Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103600 | sp|O82316|TIP41_ARATH | 78.776 | 245 | 52 | 0 | 1 | 245 | 1 | 245 | 2.64e-131 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103600 | G7IB33 | 99.190 | 247 | 2 | 0 | 1 | 247 | 1 | 247 | 1.58e-173 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008970 | Msa0103600 | 0.937448 | 3.407931e-98 | -8.615850e-47 |
| Msa0058750 | Msa0103600 | 0.828711 | 7.724113e-55 | -8.615850e-47 |
| Msa0103600 | Msa0158280 | 0.863869 | 1.829161e-64 | -8.615850e-47 |
| Msa0103600 | Msa1019220 | 0.801372 | 9.287312e-49 | -8.615850e-47 |
| Msa0103600 | Msa1019230 | 0.813228 | 2.847027e-51 | -8.615850e-47 |
| Msa0103600 | Msa1104130 | 0.829561 | 4.803900e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103600 | MtrunA17_Chr1g0146161 | 99.190 | 247 | 2 | 0 | 1 | 247 | 1 | 247 | 3.05e-177 | 486 |
| Msa0103600 | MtrunA17_Chr1g0146171 | 85.830 | 247 | 35 | 0 | 1 | 247 | 1 | 247 | 1.13e-155 | 432 |
| Msa0103600 | MtrunA17_Chr8g0340161 | 57.661 | 248 | 99 | 3 | 1 | 243 | 1 | 247 | 9.24e-92 | 270 |
| Msa0103600 | MtrunA17_Chr2g0331261 | 56.967 | 244 | 101 | 3 | 4 | 243 | 5 | 248 | 7.70e-90 | 265 |
| Msa0103600 | MtrunA17_Chr4g0030861 | 54.430 | 237 | 104 | 2 | 1 | 233 | 3 | 239 | 1.37e-81 | 244 |
| Msa0103600 | MtrunA17_Chr7g0264961 | 54.098 | 244 | 107 | 3 | 1 | 240 | 3 | 245 | 6.23e-80 | 240 |
| Msa0103600 | MtrunA17_Chr1g0212671 | 51.667 | 240 | 111 | 3 | 3 | 238 | 5 | 243 | 1.11e-79 | 240 |
| Msa0103600 | MtrunA17_Chr7g0222791 | 53.498 | 243 | 108 | 3 | 3 | 240 | 5 | 247 | 1.09e-78 | 237 |
| Msa0103600 | MtrunA17_Chr5g0399341 | 53.012 | 249 | 109 | 4 | 1 | 244 | 1 | 246 | 3.88e-78 | 236 |
| Msa0103600 | MtrunA17_Chr1g0188771 | 44.269 | 253 | 130 | 3 | 3 | 244 | 5 | 257 | 3.97e-70 | 216 |
| Msa0103600 | MtrunA17_Chr6g0478191 | 44.400 | 250 | 131 | 3 | 3 | 244 | 5 | 254 | 9.88e-68 | 209 |
| Msa0103600 | MtrunA17_Chr4g0020781 | 41.361 | 191 | 107 | 3 | 57 | 243 | 20 | 209 | 1.25e-41 | 141 |
| Msa0103600 | MtrunA17_Chr5g0426131 | 34.874 | 238 | 142 | 7 | 14 | 247 | 32 | 260 | 1.46e-33 | 122 |
| Msa0103600 | MtrunA17_Chr1g0199731 | 35.600 | 250 | 129 | 9 | 10 | 235 | 30 | 271 | 1.14e-31 | 117 |
| Msa0103600 | MtrunA17_Chr7g0264111 | 33.878 | 245 | 141 | 7 | 9 | 234 | 29 | 271 | 3.37e-31 | 116 |
| Msa0103600 | MtrunA17_Chr2g0284611 | 36.052 | 233 | 140 | 6 | 18 | 247 | 37 | 263 | 9.04e-31 | 115 |
| Msa0103600 | MtrunA17_Chr2g0326621 | 34.008 | 247 | 135 | 9 | 11 | 234 | 32 | 273 | 1.34e-30 | 115 |
| Msa0103600 | MtrunA17_Chr4g0001221 | 37.073 | 205 | 109 | 7 | 24 | 220 | 80 | 272 | 2.46e-30 | 114 |
| Msa0103600 | MtrunA17_Chr3g0145671 | 34.335 | 233 | 130 | 8 | 19 | 234 | 37 | 263 | 6.75e-30 | 112 |
| Msa0103600 | MtrunA17_Chr2g0333771 | 37.073 | 205 | 109 | 7 | 24 | 220 | 85 | 277 | 7.15e-30 | 113 |
| Msa0103600 | MtrunA17_Chr1g0201331 | 35.841 | 226 | 126 | 7 | 19 | 237 | 74 | 287 | 5.53e-29 | 110 |
| Msa0103600 | MtrunA17_Chr4g0006001 | 35.088 | 228 | 126 | 7 | 19 | 229 | 56 | 278 | 1.29e-28 | 109 |
| Msa0103600 | MtrunA17_Chr5g0397391 | 34.199 | 231 | 125 | 7 | 19 | 229 | 52 | 275 | 2.09e-28 | 109 |
| Msa0103600 | MtrunA17_Chr5g0435051 | 36.522 | 230 | 137 | 7 | 18 | 245 | 39 | 261 | 5.74e-28 | 107 |
| Msa0103600 | MtrunA17_Chr4g0029071 | 33.865 | 251 | 131 | 11 | 10 | 234 | 30 | 271 | 1.69e-27 | 106 |
| Msa0103600 | MtrunA17_Chr2g0284591 | 34.335 | 233 | 144 | 6 | 18 | 247 | 35 | 261 | 2.67e-27 | 105 |
| Msa0103600 | MtrunA17_Chr8g0386961 | 32.900 | 231 | 128 | 7 | 19 | 229 | 52 | 275 | 7.40e-27 | 105 |
| Msa0103600 | MtrunA17_Chr3g0079421 | 37.327 | 217 | 127 | 7 | 18 | 232 | 25 | 234 | 1.80e-26 | 103 |
| Msa0103600 | MtrunA17_Chr5g0436701 | 35.135 | 222 | 125 | 7 | 19 | 224 | 55 | 273 | 5.83e-26 | 102 |
| Msa0103600 | MtrunA17_Chr3g0113211 | 32.895 | 228 | 138 | 6 | 11 | 224 | 47 | 273 | 1.02e-25 | 102 |
| Msa0103600 | MtrunA17_Chr2g0284631 | 33.621 | 232 | 138 | 9 | 18 | 244 | 90 | 310 | 3.89e-25 | 101 |
| Msa0103600 | MtrunA17_Chr7g0217331 | 34.906 | 212 | 130 | 5 | 19 | 228 | 37 | 242 | 4.35e-24 | 97.4 |
| Msa0103600 | MtrunA17_Chr8g0379901 | 33.023 | 215 | 135 | 6 | 18 | 229 | 38 | 246 | 1.09e-23 | 96.3 |
| Msa0103600 | MtrunA17_Chr8g0379911 | 32.558 | 215 | 136 | 6 | 18 | 229 | 37 | 245 | 9.13e-23 | 94.0 |
| Msa0103600 | MtrunA17_Chr2g0284581 | 31.696 | 224 | 137 | 7 | 7 | 220 | 19 | 236 | 9.61e-22 | 91.3 |
| Msa0103600 | MtrunA17_Chr4g0044201 | 33.182 | 220 | 117 | 7 | 18 | 229 | 34 | 231 | 1.86e-20 | 87.4 |
| Msa0103600 | MtrunA17_Chr1g0184541 | 30.769 | 221 | 144 | 6 | 19 | 237 | 62 | 275 | 9.54e-19 | 83.2 |
| Msa0103600 | MtrunA17_Chr2g0284601 | 34.574 | 188 | 116 | 5 | 36 | 220 | 5 | 188 | 1.47e-18 | 81.6 |
| Msa0103600 | MtrunA17_Chr4g0038591 | 27.481 | 262 | 157 | 8 | 10 | 247 | 42 | 294 | 1.18e-17 | 80.9 |
| Msa0103600 | MtrunA17_Chr4g0001111 | 35.172 | 145 | 78 | 5 | 24 | 161 | 80 | 215 | 2.96e-16 | 75.5 |
| Msa0103600 | MtrunA17_Chr4g0038611 | 32.178 | 202 | 108 | 7 | 67 | 245 | 35 | 230 | 5.58e-16 | 75.1 |
| Msa0103600 | MtrunA17_Chr4g0001161 | 32.847 | 137 | 76 | 5 | 32 | 161 | 1 | 128 | 6.75e-12 | 61.6 |
