Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639460 | GAU28754.1 | 56.522 | 184 | 71 | 8 | 24 | 200 | 1 | 182 | 2.98e-57 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639460 | sp|P80196|RNLX_SOLLC | 32.500 | 200 | 117 | 9 | 19 | 200 | 27 | 226 | 2.30e-26 | 104 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059770 | Msa0639460 | 0.806641 | 7.454145e-50 | -8.615850e-47 |
| Msa0627410 | Msa0639460 | 0.800737 | 1.252517e-48 | -8.615850e-47 |
| Msa0639460 | Msa0675510 | 0.813508 | 2.470453e-51 | -8.615850e-47 |
| Msa0639460 | Msa0682360 | 0.924498 | 6.503560e-90 | -8.615850e-47 |
| Msa0639460 | Msa0745110 | 0.845632 | 3.598027e-59 | -8.615850e-47 |
| Msa0639460 | Msa0782120 | 0.828469 | 8.836682e-55 | -8.615850e-47 |
| Msa0639460 | Msa0815320 | 0.823067 | 1.691264e-53 | -8.615850e-47 |
| Msa0639460 | Msa0819790 | 0.852060 | 5.914174e-61 | -8.615850e-47 |
| Msa0639460 | Msa0853550 | 0.803533 | 3.331036e-49 | -8.615850e-47 |
| Msa0639460 | Msa0865390 | 0.803214 | 3.878276e-49 | -8.615850e-47 |
| Msa0639460 | Msa0865780 | 0.801341 | 9.427345e-49 | -8.615850e-47 |
| Msa0639460 | Msa0892310 | 0.833186 | 6.161999e-56 | -8.615850e-47 |
| Msa0639460 | Msa0902020 | 0.842574 | 2.379748e-58 | -8.615850e-47 |
| Msa0639460 | Msa0909120 | 0.801029 | 1.091741e-48 | -8.615850e-47 |
| Msa0639460 | Msa0912370 | 0.801286 | 9.673161e-49 | -8.615850e-47 |
| Msa0639460 | Msa0912500 | 0.811977 | 5.345060e-51 | -8.615850e-47 |
| Msa0639460 | Msa0963310 | 0.816502 | 5.350847e-52 | -8.615850e-47 |
| Msa0639460 | Msa0999340 | 0.840221 | 9.907728e-58 | -8.615850e-47 |
| Msa0639460 | Msa0999350 | 0.833090 | 6.511761e-56 | -8.615850e-47 |
| Msa0639460 | Msa0999360 | 0.810655 | 1.034498e-50 | -8.615850e-47 |
| Msa0639460 | Msa0999390 | 0.836215 | 1.066105e-56 | -8.615850e-47 |
| Msa0639460 | Msa0999400 | 0.840825 | 6.884787e-58 | -8.615850e-47 |
| Msa0639460 | Msa0999410 | 0.825640 | 4.198753e-54 | -8.615850e-47 |
| Msa0639460 | Msa1034680 | 0.815263 | 1.011162e-51 | -8.615850e-47 |
| Msa0639460 | Msa1074480 | 0.842523 | 2.455015e-58 | -8.615850e-47 |
| Msa0639460 | Msa1084240 | 0.808041 | 3.764049e-50 | -8.615850e-47 |
| Msa0639460 | Msa1114990 | 0.818570 | 1.829726e-52 | -8.615850e-47 |
| Msa0639460 | Msa1131820 | 0.802557 | 5.303041e-49 | -8.615850e-47 |
| Msa0639460 | Msa1162040 | 0.814285 | 1.665720e-51 | -8.615850e-47 |
| Msa0639460 | Msa1228190 | 0.838623 | 2.575750e-57 | -8.615850e-47 |
| Msa0639460 | Msa1232060 | 0.800813 | 1.208273e-48 | -8.615850e-47 |
| Msa0639460 | Msa1243020 | 0.833636 | 4.758123e-56 | -8.615850e-47 |
| Msa0639460 | Msa1271260 | 0.833172 | 6.210900e-56 | -8.615850e-47 |
| Msa0639460 | Msa1288000 | 0.823081 | 1.678396e-53 | -8.615850e-47 |
| Msa0639460 | Msa1314280 | 0.802921 | 4.459504e-49 | -8.615850e-47 |
| Msa0639460 | Msa1339440 | 0.822291 | 2.563104e-53 | -8.615850e-47 |
| Msa0639460 | Msa1351420 | 0.812331 | 4.473875e-51 | -8.615850e-47 |
| Msa0639460 | Msa1379970 | 0.805553 | 1.262470e-49 | -8.615850e-47 |
| Msa0639460 | Msa1409770 | 0.818407 | 1.991770e-52 | -8.615850e-47 |
| Msa0639460 | Msa1435480 | 0.805663 | 1.197133e-49 | -8.615850e-47 |
| Msa0639460 | Msa1438250 | 0.803734 | 3.025740e-49 | -8.615850e-47 |
