0158280:intron | 20.0% |
| !! | TGTAATAAACGTAATATTTG+AGG | + | chr1_4:27044676-27044695 | Msa0158280:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_4:27044704-27044723 | Msa0158280:intron | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_4:27044825-27044844 | Msa0158280:intron | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | - | chr1_4:27044865-27044884 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | + | chr1_4:27044863-27044882 | Msa0158280:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_4:27045305-27045324 | Msa0158280:exon | 20.0% |
| !!! | AATTTTATGCAAAGTTAACA+AGG | - | chr1_4:27045336-27045355 | None:intergenic | 20.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_4:27043722-27043741 | Msa0158280:five_prime_UTR | 20.0% |
| !! | ACATTTCAATTCAAATAACA+TGG | - | chr1_4:27044129-27044148 | None:intergenic | 20.0% |
| !! | TCCTAATGAAATATAAGAAA+TGG | + | chr1_4:27044212-27044231 | Msa0158280:intron | 20.0% |
| !! | CCTAATGAAATATAAGAAAT+GGG | + | chr1_4:27044213-27044232 | Msa0158280:intron | 20.0% |
| !! | CTAATGAAATATAAGAAATG+GGG | + | chr1_4:27044214-27044233 | Msa0158280:intron | 20.0% |
| !!! | AGTCAGTTAAATTAATCTTT+TGG | + | chr1_4:27044265-27044284 | Msa0158280:intron | 20.0% |
| !!! | GATTTTTAACCTAAAAAAAG+TGG | - | chr1_4:27044616-27044635 | None:intergenic | 20.0% |
| !!! | GTTAAAAATCATCATTTTTC+AGG | + | chr1_4:27044626-27044645 | Msa0158280:intron | 20.0% |
| !! | TGTAATAAACGTAATATTTG+AGG | + | chr1_4:27044676-27044695 | Msa0158280:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_4:27044704-27044723 | Msa0158280:intron | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_4:27044825-27044844 | Msa0158280:intron | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | - | chr1_4:27044865-27044884 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | + | chr1_4:27044863-27044882 | Msa0158280:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_4:27045305-27045324 | Msa0158280:exon | 20.0% |
| !!! | AATTTTATGCAAAGTTAACA+AGG | - | chr1_4:27045336-27045355 | None:intergenic | 20.0% |
| ! | CCCATTTCTTATATTTCATT+AGG | - | chr1_4:27044216-27044235 | None:intergenic | 25.0% |
| !!! | TTAATCTTTTGGAGAAAGTA+TGG | + | chr1_4:27044276-27044295 | Msa0158280:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_4:27044324-27044343 | Msa0158280:intron | 25.0% |
| ! | TCAACTCTTCATATATTACT+TGG | + | chr1_4:27044581-27044600 | Msa0158280:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_4:27044717-27044736 | Msa0158280:intron | 25.0% |
| ! | TCAATTTCATTGTATGGATA+AGG | - | chr1_4:27044789-27044808 | None:intergenic | 25.0% |
| ! | CCCATTTCTTATATTTCATT+AGG | - | chr1_4:27044216-27044235 | None:intergenic | 25.0% |
| !!! | TTAATCTTTTGGAGAAAGTA+TGG | + | chr1_4:27044276-27044295 | Msa0158280:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_4:27044324-27044343 | Msa0158280:intron | 25.0% |
| ! | TCAACTCTTCATATATTACT+TGG | + | chr1_4:27044581-27044600 | Msa0158280:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_4:27044717-27044736 | Msa0158280:intron | 25.0% |
| ! | TCAATTTCATTGTATGGATA+AGG | - | chr1_4:27044789-27044808 | None:intergenic | 25.0% |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_4:27043734-27043753 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGT+AGG | + | chr1_4:27043759-27043778 | Msa0158280:five_prime_UTR | 30.0% |
| ACATTGCAAATCATAAACCA+TGG | + | chr1_4:27043796-27043815 | Msa0158280:exon | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1_4:27044011-27044030 | Msa0158280:intron | 30.0% |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_4:27044503-27044522 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_4:27044543-27044562 | Msa0158280:CDS | 30.0% | |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_4:27043734-27043753 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGT+AGG | + | chr1_4:27043759-27043778 | Msa0158280:five_prime_UTR | 30.0% |
| ACATTGCAAATCATAAACCA+TGG | + | chr1_4:27043796-27043815 | Msa0158280:exon | 30.0% | |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1_4:27044011-27044030 | Msa0158280:intron | 30.0% |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_4:27044503-27044522 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_4:27044543-27044562 | Msa0158280:CDS | 30.0% | |
| ATTAGAGCTTGAATGCAATC+AGG | - | chr1_4:27043860-27043879 | None:intergenic | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1_4:27043999-27044018 | Msa0158280:intron | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1_4:27044013-27044032 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1_4:27044010-27044029 | Msa0158280:intron | 35.0% |