| Msa0103600 | MtrunA17_Chr6g0467461 | 31.132 | 106 | 54 | 2 | 125 | 230 | 4 | 90 | 1.37e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103600 | AT2G25810.1 | 78.776 | 245 | 52 | 0 | 1 | 245 | 1 | 245 | 2.68e-132 | 373 |
| Msa0103600 | AT2G36830.1 | 56.198 | 242 | 102 | 2 | 3 | 240 | 5 | 246 | 3.73e-90 | 266 |
| Msa0103600 | AT3G16240.1 | 56.098 | 246 | 101 | 4 | 1 | 240 | 1 | 245 | 5.65e-90 | 266 |
| Msa0103600 | AT3G26520.1 | 55.556 | 234 | 100 | 2 | 7 | 236 | 10 | 243 | 6.31e-85 | 253 |
| Msa0103600 | AT5G47450.1 | 53.975 | 239 | 106 | 2 | 1 | 235 | 1 | 239 | 1.59e-83 | 250 |
| Msa0103600 | AT4G01470.1 | 51.822 | 247 | 114 | 3 | 3 | 244 | 5 | 251 | 4.01e-81 | 244 |
| Msa0103600 | AT4G17340.1 | 54.583 | 240 | 103 | 2 | 1 | 235 | 1 | 239 | 1.12e-79 | 240 |
| Msa0103600 | AT1G73190.1 | 48.638 | 257 | 114 | 3 | 6 | 244 | 11 | 267 | 1.85e-74 | 227 |
| Msa0103600 | AT1G17810.1 | 49.383 | 243 | 114 | 2 | 6 | 239 | 11 | 253 | 5.57e-71 | 218 |
| Msa0103600 | AT3G47440.1 | 42.466 | 219 | 121 | 3 | 16 | 230 | 20 | 237 | 2.47e-50 | 165 |
| Msa0103600 | AT5G60660.1 | 34.746 | 236 | 132 | 8 | 19 | 235 | 39 | 271 | 1.82e-31 | 117 |
| Msa0103600 | AT4G35100.1 | 35.776 | 232 | 128 | 9 | 19 | 234 | 38 | 264 | 1.90e-31 | 117 |
| Msa0103600 | AT4G35100.2 | 35.776 | 232 | 128 | 9 | 19 | 234 | 38 | 264 | 1.90e-31 | 117 |
| Msa0103600 | AT2G37170.1 | 33.745 | 243 | 131 | 8 | 11 | 229 | 29 | 265 | 2.18e-31 | 117 |
| Msa0103600 | AT2G37180.1 | 34.855 | 241 | 133 | 8 | 10 | 229 | 28 | 265 | 2.20e-31 | 117 |
| Msa0103600 | AT2G37170.2 | 33.745 | 243 | 131 | 8 | 11 | 229 | 72 | 308 | 3.64e-31 | 117 |
| Msa0103600 | AT3G54820.1 | 33.913 | 230 | 132 | 6 | 19 | 229 | 38 | 266 | 1.40e-30 | 115 |
| Msa0103600 | AT3G53420.1 | 34.348 | 230 | 131 | 7 | 19 | 229 | 39 | 267 | 5.21e-30 | 114 |
| Msa0103600 | AT3G53420.2 | 34.348 | 230 | 131 | 7 | 19 | 229 | 39 | 267 | 5.21e-30 | 114 |
| Msa0103600 | AT1G80760.1 | 36.842 | 209 | 114 | 6 | 19 | 220 | 80 | 277 | 6.42e-30 | 114 |
| Msa0103600 | AT2G16850.1 | 34.483 | 232 | 131 | 9 | 19 | 234 | 36 | 262 | 1.85e-29 | 112 |
| Msa0103600 | AT2G39010.1 | 33.473 | 239 | 139 | 7 | 10 | 229 | 29 | 266 | 5.28e-29 | 111 |
| Msa0103600 | AT4G00430.1 | 35.683 | 227 | 126 | 8 | 19 | 229 | 53 | 275 | 1.52e-28 | 109 |
| Msa0103600 | AT1G01620.1 | 34.802 | 227 | 128 | 8 | 19 | 229 | 52 | 274 | 1.58e-27 | 107 |
| Msa0103600 | AT4G10380.1 | 34.081 | 223 | 129 | 6 | 19 | 234 | 78 | 289 | 1.87e-27 | 107 |
| Msa0103600 | AT4G19030.1 | 35.747 | 221 | 128 | 7 | 18 | 229 | 54 | 269 | 2.81e-27 | 106 |
| Msa0103600 | AT4G23400.1 | 34.375 | 224 | 133 | 6 | 19 | 229 | 53 | 275 | 3.68e-27 | 106 |
| Msa0103600 | AT3G61430.2 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 1.03e-26 | 105 |
| Msa0103600 | AT3G61430.1 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 1.03e-26 | 105 |
| Msa0103600 | AT2G45960.1 | 36.000 | 225 | 118 | 8 | 19 | 224 | 52 | 269 | 1.03e-26 | 105 |
| Msa0103600 | AT5G37820.1 | 37.004 | 227 | 123 | 9 | 19 | 237 | 43 | 257 | 3.24e-26 | 103 |
| Msa0103600 | AT5G37820.2 | 36.522 | 230 | 125 | 9 | 19 | 240 | 79 | 295 | 5.92e-26 | 103 |
| Msa0103600 | AT4G18910.1 | 35.586 | 222 | 127 | 7 | 18 | 229 | 51 | 266 | 3.91e-25 | 100 |
| Msa0103600 | AT5G37810.1 | 35.371 | 229 | 126 | 8 | 12 | 229 | 33 | 250 | 8.26e-25 | 99.8 |
| Msa0103600 | AT1G31885.1 | 35.681 | 213 | 123 | 7 | 18 | 221 | 42 | 249 | 2.82e-24 | 99.4 |
| Msa0103600 | AT1G52180.1 | 51.163 | 86 | 42 | 0 | 125 | 210 | 39 | 124 | 3.46e-23 | 91.7 |
| Msa0103600 | AT1G01620.2 | 34.066 | 182 | 102 | 6 | 62 | 229 | 25 | 202 | 4.60e-23 | 93.6 |
| Msa0103600 | AT1G31885.2 | 34.673 | 199 | 116 | 7 | 31 | 220 | 1 | 194 | 3.18e-19 | 84.7 |
| Msa0103600 | AT2G45960.2 | 33.649 | 211 | 114 | 8 | 19 | 210 | 52 | 255 | 1.72e-18 | 82.8 |
| Msa0103600 | AT2G45960.3 | 33.649 | 211 | 114 | 8 | 19 | 210 | 52 | 255 | 2.65e-18 | 82.4 |
| Msa0103600 | AT3G06100.1 | 30.374 | 214 | 144 | 5 | 18 | 230 | 45 | 254 | 1.18e-17 | 80.5 |
| Msa0103600 | AT3G06100.2 | 31.250 | 208 | 138 | 5 | 24 | 230 | 3 | 206 | 2.58e-17 | 78.6 |
| Msa0103600 | AT2G34390.1 | 30.769 | 221 | 138 | 7 | 18 | 229 | 47 | 261 | 3.60e-17 | 79.3 |
| Msa0103600 | AT2G34390.2 | 30.734 | 218 | 136 | 7 | 21 | 229 | 8 | 219 | 2.43e-16 | 76.3 |
| Msa0103600 | AT4G00430.2 | 35.484 | 155 | 87 | 6 | 19 | 164 | 53 | 203 | 1.72e-14 | 70.9 |
| Msa0103600 | AT2G39010.2 | 32.335 | 167 | 100 | 5 | 10 | 164 | 29 | 194 | 8.09e-14 | 68.9 |
| Msa0103600 | AT4G19030.3 | 33.908 | 174 | 101 | 7 | 18 | 182 | 54 | 222 | 5.08e-13 | 66.6 |
| Msa0103600 | AT4G19030.2 | 32.895 | 152 | 92 | 5 | 18 | 161 | 54 | 203 | 1.12e-11 | 62.8 |
| Msa0103600 | AT4G18910.2 | 34.270 | 178 | 101 | 7 | 18 | 185 | 51 | 222 | 1.68e-11 | 62.4 |
Find 88 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAATTTGCCTTTATAAAT+TGG | 0.183363 | 1_3:+10822735 | Msa0103600:five_prime_UTR |
| CCAGCAAGTGCTCCTTTCTT+TGG | 0.194627 | 1_3:-10823875 | None:intergenic |
| ACCTTTCTCTTTGTCTTTGC+TGG | 0.204008 | 1_3:+10822909 | Msa0103600:CDS |
