Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353690 | PNY14955.1 | 91.011 | 89 | 8 | 0 | 39 | 127 | 37 | 125 | 1.74e-48 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353690 | sp|Q9SFU0|SC24A_ARATH | 74.157 | 89 | 23 | 0 | 39 | 127 | 600 | 688 | 3.56e-41 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353690 | A0A2K3PI82 | 91.011 | 89 | 8 | 0 | 39 | 127 | 37 | 125 | 8.30e-49 | 172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059770 | Msa0353690 | 0.815445 | 9.212693e-52 | -8.615850e-47 |
| Msa0145250 | Msa0353690 | 0.805677 | 1.189063e-49 | -8.615850e-47 |
| Msa0153200 | Msa0353690 | 0.819325 | 1.232262e-52 | -8.615850e-47 |
| Msa0311630 | Msa0353690 | 0.800276 | 1.554588e-48 | -8.615850e-47 |
| Msa0324150 | Msa0353690 | 0.843270 | 1.553610e-58 | -8.615850e-47 |
| Msa0326200 | Msa0353690 | 0.941812 | 2.163119e-101 | -8.615850e-47 |
| Msa0353190 | Msa0353690 | 0.945778 | 1.612936e-104 | -8.615850e-47 |
| Msa0353690 | Msa0360900 | 0.915145 | 8.327751e-85 | -8.615850e-47 |
| Msa0353690 | Msa0366580 | 0.804642 | 1.958526e-49 | -8.615850e-47 |
| Msa0353690 | Msa0431500 | 0.915568 | 5.040615e-85 | -8.615850e-47 |
| Msa0353690 | Msa0452620 | 0.809428 | 1.901931e-50 | -8.615850e-47 |
| Msa0353690 | Msa0456200 | 0.955744 | 1.494335e-113 | -8.615850e-47 |
| Msa0353690 | Msa0512900 | 0.811245 | 7.711341e-51 | -8.615850e-47 |
| Msa0353690 | Msa0527680 | 0.814571 | 1.439738e-51 | -8.615850e-47 |
| Msa0353690 | Msa0533430 | 0.838570 | 2.659012e-57 | -8.615850e-47 |
| Msa0353690 | Msa0546710 | 0.835283 | 1.835925e-56 | -8.615850e-47 |
| Msa0353690 | Msa0548060 | 0.805168 | 1.520535e-49 | -8.615850e-47 |
| Msa0353690 | Msa0627410 | 0.949624 | 8.733706e-108 | -8.615850e-47 |
| Msa0353690 | Msa0639460 | 0.840147 | 1.035611e-57 | -8.615850e-47 |
| Msa0353690 | Msa0657970 | 0.811699 | 6.144373e-51 | -8.615850e-47 |
| Msa0353690 | Msa0661870 | 0.824529 | 7.683198e-54 | -8.615850e-47 |
| Msa0353690 | Msa0682360 | 0.841801 | 3.811128e-58 | -8.615850e-47 |
| Msa0353690 | Msa0691880 | 0.825818 | 3.809057e-54 | -8.615850e-47 |
| Msa0353690 | Msa0741570 | 0.820184 | 7.843439e-53 | -8.615850e-47 |
| Msa0353690 | Msa0815320 | 0.822880 | 1.869678e-53 | -8.615850e-47 |
| Msa0353690 | Msa0818010 | 0.802592 | 5.213779e-49 | -8.615850e-47 |
| Msa0353690 | Msa0822650 | 0.804442 | 2.155751e-49 | -8.615850e-47 |
| Msa0353690 | Msa0853550 | 0.803595 | 3.234980e-49 | -8.615850e-47 |
| Msa0353690 | Msa0858360 | 0.804649 | 1.952283e-49 | -8.615850e-47 |
| Msa0353690 | Msa0885280 | 0.819408 | 1.180074e-52 | -8.615850e-47 |
| Msa0353690 | Msa0885290 | 0.828437 | 8.997151e-55 | -8.615850e-47 |
| Msa0353690 | Msa0887990 | 0.861823 | 7.827201e-64 | -8.615850e-47 |
| Msa0353690 | Msa0902020 | 0.813500 | 2.479913e-51 | -8.615850e-47 |
| Msa0353690 | Msa0909120 | 0.812057 | 5.133551e-51 | -8.615850e-47 |
| Msa0353690 | Msa0912500 | 0.832752 | 7.899774e-56 | -8.615850e-47 |
| Msa0353690 | Msa0963310 | 0.804021 | 2.637606e-49 | -8.615850e-47 |
| Msa0353690 | Msa0965750 | 0.852227 | 5.299471e-61 | -8.615850e-47 |
| Msa0353690 | Msa1006250 | 0.831417 | 1.689171e-55 | -8.615850e-47 |
| Msa0353690 | Msa1084240 | 0.825152 | 5.478226e-54 | -8.615850e-47 |
| Msa0353690 | Msa1178720 | 0.895496 | 9.073447e-76 | -8.615850e-47 |
| Msa0353690 | Msa1182730 | 0.810179 | 1.311185e-50 | -8.615850e-47 |