| Msa0639460 | Msa1458910 | 0.801877 | 7.317584e-49 | -8.615850e-47 |
| Msa0639460 | Msa1463140 | 0.807682 | 4.486219e-50 | -8.615850e-47 |
| Msa0145250 | Msa0639460 | 0.835817 | 1.345342e-56 | -8.615850e-47 |
| Msa0366580 | Msa0639460 | 0.804849 | 1.773062e-49 | -8.615850e-47 |
| Msa0366900 | Msa0639460 | 0.819718 | 1.002677e-52 | -8.615850e-47 |
| Msa0373960 | Msa0639460 | 0.807129 | 5.875969e-50 | -8.615850e-47 |
| Msa0431500 | Msa0639460 | 0.813619 | 2.334836e-51 | -8.615850e-47 |
| Msa0456200 | Msa0639460 | 0.806911 | 6.536154e-50 | -8.615850e-47 |
| Msa0242540 | Msa0639460 | 0.820356 | 7.163451e-53 | -8.615850e-47 |
| Msa0252770 | Msa0639460 | 0.802577 | 5.253062e-49 | -8.615850e-47 |
| Msa0280750 | Msa0639460 | 0.830779 | 2.422914e-55 | -8.615850e-47 |
| Msa0329620 | Msa0639460 | 0.814210 | 1.730553e-51 | -8.615850e-47 |
| Msa0331540 | Msa0639460 | 0.804998 | 1.650097e-49 | -8.615850e-47 |
| Msa0353190 | Msa0639460 | 0.807917 | 3.998078e-50 | -8.615850e-47 |
| Msa0353690 | Msa0639460 | 0.840147 | 1.035611e-57 | -8.615850e-47 |
| Msa0360900 | Msa0639460 | 0.818739 | 1.675061e-52 | -8.615850e-47 |
| Msa0546710 | Msa0639460 | 0.869047 | 4.147199e-66 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639460 | MtrunA17_Chr4g0028501 | 39.791 | 191 | 107 | 5 | 19 | 204 | 20 | 207 | 4.69e-44 | 146 |
| Msa0639460 | MtrunA17_Chr3g0089091 | 34.359 | 195 | 114 | 9 | 20 | 200 | 79 | 273 | 2.47e-30 | 112 |
| Msa0639460 | MtrunA17_Chr3g0089081 | 34.872 | 195 | 113 | 9 | 20 | 200 | 70 | 264 | 2.53e-30 | 112 |
| Msa0639460 | MtrunA17_Chr2g0287471 | 36.000 | 175 | 98 | 7 | 26 | 189 | 163 | 334 | 4.46e-28 | 108 |
| Msa0639460 | MtrunA17_Chr6g0479301 | 35.122 | 205 | 110 | 9 | 18 | 199 | 76 | 280 | 5.78e-28 | 106 |
| Msa0639460 | MtrunA17_Chr5g0417341 | 33.663 | 202 | 114 | 10 | 19 | 200 | 27 | 228 | 1.23e-27 | 104 |
| Msa0639460 | MtrunA17_Chr5g0417371 | 32.287 | 223 | 129 | 12 | 1 | 202 | 6 | 227 | 1.41e-27 | 104 |
| Msa0639460 | MtrunA17_Chr2g0287541 | 30.366 | 191 | 123 | 7 | 16 | 199 | 3 | 190 | 1.19e-25 | 98.2 |
| Msa0639460 | MtrunA17_Chr2g0287571 | 31.492 | 181 | 116 | 5 | 15 | 189 | 8 | 186 | 1.59e-25 | 98.2 |
| Msa0639460 | MtrunA17_Chr5g0417321 | 32.500 | 200 | 117 | 11 | 19 | 200 | 27 | 226 | 1.64e-25 | 99.0 |
| Msa0639460 | MtrunA17_Chr6g0479341 | 30.846 | 201 | 120 | 8 | 18 | 199 | 69 | 269 | 1.35e-24 | 97.4 |
| Msa0639460 | MtrunA17_Chr5g0439761 | 33.505 | 194 | 115 | 9 | 21 | 200 | 21 | 214 | 1.45e-23 | 93.6 |
| Msa0639460 | MtrunA17_Chr1g0170111 | 34.171 | 199 | 104 | 11 | 18 | 193 | 102 | 296 | 1.43e-22 | 92.8 |
| Msa0639460 | MtrunA17_Chr8g0350611 | 33.175 | 211 | 113 | 10 | 12 | 200 | 95 | 299 | 4.13e-22 | 91.3 |
| Msa0639460 | MtrunA17_Chr6g0483091 | 32.212 | 208 | 120 | 11 | 2 | 189 | 7 | 213 | 8.75e-22 | 89.0 |
| Msa0639460 | MtrunA17_Chr8g0339941 | 33.333 | 186 | 100 | 10 | 19 | 187 | 415 | 593 | 5.00e-21 | 90.5 |
| Msa0639460 | MtrunA17_Chr5g0417391 | 30.088 | 226 | 133 | 12 | 1 | 201 | 3 | 228 | 1.89e-20 | 85.5 |
| Msa0639460 | MtrunA17_Chr2g0287561 | 37.168 | 113 | 65 | 4 | 85 | 193 | 27 | 137 | 9.22e-20 | 81.6 |
| Msa0639460 | MtrunA17_Chr5g0417381 | 28.571 | 217 | 136 | 11 | 3 | 201 | 12 | 227 | 1.02e-19 | 83.6 |