| GACATGCATTGTTATATGCA+GGG | - | chr1_4:27044058-27044077 | None:intergenic | 35.0% | |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_4:27044355-27044374 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_4:27044353-27044372 | Msa0158280:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_4:27045181-27045200 | Msa0158280:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_4:27045190-27045209 | Msa0158280:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_4:27045287-27045306 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | + | chr1_4:27045379-27045398 | Msa0158280:three_prime_UTR | 35.0% |
| ATTAGAGCTTGAATGCAATC+AGG | - | chr1_4:27043860-27043879 | None:intergenic | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1_4:27043999-27044018 | Msa0158280:intron | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1_4:27044013-27044032 | None:intergenic | 35.0% | |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1_4:27044010-27044029 | Msa0158280:intron | 35.0% |
| GACATGCATTGTTATATGCA+GGG | - | chr1_4:27044058-27044077 | None:intergenic | 35.0% | |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_4:27044355-27044374 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_4:27044353-27044372 | Msa0158280:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_4:27045181-27045200 | Msa0158280:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_4:27045190-27045209 | Msa0158280:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_4:27045287-27045306 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | + | chr1_4:27045379-27045398 | Msa0158280:three_prime_UTR | 35.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | - | chr1_4:27043822-27043841 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_4:27043897-27043916 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_4:27043896-27043915 | Msa0158280:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_4:27043900-27043919 | None:intergenic | 40.0% | |
| TGCATTGTTATATGCAGGGT+CGG | - | chr1_4:27044054-27044073 | None:intergenic | 40.0% | |
| GGACATGCATTGTTATATGC+AGG | - | chr1_4:27044059-27044078 | None:intergenic | 40.0% | |
| TGAGCATAACTCAGTTGACA+GGG | - | chr1_4:27044080-27044099 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_4:27044487-27044506 | Msa0158280:CDS | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_4:27044546-27044565 | Msa0158280:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_4:27044551-27044570 | Msa0158280:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_4:27044949-27044968 | Msa0158280:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_4:27044971-27044990 | Msa0158280:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_4:27045035-27045054 | Msa0158280:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_4:27045039-27045058 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_4:27045143-27045162 | Msa0158280:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_4:27045144-27045163 | Msa0158280:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_4:27045170-27045189 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_4:27045168-27045187 | Msa0158280:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_4:27045180-27045199 | Msa0158280:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_4:27045189-27045208 | Msa0158280:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_4:27045194-27045213 | Msa0158280:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_4:27045206-27045225 | Msa0158280:CDS | 40.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | - | chr1_4:27043822-27043841 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_4:27043897-27043916 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_4:27043896-27043915 | Msa0158280:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_4:27043900-27043919 | None:intergenic | 40.0% | |
| TGCATTGTTATATGCAGGGT+CGG | - | chr1_4:27044054-27044073 | None:intergenic | 40.0% | |
| GGACATGCATTGTTATATGC+AGG | - | chr1_4:27044059-27044078 | None:intergenic | 40.0% | |
