Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008970 | sp|O82316|TIP41_ARATH | 78.367 | 245 | 53 | 0 | 1 | 245 | 1 | 245 | 3.70e-131 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008970 | Msa0058750 | 0.858234 | 9.475697e-63 | -8.615850e-47 |
| Msa0008970 | Msa0103600 | 0.937448 | 3.407931e-98 | -8.615850e-47 |
| Msa0008970 | Msa0158280 | 0.834758 | 2.490130e-56 | -8.615850e-47 |
| Msa0008970 | Msa1019220 | 0.804410 | 2.188999e-49 | -8.615850e-47 |
| Msa0008970 | Msa1019230 | 0.815350 | 9.670653e-52 | -8.615850e-47 |
| Msa0008970 | Msa1104130 | 0.833535 | 5.043004e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008970 | MtrunA17_Chr1g0146161 | 98.785 | 247 | 3 | 0 | 1 | 247 | 1 | 247 | 4.48e-177 | 486 |
| Msa0008970 | MtrunA17_Chr1g0146171 | 85.425 | 247 | 36 | 0 | 1 | 247 | 1 | 247 | 2.04e-155 | 431 |
| Msa0008970 | MtrunA17_Chr8g0340161 | 57.258 | 248 | 100 | 3 | 1 | 243 | 1 | 247 | 1.54e-91 | 270 |
| Msa0008970 | MtrunA17_Chr2g0331261 | 57.377 | 244 | 100 | 3 | 4 | 243 | 5 | 248 | 6.47e-90 | 266 |
| Msa0008970 | MtrunA17_Chr4g0030861 | 54.430 | 237 | 104 | 2 | 1 | 233 | 3 | 239 | 1.08e-81 | 245 |
| Msa0008970 | MtrunA17_Chr7g0264961 | 54.098 | 244 | 107 | 3 | 1 | 240 | 3 | 245 | 1.06e-79 | 240 |
| Msa0008970 | MtrunA17_Chr1g0212671 | 51.667 | 240 | 111 | 3 | 3 | 238 | 5 | 243 | 1.87e-79 | 239 |
| Msa0008970 | MtrunA17_Chr7g0222791 | 53.498 | 243 | 108 | 3 | 3 | 240 | 5 | 247 | 1.81e-78 | 237 |
| Msa0008970 | MtrunA17_Chr5g0399341 | 53.012 | 249 | 109 | 4 | 1 | 244 | 1 | 246 | 4.83e-78 | 235 |
| Msa0008970 | MtrunA17_Chr1g0188771 | 44.664 | 253 | 129 | 3 | 3 | 244 | 5 | 257 | 2.65e-70 | 216 |
| Msa0008970 | MtrunA17_Chr6g0478191 | 44.000 | 250 | 132 | 3 | 3 | 244 | 5 | 254 | 1.74e-67 | 209 |
| Msa0008970 | MtrunA17_Chr4g0020781 | 41.361 | 191 | 107 | 3 | 57 | 243 | 20 | 209 | 1.03e-41 | 141 |
| Msa0008970 | MtrunA17_Chr5g0426131 | 34.874 | 238 | 142 | 7 | 14 | 247 | 32 | 260 | 2.42e-33 | 121 |
| Msa0008970 | MtrunA17_Chr1g0199731 | 35.200 | 250 | 130 | 9 | 10 | 235 | 30 | 271 | 1.93e-31 | 117 |
| Msa0008970 | MtrunA17_Chr2g0284611 | 36.481 | 233 | 139 | 6 | 18 | 247 | 37 | 263 | 5.22e-31 | 115 |
| Msa0008970 | MtrunA17_Chr7g0264111 | 33.469 | 245 | 142 | 7 | 9 | 234 | 29 | 271 | 8.06e-31 | 115 |
| Msa0008970 | MtrunA17_Chr4g0001221 | 37.073 | 205 | 109 | 7 | 24 | 220 | 80 | 272 | 2.02e-30 | 114 |
| Msa0008970 | MtrunA17_Chr2g0326621 | 33.603 | 247 | 136 | 9 | 11 | 234 | 32 | 273 | 2.26e-30 | 114 |
| Msa0008970 | MtrunA17_Chr2g0333771 | 37.073 | 205 | 109 | 7 | 24 | 220 | 85 | 277 | 6.72e-30 | 113 |
| Msa0008970 | MtrunA17_Chr3g0145671 | 33.906 | 233 | 131 | 8 | 19 | 234 | 37 | 263 | 1.22e-29 | 112 |
| Msa0008970 | MtrunA17_Chr1g0201331 | 35.841 | 226 | 126 | 7 | 19 | 237 | 74 | 287 | 3.88e-29 | 111 |
| Msa0008970 | MtrunA17_Chr4g0006001 | 34.649 | 228 | 127 | 7 | 19 | 229 | 56 | 278 | 1.91e-28 | 109 |
| Msa0008970 | MtrunA17_Chr5g0397391 | 33.766 | 231 | 126 | 7 | 19 | 229 | 52 | 275 | 3.20e-28 | 108 |
| Msa0008970 | MtrunA17_Chr5g0435051 | 36.087 | 230 | 138 | 7 | 18 | 245 | 39 | 261 | 1.12e-27 | 106 |
| Msa0008970 | MtrunA17_Chr2g0284591 | 34.764 | 233 | 143 | 6 | 18 | 247 | 35 | 261 | 1.58e-27 | 106 |
| Msa0008970 | MtrunA17_Chr4g0029071 | 33.466 | 251 | 132 | 11 | 10 | 234 | 30 | 271 | 2.76e-27 | 106 |
| Msa0008970 | MtrunA17_Chr8g0386961 | 32.468 | 231 | 129 | 7 | 19 | 229 | 52 | 275 | 1.21e-26 | 104 |
| Msa0008970 | MtrunA17_Chr3g0079421 | 37.327 | 217 | 127 | 7 | 18 | 232 | 25 | 234 | 1.29e-26 | 103 |
| Msa0008970 | MtrunA17_Chr5g0436701 | 34.685 | 222 | 126 | 7 | 19 | 224 | 55 | 273 | 8.73e-26 | 102 |
| Msa0008970 | MtrunA17_Chr3g0113211 | 32.456 | 228 | 139 | 6 | 11 | 224 | 47 | 273 | 1.73e-25 | 101 |
| Msa0008970 | MtrunA17_Chr2g0284631 | 34.052 | 232 | 137 | 9 | 18 | 244 | 90 | 310 | 2.28e-25 | 102 |
| Msa0008970 | MtrunA17_Chr7g0217331 | 34.906 | 212 | 130 | 5 | 19 | 228 | 37 | 242 | 6.12e-24 | 97.1 |
| Msa0008970 | MtrunA17_Chr8g0379901 | 32.558 | 215 | 136 | 6 | 18 | 229 | 38 | 246 | 1.69e-23 | 95.9 |
| Msa0008970 | MtrunA17_Chr8g0379911 | 33.023 | 215 | 135 | 6 | 18 | 229 | 37 | 245 | 4.81e-23 | 94.4 |
| Msa0008970 | MtrunA17_Chr2g0284581 | 32.143 | 224 | 136 | 7 | 7 | 220 | 19 | 236 | 7.28e-22 | 91.3 |
| Msa0008970 | MtrunA17_Chr4g0044201 | 32.727 | 220 | 118 | 7 | 18 | 229 | 34 | 231 | 3.98e-20 | 86.7 |
| Msa0008970 | MtrunA17_Chr1g0184541 | 30.769 | 221 | 144 | 6 | 19 | 237 | 62 | 275 | 1.03e-18 | 83.2 |
| Msa0008970 | MtrunA17_Chr2g0284601 | 34.574 | 188 | 116 | 5 | 36 | 220 | 5 | 188 | 1.41e-18 | 81.6 |
| Msa0008970 | MtrunA17_Chr4g0038591 | 27.481 | 262 | 157 | 8 | 10 | 247 | 42 | 294 | 1.56e-17 | 80.5 |
| Msa0008970 | MtrunA17_Chr4g0001111 | 35.172 | 145 | 78 | 5 | 24 | 161 | 80 | 215 | 2.70e-16 | 75.5 |
| Msa0008970 | MtrunA17_Chr4g0038611 | 32.178 | 202 | 108 | 7 | 67 | 245 | 35 | 230 | 6.17e-16 | 75.1 |
| Msa0008970 | MtrunA17_Chr4g0001161 | 32.847 | 137 | 76 | 5 | 32 | 161 | 1 | 128 | 7.17e-12 | 61.6 |