| Msa0639460 | MtrunA17_Chr8g0347611 | 29.224 | 219 | 118 | 8 | 19 | 203 | 42 | 257 | 2.13e-17 | 78.2 |
| Msa0639460 | MtrunA17_Chr5g0417401 | 27.363 | 201 | 128 | 10 | 19 | 201 | 27 | 227 | 4.88e-14 | 68.2 |
| Msa0639460 | MtrunA17_Chr2g0333421 | 31.579 | 133 | 72 | 7 | 77 | 202 | 8 | 128 | 3.44e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639460 | AT2G02990.1 | 32.110 | 218 | 130 | 10 | 1 | 200 | 11 | 228 | 4.04e-24 | 95.5 |
| Msa0639460 | AT1G26820.1 | 29.091 | 220 | 135 | 11 | 4 | 202 | 3 | 222 | 1.37e-22 | 91.3 |
| Msa0639460 | AT2G39780.1 | 27.273 | 220 | 128 | 8 | 11 | 201 | 23 | 239 | 3.28e-20 | 85.9 |
| Msa0639460 | AT1G14220.1 | 29.680 | 219 | 134 | 11 | 1 | 199 | 7 | 225 | 1.52e-19 | 83.6 |
Find 56 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATCTTTGATGTCATTT+AGG | 0.156708 | 4_3:+35363814 | None:intergenic |
| GTCTCATTTGTGCAATGATA+TGG | 0.225299 | 4_3:+35364094 | None:intergenic |
| AAGATCTTTGATGTCATTTA+GGG | 0.233880 | 4_3:+35363815 | None:intergenic |
| CCACAATTTGTACGAGTATT+AGG | 0.235629 | 4_3:+35363624 | None:intergenic |
| CATTTAGGGCATACAAATCT+AGG | 0.293125 | 4_3:+35363829 | None:intergenic |
| GTTATTGTTCTCTTTGTTGC+TGG | 0.313075 | 4_3:-35364272 | Msa0639460:CDS |
| CGGGAAACAACTCTGACTTT+TGG | 0.314940 | 4_3:-35363917 | Msa0639460:CDS |
| TGCCCGGGATTGATAAGATT+TGG | 0.330378 | 4_3:-35363950 | Msa0639460:CDS |
| TAACTTTATTTAATAACTTC+TGG | 0.331114 | 4_3:+35363585 | None:intergenic |
| GTAGTAGTCAAAGTTTATTT+TGG | 0.342077 | 4_3:+35364231 | None:intergenic |
| GTTAATAAAATTATATATGA+TGG | 0.387686 | 4_3:-35363566 | Msa0639460:three_prime_UTR |
| TTATTATCACAATGAAGCTT+AGG | 0.393545 | 4_3:+35363711 | None:intergenic |
| TACCAGCTTGATCCATTGCC+CGG | 0.424603 | 4_3:-35363966 | Msa0639460:intron |
| TTTGTGCAATGATATGGGTT+AGG | 0.440239 | 4_3:+35364100 | None:intergenic |
| GAGTTGTTTCCCGTTAGATT+CGG | 0.449794 | 4_3:+35363927 | None:intergenic |
| GTAATCGTATGGTGACATAT+TGG | 0.450909 | 4_3:+35363863 | None:intergenic |
| TATTATCACAATGAAGCTTA+GGG | 0.458506 | 4_3:+35363712 | None:intergenic |
| AAGAGAACAATAACGACATA+AGG | 0.465778 | 4_3:+35364281 | None:intergenic |
| AACTTTAACACCTGGTGGAT+CGG | 0.470033 | 4_3:-35363784 | Msa0639460:CDS |
| AAGATTTGGCCGAATCTAAC+GGG | 0.475239 | 4_3:-35363936 | Msa0639460:CDS |
| CTTAATAAAACTTTAACACC+TGG | 0.479447 | 4_3:-35363792 | Msa0639460:CDS |
| CGGCCAAATCTTATCAATCC+CGG | 0.483167 | 4_3:+35363947 | None:intergenic |
| ATCGAGAGTGCTATAAAGTT+AGG | 0.484561 | 4_3:-35363747 | Msa0639460:CDS |
| GTTGGTTATTACTATTGTGT+GGG | 0.494348 | 4_3:-35363544 | Msa0639460:three_prime_UTR |
| CTAAATAAATATGGAGGAGA+CGG | 0.501939 | 4_3:-35363473 | Msa0639460:three_prime_UTR |
| TCTCATTTGTGCAATGATAT+GGG | 0.503124 | 4_3:+35364095 | None:intergenic |
| ATAAAATTATATATGATGGT+TGG | 0.504489 | 4_3:-35363562 | Msa0639460:three_prime_UTR |
| CCTAATACTCGTACAAATTG+TGG | 0.510006 | 4_3:-35363624 | Msa0639460:CDS |
| GGTTGGTTATTACTATTGTG+TGG | 0.512296 | 4_3:-35363545 | Msa0639460:three_prime_UTR |
| ATCTTATCAATCCCGGGCAA+TGG | 0.515207 | 4_3:+35363954 | None:intergenic |
| ATTTCAGCATCCACGGATTG+TGG | 0.518420 | 4_3:-35364141 | Msa0639460:CDS |
