Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059770 | Msa0353690 | 0.815445 | 9.212693e-52 | -8.615850e-47 |
| Msa0059770 | Msa0360900 | 0.810322 | 1.220775e-50 | -8.615850e-47 |
| Msa0059770 | Msa0639460 | 0.806641 | 7.454145e-50 | -8.615850e-47 |
| Msa0059770 | Msa0964180 | 0.806577 | 7.686998e-50 | -8.615850e-47 |
| Msa0059770 | Msa0965750 | 0.808076 | 3.698378e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGCTTCTTCATGTTATT+TGG | 0.211543 | 1_2:-17185960 | Msa0059770:CDS |
| TGCGAGCTTAATTCATAAAT+AGG | 0.264915 | 1_2:-17185026 | Msa0059770:three_prime_UTR |
| TGTATTAAGTTAATTCTATA+AGG | 0.273788 | 1_2:-17185002 | Msa0059770:three_prime_UTR |
| TTCAGGTGAAAACTTCTCTT+TGG | 0.279046 | 1_2:+17185906 | None:intergenic |
| CCTCTTTGGAGCTGATATTC+AGG | 0.282410 | 1_2:+17185889 | None:intergenic |
| CTTCCTCTTCAGACCTTTCA+AGG | 0.308071 | 1_2:-17185676 | Msa0059770:intron |
| AGCATCTCATCTTAAGGAAC+TGG | 0.384355 | 1_2:+17185066 | None:intergenic |
| AATTTAAGCATCTCATCTTA+AGG | 0.403599 | 1_2:+17185060 | None:intergenic |
| TTTGTTAAGGTGAGAGGCAG+TGG | 0.468720 | 1_2:-17185180 | Msa0059770:CDS |
| TGAAAGGTCTGAAGAGGAAG+TGG | 0.504946 | 1_2:+17185679 | None:intergenic |
| TCTTTGGACGGTGATGGTGA+TGG | 0.514274 | 1_2:+17185922 | None:intergenic |
| ATTCTATAAGGATAAGAGCT+TGG | 0.517101 | 1_2:-17184990 | Msa0059770:three_prime_UTR |
| GCAGACGAGTGAATTTGTTA+AGG | 0.523294 | 1_2:-17185193 | Msa0059770:intron |
| GGTGAAAACTTCTCTTTGGA+CGG | 0.539962 | 1_2:+17185910 | None:intergenic |
| CGTTGAATCATATTTGAAGC+CGG | 0.540427 | 1_2:+17185113 | None:intergenic |
| AACTTCTCTTTGGACGGTGA+TGG | 0.541544 | 1_2:+17185916 | None:intergenic |
| ATCATATTAGAATAATGGTT+AGG | 0.546187 | 1_2:-17187846 | None:intergenic |
| GGTATAGGAAGTACCTTGAA+AGG | 0.569267 | 1_2:+17185663 | None:intergenic |
| GCATCCGCTGAAGTGTGTAC+CGG | 0.576918 | 1_2:-17185132 | Msa0059770:CDS |
| AGTGAATTTGTTAAGGTGAG+AGG | 0.578607 | 1_2:-17185186 | Msa0059770:CDS |
| TACAAACTAACAAAGCTACA+TGG | 0.599307 | 1_2:+17184965 | None:intergenic |
| GTACCTTGAAAGGTCTGAAG+AGG | 0.600039 | 1_2:+17185673 | None:intergenic |
| CCTGAATATCAGCTCCAAAG+AGG | 0.612434 | 1_2:-17185889 | Msa0059770:intron |
| ACACTTCAGCGGATGCTGCA+AGG | 0.614659 | 1_2:+17185139 | None:intergenic |
| GAAGCCGGTACACACTTCAG+CGG | 0.688337 | 1_2:+17185128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTAAAGTTTTATTTAA+AGG | + | chr1_2:17185318-17185337 | None:intergenic | 10.0% |
| !!! | GTTTTATTTCTTATATATAT+AGG | - | chr1_2:17185474-17185493 | Msa0059770:intron | 10.0% |
| !! | TTTAATTAGTAAATTATGAG+CGG | - | chr1_2:17184946-17184965 | Msa0059770:three_prime_UTR | 15.0% |