| Msa0008970 | MtrunA17_Chr6g0467461 | 31.132 | 106 | 54 | 2 | 125 | 230 | 4 | 90 | 1.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008970 | AT2G25810.1 | 78.367 | 245 | 53 | 0 | 1 | 245 | 1 | 245 | 3.76e-132 | 373 |
| Msa0008970 | AT2G36830.1 | 55.738 | 244 | 104 | 2 | 1 | 240 | 3 | 246 | 5.23e-90 | 266 |
| Msa0008970 | AT3G16240.1 | 56.098 | 246 | 101 | 4 | 1 | 240 | 1 | 245 | 6.73e-90 | 266 |
| Msa0008970 | AT3G26520.1 | 55.556 | 234 | 100 | 2 | 7 | 236 | 10 | 243 | 7.11e-85 | 253 |
| Msa0008970 | AT5G47450.1 | 53.975 | 239 | 106 | 2 | 1 | 235 | 1 | 239 | 2.19e-83 | 249 |
| Msa0008970 | AT4G01470.1 | 51.822 | 247 | 114 | 3 | 3 | 244 | 5 | 251 | 5.39e-81 | 243 |
| Msa0008970 | AT4G17340.1 | 54.583 | 240 | 103 | 2 | 1 | 235 | 1 | 239 | 1.45e-79 | 240 |
| Msa0008970 | AT1G73190.1 | 48.638 | 257 | 114 | 3 | 6 | 244 | 11 | 267 | 2.16e-74 | 227 |
| Msa0008970 | AT1G17810.1 | 49.383 | 243 | 114 | 2 | 6 | 239 | 11 | 253 | 7.47e-71 | 218 |
| Msa0008970 | AT3G47440.1 | 42.922 | 219 | 120 | 3 | 16 | 230 | 20 | 237 | 1.44e-50 | 166 |
| Msa0008970 | AT4G35100.1 | 35.345 | 232 | 129 | 9 | 19 | 234 | 38 | 264 | 2.83e-31 | 117 |
| Msa0008970 | AT4G35100.2 | 35.345 | 232 | 129 | 9 | 19 | 234 | 38 | 264 | 2.83e-31 | 117 |
| Msa0008970 | AT5G60660.1 | 34.322 | 236 | 133 | 8 | 19 | 235 | 39 | 271 | 2.92e-31 | 117 |
| Msa0008970 | AT2G37170.1 | 33.333 | 243 | 132 | 8 | 11 | 229 | 29 | 265 | 4.06e-31 | 116 |
| Msa0008970 | AT2G37180.1 | 34.440 | 241 | 134 | 8 | 10 | 229 | 28 | 265 | 4.19e-31 | 116 |
| Msa0008970 | AT2G37170.2 | 33.333 | 243 | 132 | 8 | 11 | 229 | 72 | 308 | 5.59e-31 | 117 |
| Msa0008970 | AT3G54820.1 | 33.478 | 230 | 133 | 6 | 19 | 229 | 38 | 266 | 2.23e-30 | 114 |
| Msa0008970 | AT1G80760.1 | 36.842 | 209 | 114 | 6 | 19 | 220 | 80 | 277 | 5.05e-30 | 114 |
| Msa0008970 | AT3G53420.1 | 33.913 | 230 | 132 | 7 | 19 | 229 | 39 | 267 | 8.54e-30 | 113 |
| Msa0008970 | AT3G53420.2 | 33.913 | 230 | 132 | 7 | 19 | 229 | 39 | 267 | 8.54e-30 | 113 |
| Msa0008970 | AT2G16850.1 | 34.052 | 232 | 132 | 9 | 19 | 234 | 36 | 262 | 3.65e-29 | 111 |
| Msa0008970 | AT2G39010.1 | 33.054 | 239 | 140 | 7 | 10 | 229 | 29 | 266 | 8.63e-29 | 110 |
| Msa0008970 | AT4G00430.1 | 35.242 | 227 | 127 | 8 | 19 | 229 | 53 | 275 | 2.17e-28 | 109 |
| Msa0008970 | AT4G10380.1 | 34.081 | 223 | 129 | 6 | 19 | 234 | 78 | 289 | 1.44e-27 | 107 |
| Msa0008970 | AT1G01620.1 | 34.361 | 227 | 129 | 8 | 19 | 229 | 52 | 274 | 2.96e-27 | 106 |
| Msa0008970 | AT4G19030.1 | 35.294 | 221 | 129 | 7 | 18 | 229 | 54 | 269 | 5.30e-27 | 105 |
| Msa0008970 | AT4G23400.1 | 33.929 | 224 | 134 | 6 | 19 | 229 | 53 | 275 | 6.73e-27 | 105 |
| Msa0008970 | AT2G45960.1 | 35.556 | 225 | 119 | 8 | 19 | 224 | 52 | 269 | 1.72e-26 | 104 |
| Msa0008970 | AT3G61430.2 | 35.556 | 225 | 119 | 8 | 19 | 224 | 52 | 269 | 1.74e-26 | 104 |
| Msa0008970 | AT3G61430.1 | 35.556 | 225 | 119 | 8 | 19 | 224 | 52 | 269 | 1.74e-26 | 104 |
| Msa0008970 | AT5G37820.1 | 36.564 | 227 | 124 | 9 | 19 | 237 | 43 | 257 | 5.73e-26 | 102 |
| Msa0008970 | AT5G37820.2 | 36.087 | 230 | 126 | 9 | 19 | 240 | 79 | 295 | 8.85e-26 | 103 |
| Msa0008970 | AT4G18910.1 | 35.586 | 222 | 127 | 7 | 18 | 229 | 51 | 266 | 4.61e-25 | 100 |
| Msa0008970 | AT5G37810.1 | 34.934 | 229 | 127 | 8 | 12 | 229 | 33 | 250 | 1.32e-24 | 99.4 |
| Msa0008970 | AT1G31885.1 | 35.211 | 213 | 124 | 7 | 18 | 221 | 42 | 249 | 5.16e-24 | 98.6 |
| Msa0008970 | AT1G52180.1 | 51.163 | 86 | 42 | 0 | 125 | 210 | 39 | 124 | 3.28e-23 | 91.7 |
| Msa0008970 | AT1G01620.2 | 34.066 | 182 | 102 | 6 | 62 | 229 | 25 | 202 | 4.75e-23 | 93.6 |
| Msa0008970 | AT1G31885.2 | 34.673 | 199 | 116 | 7 | 31 | 220 | 1 | 194 | 3.48e-19 | 84.3 |
| Msa0008970 | AT2G45960.2 | 33.175 | 211 | 115 | 8 | 19 | 210 | 52 | 255 | 2.91e-18 | 82.0 |
| Msa0008970 | AT2G45960.3 | 33.175 | 211 | 115 | 8 | 19 | 210 | 52 | 255 | 4.74e-18 | 82.0 |
| Msa0008970 | AT3G06100.1 | 30.374 | 214 | 144 | 5 | 18 | 230 | 45 | 254 | 1.59e-17 | 80.1 |
| Msa0008970 | AT3G06100.2 | 31.250 | 208 | 138 | 5 | 24 | 230 | 3 | 206 | 2.89e-17 | 78.6 |
| Msa0008970 | AT2G34390.1 | 30.769 | 221 | 138 | 7 | 18 | 229 | 47 | 261 | 4.58e-17 | 79.0 |
| Msa0008970 | AT2G34390.2 | 30.734 | 218 | 136 | 7 | 21 | 229 | 8 | 219 | 3.95e-16 | 75.9 |
| Msa0008970 | AT4G00430.2 | 34.839 | 155 | 88 | 6 | 19 | 164 | 53 | 203 | 2.94e-14 | 70.1 |
| Msa0008970 | AT2G39010.2 | 31.737 | 167 | 101 | 5 | 10 | 164 | 29 | 194 | 1.54e-13 | 68.2 |
| Msa0008970 | AT4G19030.3 | 33.333 | 174 | 102 | 7 | 18 | 182 | 54 | 222 | 7.71e-13 | 66.2 |
| Msa0008970 | AT4G19030.2 | 32.237 | 152 | 93 | 5 | 18 | 161 | 54 | 203 | 2.01e-11 | 62.4 |
| Msa0008970 | AT4G18910.2 | 34.270 | 178 | 101 | 7 | 18 | 185 | 51 | 222 | 2.23e-11 | 62.0 |
Find 86 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGCCTTTATAAAT+TGG | 0.183363 | 1_1:+13052059 | Msa0008970:five_prime_UTR |
| CCAGCAAGTGCTCCTTTCTT+TGG | 0.194627 | 1_1:-13053199 | None:intergenic |