| TCTGCTTCAATACCACCAAC+AGG | 0.519484 | 4_3:-35363659 | Msa0639460:CDS |
| TGTTCTGCGGCCACAATCCG+TGG | 0.527412 | 4_3:+35364131 | None:intergenic |
| TAAGATTTGGCCGAATCTAA+CGG | 0.533520 | 4_3:-35363937 | Msa0639460:CDS |
| CCTCAAAATTTCAGCATCCA+CGG | 0.533572 | 4_3:-35364148 | Msa0639460:CDS |
| GGCCAAATCTTATCAATCCC+GGG | 0.549058 | 4_3:+35363948 | None:intergenic |
| AATAAAACTTTAACACCTGG+TGG | 0.549310 | 4_3:-35363789 | Msa0639460:CDS |
| ATAAATATGGAGGAGACGGA+GGG | 0.564155 | 4_3:-35363469 | Msa0639460:three_prime_UTR |
| ATGAAGCTTAGGGTTAGATC+CGG | 0.566541 | 4_3:+35363722 | None:intergenic |
| AATAAATATGGAGGAGACGG+AGG | 0.573129 | 4_3:-35363470 | Msa0639460:three_prime_UTR |
| ACCAGCTTGATCCATTGCCC+GGG | 0.575199 | 4_3:-35363965 | Msa0639460:intron |
| ATTTAGGGCATACAAATCTA+GGG | 0.575925 | 4_3:+35363830 | None:intergenic |
| GCTTTCGTCGCCGATCCACC+AGG | 0.584621 | 4_3:+35363774 | None:intergenic |
| GATTGTGGCCGCAGAACAAG+AGG | 0.588738 | 4_3:-35364126 | Msa0639460:CDS |
| AGGACAACTTATATACCTGT+TGG | 0.591332 | 4_3:+35363644 | None:intergenic |
| ACAACTTATATACCTGTTGG+TGG | 0.612648 | 4_3:+35363647 | None:intergenic |
| GCAAGCTCGAAGTAATCGTA+TGG | 0.614270 | 4_3:+35363852 | None:intergenic |
| TTAGGCTTCCTCTTGTTCTG+CGG | 0.625435 | 4_3:+35364118 | None:intergenic |
| AGTGCTATAAAGTTAGGCAC+CGG | 0.626348 | 4_3:-35363741 | Msa0639460:CDS |
| TCATTGCACAAATGAGACAC+TGG | 0.631016 | 4_3:-35364089 | Msa0639460:CDS |
| TGAGACACTGGAGCCGCATG+TGG | 0.638823 | 4_3:-35364077 | Msa0639460:intron |
| TCGAGATAGCATACCACATG+CGG | 0.641657 | 4_3:+35364064 | None:intergenic |
| ACTACATGCTAGCAGAAACA+TGG | 0.642833 | 4_3:-35364213 | Msa0639460:CDS |
| GCTTACGAGTGGAAGATACA+TGG | 0.644977 | 4_3:-35363894 | Msa0639460:CDS |
| TAAATATGGAGGAGACGGAG+GGG | 0.657667 | 4_3:-35363468 | Msa0639460:three_prime_UTR |
| TAACTTTATAGCACTCTCGA+TGG | 0.706282 | 4_3:+35363749 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAATAAAAAATAACAAA+AGG | + | chr4_3:35363455-35363474 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTTTATTTCTT+TGG | - | chr4_3:35363455-35363474 | Msa0639460:three_prime_UTR | 10.0% |
| !!! | ATTTTACTATTTTTATCTTA+TGG | - | chr4_3:35363741-35363760 | Msa0639460:CDS | 10.0% |
| !! | GTTAATAAAATTATATATGA+TGG | - | chr4_3:35364203-35364222 | Msa0639460:CDS | 10.0% |
| !!! | ATATGTTTTCTAAATAAATA+TGG | - | chr4_3:35364287-35364306 | Msa0639460:exon | 10.0% |
| !! | AAGAAATAAAAAATAACAAA+AGG | + | chr4_3:35363455-35363474 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTTTATTTCTT+TGG | - | chr4_3:35363455-35363474 | Msa0639460:three_prime_UTR | 10.0% |
| !!! | ATTTTACTATTTTTATCTTA+TGG | - | chr4_3:35363741-35363760 | Msa0639460:CDS | 10.0% |
| !! | GTTAATAAAATTATATATGA+TGG | - | chr4_3:35364203-35364222 | Msa0639460:CDS | 10.0% |
| !!! | ATATGTTTTCTAAATAAATA+TGG | - | chr4_3:35364287-35364306 | Msa0639460:exon | 10.0% |
| !! | ATAGTAAAATCAAAGATAAT+TGG | + | chr4_3:35363731-35363750 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTAATAACTTC+TGG | + | chr4_3:35364187-35364206 | None:intergenic | 15.0% |
| !! | ATAAAATTATATATGATGGT+TGG | - | chr4_3:35364207-35364226 | Msa0639460:CDS | 15.0% |
| !! | AAAAAATAACAAAAGGAAAT+TGG | + | chr4_3:35363448-35363467 | None:intergenic | 15.0% |