| GGTTGTTCCTAATGCAATTT+TGG | 0.213553 | 1_3:-10822832 | None:intergenic |
| GGACTGATCATTGGGTTTAT+TGG | 0.222150 | 1_3:+10824017 | Msa0103600:CDS |
| ATGAACCCTGCAAGATCTTT+TGG | 0.224227 | 1_3:+10823971 | Msa0103600:CDS |
| CTGCTTTGGTTAGTGGAAAT+TGG | 0.234876 | 1_3:+10823996 | Msa0103600:CDS |
| TATTGGGTTGGACCACTTAT+TGG | 0.235959 | 1_3:+10824034 | Msa0103600:CDS |
| GGCCTTGGCCCAACCTTAGT+TGG | 0.243998 | 1_3:+10823896 | Msa0103600:CDS |
| CTCTTTGTCTTTGCTGGTGT+TGG | 0.290840 | 1_3:+10822915 | Msa0103600:CDS |
| TTGAATCCCGCCGTGACTTT+GGG | 0.304849 | 1_3:+10823264 | Msa0103600:CDS |
| TTTGAATCCCGCCGTGACTT+TGG | 0.311719 | 1_3:+10823263 | Msa0103600:CDS |
| GACTGATCATTGGGTTTATT+GGG | 0.313313 | 1_3:+10824018 | Msa0103600:CDS |
| CTTATTGGTGGTGGACTTGC+TGG | 0.315006 | 1_3:+10824049 | Msa0103600:CDS |
| TTTGGGCCTGCTTTGGTTAG+TGG | 0.316883 | 1_3:+10823989 | Msa0103600:CDS |
| CTTAGTTGGGTTTGTGGTGG+GGG | 0.319883 | 1_3:+10823910 | Msa0103600:CDS |
| GTGACTTTGGGCCTCCTTGT+TGG | 0.325239 | 1_3:+10823276 | Msa0103600:CDS |
| ACCTTAGTTGGGTTTGTGGT+GGG | 0.325499 | 1_3:+10823908 | Msa0103600:CDS |
| ATCTCCGCCGCTCATATTTC+CGG | 0.326476 | 1_3:+10823234 | Msa0103600:CDS |
| GGGGCTAACATCCTTGCTGG+TGG | 0.334049 | 1_3:+10823929 | Msa0103600:CDS |
| TCGTTCGTTCGATCCTATAT+TGG | 0.337543 | 1_3:+10823313 | Msa0103600:CDS |
| TATCTTCTTCATTATCTCTC+TGG | 0.355133 | 1_3:+10823369 | Msa0103600:CDS |
| GCCTTGGCCCAACCTTAGTT+GGG | 0.359318 | 1_3:+10823897 | Msa0103600:CDS |
| GGGCTAACATCCTTGCTGGT+GGG | 0.361838 | 1_3:+10823930 | Msa0103600:CDS |
| CCCAACCTTAGTTGGGTTTG+TGG | 0.373101 | 1_3:+10823904 | Msa0103600:CDS |
| GGTACACTCAAGGAGTAGTT+TGG | 0.375382 | 1_3:+10823798 | Msa0103600:CDS |
| GTGGAAATTGGACTGATCAT+TGG | 0.389374 | 1_3:+10824008 | Msa0103600:CDS |
| TCAATTGGTCAATCCAATAT+AGG | 0.391166 | 1_3:-10823326 | None:intergenic |
| AAGAAGCTGCCAATTTATAA+AGG | 0.391641 | 1_3:-10822744 | None:intergenic |
| AAAGGAGCACTTGCTGGCCT+TGG | 0.398295 | 1_3:+10823881 | Msa0103600:CDS |
| TGGAAATTGGACTGATCATT+GGG | 0.400779 | 1_3:+10824009 | Msa0103600:CDS |
| TCATTATCTCTCTGGTGGAT+TGG | 0.401572 | 1_3:+10823377 | Msa0103600:CDS |
| CCAAAGAAAGGAGCACTTGC+TGG | 0.403446 | 1_3:+10823875 | Msa0103600:CDS |
| TTAGTCGTGAAAATTTGAAT+AGG | 0.411933 | 1_3:-10824272 | None:intergenic |
| CCTTAGTTGGGTTTGTGGTG+GGG | 0.413230 | 1_3:+10823909 | Msa0103600:CDS |
| GGCTAACATCCTTGCTGGTG+GGG | 0.419242 | 1_3:+10823931 | Msa0103600:CDS |
| AACCTTAGTTGGGTTTGTGG+TGG | 0.423963 | 1_3:+10823907 | Msa0103600:CDS |
| ATCAGGCTGAGTGGCCTCTC+GGG | 0.435444 | 1_3:-10822853 | None:intergenic |
| GCTAAGTGGAGATGCCTTAG+TGG | 0.435457 | 1_3:+10823164 | Msa0103600:CDS |
| GCAGGCCCAAAAGATCTTGC+AGG | 0.436765 | 1_3:-10823977 | None:intergenic |
| GATCATTGGGTTTATTGGGT+TGG | 0.446033 | 1_3:+10824022 | Msa0103600:CDS |
| GTTGGACCACTTATTGGTGG+TGG | 0.458421 | 1_3:+10824040 | Msa0103600:CDS |
| CTTCTTCATTATCTCTCTGG+TGG | 0.466813 | 1_3:+10823372 | Msa0103600:CDS |
| CATACACTTGCAAGTGGAGT+AGG | 0.467366 | 1_3:+10823776 | Msa0103600:CDS |
| ACCATGGCCAAAATTGCATT+AGG | 0.470021 | 1_3:+10822825 | Msa0103600:exon |
| ACTTTGGGCCTCCTTGTTGG+AGG | 0.475351 | 1_3:+10823279 | Msa0103600:CDS |
| AATCAGGCTGAGTGGCCTCT+CGG | 0.482608 | 1_3:-10822854 | None:intergenic |
| GTTGGTTCTGCAATGACTGC+TGG | 0.491784 | 1_3:+10822933 | Msa0103600:CDS |
| AAGTCACGGCGGGATTCAAA+TGG | 0.491922 | 1_3:-10823260 | None:intergenic |
| GTACACTCAAGGAGTAGTTT+GGG | 0.493061 | 1_3:+10823799 | Msa0103600:CDS |
| CAGCTACAGATGCTATCAAT+TGG | 0.495298 | 1_3:-10823341 | None:intergenic |
| TGGGTTGGACCACTTATTGG+TGG | 0.496312 | 1_3:+10824037 | Msa0103600:CDS |
| ACCACAAACCCAACTAAGGT+TGG | 0.497042 | 1_3:-10823905 | None:intergenic |
| GGCTATTGCACATGCTCTTG+TGG | 0.499860 | 1_3:+10823200 | Msa0103600:CDS |
| ATTAGAGCTTGAATGCAATC+AGG | 0.503619 | 1_3:-10822870 | None:intergenic |
| CCACAAACCCAACTAAGGTT+GGG | 0.515362 | 1_3:-10823904 | None:intergenic |
| CCCCACCACAAACCCAACTA+AGG | 0.515431 | 1_3:-10823909 | None:intergenic |
| TCCTTTCTTTGGATCAACCA+TGG | 0.517654 | 1_3:-10823864 | None:intergenic |
| ATTTCAATAGATAAGCTAAG+TGG | 0.542575 | 1_3:+10823150 | Msa0103600:intron |
| AACAAGGAGGCCCAAAGTCA+CGG | 0.547124 | 1_3:-10823274 | None:intergenic |
| ACCATGGTTGATCCAAAGAA+AGG | 0.549142 | 1_3:+10823863 | Msa0103600:CDS |
| GCAAGTCCACCACCAATAAG+TGG | 0.551655 | 1_3:-10824046 | None:intergenic |
| CAATTTCCACTAACCAAAGC+AGG | 0.552637 | 1_3:-10823995 | None:intergenic |
| ACCAGCAAAGACAAAGAGAA+AGG | 0.561490 | 1_3:-10822910 | None:intergenic |
| CCACTTGCAAGTGTATGAGC+TGG | 0.565802 | 1_3:-10823770 | None:intergenic |
| AGGAGGCCCAAAGTCACGGC+GGG | 0.567970 | 1_3:-10823270 | None:intergenic |
| CCAGCTCATACACTTGCAAG+TGG | 0.572996 | 1_3:+10823770 | Msa0103600:CDS |
| CTTTCTTCATCTACAACTAG+AGG | 0.584705 | 1_3:-10824112 | None:intergenic |
| CTAAGTGGAGATGCCTTAGT+GGG | 0.595922 | 1_3:+10823165 | Msa0103600:CDS |
| GGCGGGATTCAAATGGCCAC+CGG | 0.596177 | 1_3:-10823253 | None:intergenic |
| ATACACTTGCAAGTGGAGTA+GGG | 0.603588 | 1_3:+10823777 | Msa0103600:CDS |
| TCTTGCAGGGTTCATTGAAG+CGG | 0.607315 | 1_3:-10823963 | None:intergenic |