| ACCTTTCTCTTTGTCTTTGC+TGG | 0.204008 | 1_1:+13052234 | Msa0008970:CDS |
| GGACTGATCATTGGGTTTAT+TGG | 0.222150 | 1_1:+13053341 | Msa0008970:CDS |
| ATGAACCCTGCAAGATCTTT+TGG | 0.224227 | 1_1:+13053295 | Msa0008970:CDS |
| CTGCTTTGGTTAGTGGAAAT+TGG | 0.234876 | 1_1:+13053320 | Msa0008970:CDS |
| GGTTGTTCCTAACGCAATTT+TGG | 0.235450 | 1_1:-13052157 | None:intergenic |
| TATTGGGTTGGACCACTTAT+TGG | 0.235959 | 1_1:+13053358 | Msa0008970:CDS |
| GGCCTTGGCCCAACCTTAGT+TGG | 0.243998 | 1_1:+13053220 | Msa0008970:CDS |
| CTCTTTGTCTTTGCTGGTGT+TGG | 0.290840 | 1_1:+13052240 | Msa0008970:CDS |
| TTGAATCCCGCCGTGACTTT+GGG | 0.304849 | 1_1:+13052587 | Msa0008970:CDS |
| TTTGAATCCCGCCGTGACTT+TGG | 0.311719 | 1_1:+13052586 | Msa0008970:CDS |
| GACTGATCATTGGGTTTATT+GGG | 0.313313 | 1_1:+13053342 | Msa0008970:CDS |
| CTTATTGGTGGTGGACTTGC+TGG | 0.315006 | 1_1:+13053373 | Msa0008970:CDS |
| TTTGGGCCTGCTTTGGTTAG+TGG | 0.316883 | 1_1:+13053313 | Msa0008970:CDS |
| CTTAGTTGGGTTTGTGGTGG+GGG | 0.319883 | 1_1:+13053234 | Msa0008970:CDS |
| GTGACTTTGGGCCTCCTTGT+TGG | 0.325239 | 1_1:+13052599 | Msa0008970:CDS |
| ACCTTAGTTGGGTTTGTGGT+GGG | 0.325499 | 1_1:+13053232 | Msa0008970:CDS |
| ATCTCCGCCGCTCATATTTC+CGG | 0.326476 | 1_1:+13052557 | Msa0008970:CDS |
| GGGGCTAACATCCTTGCTGG+TGG | 0.334049 | 1_1:+13053253 | Msa0008970:CDS |
| TCGTTCGTTCGATCCTATAT+TGG | 0.337543 | 1_1:+13052636 | Msa0008970:CDS |
| TATCTTCTTCATTATCTCTC+TGG | 0.355133 | 1_1:+13052692 | Msa0008970:CDS |
| GCCTTGGCCCAACCTTAGTT+GGG | 0.359318 | 1_1:+13053221 | Msa0008970:CDS |
| GGGCTAACATCCTTGCTGGT+GGG | 0.361838 | 1_1:+13053254 | Msa0008970:CDS |
| CCCAACCTTAGTTGGGTTTG+TGG | 0.373101 | 1_1:+13053228 | Msa0008970:CDS |
| GGTACACTCAAGGAGTAGTT+TGG | 0.375382 | 1_1:+13053122 | Msa0008970:CDS |
| GTGGAAATTGGACTGATCAT+TGG | 0.389374 | 1_1:+13053332 | Msa0008970:CDS |
| TCAATTGGTCAATCCAATAT+AGG | 0.391166 | 1_1:-13052649 | None:intergenic |
| AAGAAGCTGCCAATTTATAA+AGG | 0.391641 | 1_1:-13052068 | None:intergenic |
| AAAGGAGCACTTGCTGGCCT+TGG | 0.398295 | 1_1:+13053205 | Msa0008970:CDS |
| TGGAAATTGGACTGATCATT+GGG | 0.400779 | 1_1:+13053333 | Msa0008970:CDS |
| TCATTATCTCTCTGGTGGAT+TGG | 0.401572 | 1_1:+13052700 | Msa0008970:CDS |
| CCAAAGAAAGGAGCACTTGC+TGG | 0.403446 | 1_1:+13053199 | Msa0008970:CDS |
| TTAGTCGTGAAAATTTGAAT+AGG | 0.411933 | 1_1:-13053596 | None:intergenic |
| CCTTAGTTGGGTTTGTGGTG+GGG | 0.413230 | 1_1:+13053233 | Msa0008970:CDS |
| GGCTAACATCCTTGCTGGTG+GGG | 0.419242 | 1_1:+13053255 | Msa0008970:CDS |
| AACCTTAGTTGGGTTTGTGG+TGG | 0.423963 | 1_1:+13053231 | Msa0008970:CDS |
| ATCAGGCTGAGTAGCCTCTC+TGG | 0.431188 | 1_1:-13052178 | None:intergenic |
| GCTAAGTGGAGATGCCTTAG+TGG | 0.435457 | 1_1:+13052487 | Msa0008970:CDS |
| GCAGGCCCAAAAGATCTTGC+AGG | 0.436765 | 1_1:-13053301 | None:intergenic |
| GATCATTGGGTTTATTGGGT+TGG | 0.446033 | 1_1:+13053346 | Msa0008970:CDS |
| GTTGGACCACTTATTGGTGG+TGG | 0.458421 | 1_1:+13053364 | Msa0008970:CDS |
| CTTCTTCATTATCTCTCTGG+TGG | 0.466813 | 1_1:+13052695 | Msa0008970:CDS |
| CATACACTTGCAAGTGGAGT+AGG | 0.467366 | 1_1:+13053100 | Msa0008970:CDS |
| ACTTTGGGCCTCCTTGTTGG+AGG | 0.475351 | 1_1:+13052602 | Msa0008970:CDS |
| AAGTCACGGCGGGATTCAAA+TGG | 0.491922 | 1_1:-13052583 | None:intergenic |
| GTACACTCAAGGAGTAGTTT+GGG | 0.493061 | 1_1:+13053123 | Msa0008970:CDS |
| CAGCTACAGATGCTATCAAT+TGG | 0.495298 | 1_1:-13052664 | None:intergenic |
| ACTAGAGCTTGAATGCAATC+AGG | 0.496075 | 1_1:-13052195 | None:intergenic |
| TGGGTTGGACCACTTATTGG+TGG | 0.496312 | 1_1:+13053361 | Msa0008970:CDS |
| ACCACAAACCCAACTAAGGT+TGG | 0.497042 | 1_1:-13053229 | None:intergenic |
| GGCTATTGCACATGCTCTTG+TGG | 0.499860 | 1_1:+13052523 | Msa0008970:CDS |
| CCACAAACCCAACTAAGGTT+GGG | 0.515362 | 1_1:-13053228 | None:intergenic |
| CCCCACCACAAACCCAACTA+AGG | 0.515431 | 1_1:-13053233 | None:intergenic |
| TCCTTTCTTTGGATCAACCA+TGG | 0.517654 | 1_1:-13053188 | None:intergenic |
| ATTTCAATAGATAAGCTAAG+TGG | 0.542575 | 1_1:+13052473 | Msa0008970:intron |
| AACAAGGAGGCCCAAAGTCA+CGG | 0.547124 | 1_1:-13052597 | None:intergenic |
| ACCATGGTTGATCCAAAGAA+AGG | 0.549142 | 1_1:+13053187 | Msa0008970:CDS |
| GCAAGTCCACCACCAATAAG+TGG | 0.551655 | 1_1:-13053370 | None:intergenic |
| CAATTTCCACTAACCAAAGC+AGG | 0.552637 | 1_1:-13053319 | None:intergenic |
| GTTGGTTCTGCAATGACTGC+AGG | 0.553968 | 1_1:+13052258 | Msa0008970:CDS |
| ACCAGCAAAGACAAAGAGAA+AGG | 0.561490 | 1_1:-13052235 | None:intergenic |
| ACCATGGCCAAAATTGCGTT+AGG | 0.563591 | 1_1:+13052150 | Msa0008970:exon |
| CCACTTGCAAGTGTATGAGC+TGG | 0.565802 | 1_1:-13053094 | None:intergenic |
| AGGAGGCCCAAAGTCACGGC+GGG | 0.567970 | 1_1:-13052593 | None:intergenic |
| CCAGCTCATACACTTGCAAG+TGG | 0.572996 | 1_1:+13053094 | Msa0008970:CDS |
| CTTTCTTCATCTACAACTAG+AGG | 0.584705 | 1_1:-13053436 | None:intergenic |
| CTAAGTGGAGATGCCTTAGT+GGG | 0.595922 | 1_1:+13052488 | Msa0008970:CDS |
| GGCGGGATTCAAATGGCCAC+CGG | 0.596177 | 1_1:-13052576 | None:intergenic |