| !! | ATAAGATTCATATATCATAT+AGG | - | chr1_2:17185563-17185582 | Msa0059770:intron | 15.0% |
| !! | ATAAATTAGTTATACTCTTA+AGG | + | chr1_2:17185950-17185969 | None:intergenic | 15.0% |
| !! | ATTCATTAAAAATTTGATGA+TGG | + | chr1_2:17186280-17186299 | None:intergenic | 15.0% |
| !! | AAATTTCAAAAGAATAAGAA+TGG | - | chr1_2:17186650-17186669 | Msa0059770:intron | 15.0% |
| !!! | TAATTAGCATTATTTTTTGT+GGG | - | chr1_2:17187096-17187115 | Msa0059770:intron | 15.0% |
| !! | TGTATTAAGTTAATTCTATA+AGG | - | chr1_2:17187717-17187736 | Msa0059770:intron | 15.0% |
| !! | TCTCTTTCTTGAATATAATT+AGG | - | chr1_2:17185202-17185221 | Msa0059770:intron | 20.0% |
| !! | TCTTATATATATAGGATTTC+AGG | - | chr1_2:17185482-17185501 | Msa0059770:intron | 20.0% |
| !!! | TTTATTAGTTGATATATGTG+AGG | - | chr1_2:17185658-17185677 | Msa0059770:intron | 20.0% |
| !!! | AATTATGTTACTTGTCATAA+TGG | - | chr1_2:17185727-17185746 | Msa0059770:CDS | 20.0% |
| !! | TTAAAGTTATGAAAGTCATA+AGG | - | chr1_2:17185782-17185801 | Msa0059770:intron | 20.0% |
| !! | TAAAGTTATGAAAGTCATAA+GGG | - | chr1_2:17185783-17185802 | Msa0059770:intron | 20.0% |
| !! | ATAAAGTTATACATACTACT+AGG | - | chr1_2:17185829-17185848 | Msa0059770:intron | 20.0% |
| !! | TCCAAAACATTACTTATAAT+TGG | - | chr1_2:17186432-17186451 | Msa0059770:intron | 20.0% |
| !!! | ACCAATTATAAGTAATGTTT+TGG | + | chr1_2:17186436-17186455 | None:intergenic | 20.0% |
| !! | GAAATTGAAATTATTATTGC+AGG | - | chr1_2:17186592-17186611 | Msa0059770:intron | 20.0% |
| !!! | TTGTATTTTAAATACCTCTT+TGG | + | chr1_2:17186847-17186866 | None:intergenic | 20.0% |
| !!! | GAGGTATTTAAAATACAAAT+TGG | - | chr1_2:17186849-17186868 | Msa0059770:intron | 20.0% |
| !!! | CTAATTAGCATTATTTTTTG+TGG | - | chr1_2:17187095-17187114 | Msa0059770:intron | 20.0% |
| !!! | AATTAGCATTATTTTTTGTG+GGG | - | chr1_2:17187097-17187116 | Msa0059770:intron | 20.0% |
| !! | AAAAAGCTAAAAAGAGAATT+AGG | + | chr1_2:17187242-17187261 | None:intergenic | 20.0% |
| !!! | GCTTTTTAATAATTGTGATT+TGG | - | chr1_2:17187255-17187274 | Msa0059770:intron | 20.0% |
| !!! | TGCATAAGTTTTATGACTTT+AGG | - | chr1_2:17185429-17185448 | Msa0059770:intron | 25.0% |
| !!! | GTTTTATGACTTTAGGAATA+TGG | - | chr1_2:17185436-17185455 | Msa0059770:intron | 25.0% |
| ! | ATTTCCTGTACATAGTAAAT+AGG | - | chr1_2:17185604-17185623 | Msa0059770:intron | 25.0% |
| ! | TCAACTAATAAAATAGTTCC+AGG | + | chr1_2:17185650-17185669 | None:intergenic | 25.0% |
| ! | TGAGGTTATGAATATTTATG+TGG | - | chr1_2:17185676-17185695 | Msa0059770:intron | 25.0% |
| ! | GTTATGAATATTTATGTGGA+GGG | - | chr1_2:17185680-17185699 | Msa0059770:CDS | 25.0% |