| TGAGCATAACTCAGTTGACA+GGG | - | chr1_4:27044080-27044099 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_4:27044487-27044506 | Msa0158280:CDS | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_4:27044546-27044565 | Msa0158280:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_4:27044551-27044570 | Msa0158280:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_4:27044949-27044968 | Msa0158280:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_4:27044971-27044990 | Msa0158280:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_4:27045035-27045054 | Msa0158280:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_4:27045039-27045058 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_4:27045143-27045162 | Msa0158280:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_4:27045144-27045163 | Msa0158280:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_4:27045170-27045189 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_4:27045168-27045187 | Msa0158280:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_4:27045180-27045199 | Msa0158280:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_4:27045189-27045208 | Msa0158280:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_4:27045194-27045213 | Msa0158280:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_4:27045206-27045225 | Msa0158280:CDS | 40.0% |
| ACCATGGCCAAAATTGCGTT+AGG | + | chr1_4:27043812-27043831 | Msa0158280:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | - | chr1_4:27043816-27043835 | None:intergenic | 45.0% |
| TTGAATGCAATCAGGCTGAG+TGG | - | chr1_4:27043852-27043871 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_4:27043902-27043921 | Msa0158280:CDS | 45.0% | |
| !! | GTGAATAAGTGGGTTGTCCA+GGG | + | chr1_4:27044021-27044040 | Msa0158280:intron | 45.0% |
| GCATTGTTATATGCAGGGTC+GGG | - | chr1_4:27044053-27044072 | None:intergenic | 45.0% | |
| GTGAGCATAACTCAGTTGAC+AGG | - | chr1_4:27044081-27044100 | None:intergenic | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_4:27044339-27044358 | Msa0158280:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_4:27044377-27044396 | Msa0158280:CDS | 45.0% | |
| TAGTTATGTGACCTCCGACA+AGG | - | chr1_4:27044467-27044486 | None:intergenic | 45.0% | |
| CAGCTGCAGATGCTATCAAT+TGG | - | chr1_4:27044518-27044537 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_4:27044948-27044967 | Msa0158280:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_4:27044970-27044989 | Msa0158280:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_4:27045019-27045038 | Msa0158280:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_4:27045079-27045098 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_4:27045080-27045099 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_4:27045079-27045098 | Msa0158280:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_4:27045080-27045099 | Msa0158280:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_4:27045138-27045157 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_4:27045154-27045173 | Msa0158280:CDS | 45.0% |
| ACCATGGCCAAAATTGCGTT+AGG | + | chr1_4:27043812-27043831 | Msa0158280:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | - | chr1_4:27043816-27043835 | None:intergenic | 45.0% |
| TTGAATGCAATCAGGCTGAG+TGG | - | chr1_4:27043852-27043871 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_4:27043902-27043921 | Msa0158280:CDS | 45.0% | |
| !! | GTGAATAAGTGGGTTGTCCA+GGG | + | chr1_4:27044021-27044040 | Msa0158280:intron | 45.0% |
| GCATTGTTATATGCAGGGTC+GGG | - | chr1_4:27044053-27044072 | None:intergenic | 45.0% | |
| GTGAGCATAACTCAGTTGAC+AGG | - | chr1_4:27044081-27044100 | None:intergenic | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_4:27044339-27044358 | Msa0158280:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_4:27044377-27044396 | Msa0158280:CDS | 45.0% | |
| TAGTTATGTGACCTCCGACA+AGG | - | chr1_4:27044467-27044486 | None:intergenic | 45.0% | |
| CAGCTGCAGATGCTATCAAT+TGG | - | chr1_4:27044518-27044537 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_4:27044948-27044967 | Msa0158280:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_4:27044970-27044989 | Msa0158280:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_4:27045019-27045038 | Msa0158280:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_4:27045079-27045098 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_4:27045080-27045099 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_4:27045079-27045098 | Msa0158280:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_4:27045080-27045099 | Msa0158280:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_4:27045138-27045157 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_4:27045154-27045173 | Msa0158280:CDS | 45.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_4:27044757-27044776 | Msa0158280:intron | 5.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_4:27044757-27044776 | Msa0158280:intron | 5.0% |