| Msa0353690 | Msa1187940 | 0.811774 | 5.916799e-51 | -8.615850e-47 |
| Msa0353690 | Msa1232060 | 0.803232 | 3.845486e-49 | -8.615850e-47 |
| Msa0353690 | Msa1288000 | 0.841696 | 4.062525e-58 | -8.615850e-47 |
| Msa0353690 | Msa1297210 | 0.826454 | 2.689132e-54 | -8.615850e-47 |
| Msa0353690 | Msa1324780 | 0.815877 | 7.381611e-52 | -8.615850e-47 |
| Msa0353690 | Msa1347360 | 0.809196 | 2.132239e-50 | -8.615850e-47 |
| Msa0353690 | Msa1384370 | 0.809491 | 1.843129e-50 | -8.615850e-47 |
| Msa0353690 | Msa1397610 | 0.820182 | 7.851942e-53 | -8.615850e-47 |
| Msa0353690 | Msa1438250 | 0.823187 | 1.585475e-53 | -8.615850e-47 |
| Msa0353690 | Msa1463140 | 0.801794 | 7.611519e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353690 | MtrunA17_Chr7g0271481 | 87.912 | 91 | 11 | 0 | 39 | 129 | 582 | 672 | 2.24e-50 | 171 |
| Msa0353690 | MtrunA17_Chr1g0210851 | 35.556 | 90 | 57 | 1 | 39 | 127 | 678 | 767 | 2.86e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0353690 | AT3G07100.1 | 74.157 | 89 | 23 | 0 | 39 | 127 | 600 | 688 | 3.62e-42 | 148 |
| Msa0353690 | AT4G32640.2 | 32.222 | 90 | 61 | 0 | 38 | 127 | 661 | 750 | 2.37e-11 | 60.5 |
| Msa0353690 | AT4G32640.1 | 32.222 | 90 | 61 | 0 | 38 | 127 | 661 | 750 | 2.37e-11 | 60.5 |
| Msa0353690 | AT3G44340.5 | 35.227 | 88 | 56 | 1 | 41 | 127 | 666 | 753 | 4.14e-11 | 59.7 |
| Msa0353690 | AT3G44340.2 | 35.227 | 88 | 56 | 1 | 41 | 127 | 666 | 753 | 4.14e-11 | 59.7 |
| Msa0353690 | AT3G44340.1 | 35.227 | 88 | 56 | 1 | 41 | 127 | 666 | 753 | 4.15e-11 | 59.7 |
| Msa0353690 | AT3G44340.4 | 35.227 | 88 | 56 | 1 | 41 | 127 | 666 | 753 | 4.15e-11 | 59.7 |
| Msa0353690 | AT3G44340.3 | 35.227 | 88 | 56 | 1 | 41 | 127 | 666 | 753 | 4.15e-11 | 59.7 |
Find 32 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGATCCGGATTTGTTTC+AGG | 0.210528 | 3_1:-24187830 | Msa0353690:CDS |
| TGCTCATAAAATGGATCTTC+AGG | 0.293277 | 3_1:+24185589 | None:intergenic |
| AGAAATTGAGTCATGAATTA+AGG | 0.308061 | 3_1:-24185023 | Msa0353690:CDS |
| CATACACATTTACTGAGATT+TGG | 0.310882 | 3_1:+24185542 | None:intergenic |
| GCAGCCATCTGCTCATAAAA+TGG | 0.311495 | 3_1:+24185580 | None:intergenic |
| GGCCACGACCTTGGCGGATC+CGG | 0.374979 | 3_1:-24187842 | Msa0353690:CDS |
| CTCATAATGGTTGTGTCATC+AGG | 0.394605 | 3_1:-24187144 | Msa0353690:intron |
| TCCTGTCTGTGTAGGAACTC+TGG | 0.429146 | 3_1:-24185106 | Msa0353690:intron |
| CCAAATGGCCATGGATTTGT+CGG | 0.435036 | 3_1:-24187882 | None:intergenic |
| TCTCCCCATGAGTAGCTGAT+TGG | 0.442822 | 3_1:+24185043 | None:intergenic |
| CATCTCACCGGCCACGACCT+TGG | 0.464336 | 3_1:-24187851 | Msa0353690:CDS |
| TGAGTAGCTGATTGGAAAGC+TGG | 0.469035 | 3_1:+24185051 | None:intergenic |
| TCTTTCACCTGAAACAAATC+CGG | 0.479198 | 3_1:+24187823 | None:intergenic |
| ATCCGGATCCGCCAAGGTCG+TGG | 0.482015 | 3_1:+24187840 | None:intergenic |
| GATTTGTTTCAGGTGAAAGA+AGG | 0.498445 | 3_1:-24187820 | Msa0353690:intron |
| GAAAAGTGATGAGCTCATAA+TGG | 0.523311 | 3_1:-24187157 | Msa0353690:CDS |
| GAGAGACTGCATGGGAAGCA+TGG | 0.524555 | 3_1:-24184987 | Msa0353690:CDS |
| GCTTTCCAATCAGCTACTCA+TGG | 0.528786 | 3_1:-24185048 | Msa0353690:CDS |
| TACACTGACATAGCCTCCTT+AGG | 0.536987 | 3_1:-24185505 | Msa0353690:intron |
| CTTTCCAATCAGCTACTCAT+GGG | 0.542155 | 3_1:-24185047 | Msa0353690:CDS |