| ! | TACTCTATTTCAAATAGGTT+AGG | - | chr1_2:17185703-17185722 | Msa0059770:CDS | 25.0% |
| ! | CAAGAAACAAAACAACATAT+CGG | + | chr1_2:17185756-17185775 | None:intergenic | 25.0% |
| !! | CATGATAGGAATTAAGTTTT+AGG | - | chr1_2:17185902-17185921 | Msa0059770:CDS | 25.0% |
| ! | ACATGAAAAAATGCATTACA+GGG | + | chr1_2:17186078-17186097 | None:intergenic | 25.0% |
| ! | AACATGAAAAAATGCATTAC+AGG | + | chr1_2:17186079-17186098 | None:intergenic | 25.0% |
| !! | TTTATTGCTTTCTTTTTGTG+TGG | - | chr1_2:17186489-17186508 | Msa0059770:intron | 25.0% |
| ! | TTCCATTATACAACTAATGA+AGG | - | chr1_2:17186706-17186725 | Msa0059770:intron | 25.0% |
| !!! | CTTAGTAGTTTTATTCTTCA+AGG | + | chr1_2:17186982-17187001 | None:intergenic | 25.0% |
| ! | AATAATGCTAATTAGTACCT+TGG | + | chr1_2:17187090-17187109 | None:intergenic | 25.0% |
| !!! | ATCGCAAATACATATTTTAG+TGG | + | chr1_2:17187173-17187192 | None:intergenic | 25.0% |
| ! | GAGAATTAGGAAAAATAACT+TGG | + | chr1_2:17187229-17187248 | None:intergenic | 25.0% |
| !! | AACATACTTTTACATGTCAT+AGG | - | chr1_2:17187371-17187390 | Msa0059770:intron | 25.0% |
| !! | TTGTTACTGAGATTTCTTTT+AGG | - | chr1_2:17187401-17187420 | Msa0059770:intron | 25.0% |
| ! | AATTTAAGCATCTCATCTTA+AGG | + | chr1_2:17187662-17187681 | None:intergenic | 25.0% |
| AGAAAACAAACCACAATAGT+AGG | + | chr1_2:17185092-17185111 | None:intergenic | 30.0% | |
| !! | TTTGTTTTCTTTAGCATGGT+AGG | - | chr1_2:17185102-17185121 | Msa0059770:CDS | 30.0% |
| !! | ACTTATTGTGTTGACTGTTA+TGG | - | chr1_2:17185338-17185357 | Msa0059770:intron | 30.0% |
| !! | CTTTAGGAATATGGCTTTAT+AGG | - | chr1_2:17185445-17185464 | Msa0059770:intron | 30.0% |
| !! | AATATGGCTTTATAGGAATG+TGG | - | chr1_2:17185452-17185471 | Msa0059770:intron | 30.0% |
| TATAGCTAGTATATTCATGC+AGG | + | chr1_2:17185546-17185565 | None:intergenic | 30.0% | |
| ACTACCTATTTACTATGTAC+AGG | + | chr1_2:17185611-17185630 | None:intergenic | 30.0% | |
| GGTTATGAATATTTATGTGG+AGG | - | chr1_2:17185679-17185698 | Msa0059770:CDS | 30.0% | |
| TACTAGGAGAAGAAATTGTA+TGG | - | chr1_2:17185845-17185864 | Msa0059770:intron | 30.0% | |
| ! | TTCGTGTTTTGTATCATGAT+AGG | - | chr1_2:17185888-17185907 | Msa0059770:intron | 30.0% |
| TGATTAATACGCTATTTGCA+TGG | - | chr1_2:17186000-17186019 | Msa0059770:intron | 30.0% | |
| GATTAATACGCTATTTGCAT+GGG | - | chr1_2:17186001-17186020 | Msa0059770:intron | 30.0% | |
| AGTTCAGAGATAATCACTAT+GGG | + | chr1_2:17186119-17186138 | None:intergenic | 30.0% | |
| AAGTTCAGAGATAATCACTA+TGG | + | chr1_2:17186120-17186139 | None:intergenic | 30.0% | |
| GAGAAAAATAAGTCCTTAGA+AGG | - | chr1_2:17186318-17186337 | Msa0059770:intron | 30.0% | |