| !! | ATAGTAAAATCAAAGATAAT+TGG | + | chr4_3:35363731-35363750 | None:intergenic | 15.0% |
| !!! | TAACTTTATTTAATAACTTC+TGG | + | chr4_3:35364187-35364206 | None:intergenic | 15.0% |
| !! | ATAAAATTATATATGATGGT+TGG | - | chr4_3:35364207-35364226 | Msa0639460:CDS | 15.0% |
| !!! | TGAAATTTTGAGGTATATTA+GGG | + | chr4_3:35363614-35363633 | None:intergenic | 20.0% |
| !! | TAAAAACTCTAGTAATTTGA+TGG | - | chr4_3:35364078-35364097 | Msa0639460:CDS | 20.0% |
| !!! | TGTTTTCTAAATAAATATGG+AGG | - | chr4_3:35364290-35364309 | Msa0639460:exon | 20.0% |
| !!! | TGAAATTTTGAGGTATATTA+GGG | + | chr4_3:35363614-35363633 | None:intergenic | 20.0% |
| !! | TAAAAACTCTAGTAATTTGA+TGG | - | chr4_3:35364078-35364097 | Msa0639460:CDS | 20.0% |
| !!! | TGTTTTCTAAATAAATATGG+AGG | - | chr4_3:35364290-35364309 | Msa0639460:exon | 20.0% |
| !! | GTAGTAGTCAAAGTTTATTT+TGG | + | chr4_3:35363541-35363560 | None:intergenic | 25.0% |
| !! | GATTTGTTTAGACAAAAAGT+TGG | + | chr4_3:35363585-35363604 | None:intergenic | 25.0% |
| !!! | CTGAAATTTTGAGGTATATT+AGG | + | chr4_3:35363615-35363634 | None:intergenic | 25.0% |
| !!! | CTATTTTTATCTTATGGTGT+TGG | - | chr4_3:35363747-35363766 | Msa0639460:CDS | 25.0% |
| !! | AAGATCTTTGATGTCATTTA+GGG | + | chr4_3:35363957-35363976 | None:intergenic | 25.0% |
| ! | CTTAATAAAACTTTAACACC+TGG | - | chr4_3:35363977-35363996 | Msa0639460:intron | 25.0% |
| ! | TATTATCACAATGAAGCTTA+GGG | + | chr4_3:35364060-35364079 | None:intergenic | 25.0% |
| ! | TTATTATCACAATGAAGCTT+AGG | + | chr4_3:35364061-35364080 | None:intergenic | 25.0% |
| !! | GTAGTAGTCAAAGTTTATTT+TGG | + | chr4_3:35363541-35363560 | None:intergenic | 25.0% |
| !! | GATTTGTTTAGACAAAAAGT+TGG | + | chr4_3:35363585-35363604 | None:intergenic | 25.0% |
| !!! | CTGAAATTTTGAGGTATATT+AGG | + | chr4_3:35363615-35363634 | None:intergenic | 25.0% |
| !!! | CTATTTTTATCTTATGGTGT+TGG | - | chr4_3:35363747-35363766 | Msa0639460:CDS | 25.0% |
| !! | AAGATCTTTGATGTCATTTA+GGG | + | chr4_3:35363957-35363976 | None:intergenic | 25.0% |
| ! | CTTAATAAAACTTTAACACC+TGG | - | chr4_3:35363977-35363996 | Msa0639460:intron | 25.0% |
| ! | TATTATCACAATGAAGCTTA+GGG | + | chr4_3:35364060-35364079 | None:intergenic | 25.0% |
| ! | TTATTATCACAATGAAGCTT+AGG | + | chr4_3:35364061-35364080 | None:intergenic | 25.0% |
| AAGAGAACAATAACGACATA+AGG | + | chr4_3:35363491-35363510 | None:intergenic | 30.0% | |
| TTGTTTAGACAAAAAGTTGG+TGG | + | chr4_3:35363582-35363601 | None:intergenic | 30.0% | |
| TCTCATTTGTGCAATGATAT+GGG | + | chr4_3:35363677-35363696 | None:intergenic | 30.0% | |
| ! | ATTTAGGGCATACAAATCTA+GGG | + | chr4_3:35363942-35363961 | None:intergenic | 30.0% |
| ! | GAAGATCTTTGATGTCATTT+AGG | + | chr4_3:35363958-35363977 | None:intergenic | 30.0% |
| AATAAAACTTTAACACCTGG+TGG | - | chr4_3:35363980-35363999 | Msa0639460:intron | 30.0% | |
| GTTGGTTATTACTATTGTGT+GGG | - | chr4_3:35364225-35364244 | Msa0639460:CDS | 30.0% | |
| CTAAATAAATATGGAGGAGA+CGG | - | chr4_3:35364296-35364315 | Msa0639460:exon | 30.0% | |
| AAGAGAACAATAACGACATA+AGG | + | chr4_3:35363491-35363510 | None:intergenic | 30.0% | |
| TTGTTTAGACAAAAAGTTGG+TGG | + | chr4_3:35363582-35363601 | None:intergenic | 30.0% | |