| GGAAAATAAAACACCTAAGG+AGG | 0.554451 | 3_1:+24185492 | None:intergenic |
| GGATCCGCCAAGGTCGTGGC+CGG | 0.556667 | 3_1:+24187844 | None:intergenic |
| ACCTCACAAGAGAGACTGCA+TGG | 0.560035 | 3_1:-24184996 | Msa0353690:CDS |
| CTCACCGGCCACGACCTTGG+CGG | 0.563597 | 3_1:-24187848 | Msa0353690:CDS |
| CCACCTTAACCAAATGGCCA+TGG | 0.578431 | 3_1:-24187891 | None:intergenic |
| TGAAAACGCCGACAAATCCA+TGG | 0.580767 | 3_1:+24187874 | None:intergenic |
| ACTCTGGCAAAGTACACTGC+TGG | 0.591069 | 3_1:-24185090 | Msa0353690:CDS |
| AAACAAATCCGGATCCGCCA+AGG | 0.597287 | 3_1:+24187834 | None:intergenic |
| CCCATGCAGTCTCTCTTGTG+AGG | 0.598716 | 3_1:+24184995 | None:intergenic |
| TTTGGGACAGATAAAGAACA+TGG | 0.635621 | 3_1:-24185622 | Msa0353690:intron |
| TTTCCAATCAGCTACTCATG+GGG | 0.686768 | 3_1:-24185046 | Msa0353690:CDS |
| CCTCACAAGAGAGACTGCAT+GGG | 0.693489 | 3_1:-24184995 | Msa0353690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTGTGATATAATATA+AGG | - | chr3_1:24185857-24185876 | Msa0353690:intron | 10.0% |
| !!! | TTCTAATTCAACAATTATTT+TGG | + | chr3_1:24186293-24186312 | None:intergenic | 15.0% |
| !!! | ATGAAGAAATTAATCATTTT+AGG | - | chr3_1:24186320-24186339 | Msa0353690:intron | 15.0% |
| !!! | TGAAGAAATTAATCATTTTA+GGG | - | chr3_1:24186321-24186340 | Msa0353690:intron | 15.0% |
| !! | AAATATTGATAGACTCATTT+CGG | + | chr3_1:24185510-24185529 | None:intergenic | 20.0% |
| !! | TTTATCTCAAATCTTGTATT+TGG | - | chr3_1:24186216-24186235 | Msa0353690:intron | 20.0% |
| !!! | CAAATCTTTTCATTAAGAAT+TGG | + | chr3_1:24186713-24186732 | None:intergenic | 20.0% |
| !! | ATTCTTAATGAAAAGATTTG+TGG | - | chr3_1:24186713-24186732 | Msa0353690:intron | 20.0% |
| !! | TTAAAGTAATTAGAAATCCA+TGG | - | chr3_1:24186833-24186852 | Msa0353690:intron | 20.0% |
| !!! | ATATTTTTGTTGTATTAGTG+TGG | - | chr3_1:24187001-24187020 | Msa0353690:intron | 20.0% |
| !! | TAACAGGTTTAAAAATAGAA+TGG | + | chr3_1:24187391-24187410 | None:intergenic | 20.0% |
| ! | AAACCATTAAGTACATCTAA+TGG | - | chr3_1:24185134-24185153 | Msa0353690:intron | 25.0% |
| ! | AAACCATTAGATGTACTTAA+TGG | + | chr3_1:24185140-24185159 | None:intergenic | 25.0% |
| !! | TTAAGTACATCTAATGGTTT+TGG | - | chr3_1:24185140-24185159 | Msa0353690:intron | 25.0% |
| ! | AAACCATTAAGTACATCTAA+TGG | - | chr3_1:24185134-24185153 | Msa0353690:intron | 25.0% |
| ! | AAACCATTAGATGTACTTAA+TGG | + | chr3_1:24185140-24185159 | None:intergenic | 25.0% |
| !! | ACTAAAGTTACACTTTTATG+TGG | - | chr3_1:24185476-24185495 | Msa0353690:intron | 25.0% |
| !!! | AATATTTTGATGCATGAATG+TGG | - | chr3_1:24185523-24185542 | Msa0353690:CDS | 25.0% |
| !!! | TATTGTTTATAGTCTTGTAG+CGG | + | chr3_1:24185607-24185626 | None:intergenic | 25.0% |
| ! | ATCGATATTTCGTGAAATAT+TGG | - | chr3_1:24185773-24185792 | Msa0353690:intron | 25.0% |
| ! | CTATTTATTTCCCTTGATTA+TGG | + | chr3_1:24185816-24185835 | None:intergenic | 25.0% |
| !!! | TACTGATTTAGTGTGAATTT+TGG | - | chr3_1:24186349-24186368 | Msa0353690:intron | 25.0% |
| !!! | ACTGATTTAGTGTGAATTTT+GGG | - | chr3_1:24186350-24186369 | Msa0353690:intron | 25.0% |
| ! | ATTTGTCAGTAATTGCAAAT+GGG | - | chr3_1:24186506-24186525 | Msa0353690:intron | 25.0% |
| !!! | AAGTTAAGTCATGTTTTAGT+TGG | - | chr3_1:24186554-24186573 | Msa0353690:intron | 25.0% |
| !!! | GAAATTTTGGAAAAAATGTG+TGG | - | chr3_1:24186766-24186785 | Msa0353690:intron | 25.0% |