| TGCGTTAGGAACAACCAGAG+AGG | + | chr1_4:27043826-27043845 | Msa0158280:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | + | chr1_4:27043920-27043939 | Msa0158280:CDS | 50.0% |
| !! | GGTGAATAAGTGGGTTGTCC+AGG | + | chr1_4:27044020-27044039 | Msa0158280:intron | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_4:27044338-27044357 | Msa0158280:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_4:27044374-27044393 | Msa0158280:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_4:27044408-27044427 | Msa0158280:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_4:27044418-27044437 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_4:27044437-27044456 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_4:27044437-27044456 | Msa0158280:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_4:27044438-27044457 | Msa0158280:CDS | 50.0% | |
| TTATGTGACCTCCGACAAGG+AGG | - | chr1_4:27044464-27044483 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_4:27044945-27044964 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_4:27044942-27044961 | Msa0158280:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_4:27044960-27044979 | Msa0158280:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_4:27045050-27045069 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_4:27045047-27045066 | Msa0158280:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_4:27045076-27045095 | Msa0158280:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_4:27045081-27045100 | Msa0158280:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_4:27045082-27045101 | Msa0158280:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_4:27045151-27045170 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_4:27045161-27045180 | Msa0158280:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_4:27045209-27045228 | Msa0158280:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_4:27045212-27045231 | Msa0158280:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_4:27045221-27045240 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_4:27045221-27045240 | Msa0158280:CDS | 50.0% |
| TGCGTTAGGAACAACCAGAG+AGG | + | chr1_4:27043826-27043845 | Msa0158280:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | + | chr1_4:27043920-27043939 | Msa0158280:CDS | 50.0% |
| !! | GGTGAATAAGTGGGTTGTCC+AGG | + | chr1_4:27044020-27044039 | Msa0158280:intron | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_4:27044338-27044357 | Msa0158280:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_4:27044374-27044393 | Msa0158280:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_4:27044408-27044427 | Msa0158280:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_4:27044418-27044437 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_4:27044437-27044456 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_4:27044437-27044456 | Msa0158280:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_4:27044438-27044457 | Msa0158280:CDS | 50.0% | |
| TTATGTGACCTCCGACAAGG+AGG | - | chr1_4:27044464-27044483 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_4:27044945-27044964 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_4:27044942-27044961 | Msa0158280:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_4:27044960-27044979 | Msa0158280:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_4:27045050-27045069 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_4:27045047-27045066 | Msa0158280:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_4:27045076-27045095 | Msa0158280:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_4:27045081-27045100 | Msa0158280:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_4:27045082-27045101 | Msa0158280:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_4:27045151-27045170 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_4:27045161-27045180 | Msa0158280:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_4:27045209-27045228 | Msa0158280:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_4:27045212-27045231 | Msa0158280:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_4:27045221-27045240 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_4:27045221-27045240 | Msa0158280:CDS | 50.0% |