| ATACACTTGCAAGTGGAGTA+GGG | 0.603588 | 1_1:+13053101 | Msa0008970:CDS |
| TCTTGCAGGGTTCATTGAAG+CGG | 0.607315 | 1_1:-13053287 | None:intergenic |
| GTTCACTGTGTATGCAACCA+TGG | 0.609878 | 1_1:+13053171 | Msa0008970:CDS |
| TAGTGATGTGGCCTCCAACA+AGG | 0.618519 | 1_1:-13052613 | None:intergenic |
| CAGGCCCAAAAGATCTTGCA+GGG | 0.619708 | 1_1:-13053300 | None:intergenic |
| ACCCAACTAAGGTTGGGCCA+AGG | 0.626848 | 1_1:-13053222 | None:intergenic |
| TATTGCACATGCTCTTGTGG+TGG | 0.628052 | 1_1:+13052526 | Msa0008970:CDS |
| TCCGCCGCTCATATTTCCGG+TGG | 0.641948 | 1_1:+13052560 | Msa0008970:CDS |
| ACATTGCAAATCAGAAACCA+TGG | 0.654147 | 1_1:+13052134 | Msa0008970:exon |
| AGCAAAGACAAAGAGAAAGG+TGG | 0.654285 | 1_1:-13052232 | None:intergenic |
| AGTGGAGTAGGGTACACTCA+AGG | 0.668556 | 1_1:+13053112 | Msa0008970:CDS |
| GCCACCGGAAATATGAGCGG+CGG | 0.678011 | 1_1:-13052561 | None:intergenic |
| TCGAACGAACGATAGTGATG+TGG | 0.680663 | 1_1:-13052625 | None:intergenic |
| TGCGTTAGGAACAACCAGAG+AGG | 0.706593 | 1_1:+13052164 | Msa0008970:CDS |
| AAGGAGGCCCAAAGTCACGG+CGG | 0.714164 | 1_1:-13052594 | None:intergenic |
| TGATGTGGCCTCCAACAAGG+AGG | 0.716697 | 1_1:-13052610 | None:intergenic |
| ATGGCCACCGGAAATATGAG+CGG | 0.716960 | 1_1:-13052564 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATTTTTATTTATCTAC+CGG | - | chr1_1:13053553-13053572 | None:intergenic | 10.0% |
| !!! | ATATATTTTTATTTATCTAC+CGG | - | chr1_1:13053553-13053572 | None:intergenic | 10.0% |
| !! | AAATTACATTGAAAATTGAA+TGG | - | chr1_1:13052399-13052418 | None:intergenic | 15.0% |
| !!! | ATTTTTAAGGTACAAAAAAT+TGG | + | chr1_1:13052791-13052810 | Msa0008970:intron | 15.0% |
| !!! | TTTTTAAGGTACAAAAAATT+GGG | + | chr1_1:13052792-13052811 | Msa0008970:intron | 15.0% |
| !! | TGTAATAAATGTAATATTTG+AGG | + | chr1_1:13052828-13052847 | Msa0008970:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_1:13052855-13052874 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_1:13052853-13052872 | Msa0008970:intron | 15.0% |
| !!! | TCAATTTTATTGTATGTATA+AGG | - | chr1_1:13052941-13052960 | None:intergenic | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_1:13052978-13052997 | Msa0008970:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | - | chr1_1:13053552-13053571 | None:intergenic | 15.0% |
| !! | AAATTACATTGAAAATTGAA+TGG | - | chr1_1:13052399-13052418 | None:intergenic | 15.0% |
| !!! | ATTTTTAAGGTACAAAAAAT+TGG | + | chr1_1:13052791-13052810 | Msa0008970:intron | 15.0% |
| !!! | TTTTTAAGGTACAAAAAATT+GGG | + | chr1_1:13052792-13052811 | Msa0008970:intron | 15.0% |
| !! | TGTAATAAATGTAATATTTG+AGG | + | chr1_1:13052828-13052847 | Msa0008970:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_1:13052855-13052874 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_1:13052853-13052872 | Msa0008970:intron | 15.0% |
| !!! | TCAATTTTATTGTATGTATA+AGG | - | chr1_1:13052941-13052960 | None:intergenic | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_1:13052978-13052997 | Msa0008970:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+GGG | - | chr1_1:13053552-13053571 | None:intergenic | 15.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_1:13052059-13052078 | Msa0008970:five_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAA+GGG | - | chr1_1:13052376-13052395 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | - | chr1_1:13052465-13052484 | None:intergenic | 20.0% |
| !!! | CTAAAAAAAGTGGTAATTTT+TGG | - | chr1_1:13052758-13052777 | None:intergenic | 20.0% |
| !!! | CAAAAATTACCACTTTTTTT+AGG | + | chr1_1:13052756-13052775 | Msa0008970:intron | 20.0% |
| !!! | GTTACAAATCATCATTTTTA+AGG | + | chr1_1:13052778-13052797 | Msa0008970:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_1:13052856-13052875 | Msa0008970:intron | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_1:13052977-13052996 | Msa0008970:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_1:13053457-13053476 | Msa0008970:exon | 20.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_1:13052059-13052078 | Msa0008970:five_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAA+GGG | - | chr1_1:13052376-13052395 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | - | chr1_1:13052465-13052484 | None:intergenic | 20.0% |
| !!! | CTAAAAAAAGTGGTAATTTT+TGG | - | chr1_1:13052758-13052777 | None:intergenic | 20.0% |
| !!! | CAAAAATTACCACTTTTTTT+AGG | + | chr1_1:13052756-13052775 | Msa0008970:intron | 20.0% |
| !!! | GTTACAAATCATCATTTTTA+AGG | + | chr1_1:13052778-13052797 | Msa0008970:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_1:13052856-13052875 | Msa0008970:intron | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_1:13052977-13052996 | Msa0008970:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_1:13053457-13053476 | Msa0008970:exon | 20.0% |
| ! | ATAACAAGGGATGAAATTAA+TGG | - | chr1_1:13052363-13052382 | None:intergenic | 25.0% |