| ! | TTGACTTTAATAAGATGCTT+TGG | - | chr3_1:24186896-24186915 | Msa0353690:intron | 25.0% |
| ! | AAAACTAGTCATTTGTTCAT+TGG | - | chr3_1:24186978-24186997 | Msa0353690:intron | 25.0% |
| ! | GTGATAAAATTCATATGCAA+TGG | + | chr3_1:24187056-24187075 | None:intergenic | 25.0% |
| ! | ATGTTCTGATATTTGTGTAA+TGG | - | chr3_1:24187102-24187121 | Msa0353690:intron | 25.0% |
| ! | AAGTTCAACACACAAAAATA+TGG | + | chr3_1:24187170-24187189 | None:intergenic | 25.0% |
| !!! | AGTGTATTAGTGTATTGATT+TGG | - | chr3_1:24187192-24187211 | Msa0353690:intron | 25.0% |
| !!! | GTGTATTAGTGTATTGATTT+GGG | - | chr3_1:24187193-24187212 | Msa0353690:intron | 25.0% |
| ! | ACGAAATACATAGAAATTGA+AGG | + | chr3_1:24187364-24187383 | None:intergenic | 25.0% |
| ! | ATCAATTAATCAAGAGTAAC+AGG | + | chr3_1:24187407-24187426 | None:intergenic | 25.0% |
| ! | AGAAATTGAGTCATGAATTA+AGG | - | chr3_1:24187809-24187828 | Msa0353690:intron | 25.0% |
| ! | TAATGGTTTTCACAGCAAAA+TGG | - | chr3_1:24185194-24185213 | Msa0353690:intron | 30.0% |
| ATTATGTTGCGATTTATGCA+CGG | - | chr3_1:24185355-24185374 | Msa0353690:intron | 30.0% | |
| TCCACTCATAGTAATGTTAT+GGG | + | chr3_1:24185414-24185433 | None:intergenic | 30.0% | |
| ATCCACTCATAGTAATGTTA+TGG | + | chr3_1:24185415-24185434 | None:intergenic | 30.0% | |
| !! | TCGTTTTTGTGTGACAAATA+TGG | + | chr3_1:24185448-24185467 | None:intergenic | 30.0% |
| ! | TTTGGTAGTTTCATGCAATA+AGG | - | chr3_1:24185946-24185965 | Msa0353690:intron | 30.0% |
| ! | TTGGTAGTTTCATGCAATAA+GGG | - | chr3_1:24185947-24185966 | Msa0353690:intron | 30.0% |
| ! | TCAAATCTTGTATTTGGTGA+AGG | - | chr3_1:24186222-24186241 | Msa0353690:intron | 30.0% |
| ! | ACTGTCTAATTGTTGCATTT+TGG | - | chr3_1:24186443-24186462 | Msa0353690:intron | 30.0% |
| CAACGACATAACATCTTAAT+CGG | + | chr3_1:24186476-24186495 | None:intergenic | 30.0% | |
| GATTTGTCAGTAATTGCAAA+TGG | - | chr3_1:24186505-24186524 | Msa0353690:intron | 30.0% | |
| TTTGTCAGTAATTGCAAATG+GGG | - | chr3_1:24186507-24186526 | Msa0353690:intron | 30.0% | |
| GTCACACTTATGTCAAAAAA+TGG | - | chr3_1:24186735-24186754 | Msa0353690:intron | 30.0% | |
| !! | AATGGACAGTGTTGAAATTT+TGG | - | chr3_1:24186753-24186772 | Msa0353690:intron | 30.0% |
| AAAATTCATATGCAATGGCA+AGG | + | chr3_1:24187051-24187070 | None:intergenic | 30.0% | |
| !! | GATATTTGTGTAATGGATAG+AGG | - | chr3_1:24187109-24187128 | Msa0353690:intron | 30.0% |
| CATACACATTTACTGAGATT+TGG | + | chr3_1:24187293-24187312 | None:intergenic | 30.0% | |
| GAAGGAAAATAAAACACCTA+AGG | + | chr3_1:24187346-24187365 | None:intergenic | 30.0% | |
| ! | ATTTGATGATTCTTCAGTTG+TGG | - | chr3_1:24187429-24187448 | Msa0353690:intron | 30.0% |
| ! | ACTTGATGACATGAGTTTAT+GGG | - | chr3_1:24187467-24187486 | Msa0353690:intron | 30.0% |
| TAAACTGATACTCTAACTCA+TGG | - | chr3_1:24187510-24187529 | Msa0353690:intron | 30.0% | |
| AAATGCTGACAGAATTACAT+CGG | + | chr3_1:24187640-24187659 | None:intergenic | 30.0% | |
| TCTTTCACCTGAAACAAATC+CGG | + | chr3_1:24185012-24185031 | None:intergenic | 35.0% | |
| ! | GATTTGTTTCAGGTGAAAGA+AGG | - | chr3_1:24185012-24185031 | Msa0353690:CDS | 35.0% |
| GATGAGATTGAATATTCCAG+TGG | - | chr3_1:24185271-24185290 | Msa0353690:intron | 35.0% | |
| TAATGTTATGGGAGTGGTTA+TGG | + | chr3_1:24185403-24185422 | None:intergenic | 35.0% | |