| TTCAAATGACATAGTGTTCT+AGG | + | chr1_2:17186385-17186404 | None:intergenic | 30.0% | |
| ! | TAGAACACTATGTCATTTGA+AGG | - | chr1_2:17186384-17186403 | Msa0059770:intron | 30.0% |
| TTCAGACATATCAATTGCTA+AGG | + | chr1_2:17186575-17186594 | None:intergenic | 30.0% | |
| GACCTTCATTAGTTGTATAA+TGG | + | chr1_2:17186711-17186730 | None:intergenic | 30.0% | |
| CAATGCTTCTTCATGTTATT+TGG | - | chr1_2:17186759-17186778 | Msa0059770:intron | 30.0% | |
| ATTAGTACCTTGGATGATAA+TGG | + | chr1_2:17187080-17187099 | None:intergenic | 30.0% | |
| !!! | CAAATACATATTTTAGTGGC+TGG | + | chr1_2:17187169-17187188 | None:intergenic | 30.0% |
| TTTGCGATTGCTATGAAATT+AGG | - | chr1_2:17187185-17187204 | Msa0059770:intron | 30.0% | |
| !!! | TTGTGTTGTGTGTTTTTTGT+TGG | - | chr1_2:17187475-17187494 | Msa0059770:intron | 30.0% |
| TGCGAGCTTAATTCATAAAT+AGG | - | chr1_2:17187693-17187712 | Msa0059770:intron | 30.0% | |
| ATTCTATAAGGATAAGAGCT+TGG | - | chr1_2:17187729-17187748 | Msa0059770:intron | 30.0% | |
| TACAAACTAACAAAGCTACA+TGG | + | chr1_2:17187757-17187776 | None:intergenic | 30.0% | |
| TGCTATAGTTCCTACTATTG+TGG | - | chr1_2:17185079-17185098 | Msa0059770:CDS | 35.0% | |
| !!! | GTGGTTTGTTTTCTTTAGCA+TGG | - | chr1_2:17185098-17185117 | Msa0059770:CDS | 35.0% |
| AAGAAAGAGAACAAACCACA+AGG | + | chr1_2:17185192-17185211 | None:intergenic | 35.0% | |
| ATATAGGATTTCAGGAGTAG+TGG | - | chr1_2:17185490-17185509 | Msa0059770:intron | 35.0% | |
| !! | GAGGGTACTCTATTTCAAAT+AGG | - | chr1_2:17185698-17185717 | Msa0059770:CDS | 35.0% |
| TATCTCTGAACTTCATTCGT+TGG | - | chr1_2:17186127-17186146 | Msa0059770:intron | 35.0% | |
| ! | GTTGTGCTTTTAGCACTATT+AGG | - | chr1_2:17186170-17186189 | Msa0059770:intron | 35.0% |
| TTAGCACTATTAGGTTTCTG+AGG | - | chr1_2:17186179-17186198 | Msa0059770:intron | 35.0% | |
| ATGTGCTTGAAGGAAAAAGA+AGG | + | chr1_2:17186251-17186270 | None:intergenic | 35.0% | |
| AAGTTAAGTCGATCCTTCTA+AGG | + | chr1_2:17186334-17186353 | None:intergenic | 35.0% | |
| TCATTAGTCAAGACATTCTG+TGG | - | chr1_2:17186357-17186376 | Msa0059770:intron | 35.0% | |
| AAACTATAACATCTGACCTC+TGG | + | chr1_2:17186468-17186487 | None:intergenic | 35.0% | |
| ! | TTCTTTTTGTGTGGTGTGTT+TGG | - | chr1_2:17186498-17186517 | Msa0059770:intron | 35.0% |
| !!! | TGTTTGGTTTTGATTCCTGT+TGG | - | chr1_2:17186514-17186533 | Msa0059770:intron | 35.0% |
| !!! | GTTTGGTTTTGATTCCTGTT+GGG | - | chr1_2:17186515-17186534 | Msa0059770:intron | 35.0% |
| !!! | TTTGGTTTTGATTCCTGTTG+GGG | - | chr1_2:17186516-17186535 | Msa0059770:intron | 35.0% |
| !! | ATTATTGCAGGTTTGCTACT+AGG | - | chr1_2:17186604-17186623 | Msa0059770:intron | 35.0% |