| ! | GCATTTCAATTCAAATAACA+AGG | - | chr1_1:13052377-13052396 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | + | chr1_1:13052424-13052443 | Msa0008970:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_1:13052473-13052492 | Msa0008970:intron | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | - | chr1_1:13052768-13052787 | None:intergenic | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_1:13052869-13052888 | Msa0008970:intron | 25.0% |
| ! | CAACAATAAAAGACAAAAAC+AGG | - | chr1_1:13053017-13053036 | None:intergenic | 25.0% |
| !!! | CTGTTTTTGTCTTTTATTGT+TGG | + | chr1_1:13053015-13053034 | Msa0008970:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | + | chr1_1:13053468-13053487 | Msa0008970:three_prime_UTR | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | + | chr1_1:13053469-13053488 | Msa0008970:three_prime_UTR | 25.0% |
| ! | ATAACAAGGGATGAAATTAA+TGG | - | chr1_1:13052363-13052382 | None:intergenic | 25.0% |
| ! | GCATTTCAATTCAAATAACA+AGG | - | chr1_1:13052377-13052396 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | + | chr1_1:13052424-13052443 | Msa0008970:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_1:13052473-13052492 | Msa0008970:intron | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | - | chr1_1:13052768-13052787 | None:intergenic | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_1:13052869-13052888 | Msa0008970:intron | 25.0% |
| ! | CAACAATAAAAGACAAAAAC+AGG | - | chr1_1:13053017-13053036 | None:intergenic | 25.0% |
| !!! | CTGTTTTTGTCTTTTATTGT+TGG | + | chr1_1:13053015-13053034 | Msa0008970:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | + | chr1_1:13053468-13053487 | Msa0008970:three_prime_UTR | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | + | chr1_1:13053469-13053488 | Msa0008970:three_prime_UTR | 25.0% |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_1:13052071-13052090 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGT+AGG | + | chr1_1:13052096-13052115 | Msa0008970:five_prime_UTR | 30.0% |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_1:13052652-13052671 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_1:13052692-13052711 | Msa0008970:CDS | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | - | chr1_1:13053488-13053507 | None:intergenic | 30.0% |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_1:13052071-13052090 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGT+AGG | + | chr1_1:13052096-13052115 | Msa0008970:five_prime_UTR | 30.0% |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_1:13052652-13052671 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_1:13052692-13052711 | Msa0008970:CDS | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | - | chr1_1:13053488-13053507 | None:intergenic | 30.0% |
| ACATTGCAAATCAGAAACCA+TGG | + | chr1_1:13052134-13052153 | Msa0008970:exon | 35.0% | |
| ! | AGGGATGAAATTAATGGATG+AGG | - | chr1_1:13052357-13052376 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_1:13052504-13052523 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_1:13052502-13052521 | Msa0008970:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_1:13053333-13053352 | Msa0008970:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_1:13053342-13053361 | Msa0008970:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_1:13053439-13053458 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | + | chr1_1:13053531-13053550 | Msa0008970:three_prime_UTR | 35.0% |
| ACATTGCAAATCAGAAACCA+TGG | + | chr1_1:13052134-13052153 | Msa0008970:exon | 35.0% | |
| ! | AGGGATGAAATTAATGGATG+AGG | - | chr1_1:13052357-13052376 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_1:13052504-13052523 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_1:13052502-13052521 | Msa0008970:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_1:13053333-13053352 | Msa0008970:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_1:13053342-13053361 | Msa0008970:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_1:13053439-13053458 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+CGG | + | chr1_1:13053531-13053550 | Msa0008970:three_prime_UTR | 35.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | - | chr1_1:13052160-13052179 | None:intergenic | 40.0% |