| TCATAGTAATGTTATGGGAG+TGG | + | chr3_1:24185409-24185428 | None:intergenic | 35.0% | |
| TCCCATAACATTACTATGAG+TGG | - | chr3_1:24185410-24185429 | Msa0353690:intron | 35.0% | |
| TTGTGTGACAAATATGGTAC+CGG | + | chr3_1:24185442-24185461 | None:intergenic | 35.0% | |
| GAAAAGTGATGAGCTCATAA+TGG | - | chr3_1:24185675-24185694 | Msa0353690:intron | 35.0% | |
| AATGTCATAGTCTGGTAACA+AGG | - | chr3_1:24185722-24185741 | Msa0353690:intron | 35.0% | |
| TTCCTTGAGTACCATAATCA+AGG | - | chr3_1:24185802-24185821 | Msa0353690:intron | 35.0% | |
| TCCTTGAGTACCATAATCAA+GGG | - | chr3_1:24185803-24185822 | Msa0353690:intron | 35.0% | |
| ! | ACAAAGGGGTGTATAGAAAA+GGG | + | chr3_1:24185901-24185920 | None:intergenic | 35.0% |
| ! | TACAAAGGGGTGTATAGAAA+AGG | + | chr3_1:24185902-24185921 | None:intergenic | 35.0% |
| TGGTAGTTTCATGCAATAAG+GGG | - | chr3_1:24185948-24185967 | Msa0353690:intron | 35.0% | |
| GAGATAAACATCACCTTCAA+CGG | + | chr3_1:24186204-24186223 | None:intergenic | 35.0% | |
| AAGAGAGACTAAATGATTGG+AGG | + | chr3_1:24186656-24186675 | None:intergenic | 35.0% | |
| CCAAAGAGAGACTAAATGAT+TGG | + | chr3_1:24186659-24186678 | None:intergenic | 35.0% | |
| CCAATCATTTAGTCTCTCTT+TGG | - | chr3_1:24186656-24186675 | Msa0353690:intron | 35.0% | |
| TAACATCACACATTTCACCA+TGG | + | chr3_1:24186853-24186872 | None:intergenic | 35.0% | |
| ! | TTTGGGACAGATAAAGAACA+TGG | - | chr3_1:24187210-24187229 | Msa0353690:intron | 35.0% |
| TGCTCATAAAATGGATCTTC+AGG | + | chr3_1:24187246-24187265 | None:intergenic | 35.0% | |
| ! | AGATCCATTTTATGAGCAGA+TGG | - | chr3_1:24187248-24187267 | Msa0353690:intron | 35.0% |
| GGAAAATAAAACACCTAAGG+AGG | + | chr3_1:24187343-24187362 | None:intergenic | 35.0% | |
| ! | GACTTGATGACATGAGTTTA+TGG | - | chr3_1:24187466-24187485 | Msa0353690:intron | 35.0% |
| GGATCTATTTGACTATGAAC+TGG | - | chr3_1:24187531-24187550 | Msa0353690:intron | 35.0% | |
| AATGCTGACAGAATTACATC+GGG | + | chr3_1:24187639-24187658 | None:intergenic | 35.0% | |
| TGTAATTCTGTCAGCATTTG+CGG | - | chr3_1:24187641-24187660 | Msa0353690:intron | 35.0% | |
| !!! | GTTTTTTTTCCTGTCTGTGT+AGG | - | chr3_1:24187718-24187737 | Msa0353690:intron | 35.0% |
| ! | TGGTTTTCTTTGATCCAGCA+GGG | + | chr3_1:24185120-24185139 | None:intergenic | 40.0% |
| ! | ATGGTTTTCTTTGATCCAGC+AGG | + | chr3_1:24185121-24185140 | None:intergenic | 40.0% |
| !! | TCAGTTTGTTTTCGCGTTTG+AGG | - | chr3_1:24185320-24185339 | Msa0353690:intron | 40.0% |
| TTACTATGAGTGGATAGCTC+CGG | - | chr3_1:24185420-24185439 | Msa0353690:intron | 40.0% | |
| TCTTGCATTCTTGCCTATCA+TGG | - | chr3_1:24185546-24185565 | Msa0353690:CDS | 40.0% | |
| CAGTATGTAGAAGCCATGAT+AGG | + | chr3_1:24185562-24185581 | None:intergenic | 40.0% | |
| CTATCATGGCTTCTACATAC+TGG | - | chr3_1:24185560-24185579 | Msa0353690:CDS | 40.0% | |
| CTCATAATGGTTGTGTCATC+AGG | - | chr3_1:24185688-24185707 | Msa0353690:intron | 40.0% | |
| ATAGTCTGGTAACAAGGTAG+TGG | - | chr3_1:24185728-24185747 | Msa0353690:intron | 40.0% | |
| TCCCTTGATTATGGTACTCA+AGG | + | chr3_1:24185807-24185826 | None:intergenic | 40.0% | |
| ! | CAAAGGGGTGTATAGAAAAG+GGG | + | chr3_1:24185900-24185919 | None:intergenic | 40.0% |
| TCATGCAATAAGGGGTAGTT+TGG | - | chr3_1:24185956-24185975 | Msa0353690:intron | 40.0% | |
| !! | AGTTGATGGAGGTGATAGAA+CGG | + | chr3_1:24186084-24186103 | None:intergenic | 40.0% |