| TCTCATTTGTGCAATGATAT+GGG | + | chr4_3:35363677-35363696 | None:intergenic | 30.0% | |
| ! | ATTTAGGGCATACAAATCTA+GGG | + | chr4_3:35363942-35363961 | None:intergenic | 30.0% |
| ! | GAAGATCTTTGATGTCATTT+AGG | + | chr4_3:35363958-35363977 | None:intergenic | 30.0% |
| AATAAAACTTTAACACCTGG+TGG | - | chr4_3:35363980-35363999 | Msa0639460:intron | 30.0% | |
| GTTGGTTATTACTATTGTGT+GGG | - | chr4_3:35364225-35364244 | Msa0639460:CDS | 30.0% | |
| CTAAATAAATATGGAGGAGA+CGG | - | chr4_3:35364296-35364315 | Msa0639460:exon | 30.0% | |
| GTTATTGTTCTCTTTGTTGC+TGG | - | chr4_3:35363497-35363516 | Msa0639460:three_prime_UTR | 35.0% | |
| TTTGTGCAATGATATGGGTT+AGG | + | chr4_3:35363672-35363691 | None:intergenic | 35.0% | |
| GTCTCATTTGTGCAATGATA+TGG | + | chr4_3:35363678-35363697 | None:intergenic | 35.0% | |
| TAAGATTTGGCCGAATCTAA+CGG | - | chr4_3:35363832-35363851 | Msa0639460:CDS | 35.0% | |
| GTAATCGTATGGTGACATAT+TGG | + | chr4_3:35363909-35363928 | None:intergenic | 35.0% | |
| ! | CATTTAGGGCATACAAATCT+AGG | + | chr4_3:35363943-35363962 | None:intergenic | 35.0% |
| TAACTTTATAGCACTCTCGA+TGG | + | chr4_3:35364023-35364042 | None:intergenic | 35.0% | |
| !! | ATCGAGAGTGCTATAAAGTT+AGG | - | chr4_3:35364022-35364041 | Msa0639460:intron | 35.0% |
| ACAACTTATATACCTGTTGG+TGG | + | chr4_3:35364125-35364144 | None:intergenic | 35.0% | |
| AGGACAACTTATATACCTGT+TGG | + | chr4_3:35364128-35364147 | None:intergenic | 35.0% | |
| CCACAATTTGTACGAGTATT+AGG | + | chr4_3:35364148-35364167 | None:intergenic | 35.0% | |
| CCTAATACTCGTACAAATTG+TGG | - | chr4_3:35364145-35364164 | Msa0639460:CDS | 35.0% | |
| ! | GGTTGGTTATTACTATTGTG+TGG | - | chr4_3:35364224-35364243 | Msa0639460:CDS | 35.0% |
| GTTATTGTTCTCTTTGTTGC+TGG | - | chr4_3:35363497-35363516 | Msa0639460:three_prime_UTR | 35.0% | |
| TTTGTGCAATGATATGGGTT+AGG | + | chr4_3:35363672-35363691 | None:intergenic | 35.0% | |
| GTCTCATTTGTGCAATGATA+TGG | + | chr4_3:35363678-35363697 | None:intergenic | 35.0% | |
| TAAGATTTGGCCGAATCTAA+CGG | - | chr4_3:35363832-35363851 | Msa0639460:CDS | 35.0% | |
| GTAATCGTATGGTGACATAT+TGG | + | chr4_3:35363909-35363928 | None:intergenic | 35.0% | |
| ! | CATTTAGGGCATACAAATCT+AGG | + | chr4_3:35363943-35363962 | None:intergenic | 35.0% |
| TAACTTTATAGCACTCTCGA+TGG | + | chr4_3:35364023-35364042 | None:intergenic | 35.0% | |
| !! | ATCGAGAGTGCTATAAAGTT+AGG | - | chr4_3:35364022-35364041 | Msa0639460:intron | 35.0% |
| ACAACTTATATACCTGTTGG+TGG | + | chr4_3:35364125-35364144 | None:intergenic | 35.0% | |
| AGGACAACTTATATACCTGT+TGG | + | chr4_3:35364128-35364147 | None:intergenic | 35.0% | |
| CCACAATTTGTACGAGTATT+AGG | + | chr4_3:35364148-35364167 | None:intergenic | 35.0% | |
| CCTAATACTCGTACAAATTG+TGG | - | chr4_3:35364145-35364164 | Msa0639460:CDS | 35.0% | |
| ! | GGTTGGTTATTACTATTGTG+TGG | - | chr4_3:35364224-35364243 | Msa0639460:CDS | 35.0% |
| ACTACATGCTAGCAGAAACA+TGG | - | chr4_3:35363556-35363575 | Msa0639460:three_prime_UTR | 40.0% | |
| CCTCAAAATTTCAGCATCCA+CGG | - | chr4_3:35363621-35363640 | Msa0639460:CDS | 40.0% | |
| TCATTGCACAAATGAGACAC+TGG | - | chr4_3:35363680-35363699 | Msa0639460:CDS | 40.0% | |
| AAGATTTGGCCGAATCTAAC+GGG | - | chr4_3:35363833-35363852 | Msa0639460:CDS | 40.0% | |