| GTTCACTGTGTATGCAACCA+TGG | 0.609878 | 1_3:+10823847 | Msa0103600:CDS |
| TAGTGATGTGGCCTCCAACA+AGG | 0.618519 | 1_3:-10823290 | None:intergenic |
| CAGGCCCAAAAGATCTTGCA+GGG | 0.619708 | 1_3:-10823976 | None:intergenic |
| ACCCAACTAAGGTTGGGCCA+AGG | 0.626848 | 1_3:-10823898 | None:intergenic |
| TATTGCACATGCTCTTGTGG+TGG | 0.628052 | 1_3:+10823203 | Msa0103600:CDS |
| TCCGCCGCTCATATTTCCGG+TGG | 0.641948 | 1_3:+10823237 | Msa0103600:CDS |
| TTGAATGCAATCAGGCTGAG+TGG | 0.647396 | 1_3:-10822862 | None:intergenic |
| AGCAAAGACAAAGAGAAAGG+TGG | 0.654285 | 1_3:-10822907 | None:intergenic |
| ACATTGCAAATCATAAACCA+TGG | 0.668371 | 1_3:+10822809 | Msa0103600:exon |
| AGTGGAGTAGGGTACACTCA+AGG | 0.668556 | 1_3:+10823788 | Msa0103600:CDS |
| GCCACCGGAAATATGAGCGG+CGG | 0.678011 | 1_3:-10823238 | None:intergenic |
| TCGAACGAACGATAGTGATG+TGG | 0.680663 | 1_3:-10823302 | None:intergenic |
| TGCATTAGGAACAACCCGAG+AGG | 0.700665 | 1_3:+10822839 | Msa0103600:CDS |
| AAGGAGGCCCAAAGTCACGG+CGG | 0.714164 | 1_3:-10823271 | None:intergenic |
| TGATGTGGCCTCCAACAAGG+AGG | 0.716697 | 1_3:-10823287 | None:intergenic |
| ATGGCCACCGGAAATATGAG+CGG | 0.716960 | 1_3:-10823241 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAAATTTAATTTAATT+TGG | - | chr1_3:10823576-10823595 | None:intergenic | 0.0% |
| !!! | ATAATAAATTTAATTTAATT+TGG | - | chr1_3:10823576-10823595 | None:intergenic | 0.0% |
| !!! | TATTTTTCAATTTTATTGTA+TGG | - | chr1_3:10823623-10823642 | None:intergenic | 10.0% |
| !!! | TATTTTTCAATTTTATTGTA+TGG | - | chr1_3:10823623-10823642 | None:intergenic | 10.0% |
| !! | AAATTACATTGAAAATTGAA+TGG | - | chr1_3:10823076-10823095 | None:intergenic | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | + | chr1_3:10823468-10823487 | Msa0103600:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | + | chr1_3:10823469-10823488 | Msa0103600:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_3:10823532-10823551 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_3:10823530-10823549 | Msa0103600:intron | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_3:10823654-10823673 | Msa0103600:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+AGG | - | chr1_3:10824228-10824247 | None:intergenic | 15.0% |
| !! | AAATTACATTGAAAATTGAA+TGG | - | chr1_3:10823076-10823095 | None:intergenic | 15.0% |
| !!! | ATTTTTCAGGTAAAAAAATT+TGG | + | chr1_3:10823468-10823487 | Msa0103600:intron | 15.0% |
| !!! | TTTTTCAGGTAAAAAAATTT+GGG | + | chr1_3:10823469-10823488 | Msa0103600:intron | 15.0% |
| !!! | CTTTTAAAATCAAATTGTTT+TGG | - | chr1_3:10823532-10823551 | None:intergenic | 15.0% |
| !!! | CAAAACAATTTGATTTTAAA+AGG | + | chr1_3:10823530-10823549 | Msa0103600:intron | 15.0% |
| !!! | AAATATTCTTGCTTTTTAAA+GGG | + | chr1_3:10823654-10823673 | Msa0103600:intron | 15.0% |
| !!! | TATATTTTTATTTATCTACC+AGG | - | chr1_3:10824228-10824247 | None:intergenic | 15.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_3:10822735-10822754 | Msa0103600:five_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAT+GGG | - | chr1_3:10823053-10823072 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | - | chr1_3:10823142-10823161 | None:intergenic | 20.0% |
| !!! | CTAAAAAAAGTGGTAATTTT+TGG | - | chr1_3:10823435-10823454 | None:intergenic | 20.0% |
| !!! | CAAAAATTACCACTTTTTTT+AGG | + | chr1_3:10823433-10823452 | Msa0103600:intron | 20.0% |
| !! | TGTAATAAACGTAATATTTG+AGG | + | chr1_3:10823505-10823524 | Msa0103600:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_3:10823533-10823552 | Msa0103600:intron | 20.0% |
| !!! | TCAATTTTATTGTATGGATA+AGG | - | chr1_3:10823617-10823636 | None:intergenic | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_3:10823653-10823672 | Msa0103600:intron | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | - | chr1_3:10823693-10823712 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | + | chr1_3:10823691-10823710 | Msa0103600:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_3:10824133-10824152 | Msa0103600:exon | 20.0% |
| !!! | CTTAATTTGCCTTTATAAAT+TGG | + | chr1_3:10822735-10822754 | Msa0103600:five_prime_UTR | 20.0% |
| !! | CATTTCAATTCAAATAACAT+GGG | - | chr1_3:10823053-10823072 | None:intergenic | 20.0% |
| !! | ATCTATTGAAATAAATTCCA+AGG | - | chr1_3:10823142-10823161 | None:intergenic | 20.0% |
| !!! | CTAAAAAAAGTGGTAATTTT+TGG | - | chr1_3:10823435-10823454 | None:intergenic | 20.0% |
| !!! | CAAAAATTACCACTTTTTTT+AGG | + | chr1_3:10823433-10823452 | Msa0103600:intron | 20.0% |
| !! | TGTAATAAACGTAATATTTG+AGG | + | chr1_3:10823505-10823524 | Msa0103600:intron | 20.0% |
| !!! | AACAATTTGATTTTAAAAGG+AGG | + | chr1_3:10823533-10823552 | Msa0103600:intron | 20.0% |
| !!! | TCAATTTTATTGTATGGATA+AGG | - | chr1_3:10823617-10823636 | None:intergenic | 20.0% |
| !!! | CAAATATTCTTGCTTTTTAA+AGG | + | chr1_3:10823653-10823672 | Msa0103600:intron | 20.0% |
| !! | CAACAATAAAAGACAAAAAA+AGG | - | chr1_3:10823693-10823712 | None:intergenic | 20.0% |
| !!! | CTTTTTTTGTCTTTTATTGT+TGG | + | chr1_3:10823691-10823710 | Msa0103600:intron | 20.0% |