| AGGAGTTGTGATTCGATAGT+GGG | + | chr3_1:24186107-24186126 | None:intergenic | 40.0% | |
| AAGGAGTTGTGATTCGATAG+TGG | + | chr3_1:24186108-24186127 | None:intergenic | 40.0% | |
| GAGGAAAACGCAAAAAGAGT+GGG | + | chr3_1:24186160-24186179 | None:intergenic | 40.0% | |
| TCAGTAATTGCAAATGGGGA+GGG | - | chr3_1:24186511-24186530 | Msa0353690:intron | 40.0% | |
| ! | GAGGGGATGATAATTTGTGT+TGG | - | chr3_1:24186529-24186548 | Msa0353690:intron | 40.0% |
| GTGGTTACGTCTTTGTTACA+TGG | - | chr3_1:24186785-24186804 | Msa0353690:intron | 40.0% | |
| !! | TAATGGATAGAGGCATTGAG+TGG | - | chr3_1:24187119-24187138 | Msa0353690:intron | 40.0% |
| CATCAGAACGCAAGACTATA+TGG | + | chr3_1:24187675-24187694 | None:intergenic | 40.0% | |
| CTTTCCAATCAGCTACTCAT+GGG | - | chr3_1:24187785-24187804 | Msa0353690:intron | 40.0% | |
| TTTCCAATCAGCTACTCATG+GGG | - | chr3_1:24187786-24187805 | Msa0353690:intron | 40.0% | |
| TGAAAACGCCGACAAATCCA+TGG | + | chr3_1:24184961-24184980 | None:intergenic | 45.0% | |
| GTCTGTGAACAGCACTAGAT+CGG | - | chr3_1:24185034-24185053 | Msa0353690:CDS | 45.0% | |
| ! | TGTTTTCAATTGCACCCTGC+TGG | - | chr3_1:24185103-24185122 | Msa0353690:intron | 45.0% |
| !!! | TGGTTTTGGAGTACAACTGC+TGG | - | chr3_1:24185154-24185173 | Msa0353690:intron | 45.0% |
| !! | ATGGTTTTGCCATTCCCGTA+CGG | - | chr3_1:24185213-24185232 | Msa0353690:intron | 45.0% |
| ! | ACGGTGATGATGATGAACGA+CGG | - | chr3_1:24185241-24185260 | Msa0353690:intron | 45.0% |
| TCGTTCATCATCATCACCAC+TGG | + | chr3_1:24185290-24185309 | None:intergenic | 45.0% | |
| ! | GTGGTGATGATGATGAACGA+CGG | - | chr3_1:24185290-24185309 | Msa0353690:intron | 45.0% |
| !! | GTTTTCGCGTTTGAGGTTGT+CGG | - | chr3_1:24185327-24185346 | Msa0353690:intron | 45.0% |
| CGATTTATGCACGGTGCATA+AGG | - | chr3_1:24185364-24185383 | Msa0353690:intron | 45.0% | |
| TGGTTGTGTCATCAGGTAAG+TGG | - | chr3_1:24185695-24185714 | Msa0353690:intron | 45.0% | |
| GTGGTGTGAATGTCATAGTC+TGG | - | chr3_1:24185714-24185733 | Msa0353690:intron | 45.0% | |
| ! | TCTGGTAACAAGGTAGTGGT+AGG | - | chr3_1:24185732-24185751 | Msa0353690:intron | 45.0% |
| ACATCAGCAGTGGTACAAAG+GGG | + | chr3_1:24185915-24185934 | None:intergenic | 45.0% | |
| CACATCAGCAGTGGTACAAA+GGG | + | chr3_1:24185916-24185935 | None:intergenic | 45.0% | |
| AGGAAGAGGAGAAGATTGTG+GGG | + | chr3_1:24185997-24186016 | None:intergenic | 45.0% | |
| GAGGAAGAGGAGAAGATTGT+GGG | + | chr3_1:24185998-24186017 | None:intergenic | 45.0% | |
| AGAGGAAGAGGAGAAGATTG+TGG | + | chr3_1:24185999-24186018 | None:intergenic | 45.0% | |
| GATCTGTTCAGAAGAGGAAG+AGG | + | chr3_1:24186011-24186030 | None:intergenic | 45.0% | |
| AAGGTCGATCTGTTCAGAAG+AGG | + | chr3_1:24186017-24186036 | None:intergenic | 45.0% | |
| TCCTCTTCCTCTTCTCTCTT+TGG | - | chr3_1:24186038-24186057 | Msa0353690:intron | 45.0% | |
| !! | GATTCGATAGTGGGAGTTGA+TGG | + | chr3_1:24186098-24186117 | None:intergenic | 45.0% |
| GGAGAGAAAGGTAGTGATGA+AGG | + | chr3_1:24186127-24186146 | None:intergenic | 45.0% | |
| AAAAGAGTGGGAGGAAATGG+CGG | + | chr3_1:24186148-24186167 | None:intergenic | 45.0% | |
| GCAAAAAGAGTGGGAGGAAA+TGG | + | chr3_1:24186151-24186170 | None:intergenic | 45.0% | |
| GAAAACGCAAAAAGAGTGGG+AGG | + | chr3_1:24186157-24186176 | None:intergenic | 45.0% | |
| GGAGGAAAACGCAAAAAGAG+TGG | + | chr3_1:24186161-24186180 | None:intergenic | 45.0% | |