| TTCAGGTGAAAACTTCTCTT+TGG | + | chr1_2:17186816-17186835 | None:intergenic | 35.0% | |
| TTGTTAACTGAGTCATTAGC+AGG | - | chr1_2:17186885-17186904 | Msa0059770:intron | 35.0% | |
| TCCTATACCATTATCATCCA+AGG | - | chr1_2:17187070-17187089 | Msa0059770:intron | 35.0% | |
| !! | ACCTTGGATGATAATGGTAT+AGG | + | chr1_2:17187074-17187093 | None:intergenic | 35.0% |
| ! | TTTTAATGCACTGAAGTTGC+TGG | - | chr1_2:17187128-17187147 | Msa0059770:intron | 35.0% |
| TGCTATGAAATTAGGTGCTA+AGG | - | chr1_2:17187193-17187212 | Msa0059770:intron | 35.0% | |
| AAATATGACCGAGATCATAG+TGG | - | chr1_2:17187337-17187356 | Msa0059770:intron | 35.0% | |
| AATATGACCGAGATCATAGT+GGG | - | chr1_2:17187338-17187357 | Msa0059770:intron | 35.0% | |
| ! | CATTTTTCCCACTATGATCT+CGG | + | chr1_2:17187348-17187367 | None:intergenic | 35.0% |
| TACGATGACAAAACACAACA+AGG | + | chr1_2:17187444-17187463 | None:intergenic | 35.0% | |
| ! | TTGTTGTGTTTTGTCATCGT+AGG | - | chr1_2:17187443-17187462 | Msa0059770:intron | 35.0% |
| !! | AGTGAATTTGTTAAGGTGAG+AGG | - | chr1_2:17187533-17187552 | Msa0059770:intron | 35.0% |
| ! | CGTTGAATCATATTTGAAGC+CGG | + | chr1_2:17187609-17187628 | None:intergenic | 35.0% |
| CAATAACTCGAGGTTACAAG+GGG | + | chr1_2:17185163-17185182 | None:intergenic | 40.0% | |
| GCAATAACTCGAGGTTACAA+GGG | + | chr1_2:17185164-17185183 | None:intergenic | 40.0% | |
| AAGTTCCACTTCTGATGTAG+AGG | - | chr1_2:17185393-17185412 | Msa0059770:intron | 40.0% | |
| TAATGCCTCTACATCAGAAG+TGG | + | chr1_2:17185401-17185420 | None:intergenic | 40.0% | |
| ! | TTGAAGGAAAAAGAAGGTGC+TGG | + | chr1_2:17186245-17186264 | None:intergenic | 40.0% |
| ! | GAATTGCTTTGAGTCAGAGT+TGG | - | chr1_2:17186296-17186315 | Msa0059770:intron | 40.0% |
| ! | AATTGGTTCACATATGCCAG+AGG | - | chr1_2:17186449-17186468 | Msa0059770:intron | 40.0% |
| ! | GGGTGTTGTGTTTGTGTTTA+GGG | - | chr1_2:17186536-17186555 | Msa0059770:intron | 40.0% |
| ! | GGTGTTGTGTTTGTGTTTAG+GGG | - | chr1_2:17186537-17186556 | Msa0059770:intron | 40.0% |
| GGTGAAAACTTCTCTTTGGA+CGG | + | chr1_2:17186812-17186831 | None:intergenic | 40.0% | |
| TAACTGAGTCATTAGCAGGA+AGG | - | chr1_2:17186889-17186908 | Msa0059770:intron | 40.0% | |
| AACTGAGTCATTAGCAGGAA+GGG | - | chr1_2:17186890-17186909 | Msa0059770:intron | 40.0% | |
| !! | GGTATAGGAAGTACCTTGAA+AGG | + | chr1_2:17187059-17187078 | None:intergenic | 40.0% |
| ! | GTTTTGTCATCGTAGGATGT+AGG | - | chr1_2:17187450-17187469 | Msa0059770:intron | 40.0% |
| AATTCACTCGTCTGCAACAT+GGG | + | chr1_2:17187521-17187540 | None:intergenic | 40.0% | |
| AAATTCACTCGTCTGCAACA+TGG | + | chr1_2:17187522-17187541 | None:intergenic | 40.0% | |