| !! | AGCTACTAAAAATTAAGATT+AGG | + | chr1_3:10824133-10824152 | Msa0103600:exon | 20.0% |
| ! | ATAACATGGGATGAAATTAA+TGG | - | chr1_3:10823040-10823059 | None:intergenic | 25.0% |
| ! | GCATTTCAATTCAAATAACA+TGG | - | chr1_3:10823054-10823073 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | + | chr1_3:10823101-10823120 | Msa0103600:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_3:10823150-10823169 | Msa0103600:intron | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | - | chr1_3:10823445-10823464 | None:intergenic | 25.0% |
| !!! | GTTACAAATCATCATTTTTC+AGG | + | chr1_3:10823455-10823474 | Msa0103600:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_3:10823546-10823565 | Msa0103600:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | + | chr1_3:10824144-10824163 | Msa0103600:three_prime_UTR | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | + | chr1_3:10824145-10824164 | Msa0103600:three_prime_UTR | 25.0% |
| ! | ATAACATGGGATGAAATTAA+TGG | - | chr1_3:10823040-10823059 | None:intergenic | 25.0% |
| ! | GCATTTCAATTCAAATAACA+TGG | - | chr1_3:10823054-10823073 | None:intergenic | 25.0% |
| ! | AATGTTCATAATTCAAACTC+TGG | + | chr1_3:10823101-10823120 | Msa0103600:intron | 25.0% |
| ! | ATTTCAATAGATAAGCTAAG+TGG | + | chr1_3:10823150-10823169 | Msa0103600:intron | 25.0% |
| ! | GATTTGTAACCTAAAAAAAG+TGG | - | chr1_3:10823445-10823464 | None:intergenic | 25.0% |
| !!! | GTTACAAATCATCATTTTTC+AGG | + | chr1_3:10823455-10823474 | Msa0103600:intron | 25.0% |
| !! | TAAAAGGAGGAAACTATTTT+TGG | + | chr1_3:10823546-10823565 | Msa0103600:intron | 25.0% |
| !! | ATTAAGATTAGGTTTTTCCT+TGG | + | chr1_3:10824144-10824163 | Msa0103600:three_prime_UTR | 25.0% |
| !! | TTAAGATTAGGTTTTTCCTT+GGG | + | chr1_3:10824145-10824164 | Msa0103600:three_prime_UTR | 25.0% |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_3:10822747-10822766 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGA+AGG | + | chr1_3:10822772-10822791 | Msa0103600:five_prime_UTR | 30.0% |
| ACATTGCAAATCATAAACCA+TGG | + | chr1_3:10822809-10822828 | Msa0103600:exon | 30.0% | |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_3:10823329-10823348 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_3:10823369-10823388 | Msa0103600:CDS | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | - | chr1_3:10824164-10824183 | None:intergenic | 30.0% |
| AAGAAGCTGCCAATTTATAA+AGG | - | chr1_3:10822747-10822766 | None:intergenic | 30.0% | |
| !! | ATTTTTCAGCTATTGAGTGA+AGG | + | chr1_3:10822772-10822791 | Msa0103600:five_prime_UTR | 30.0% |
| ACATTGCAAATCATAAACCA+TGG | + | chr1_3:10822809-10822828 | Msa0103600:exon | 30.0% | |
| TCAATTGGTCAATCCAATAT+AGG | - | chr1_3:10823329-10823348 | None:intergenic | 30.0% | |
| TATCTTCTTCATTATCTCTC+TGG | + | chr1_3:10823369-10823388 | Msa0103600:CDS | 30.0% | |
| ! | AATTTTATGCAAAGTTCCCA+AGG | - | chr1_3:10824164-10824183 | None:intergenic | 30.0% |
| ! | GGTTGTTCCTAATGCAATTT+TGG | - | chr1_3:10822835-10822854 | None:intergenic | 35.0% |
| ATTAGAGCTTGAATGCAATC+AGG | - | chr1_3:10822873-10822892 | None:intergenic | 35.0% | |
| ! | TGGGATGAAATTAATGGATG+AGG | - | chr1_3:10823034-10823053 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_3:10823181-10823200 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_3:10823179-10823198 | Msa0103600:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_3:10824009-10824028 | Msa0103600:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_3:10824018-10824037 | Msa0103600:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_3:10824115-10824134 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+TGG | + | chr1_3:10824207-10824226 | Msa0103600:three_prime_UTR | 35.0% |
| ! | GGTTGTTCCTAATGCAATTT+TGG | - | chr1_3:10822835-10822854 | None:intergenic | 35.0% |
| ATTAGAGCTTGAATGCAATC+AGG | - | chr1_3:10822873-10822892 | None:intergenic | 35.0% | |
| ! | TGGGATGAAATTAATGGATG+AGG | - | chr1_3:10823034-10823053 | None:intergenic | 35.0% |
| CACAAAAAACAATCCCACTA+AGG | - | chr1_3:10823181-10823200 | None:intergenic | 35.0% | |
| !!! | CTTAGTGGGATTGTTTTTTG+TGG | + | chr1_3:10823179-10823198 | Msa0103600:CDS | 35.0% |
| TGGAAATTGGACTGATCATT+GGG | + | chr1_3:10824009-10824028 | Msa0103600:CDS | 35.0% | |
| GACTGATCATTGGGTTTATT+GGG | + | chr1_3:10824018-10824037 | Msa0103600:CDS | 35.0% | |
| CTTTCTTCATCTACAACTAG+AGG | - | chr1_3:10824115-10824134 | None:intergenic | 35.0% | |
| !!! | AAGTGCTTTATTTTTGTGCC+TGG | + | chr1_3:10824207-10824226 | Msa0103600:three_prime_UTR | 35.0% |
| ACCATGGCCAAAATTGCATT+AGG | + | chr1_3:10822825-10822844 | Msa0103600:exon | 40.0% | |