| GACAAGGAGGCCCAAAGTCA+CGG | - | chr1_4:27044451-27044470 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+CGG | + | chr1_4:27044450-27044469 | Msa0158280:CDS | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_4:27045053-27045072 | Msa0158280:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_4:27045069-27045088 | Msa0158280:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_4:27045073-27045092 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_4:27045084-27045103 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_4:27045102-27045121 | Msa0158280:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_4:27045103-27045122 | Msa0158280:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_4:27045112-27045131 | Msa0158280:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_4:27045152-27045171 | None:intergenic | 55.0% | |
| GACAAGGAGGCCCAAAGTCA+CGG | - | chr1_4:27044451-27044470 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+CGG | + | chr1_4:27044450-27044469 | Msa0158280:CDS | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_4:27045053-27045072 | Msa0158280:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_4:27045069-27045088 | Msa0158280:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_4:27045073-27045092 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_4:27045084-27045103 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_4:27045102-27045121 | Msa0158280:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_4:27045103-27045122 | Msa0158280:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_4:27045112-27045131 | Msa0158280:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_4:27045152-27045171 | None:intergenic | 55.0% | |
| ATCAGGCTGAGTGGCCTCTC+TGG | - | chr1_4:27043843-27043862 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_4:27044411-27044430 | Msa0158280:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_4:27044415-27044434 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_4:27044430-27044449 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_4:27044448-27044467 | None:intergenic | 60.0% | |
| ACTTTGGGCCTCCTTGTCGG+AGG | + | chr1_4:27044453-27044472 | Msa0158280:CDS | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_4:27045068-27045087 | Msa0158280:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_4:27045098-27045117 | Msa0158280:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_4:27045101-27045120 | Msa0158280:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_4:27045115-27045134 | None:intergenic | 60.0% | |
| ATCAGGCTGAGTGGCCTCTC+TGG | - | chr1_4:27043843-27043862 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_4:27044411-27044430 | Msa0158280:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_4:27044415-27044434 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_4:27044430-27044449 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_4:27044448-27044467 | None:intergenic | 60.0% | |
| ACTTTGGGCCTCCTTGTCGG+AGG | + | chr1_4:27044453-27044472 | Msa0158280:CDS | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_4:27045068-27045087 | Msa0158280:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_4:27045098-27045117 | Msa0158280:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_4:27045101-27045120 | Msa0158280:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_4:27045115-27045134 | None:intergenic | 60.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_4:27044447-27044466 | None:intergenic | 65.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_4:27044447-27044466 | None:intergenic | 65.0% | |
| GCAGGGTCGGGTTCGAACCC+TGG | - | chr1_4:27044041-27044060 | None:intergenic | 70.0% | |
| GCAGGGTCGGGTTCGAACCC+TGG | - | chr1_4:27044041-27044060 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 27043686 | 27045458 | 27043686 | ID=Msa0158280;Name=Msa0158280 |
| chr1_4 | mRNA | 27043686 | 27045458 | 27043686 | ID=Msa0158280-mRNA-1;Parent=Msa0158280;Name=Msa0158280-mRNA-1;_AED=0.03;_eAED=0.03;_QI=129|1|1|1|1|1|3|145|247 |
| chr1_4 | exon | 27043686 | 27043941 | 27043686 | ID=Msa0158280-mRNA-1:exon:8920;Parent=Msa0158280-mRNA-1 |
| chr1_4 | exon | 27044334 | 27044572 | 27044334 | ID=Msa0158280-mRNA-1:exon:8921;Parent=Msa0158280-mRNA-1 |
| chr1_4 | exon | 27044936 | 27045458 | 27044936 | ID=Msa0158280-mRNA-1:exon:8922;Parent=Msa0158280-mRNA-1 |
| chr1_4 | five_prime_UTR | 27043686 | 27043814 | 27043686 | ID=Msa0158280-mRNA-1:five_prime_utr;Parent=Msa0158280-mRNA-1 |
| chr1_4 | CDS | 27043815 | 27043941 | 27043815 | ID=Msa0158280-mRNA-1:cds;Parent=Msa0158280-mRNA-1 |
| chr1_4 | CDS | 27044334 | 27044572 | 27044334 | ID=Msa0158280-mRNA-1:cds;Parent=Msa0158280-mRNA-1 |
| chr1_4 | CDS | 27044936 | 27045313 | 27044936 | ID=Msa0158280-mRNA-1:cds;Parent=Msa0158280-mRNA-1 |
| chr1_4 | three_prime_UTR | 27045314 | 27045458 | 27045314 | ID=Msa0158280-mRNA-1:three_prime_utr;Parent=Msa0158280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