| ACTAGAGCTTGAATGCAATC+AGG | - | chr1_1:13052198-13052217 | None:intergenic | 40.0% | |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_1:13052235-13052254 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_1:13052234-13052253 | Msa0008970:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_1:13052238-13052257 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_1:13052636-13052655 | Msa0008970:CDS | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | - | chr1_1:13052667-13052686 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_1:13052695-13052714 | Msa0008970:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_1:13052700-13052719 | Msa0008970:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_1:13053101-13053120 | Msa0008970:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_1:13053123-13053142 | Msa0008970:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_1:13053187-13053206 | Msa0008970:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_1:13053191-13053210 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_1:13053295-13053314 | Msa0008970:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_1:13053296-13053315 | Msa0008970:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_1:13053322-13053341 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_1:13053320-13053339 | Msa0008970:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_1:13053332-13053351 | Msa0008970:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_1:13053341-13053360 | Msa0008970:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_1:13053346-13053365 | Msa0008970:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_1:13053358-13053377 | Msa0008970:CDS | 40.0% |
| ! | GGTTGTTCCTAACGCAATTT+TGG | - | chr1_1:13052160-13052179 | None:intergenic | 40.0% |
| ACTAGAGCTTGAATGCAATC+AGG | - | chr1_1:13052198-13052217 | None:intergenic | 40.0% | |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_1:13052235-13052254 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_1:13052234-13052253 | Msa0008970:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_1:13052238-13052257 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_1:13052636-13052655 | Msa0008970:CDS | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | - | chr1_1:13052667-13052686 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_1:13052695-13052714 | Msa0008970:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_1:13052700-13052719 | Msa0008970:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_1:13053101-13053120 | Msa0008970:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_1:13053123-13053142 | Msa0008970:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_1:13053187-13053206 | Msa0008970:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_1:13053191-13053210 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_1:13053295-13053314 | Msa0008970:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_1:13053296-13053315 | Msa0008970:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_1:13053322-13053341 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_1:13053320-13053339 | Msa0008970:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_1:13053332-13053351 | Msa0008970:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_1:13053341-13053360 | Msa0008970:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_1:13053346-13053365 | Msa0008970:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_1:13053358-13053377 | Msa0008970:CDS | 40.0% |
| ACCATGGCCAAAATTGCGTT+AGG | + | chr1_1:13052150-13052169 | Msa0008970:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | - | chr1_1:13052154-13052173 | None:intergenic | 45.0% |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_1:13052240-13052259 | Msa0008970:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | + | chr1_1:13052445-13052464 | Msa0008970:intron | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_1:13052488-13052507 | Msa0008970:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_1:13052526-13052545 | Msa0008970:CDS | 45.0% | |
| TCGAACGAACGATAGTGATG+TGG | - | chr1_1:13052628-13052647 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_1:13053100-13053119 | Msa0008970:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_1:13053122-13053141 | Msa0008970:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_1:13053171-13053190 | Msa0008970:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_1:13053231-13053250 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_1:13053232-13053251 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_1:13053231-13053250 | Msa0008970:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_1:13053232-13053251 | Msa0008970:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_1:13053290-13053309 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_1:13053306-13053325 | Msa0008970:CDS | 45.0% |
| ACCATGGCCAAAATTGCGTT+AGG | + | chr1_1:13052150-13052169 | Msa0008970:exon | 45.0% | |
| !! | TCCTAACGCAATTTTGGCCA+TGG | - | chr1_1:13052154-13052173 | None:intergenic | 45.0% |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_1:13052240-13052259 | Msa0008970:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | + | chr1_1:13052445-13052464 | Msa0008970:intron | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_1:13052488-13052507 | Msa0008970:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_1:13052526-13052545 | Msa0008970:CDS | 45.0% | |