| !! | TCCTAATGCAATTTTGGCCA+TGG | - | chr1_3:10822829-10822848 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_3:10822910-10822929 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_3:10822909-10822928 | Msa0103600:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_3:10822913-10822932 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_3:10823313-10823332 | Msa0103600:CDS | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | - | chr1_3:10823344-10823363 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_3:10823372-10823391 | Msa0103600:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_3:10823377-10823396 | Msa0103600:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_3:10823777-10823796 | Msa0103600:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_3:10823799-10823818 | Msa0103600:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_3:10823863-10823882 | Msa0103600:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_3:10823867-10823886 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_3:10823971-10823990 | Msa0103600:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_3:10823972-10823991 | Msa0103600:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_3:10823998-10824017 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_3:10823996-10824015 | Msa0103600:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_3:10824008-10824027 | Msa0103600:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_3:10824017-10824036 | Msa0103600:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_3:10824022-10824041 | Msa0103600:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_3:10824034-10824053 | Msa0103600:CDS | 40.0% |
| ACCATGGCCAAAATTGCATT+AGG | + | chr1_3:10822825-10822844 | Msa0103600:exon | 40.0% | |
| !! | TCCTAATGCAATTTTGGCCA+TGG | - | chr1_3:10822829-10822848 | None:intergenic | 40.0% |
| AGCAAAGACAAAGAGAAAGG+TGG | - | chr1_3:10822910-10822929 | None:intergenic | 40.0% | |
| ACCTTTCTCTTTGTCTTTGC+TGG | + | chr1_3:10822909-10822928 | Msa0103600:CDS | 40.0% | |
| ACCAGCAAAGACAAAGAGAA+AGG | - | chr1_3:10822913-10822932 | None:intergenic | 40.0% | |
| TCGTTCGTTCGATCCTATAT+TGG | + | chr1_3:10823313-10823332 | Msa0103600:CDS | 40.0% | |
| CAGCTACAGATGCTATCAAT+TGG | - | chr1_3:10823344-10823363 | None:intergenic | 40.0% | |
| CTTCTTCATTATCTCTCTGG+TGG | + | chr1_3:10823372-10823391 | Msa0103600:CDS | 40.0% | |
| ! | TCATTATCTCTCTGGTGGAT+TGG | + | chr1_3:10823377-10823396 | Msa0103600:CDS | 40.0% |
| ATACACTTGCAAGTGGAGTA+GGG | + | chr1_3:10823777-10823796 | Msa0103600:CDS | 40.0% | |
| GTACACTCAAGGAGTAGTTT+GGG | + | chr1_3:10823799-10823818 | Msa0103600:CDS | 40.0% | |
| ACCATGGTTGATCCAAAGAA+AGG | + | chr1_3:10823863-10823882 | Msa0103600:CDS | 40.0% | |
| TCCTTTCTTTGGATCAACCA+TGG | - | chr1_3:10823867-10823886 | None:intergenic | 40.0% | |
| ! | ATGAACCCTGCAAGATCTTT+TGG | + | chr1_3:10823971-10823990 | Msa0103600:CDS | 40.0% |
| ! | TGAACCCTGCAAGATCTTTT+GGG | + | chr1_3:10823972-10823991 | Msa0103600:CDS | 40.0% |
| CAATTTCCACTAACCAAAGC+AGG | - | chr1_3:10823998-10824017 | None:intergenic | 40.0% | |
| CTGCTTTGGTTAGTGGAAAT+TGG | + | chr1_3:10823996-10824015 | Msa0103600:CDS | 40.0% | |
| GTGGAAATTGGACTGATCAT+TGG | + | chr1_3:10824008-10824027 | Msa0103600:CDS | 40.0% | |
| GGACTGATCATTGGGTTTAT+TGG | + | chr1_3:10824017-10824036 | Msa0103600:CDS | 40.0% | |
| GATCATTGGGTTTATTGGGT+TGG | + | chr1_3:10824022-10824041 | Msa0103600:CDS | 40.0% | |
| !! | TATTGGGTTGGACCACTTAT+TGG | + | chr1_3:10824034-10824053 | Msa0103600:CDS | 40.0% |
| TTGAATGCAATCAGGCTGAG+TGG | - | chr1_3:10822865-10822884 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_3:10822915-10822934 | Msa0103600:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | + | chr1_3:10823122-10823141 | Msa0103600:intron | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_3:10823165-10823184 | Msa0103600:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_3:10823203-10823222 | Msa0103600:CDS | 45.0% | |
| TCGAACGAACGATAGTGATG+TGG | - | chr1_3:10823305-10823324 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_3:10823776-10823795 | Msa0103600:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_3:10823798-10823817 | Msa0103600:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_3:10823847-10823866 | Msa0103600:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_3:10823907-10823926 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_3:10823908-10823927 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_3:10823907-10823926 | Msa0103600:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_3:10823908-10823927 | Msa0103600:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_3:10823966-10823985 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_3:10823982-10824001 | Msa0103600:CDS | 45.0% |
| TTGAATGCAATCAGGCTGAG+TGG | - | chr1_3:10822865-10822884 | None:intergenic | 45.0% | |
| CTCTTTGTCTTTGCTGGTGT+TGG | + | chr1_3:10822915-10822934 | Msa0103600:CDS | 45.0% | |
| GGCTACTAAGACTAACTCCT+TGG | + | chr1_3:10823122-10823141 | Msa0103600:intron | 45.0% | |
| CTAAGTGGAGATGCCTTAGT+GGG | + | chr1_3:10823165-10823184 | Msa0103600:CDS | 45.0% | |
| TATTGCACATGCTCTTGTGG+TGG | + | chr1_3:10823203-10823222 | Msa0103600:CDS | 45.0% | |
| TCGAACGAACGATAGTGATG+TGG | - | chr1_3:10823305-10823324 | None:intergenic | 45.0% | |
| CATACACTTGCAAGTGGAGT+AGG | + | chr1_3:10823776-10823795 | Msa0103600:CDS | 45.0% | |
| GGTACACTCAAGGAGTAGTT+TGG | + | chr1_3:10823798-10823817 | Msa0103600:CDS | 45.0% | |