| ! | GAGTTGTTTCCCGTTAGATT+CGG | + | chr4_3:35363845-35363864 | None:intergenic | 40.0% |
| ! | GGGAAACAACTCTGACTTTT+GGG | - | chr4_3:35363853-35363872 | Msa0639460:CDS | 40.0% |
| ! | AACTTTAACACCTGGTGGAT+CGG | - | chr4_3:35363985-35364004 | Msa0639460:intron | 40.0% |
| AGTGCTATAAAGTTAGGCAC+CGG | - | chr4_3:35364028-35364047 | Msa0639460:intron | 40.0% | |
| ATGAAGCTTAGGGTTAGATC+CGG | + | chr4_3:35364050-35364069 | None:intergenic | 40.0% | |
| AATAAATATGGAGGAGACGG+AGG | - | chr4_3:35364299-35364318 | Msa0639460:exon | 40.0% | |
| ATAAATATGGAGGAGACGGA+GGG | - | chr4_3:35364300-35364319 | Msa0639460:five_prime_UTR | 40.0% | |
| ACTACATGCTAGCAGAAACA+TGG | - | chr4_3:35363556-35363575 | Msa0639460:three_prime_UTR | 40.0% | |
| CCTCAAAATTTCAGCATCCA+CGG | - | chr4_3:35363621-35363640 | Msa0639460:CDS | 40.0% | |
| TCATTGCACAAATGAGACAC+TGG | - | chr4_3:35363680-35363699 | Msa0639460:CDS | 40.0% | |
| AAGATTTGGCCGAATCTAAC+GGG | - | chr4_3:35363833-35363852 | Msa0639460:CDS | 40.0% | |
| ! | GAGTTGTTTCCCGTTAGATT+CGG | + | chr4_3:35363845-35363864 | None:intergenic | 40.0% |
| ! | GGGAAACAACTCTGACTTTT+GGG | - | chr4_3:35363853-35363872 | Msa0639460:CDS | 40.0% |
| ! | AACTTTAACACCTGGTGGAT+CGG | - | chr4_3:35363985-35364004 | Msa0639460:intron | 40.0% |
| AGTGCTATAAAGTTAGGCAC+CGG | - | chr4_3:35364028-35364047 | Msa0639460:intron | 40.0% | |
| ATGAAGCTTAGGGTTAGATC+CGG | + | chr4_3:35364050-35364069 | None:intergenic | 40.0% | |
| AATAAATATGGAGGAGACGG+AGG | - | chr4_3:35364299-35364318 | Msa0639460:exon | 40.0% | |
| ATAAATATGGAGGAGACGGA+GGG | - | chr4_3:35364300-35364319 | Msa0639460:five_prime_UTR | 40.0% | |
| ! | CCGTGGATGCTGAAATTTTG+AGG | + | chr4_3:35363624-35363643 | None:intergenic | 45.0% |
| ! | ATTTCAGCATCCACGGATTG+TGG | - | chr4_3:35363628-35363647 | Msa0639460:CDS | 45.0% |
| TTAGGCTTCCTCTTGTTCTG+CGG | + | chr4_3:35363654-35363673 | None:intergenic | 45.0% | |
| TCGAGATAGCATACCACATG+CGG | + | chr4_3:35363708-35363727 | None:intergenic | 45.0% | |
| ATCTTATCAATCCCGGGCAA+TGG | + | chr4_3:35363818-35363837 | None:intergenic | 45.0% | |
| TGCCCGGGATTGATAAGATT+TGG | - | chr4_3:35363819-35363838 | Msa0639460:CDS | 45.0% | |
| GGCCAAATCTTATCAATCCC+GGG | + | chr4_3:35363824-35363843 | None:intergenic | 45.0% | |
| CGGCCAAATCTTATCAATCC+CGG | + | chr4_3:35363825-35363844 | None:intergenic | 45.0% | |
| ! | CGGGAAACAACTCTGACTTT+TGG | - | chr4_3:35363852-35363871 | Msa0639460:CDS | 45.0% |
| GCTTACGAGTGGAAGATACA+TGG | - | chr4_3:35363875-35363894 | Msa0639460:CDS | 45.0% | |
| GCAAGCTCGAAGTAATCGTA+TGG | + | chr4_3:35363920-35363939 | None:intergenic | 45.0% | |
| TCTGCTTCAATACCACCAAC+AGG | - | chr4_3:35364110-35364129 | Msa0639460:CDS | 45.0% | |
| TAAATATGGAGGAGACGGAG+GGG | - | chr4_3:35364301-35364320 | Msa0639460:five_prime_UTR | 45.0% | |
| ! | CCGTGGATGCTGAAATTTTG+AGG | + | chr4_3:35363624-35363643 | None:intergenic | 45.0% |
| ! | ATTTCAGCATCCACGGATTG+TGG | - | chr4_3:35363628-35363647 | Msa0639460:CDS | 45.0% |
| TTAGGCTTCCTCTTGTTCTG+CGG | + | chr4_3:35363654-35363673 | None:intergenic | 45.0% | |
| TCGAGATAGCATACCACATG+CGG | + | chr4_3:35363708-35363727 | None:intergenic | 45.0% | |