| TCGAACGAACGATAGTGATG+TGG | - | chr1_1:13052628-13052647 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_1:13053100-13053119 | Msa0008970:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_1:13053122-13053141 | Msa0008970:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_1:13053171-13053190 | Msa0008970:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_1:13053231-13053250 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_1:13053232-13053251 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_1:13053231-13053250 | Msa0008970:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_1:13053232-13053251 | Msa0008970:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_1:13053290-13053309 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_1:13053306-13053325 | Msa0008970:CDS | 45.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_1:13052909-13052928 | Msa0008970:intron | 5.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_1:13052909-13052928 | Msa0008970:intron | 5.0% |
| TGCGTTAGGAACAACCAGAG+AGG | + | chr1_1:13052164-13052183 | Msa0008970:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+AGG | + | chr1_1:13052258-13052277 | Msa0008970:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_1:13052487-13052506 | Msa0008970:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_1:13052523-13052542 | Msa0008970:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_1:13052557-13052576 | Msa0008970:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_1:13052567-13052586 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_1:13052586-13052605 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_1:13052586-13052605 | Msa0008970:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_1:13052587-13052606 | Msa0008970:CDS | 50.0% | |
| AACAAGGAGGCCCAAAGTCA+CGG | - | chr1_1:13052600-13052619 | None:intergenic | 50.0% | |
| TAGTGATGTGGCCTCCAACA+AGG | - | chr1_1:13052616-13052635 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_1:13053097-13053116 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_1:13053094-13053113 | Msa0008970:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_1:13053112-13053131 | Msa0008970:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_1:13053202-13053221 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_1:13053199-13053218 | Msa0008970:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_1:13053228-13053247 | Msa0008970:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_1:13053233-13053252 | Msa0008970:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_1:13053234-13053253 | Msa0008970:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_1:13053303-13053322 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_1:13053313-13053332 | Msa0008970:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_1:13053361-13053380 | Msa0008970:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_1:13053364-13053383 | Msa0008970:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_1:13053373-13053392 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_1:13053373-13053392 | Msa0008970:CDS | 50.0% |
| TGCGTTAGGAACAACCAGAG+AGG | + | chr1_1:13052164-13052183 | Msa0008970:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+AGG | + | chr1_1:13052258-13052277 | Msa0008970:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_1:13052487-13052506 | Msa0008970:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_1:13052523-13052542 | Msa0008970:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_1:13052557-13052576 | Msa0008970:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_1:13052567-13052586 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_1:13052586-13052605 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_1:13052586-13052605 | Msa0008970:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_1:13052587-13052606 | Msa0008970:CDS | 50.0% | |
| AACAAGGAGGCCCAAAGTCA+CGG | - | chr1_1:13052600-13052619 | None:intergenic | 50.0% | |
| TAGTGATGTGGCCTCCAACA+AGG | - | chr1_1:13052616-13052635 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_1:13053097-13053116 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_1:13053094-13053113 | Msa0008970:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_1:13053112-13053131 | Msa0008970:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_1:13053202-13053221 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_1:13053199-13053218 | Msa0008970:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_1:13053228-13053247 | Msa0008970:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_1:13053233-13053252 | Msa0008970:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_1:13053234-13053253 | Msa0008970:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_1:13053303-13053322 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_1:13053313-13053332 | Msa0008970:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_1:13053361-13053380 | Msa0008970:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_1:13053364-13053383 | Msa0008970:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_1:13053373-13053392 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_1:13053373-13053392 | Msa0008970:CDS | 50.0% |