| GTTCACTGTGTATGCAACCA+TGG | + | chr1_3:10823847-10823866 | Msa0103600:CDS | 45.0% | |
| CCACAAACCCAACTAAGGTT+GGG | - | chr1_3:10823907-10823926 | None:intergenic | 45.0% | |
| ACCACAAACCCAACTAAGGT+TGG | - | chr1_3:10823908-10823927 | None:intergenic | 45.0% | |
| AACCTTAGTTGGGTTTGTGG+TGG | + | chr1_3:10823907-10823926 | Msa0103600:CDS | 45.0% | |
| ACCTTAGTTGGGTTTGTGGT+GGG | + | chr1_3:10823908-10823927 | Msa0103600:CDS | 45.0% | |
| TCTTGCAGGGTTCATTGAAG+CGG | - | chr1_3:10823966-10823985 | None:intergenic | 45.0% | |
| ! | AAGATCTTTTGGGCCTGCTT+TGG | + | chr1_3:10823982-10824001 | Msa0103600:CDS | 45.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_3:10823585-10823604 | Msa0103600:intron | 5.0% |
| !! | AAATTTATTATTATTTATGT+TGG | + | chr1_3:10823585-10823604 | Msa0103600:intron | 5.0% |
| TGCATTAGGAACAACCCGAG+AGG | + | chr1_3:10822839-10822858 | Msa0103600:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | + | chr1_3:10822933-10822952 | Msa0103600:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_3:10823164-10823183 | Msa0103600:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_3:10823200-10823219 | Msa0103600:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_3:10823234-10823253 | Msa0103600:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_3:10823244-10823263 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_3:10823263-10823282 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_3:10823263-10823282 | Msa0103600:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_3:10823264-10823283 | Msa0103600:CDS | 50.0% | |
| AACAAGGAGGCCCAAAGTCA+CGG | - | chr1_3:10823277-10823296 | None:intergenic | 50.0% | |
| TAGTGATGTGGCCTCCAACA+AGG | - | chr1_3:10823293-10823312 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_3:10823773-10823792 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_3:10823770-10823789 | Msa0103600:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_3:10823788-10823807 | Msa0103600:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_3:10823878-10823897 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_3:10823875-10823894 | Msa0103600:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_3:10823904-10823923 | Msa0103600:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_3:10823909-10823928 | Msa0103600:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_3:10823910-10823929 | Msa0103600:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_3:10823979-10823998 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_3:10823989-10824008 | Msa0103600:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_3:10824037-10824056 | Msa0103600:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_3:10824040-10824059 | Msa0103600:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_3:10824049-10824068 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_3:10824049-10824068 | Msa0103600:CDS | 50.0% |
| TGCATTAGGAACAACCCGAG+AGG | + | chr1_3:10822839-10822858 | Msa0103600:CDS | 50.0% | |
| !! | GTTGGTTCTGCAATGACTGC+TGG | + | chr1_3:10822933-10822952 | Msa0103600:CDS | 50.0% |
| GCTAAGTGGAGATGCCTTAG+TGG | + | chr1_3:10823164-10823183 | Msa0103600:CDS | 50.0% | |
| GGCTATTGCACATGCTCTTG+TGG | + | chr1_3:10823200-10823219 | Msa0103600:CDS | 50.0% | |
| ATCTCCGCCGCTCATATTTC+CGG | + | chr1_3:10823234-10823253 | Msa0103600:CDS | 50.0% | |
| ATGGCCACCGGAAATATGAG+CGG | - | chr1_3:10823244-10823263 | None:intergenic | 50.0% | |
| AAGTCACGGCGGGATTCAAA+TGG | - | chr1_3:10823263-10823282 | None:intergenic | 50.0% | |
| TTTGAATCCCGCCGTGACTT+TGG | + | chr1_3:10823263-10823282 | Msa0103600:CDS | 50.0% | |
| TTGAATCCCGCCGTGACTTT+GGG | + | chr1_3:10823264-10823283 | Msa0103600:CDS | 50.0% | |
| AACAAGGAGGCCCAAAGTCA+CGG | - | chr1_3:10823277-10823296 | None:intergenic | 50.0% | |
| TAGTGATGTGGCCTCCAACA+AGG | - | chr1_3:10823293-10823312 | None:intergenic | 50.0% | |
| CCACTTGCAAGTGTATGAGC+TGG | - | chr1_3:10823773-10823792 | None:intergenic | 50.0% | |
| CCAGCTCATACACTTGCAAG+TGG | + | chr1_3:10823770-10823789 | Msa0103600:CDS | 50.0% | |
| AGTGGAGTAGGGTACACTCA+AGG | + | chr1_3:10823788-10823807 | Msa0103600:CDS | 50.0% | |
| CCAGCAAGTGCTCCTTTCTT+TGG | - | chr1_3:10823878-10823897 | None:intergenic | 50.0% | |
| !! | CCAAAGAAAGGAGCACTTGC+TGG | + | chr1_3:10823875-10823894 | Msa0103600:CDS | 50.0% |
| CCCAACCTTAGTTGGGTTTG+TGG | + | chr1_3:10823904-10823923 | Msa0103600:CDS | 50.0% | |
| CCTTAGTTGGGTTTGTGGTG+GGG | + | chr1_3:10823909-10823928 | Msa0103600:CDS | 50.0% | |
| CTTAGTTGGGTTTGTGGTGG+GGG | + | chr1_3:10823910-10823929 | Msa0103600:CDS | 50.0% | |
| CAGGCCCAAAAGATCTTGCA+GGG | - | chr1_3:10823979-10823998 | None:intergenic | 50.0% | |
| TTTGGGCCTGCTTTGGTTAG+TGG | + | chr1_3:10823989-10824008 | Msa0103600:CDS | 50.0% | |
| ! | TGGGTTGGACCACTTATTGG+TGG | + | chr1_3:10824037-10824056 | Msa0103600:CDS | 50.0% |
| GTTGGACCACTTATTGGTGG+TGG | + | chr1_3:10824040-10824059 | Msa0103600:CDS | 50.0% | |
| GCAAGTCCACCACCAATAAG+TGG | - | chr1_3:10824049-10824068 | None:intergenic | 50.0% | |
| !! | CTTATTGGTGGTGGACTTGC+TGG | + | chr1_3:10824049-10824068 | Msa0103600:CDS | 50.0% |