| ! | CTTTTTGCGTTTTCCTCCGA+CGG | - | chr3_1:24186163-24186182 | Msa0353690:intron | 45.0% |
| TTCAACGGAGAGAGAGATAG+CGG | + | chr3_1:24186189-24186208 | None:intergenic | 45.0% | |
| GTCAGTAATTGCAAATGGGG+AGG | - | chr3_1:24186510-24186529 | Msa0353690:intron | 45.0% | |
| CAGTAATTGCAAATGGGGAG+GGG | - | chr3_1:24186512-24186531 | Msa0353690:intron | 45.0% | |
| CTCTTTGGTTGTTCCTCTGA+AGG | - | chr3_1:24186671-24186690 | Msa0353690:intron | 45.0% | |
| CTTAATCACTACGCCTTCAG+AGG | + | chr3_1:24186687-24186706 | None:intergenic | 45.0% | |
| ! | CATTGAGTGGTGGAATTGGT+TGG | - | chr3_1:24187132-24187151 | Msa0353690:intron | 45.0% |
| GCAGCCATCTGCTCATAAAA+TGG | + | chr3_1:24187255-24187274 | None:intergenic | 45.0% | |
| TACACTGACATAGCCTCCTT+AGG | - | chr3_1:24187327-24187346 | Msa0353690:intron | 45.0% | |
| ACAGAATTACATCGGGACAC+GGG | + | chr3_1:24187632-24187651 | None:intergenic | 45.0% | |
| GACAGAATTACATCGGGACA+CGG | + | chr3_1:24187633-24187652 | None:intergenic | 45.0% | |
| TGAGTAGCTGATTGGAAAGC+TGG | + | chr3_1:24187784-24187803 | None:intergenic | 45.0% | |
| GCTTTCCAATCAGCTACTCA+TGG | - | chr3_1:24187784-24187803 | Msa0353690:intron | 45.0% | |
| ! | TCGGCGTTTTCACATCTCAC+CGG | - | chr3_1:24184969-24184988 | Msa0353690:CDS | 50.0% |
| AAACAAATCCGGATCCGCCA+AGG | + | chr3_1:24185001-24185020 | None:intergenic | 50.0% | |
| GCACTAGATCGGTGTATGAG+TGG | - | chr3_1:24185045-24185064 | Msa0353690:CDS | 50.0% | |
| GGTGTATGAGTGGAGAGAGA+AGG | - | chr3_1:24185055-24185074 | Msa0353690:CDS | 50.0% | |
| GTATGAGTGGAGAGAGAAGG+CGG | - | chr3_1:24185058-24185077 | Msa0353690:CDS | 50.0% | |
| TCATCACCGTCATCACCGTA+CGG | + | chr3_1:24185231-24185250 | None:intergenic | 50.0% | |
| CCACATCAGCAGTGGTACAA+AGG | + | chr3_1:24185917-24185936 | None:intergenic | 50.0% | |
| CCTTTGTACCACTGCTGATG+TGG | - | chr3_1:24185914-24185933 | Msa0353690:intron | 50.0% | |
| CTGATGTGGCAGGGGTAATT+TGG | - | chr3_1:24185928-24185947 | Msa0353690:intron | 50.0% | |
| GAGAGAAGAGGAAGAGGAGA+AGG | + | chr3_1:24186036-24186055 | None:intergenic | 50.0% | |
| GCCAAAGAGAGAAGAGGAAG+AGG | + | chr3_1:24186042-24186061 | None:intergenic | 50.0% | |
| ! | AGGTGATAGAACGGCATCGA+CGG | + | chr3_1:24186075-24186094 | None:intergenic | 50.0% |
| !! | TCGATAGTGGGAGTTGATGG+AGG | + | chr3_1:24186095-24186114 | None:intergenic | 50.0% |
| GCTATCTCTCTCTCCGTTGA+AGG | - | chr3_1:24186188-24186207 | Msa0353690:intron | 50.0% | |
| CAAGGCTTGTGCTCTGTCTT+GGG | + | chr3_1:24187033-24187052 | None:intergenic | 50.0% | |
| !! | TGGATAGAGGCATTGAGTGG+TGG | - | chr3_1:24187122-24187141 | Msa0353690:intron | 50.0% |
| !! | GAGGCATTGAGTGGTGGAAT+TGG | - | chr3_1:24187128-24187147 | Msa0353690:intron | 50.0% |
| CAGAATTACATCGGGACACG+GGG | + | chr3_1:24187631-24187650 | None:intergenic | 50.0% | |
| TCCTGTCTGTGTAGGAACTC+TGG | - | chr3_1:24187726-24187745 | Msa0353690:intron | 50.0% | |
| ACTCTGGCAAAGTACACTGC+TGG | - | chr3_1:24187742-24187761 | Msa0353690:intron | 50.0% | |
| TCTCCCCATGAGTAGCTGAT+TGG | + | chr3_1:24187792-24187811 | None:intergenic | 50.0% | |
| ACCTCACAAGAGAGACTGCA+TGG | - | chr3_1:24187836-24187855 | Msa0353690:CDS | 50.0% | |
| CCTCACAAGAGAGACTGCAT+GGG | - | chr3_1:24187837-24187856 | Msa0353690:CDS | 50.0% | |
| ! | GGCGGATCCGGATTTGTTTC+AGG | - | chr3_1:24185002-24185021 | Msa0353690:CDS | 55.0% |