| !! | GCAGACGAGTGAATTTGTTA+AGG | - | chr1_2:17187526-17187545 | Msa0059770:intron | 40.0% |
| AGCATCTCATCTTAAGGAAC+TGG | + | chr1_2:17187656-17187675 | None:intergenic | 40.0% | |
| AGCGAGACAAGCATTCTCTA+AGG | + | chr1_2:17184980-17184999 | None:intergenic | 45.0% | |
| AGAGAATGCTTGTCTCGCTA+AGG | - | chr1_2:17184981-17185000 | Msa0059770:three_prime_UTR | 45.0% | |
| AATGCTTGTCTCGCTAAGGT+TGG | - | chr1_2:17184985-17185004 | Msa0059770:three_prime_UTR | 45.0% | |
| ATGCTTGTCTCGCTAAGGTT+GGG | - | chr1_2:17184986-17185005 | Msa0059770:three_prime_UTR | 45.0% | |
| !!! | GGTTGGGGTTTTGGATTCTT+AGG | - | chr1_2:17185002-17185021 | Msa0059770:three_prime_UTR | 45.0% |
| !!! | GGGTTTTGGATTCTTAGGAG+CGG | - | chr1_2:17185007-17185026 | Msa0059770:three_prime_UTR | 45.0% |
| !!! | GGTTTTGGATTCTTAGGAGC+GGG | - | chr1_2:17185008-17185027 | Msa0059770:three_prime_UTR | 45.0% |
| !!! | GCTGTGTTAGTTTTTGCCTG+TGG | - | chr1_2:17185049-17185068 | Msa0059770:three_prime_UTR | 45.0% |
| ACTATAGCATACAGCACCAC+AGG | + | chr1_2:17185068-17185087 | None:intergenic | 45.0% | |
| AGCATGGTAGGCAACTGTTT+AGG | - | chr1_2:17185114-17185133 | Msa0059770:CDS | 45.0% | |
| GGCAATAACTCGAGGTTACA+AGG | + | chr1_2:17185165-17185184 | None:intergenic | 45.0% | |
| ATGGCAACGTATGTGCTTGA+AGG | + | chr1_2:17186261-17186280 | None:intergenic | 45.0% | |
| !! | GGGGTGTTGTGTTTGTGTTT+AGG | - | chr1_2:17186535-17186554 | Msa0059770:intron | 45.0% |
| !! | AGGTTTGCTACTAGGCTGAT+AGG | - | chr1_2:17186612-17186631 | Msa0059770:intron | 45.0% |
| AGAGCACATTGAATCGAACG+TGG | - | chr1_2:17186673-17186692 | Msa0059770:intron | 45.0% | |
| AACTTCTCTTTGGACGGTGA+TGG | + | chr1_2:17186806-17186825 | None:intergenic | 45.0% | |
| !! | CCTCTTTGGAGCTGATATTC+AGG | + | chr1_2:17186833-17186852 | None:intergenic | 45.0% |
| CCTGAATATCAGCTCCAAAG+AGG | - | chr1_2:17186830-17186849 | Msa0059770:intron | 45.0% | |
| TGAAAGGTCTGAAGAGGAAG+TGG | + | chr1_2:17187043-17187062 | None:intergenic | 45.0% | |
| CTTCCTCTTCAGACCTTTCA+AGG | - | chr1_2:17187043-17187062 | Msa0059770:intron | 45.0% | |
| GTACCTTGAAAGGTCTGAAG+AGG | + | chr1_2:17187049-17187068 | None:intergenic | 45.0% | |
| ATTCACTCGTCTGCAACATG+GGG | + | chr1_2:17187520-17187539 | None:intergenic | 45.0% | |
| TTTGTTAAGGTGAGAGGCAG+TGG | - | chr1_2:17187539-17187558 | Msa0059770:intron | 45.0% | |
| TGCTTGTCTCGCTAAGGTTG+GGG | - | chr1_2:17184987-17185006 | Msa0059770:three_prime_UTR | 50.0% | |
| ! | TCTCGCTAAGGTTGGGGTTT+TGG | - | chr1_2:17184993-17185012 | Msa0059770:three_prime_UTR | 50.0% |
| AACTGTTTAGGTGCCTGCGT+GGG | - | chr1_2:17185126-17185145 | Msa0059770:CDS | 50.0% | |