| ATCTTATCAATCCCGGGCAA+TGG | + | chr4_3:35363818-35363837 | None:intergenic | 45.0% | |
| TGCCCGGGATTGATAAGATT+TGG | - | chr4_3:35363819-35363838 | Msa0639460:CDS | 45.0% | |
| GGCCAAATCTTATCAATCCC+GGG | + | chr4_3:35363824-35363843 | None:intergenic | 45.0% | |
| CGGCCAAATCTTATCAATCC+CGG | + | chr4_3:35363825-35363844 | None:intergenic | 45.0% | |
| ! | CGGGAAACAACTCTGACTTT+TGG | - | chr4_3:35363852-35363871 | Msa0639460:CDS | 45.0% |
| GCTTACGAGTGGAAGATACA+TGG | - | chr4_3:35363875-35363894 | Msa0639460:CDS | 45.0% | |
| GCAAGCTCGAAGTAATCGTA+TGG | + | chr4_3:35363920-35363939 | None:intergenic | 45.0% | |
| TCTGCTTCAATACCACCAAC+AGG | - | chr4_3:35364110-35364129 | Msa0639460:CDS | 45.0% | |
| TAAATATGGAGGAGACGGAG+GGG | - | chr4_3:35364301-35364320 | Msa0639460:five_prime_UTR | 45.0% | |
| TACCAGCTTGATCCATTGCC+CGG | - | chr4_3:35363803-35363822 | Msa0639460:CDS | 50.0% | |
| ! | CTGACTTTTGGGCTTACGAG+TGG | - | chr4_3:35363864-35363883 | Msa0639460:CDS | 50.0% |
| TACCAGCTTGATCCATTGCC+CGG | - | chr4_3:35363803-35363822 | Msa0639460:CDS | 50.0% | |
| ! | CTGACTTTTGGGCTTACGAG+TGG | - | chr4_3:35363864-35363883 | Msa0639460:CDS | 50.0% |
| GATTGTGGCCGCAGAACAAG+AGG | - | chr4_3:35363643-35363662 | Msa0639460:CDS | 55.0% | |
| ACCAGCTTGATCCATTGCCC+GGG | - | chr4_3:35363804-35363823 | Msa0639460:CDS | 55.0% | |
| GATTGTGGCCGCAGAACAAG+AGG | - | chr4_3:35363643-35363662 | Msa0639460:CDS | 55.0% | |
| ACCAGCTTGATCCATTGCCC+GGG | - | chr4_3:35363804-35363823 | Msa0639460:CDS | 55.0% | |
| TGTTCTGCGGCCACAATCCG+TGG | + | chr4_3:35363641-35363660 | None:intergenic | 60.0% | |
| TGAGACACTGGAGCCGCATG+TGG | - | chr4_3:35363692-35363711 | Msa0639460:CDS | 60.0% | |
| TCCCGGGCAATGGATCAAGC+TGG | + | chr4_3:35363808-35363827 | None:intergenic | 60.0% | |
| TGTTCTGCGGCCACAATCCG+TGG | + | chr4_3:35363641-35363660 | None:intergenic | 60.0% | |
| TGAGACACTGGAGCCGCATG+TGG | - | chr4_3:35363692-35363711 | Msa0639460:CDS | 60.0% | |
| TCCCGGGCAATGGATCAAGC+TGG | + | chr4_3:35363808-35363827 | None:intergenic | 60.0% | |
| GCTTTCGTCGCCGATCCACC+AGG | + | chr4_3:35363998-35364017 | None:intergenic | 65.0% | |
| GCTTTCGTCGCCGATCCACC+AGG | + | chr4_3:35363998-35364017 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 35363447 | 35364344 | 35363447 | ID=Msa0639460;Name=Msa0639460 |
| chr4_3 | mRNA | 35363447 | 35364344 | 35363447 | ID=Msa0639460-mRNA-1;Parent=Msa0639460;Name=Msa0639460-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|143|204 |
| chr4_3 | exon | 35363447 | 35363982 | 35363447 | ID=Msa0639460-mRNA-1:exon:8290;Parent=Msa0639460-mRNA-1 |
| chr4_3 | exon | 35364078 | 35364344 | 35364078 | ID=Msa0639460-mRNA-1:exon:8289;Parent=Msa0639460-mRNA-1 |
| chr4_3 | five_prime_UTR | 35364300 | 35364344 | 35364300 | ID=Msa0639460-mRNA-1:five_prime_utr;Parent=Msa0639460-mRNA-1 |
| chr4_3 | CDS | 35364078 | 35364299 | 35364078 | ID=Msa0639460-mRNA-1:cds;Parent=Msa0639460-mRNA-1 |
| chr4_3 | CDS | 35363590 | 35363982 | 35363590 | ID=Msa0639460-mRNA-1:cds;Parent=Msa0639460-mRNA-1 |
| chr4_3 | three_prime_UTR | 35363447 | 35363589 | 35363447 | ID=Msa0639460-mRNA-1:three_prime_utr;Parent=Msa0639460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