| ATCAGGCTGAGTAGCCTCTC+TGG | - | chr1_1:13052181-13052200 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+TGG | + | chr1_1:13052599-13052618 | Msa0008970:CDS | 55.0% | |
| ACTTTGGGCCTCCTTGTTGG+AGG | + | chr1_1:13052602-13052621 | Msa0008970:CDS | 55.0% | |
| TGATGTGGCCTCCAACAAGG+AGG | - | chr1_1:13052613-13052632 | None:intergenic | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_1:13053205-13053224 | Msa0008970:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_1:13053221-13053240 | Msa0008970:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_1:13053225-13053244 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_1:13053236-13053255 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_1:13053254-13053273 | Msa0008970:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_1:13053255-13053274 | Msa0008970:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_1:13053264-13053283 | Msa0008970:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_1:13053304-13053323 | None:intergenic | 55.0% | |
| ATCAGGCTGAGTAGCCTCTC+TGG | - | chr1_1:13052181-13052200 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+TGG | + | chr1_1:13052599-13052618 | Msa0008970:CDS | 55.0% | |
| ACTTTGGGCCTCCTTGTTGG+AGG | + | chr1_1:13052602-13052621 | Msa0008970:CDS | 55.0% | |
| TGATGTGGCCTCCAACAAGG+AGG | - | chr1_1:13052613-13052632 | None:intergenic | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_1:13053205-13053224 | Msa0008970:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_1:13053221-13053240 | Msa0008970:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_1:13053225-13053244 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_1:13053236-13053255 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_1:13053254-13053273 | Msa0008970:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_1:13053255-13053274 | Msa0008970:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_1:13053264-13053283 | Msa0008970:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_1:13053304-13053323 | None:intergenic | 55.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_1:13052560-13052579 | Msa0008970:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_1:13052564-13052583 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_1:13052579-13052598 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_1:13052597-13052616 | None:intergenic | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_1:13053220-13053239 | Msa0008970:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_1:13053250-13053269 | Msa0008970:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_1:13053253-13053272 | Msa0008970:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_1:13053267-13053286 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_1:13052560-13052579 | Msa0008970:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_1:13052564-13052583 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_1:13052579-13052598 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_1:13052597-13052616 | None:intergenic | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_1:13053220-13053239 | Msa0008970:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_1:13053250-13053269 | Msa0008970:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_1:13053253-13053272 | Msa0008970:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_1:13053267-13053286 | None:intergenic | 60.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_1:13052596-13052615 | None:intergenic | 65.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_1:13052596-13052615 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13052022 | 13053610 | 13052022 | ID=Msa0008970;Name=Msa0008970 |
| chr1_1 | mRNA | 13052022 | 13053610 | 13052022 | ID=Msa0008970-mRNA-1;Parent=Msa0008970;Name=Msa0008970-mRNA-1;_AED=0.25;_eAED=0.25;_QI=131|1|1|1|1|1|3|145|247 |
| chr1_1 | exon | 13052022 | 13052279 | 13052022 | ID=Msa0008970-mRNA-1:exon:4913;Parent=Msa0008970-mRNA-1 |
| chr1_1 | exon | 13052483 | 13052721 | 13052483 | ID=Msa0008970-mRNA-1:exon:4914;Parent=Msa0008970-mRNA-1 |
| chr1_1 | exon | 13053088 | 13053610 | 13053088 | ID=Msa0008970-mRNA-1:exon:4915;Parent=Msa0008970-mRNA-1 |
| chr1_1 | five_prime_UTR | 13052022 | 13052152 | 13052022 | ID=Msa0008970-mRNA-1:five_prime_utr;Parent=Msa0008970-mRNA-1 |
| chr1_1 | CDS | 13052153 | 13052279 | 13052153 | ID=Msa0008970-mRNA-1:cds;Parent=Msa0008970-mRNA-1 |
| chr1_1 | CDS | 13052483 | 13052721 | 13052483 | ID=Msa0008970-mRNA-1:cds;Parent=Msa0008970-mRNA-1 |
| chr1_1 | CDS | 13053088 | 13053465 | 13053088 | ID=Msa0008970-mRNA-1:cds;Parent=Msa0008970-mRNA-1 |
| chr1_1 | three_prime_UTR | 13053466 | 13053610 | 13053466 | ID=Msa0008970-mRNA-1:three_prime_utr;Parent=Msa0008970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