| AATCAGGCTGAGTGGCCTCT+CGG | - | chr1_3:10822857-10822876 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+TGG | + | chr1_3:10823276-10823295 | Msa0103600:CDS | 55.0% | |
| ACTTTGGGCCTCCTTGTTGG+AGG | + | chr1_3:10823279-10823298 | Msa0103600:CDS | 55.0% | |
| TGATGTGGCCTCCAACAAGG+AGG | - | chr1_3:10823290-10823309 | None:intergenic | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_3:10823881-10823900 | Msa0103600:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_3:10823897-10823916 | Msa0103600:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_3:10823901-10823920 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_3:10823912-10823931 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_3:10823930-10823949 | Msa0103600:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_3:10823931-10823950 | Msa0103600:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_3:10823940-10823959 | Msa0103600:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_3:10823980-10823999 | None:intergenic | 55.0% | |
| AATCAGGCTGAGTGGCCTCT+CGG | - | chr1_3:10822857-10822876 | None:intergenic | 55.0% | |
| GTGACTTTGGGCCTCCTTGT+TGG | + | chr1_3:10823276-10823295 | Msa0103600:CDS | 55.0% | |
| ACTTTGGGCCTCCTTGTTGG+AGG | + | chr1_3:10823279-10823298 | Msa0103600:CDS | 55.0% | |
| TGATGTGGCCTCCAACAAGG+AGG | - | chr1_3:10823290-10823309 | None:intergenic | 55.0% | |
| !! | AAAGGAGCACTTGCTGGCCT+TGG | + | chr1_3:10823881-10823900 | Msa0103600:CDS | 55.0% |
| GCCTTGGCCCAACCTTAGTT+GGG | + | chr1_3:10823897-10823916 | Msa0103600:CDS | 55.0% | |
| ACCCAACTAAGGTTGGGCCA+AGG | - | chr1_3:10823901-10823920 | None:intergenic | 55.0% | |
| CCCCACCACAAACCCAACTA+AGG | - | chr1_3:10823912-10823931 | None:intergenic | 55.0% | |
| GGGCTAACATCCTTGCTGGT+GGG | + | chr1_3:10823930-10823949 | Msa0103600:CDS | 55.0% | |
| GGCTAACATCCTTGCTGGTG+GGG | + | chr1_3:10823931-10823950 | Msa0103600:CDS | 55.0% | |
| ! | CCTTGCTGGTGGGGCTTTTT+CGG | + | chr1_3:10823940-10823959 | Msa0103600:CDS | 55.0% |
| GCAGGCCCAAAAGATCTTGC+AGG | - | chr1_3:10823980-10823999 | None:intergenic | 55.0% | |
| ATCAGGCTGAGTGGCCTCTC+GGG | - | chr1_3:10822856-10822875 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_3:10823237-10823256 | Msa0103600:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_3:10823241-10823260 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_3:10823256-10823275 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_3:10823274-10823293 | None:intergenic | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_3:10823896-10823915 | Msa0103600:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_3:10823926-10823945 | Msa0103600:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_3:10823929-10823948 | Msa0103600:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_3:10823943-10823962 | None:intergenic | 60.0% | |
| ATCAGGCTGAGTGGCCTCTC+GGG | - | chr1_3:10822856-10822875 | None:intergenic | 60.0% | |
| TCCGCCGCTCATATTTCCGG+TGG | + | chr1_3:10823237-10823256 | Msa0103600:CDS | 60.0% | |
| GCCACCGGAAATATGAGCGG+CGG | - | chr1_3:10823241-10823260 | None:intergenic | 60.0% | |
| GGCGGGATTCAAATGGCCAC+CGG | - | chr1_3:10823256-10823275 | None:intergenic | 60.0% | |
| AAGGAGGCCCAAAGTCACGG+CGG | - | chr1_3:10823274-10823293 | None:intergenic | 60.0% | |
| GGCCTTGGCCCAACCTTAGT+TGG | + | chr1_3:10823896-10823915 | Msa0103600:CDS | 60.0% | |
| GTGGGGGCTAACATCCTTGC+TGG | + | chr1_3:10823926-10823945 | Msa0103600:CDS | 60.0% | |
| GGGGCTAACATCCTTGCTGG+TGG | + | chr1_3:10823929-10823948 | Msa0103600:CDS | 60.0% | |
| CCGAAAAAGCCCCACCAGCA+AGG | - | chr1_3:10823943-10823962 | None:intergenic | 60.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_3:10823273-10823292 | None:intergenic | 65.0% | |
| AGGAGGCCCAAAGTCACGGC+GGG | - | chr1_3:10823273-10823292 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10822699 | 10824286 | 10822699 | ID=Msa0103600;Name=Msa0103600 |
| chr1_3 | mRNA | 10822699 | 10824286 | 10822699 | ID=Msa0103600-mRNA-1;Parent=Msa0103600;Name=Msa0103600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=129|1|1|1|1|1|3|145|247 |
| chr1_3 | exon | 10822699 | 10822954 | 10822699 | ID=Msa0103600-mRNA-1:exon:4472;Parent=Msa0103600-mRNA-1 |
| chr1_3 | exon | 10823160 | 10823398 | 10823160 | ID=Msa0103600-mRNA-1:exon:4473;Parent=Msa0103600-mRNA-1 |
| chr1_3 | exon | 10823764 | 10824286 | 10823764 | ID=Msa0103600-mRNA-1:exon:4474;Parent=Msa0103600-mRNA-1 |
| chr1_3 | five_prime_UTR | 10822699 | 10822827 | 10822699 | ID=Msa0103600-mRNA-1:five_prime_utr;Parent=Msa0103600-mRNA-1 |
| chr1_3 | CDS | 10822828 | 10822954 | 10822828 | ID=Msa0103600-mRNA-1:cds;Parent=Msa0103600-mRNA-1 |
| chr1_3 | CDS | 10823160 | 10823398 | 10823160 | ID=Msa0103600-mRNA-1:cds;Parent=Msa0103600-mRNA-1 |
| chr1_3 | CDS | 10823764 | 10824141 | 10823764 | ID=Msa0103600-mRNA-1:cds;Parent=Msa0103600-mRNA-1 |
| chr1_3 | three_prime_UTR | 10824142 | 10824286 | 10824142 | ID=Msa0103600-mRNA-1:three_prime_utr;Parent=Msa0103600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