| CCATTCCCGTACGGTGATGA+CGG | - | chr3_1:24185222-24185241 | Msa0353690:intron | 55.0% | |
| CATCACCGTCATCACCGTAC+GGG | + | chr3_1:24185230-24185249 | None:intergenic | 55.0% | |
| TGTACCACTGCTGATGTGGC+AGG | - | chr3_1:24185918-24185937 | Msa0353690:intron | 55.0% | |
| GTACCACTGCTGATGTGGCA+GGG | - | chr3_1:24185919-24185938 | Msa0353690:intron | 55.0% | |
| TACCACTGCTGATGTGGCAG+GGG | - | chr3_1:24185920-24185939 | Msa0353690:intron | 55.0% | |
| GGTGAGGCCAAAGAGAGAAG+AGG | + | chr3_1:24186048-24186067 | None:intergenic | 55.0% | |
| ! | GGAGGAAATGGCGGAGAGAA+AGG | + | chr3_1:24186139-24186158 | None:intergenic | 55.0% |
| GCAAGGCTTGTGCTCTGTCT+TGG | + | chr3_1:24187034-24187053 | None:intergenic | 55.0% | |
| GCCAGAGTTCCTACACAGAC+AGG | + | chr3_1:24187730-24187749 | None:intergenic | 55.0% | |
| CCCATGCAGTCTCTCTTGTG+AGG | + | chr3_1:24187840-24187859 | None:intergenic | 55.0% | |
| GAGAGACTGCATGGGAAGCA+TGG | - | chr3_1:24187845-24187864 | Msa0353690:CDS | 55.0% | |
| TGAGTGGAGAGAGAAGGCGG+AGG | - | chr3_1:24185061-24185080 | Msa0353690:CDS | 60.0% | |
| GCGGAGGAGAGAGACACAAG+CGG | - | chr3_1:24185077-24185096 | Msa0353690:CDS | 60.0% | |
| CCGTCATCACCGTACGGGAA+TGG | + | chr3_1:24185225-24185244 | None:intergenic | 60.0% | |
| TACCCCTGCCACATCAGCAG+TGG | + | chr3_1:24185925-24185944 | None:intergenic | 60.0% | |
| !! | TAGAACGGCATCGACGGCGA+CGG | + | chr3_1:24186069-24186088 | None:intergenic | 60.0% |
| ! | GAGAGAGAGATAGCGGCCGT+CGG | + | chr3_1:24186182-24186201 | None:intergenic | 60.0% |
| CATCTCACCGGCCACGACCT+TGG | - | chr3_1:24184981-24185000 | Msa0353690:CDS | 65.0% | |
| ATCCGGATCCGCCAAGGTCG+TGG | + | chr3_1:24184995-24185014 | None:intergenic | 65.0% | |
| ! | AGAGAGATAGCGGCCGTCGG+AGG | + | chr3_1:24186179-24186198 | None:intergenic | 65.0% |
| CTCACCGGCCACGACCTTGG+CGG | - | chr3_1:24184984-24185003 | Msa0353690:CDS | 70.0% | |
| GGATCCGCCAAGGTCGTGGC+CGG | + | chr3_1:24184991-24185010 | None:intergenic | 70.0% | |
| ! | GGCCACGACCTTGGCGGATC+CGG | - | chr3_1:24184990-24185009 | Msa0353690:CDS | 70.0% |
| !! | CGGCATCGACGGCGACGGTG+AGG | + | chr3_1:24186064-24186083 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 24184954 | 24187900 | 24184954 | ID=Msa0353690;Name=Msa0353690 |
| chr3_1 | mRNA | 24184954 | 24187900 | 24184954 | ID=Msa0353690-mRNA-1;Parent=Msa0353690;Name=Msa0353690-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0|0|0.5|0.33|0.75|4|0|138 |
| chr3_1 | exon | 24187821 | 24187900 | 24187821 | ID=Msa0353690-mRNA-1:exon:5356;Parent=Msa0353690-mRNA-1 |
| chr3_1 | exon | 24187145 | 24187191 | 24187145 | ID=Msa0353690-mRNA-1:exon:5355;Parent=Msa0353690-mRNA-1 |
| chr3_1 | exon | 24185506 | 24185634 | 24185506 | ID=Msa0353690-mRNA-1:exon:5354;Parent=Msa0353690-mRNA-1 |
| chr3_1 | exon | 24184954 | 24185114 | 24184954 | ID=Msa0353690-mRNA-1:exon:5353;Parent=Msa0353690-mRNA-1 |
| chr3_1 | CDS | 24187821 | 24187900 | 24187821 | ID=Msa0353690-mRNA-1:cds;Parent=Msa0353690-mRNA-1 |
| chr3_1 | CDS | 24187145 | 24187191 | 24187145 | ID=Msa0353690-mRNA-1:cds;Parent=Msa0353690-mRNA-1 |
| chr3_1 | CDS | 24185506 | 24185634 | 24185506 | ID=Msa0353690-mRNA-1:cds;Parent=Msa0353690-mRNA-1 |
| chr3_1 | CDS | 24184954 | 24185114 | 24184954 | ID=Msa0353690-mRNA-1:cds;Parent=Msa0353690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