| AAGGCAGTGGCAATAACTCG+AGG | + | chr1_2:17185173-17185192 | None:intergenic | 50.0% | |
| GAGTTATTGCCACTGCCTTG+TGG | - | chr1_2:17185174-17185193 | Msa0059770:CDS | 50.0% | |
| GAGAACAAACCACAAGGCAG+TGG | + | chr1_2:17185186-17185205 | None:intergenic | 50.0% | |
| GTGCAGCTAGATTTCTCTCC+TGG | - | chr1_2:17185629-17185648 | Msa0059770:intron | 50.0% | |
| CACAAACACAACACCCCAAC+AGG | + | chr1_2:17186532-17186551 | None:intergenic | 50.0% | |
| ! | TCTTTGGACGGTGATGGTGA+TGG | + | chr1_2:17186800-17186819 | None:intergenic | 50.0% |
| TTCACTCGTCTGCAACATGG+GGG | + | chr1_2:17187519-17187538 | None:intergenic | 50.0% | |
| CAACTGTTTAGGTGCCTGCG+TGG | - | chr1_2:17185125-17185144 | Msa0059770:CDS | 55.0% | |
| CGAGGTTACAAGGGGCAGAA+AGG | + | chr1_2:17185155-17185174 | None:intergenic | 55.0% | |
| ACACTTCAGCGGATGCTGCA+AGG | + | chr1_2:17187583-17187602 | None:intergenic | 55.0% | |
| GCATCCGCTGAAGTGTGTAC+CGG | - | chr1_2:17187587-17187606 | Msa0059770:intron | 55.0% | |
| GAAGCCGGTACACACTTCAG+CGG | + | chr1_2:17187594-17187613 | None:intergenic | 55.0% | |
| !! | GGCAGAAAGGCATCCCACGC+AGG | + | chr1_2:17185142-17185161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 17184887 | 17187854 | 17184887 | ID=Msa0059770;Name=Msa0059770 |
| chr1_2 | mRNA | 17184887 | 17187854 | 17184887 | ID=Msa0059770-mRNA-1;Parent=Msa0059770;Name=Msa0059770-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.4|0.6|0.25|0.6|5|190|115 |
| chr1_2 | exon | 17184887 | 17185211 | 17184887 | ID=Msa0059770-mRNA-1:exon:6696;Parent=Msa0059770-mRNA-1 |
| chr1_2 | exon | 17185677 | 17185772 | 17185677 | ID=Msa0059770-mRNA-1:exon:6695;Parent=Msa0059770-mRNA-1 |
| chr1_2 | exon | 17185890 | 17185990 | 17185890 | ID=Msa0059770-mRNA-1:exon:6694;Parent=Msa0059770-mRNA-1 |
| chr1_2 | exon | 17186946 | 17186953 | 17186946 | ID=Msa0059770-mRNA-1:exon:6693;Parent=Msa0059770-mRNA-1 |
| chr1_2 | exon | 17187847 | 17187854 | 17187847 | ID=Msa0059770-mRNA-1:exon:6692;Parent=Msa0059770-mRNA-1 |
| chr1_2 | CDS | 17187847 | 17187854 | 17187847 | ID=Msa0059770-mRNA-1:cds;Parent=Msa0059770-mRNA-1 |
| chr1_2 | CDS | 17186946 | 17186953 | 17186946 | ID=Msa0059770-mRNA-1:cds;Parent=Msa0059770-mRNA-1 |
| chr1_2 | CDS | 17185890 | 17185990 | 17185890 | ID=Msa0059770-mRNA-1:cds;Parent=Msa0059770-mRNA-1 |
| chr1_2 | CDS | 17185677 | 17185772 | 17185677 | ID=Msa0059770-mRNA-1:cds;Parent=Msa0059770-mRNA-1 |
| chr1_2 | CDS | 17185077 | 17185211 | 17185077 | ID=Msa0059770-mRNA-1:cds;Parent=Msa0059770-mRNA-1 |
| chr1_2 | three_prime_UTR | 17184887 | 17185076 | 17184887 | ID=Msa0059770-mRNA-1:three_prime_utr;Parent=Msa0059770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
