Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060680 | XP_013466509.1 | 97.861 | 374 | 8 | 0 | 1 | 374 | 1 | 374 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060680 | sp|Q9ZU32|NADC_ARATH | 75.637 | 353 | 77 | 2 | 22 | 374 | 5 | 348 | 0.0 | 546 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060680 | A0A072VQY4 | 97.861 | 374 | 8 | 0 | 1 | 374 | 1 | 374 | 0.0 | 749 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011850 | Msa0060680 | 0.905406 | 4.441605e-80 | -8.615850e-47 |
| Msa0060680 | Msa0139740 | 0.801673 | 8.058661e-49 | -8.615850e-47 |
| Msa0060680 | Msa0601710 | 0.808793 | 2.600897e-50 | -8.615850e-47 |
| Msa0060680 | Msa1030280 | 0.804180 | 2.444662e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060680 | MtrunA17_Chr1g0160301 | 97.861 | 374 | 8 | 0 | 1 | 374 | 1 | 374 | 0.0 | 749 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060680 | AT2G01350.1 | 75.637 | 353 | 77 | 2 | 22 | 374 | 5 | 348 | 0.0 | 546 |
| Msa0060680 | AT2G01350.4 | 80.952 | 315 | 60 | 0 | 60 | 374 | 13 | 327 | 0.0 | 539 |
| Msa0060680 | AT2G01350.3 | 74.788 | 353 | 74 | 3 | 22 | 374 | 5 | 342 | 0.0 | 531 |
| Msa0060680 | AT2G01350.2 | 81.851 | 281 | 51 | 0 | 94 | 374 | 1 | 281 | 1.81e-172 | 482 |
Find 107 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAACTGTAGTCCTTTA+TGG | 0.108217 | 1_2:+18452894 | None:intergenic |
| ACGCGGCATATGCCTTATTT+TGG | 0.179852 | 1_2:-18449868 | Msa0060680:three_prime_UTR |
| TCGAATAATGCTGGATAATA+TGG | 0.220541 | 1_2:-18451274 | Msa0060680:CDS |
| TGAGGTTGATCCTTCTTTAA+AGG | 0.228429 | 1_2:-18453032 | Msa0060680:intron |
| TTCCTTGTATAGGTATTAAT+TGG | 0.238723 | 1_2:-18451946 | Msa0060680:intron |
| TCATCAGAGACATAACTTCT+AGG | 0.245689 | 1_2:-18455148 | Msa0060680:CDS |
| ATTCCTCACAACCTTGAATT+AGG | 0.247347 | 1_2:-18455247 | Msa0060680:five_prime_UTR |
| ATAAGCATTGCTTTCAGAAT+TGG | 0.263769 | 1_2:-18449670 | Msa0060680:three_prime_UTR |
| CTACAGTTTGGAAAAGTTAA+TGG | 0.303618 | 1_2:-18452884 | Msa0060680:intron |
| GTGGAGTAACCTACATTTCT+AGG | 0.319411 | 1_2:-18450299 | Msa0060680:intron |
| TCGTATTAGATTCCAAAATA+AGG | 0.329656 | 1_2:+18449856 | None:intergenic |
| AAAAGCTGGTGACCTGTATC+TGG | 0.334159 | 1_2:-18451833 | Msa0060680:CDS |
| AAATAATATATATAGCATTT+AGG | 0.336071 | 1_2:-18449806 | Msa0060680:three_prime_UTR |
| GCAGAAGATGCTGGGGATCT+AGG | 0.339591 | 1_2:-18453346 | Msa0060680:intron |
| AAGGAGGATGGCATCGTTGC+TGG | 0.343013 | 1_2:-18453082 | Msa0060680:CDS |
| CACTAACCTATGTATGAGTA+TGG | 0.346327 | 1_2:-18449570 | Msa0060680:three_prime_UTR |
| GGAAGTCGAAGCTTATTTCT+TGG | 0.356431 | 1_2:-18453107 | Msa0060680:CDS |
| GTCCATAAAGGACTACAGTT+TGG | 0.357513 | 1_2:-18452896 | Msa0060680:CDS |
| AATGGGTGGAGTGGAGTAAC+TGG | 0.359571 | 1_2:-18455368 | Msa0060680:five_prime_UTR |
| TGCTCCGTGTTTACGTTTGT+TGG | 0.360433 | 1_2:-18452073 | Msa0060680:CDS |
| AAAAGATGTGTCCTAATTCA+AGG | 0.364257 | 1_2:+18455236 | None:intergenic |
| TTGGCCATCAATTTGCTAGA+TGG | 0.376886 | 1_2:-18449726 | Msa0060680:three_prime_UTR |
| CACACACTAATGACCAATAA+TGG | 0.380059 | 1_2:-18455441 | None:intergenic |
| CCTCAAAATTGATACTGAAT+TGG | 0.380529 | 1_2:-18449965 | Msa0060680:CDS |
| TCAACATCTCCGTTTGATAA+AGG | 0.380628 | 1_2:+18451246 | None:intergenic |
| ATAGATACAGTACATAAAAT+CGG | 0.383450 | 1_2:-18450327 | Msa0060680:CDS |
| ATATCATAATCAAGCTCTTC+CGG | 0.389803 | 1_2:+18449921 | None:intergenic |
| TTTCTTATATCATTCCTTGC+CGG | 0.391938 | 1_2:-18449899 | Msa0060680:three_prime_UTR |
| GCATCCTACTTATGATTTGA+AGG | 0.401374 | 1_2:-18453389 | Msa0060680:CDS |
| CTTGCTCTTGCAGAAGATGC+TGG | 0.404352 | 1_2:-18453355 | Msa0060680:CDS |
| TATTTGTGAATCCAGGCTTC+AGG | 0.405459 | 1_2:-18450360 | Msa0060680:intron |
| GCCACCATCTAGCAAATTGA+TGG | 0.420624 | 1_2:+18449722 | None:intergenic |
| TTCTTTAACTCGAATAATGC+TGG | 0.425179 | 1_2:-18451283 | Msa0060680:CDS |
| GTGGCTAGAATGACTAAGTT+AGG | 0.430644 | 1_2:-18449704 | Msa0060680:three_prime_UTR |
| GAAGCTGTGCGGTTGGTCAA+TGG | 0.438267 | 1_2:-18451207 | Msa0060680:CDS |
| AAGCTGTGCGGTTGGTCAAT+GGG | 0.445964 | 1_2:-18451206 | Msa0060680:CDS |
| AGCATCGCCTGCATATATAT+TGG | 0.446995 | 1_2:-18452109 | Msa0060680:CDS |
| ACTGAATTGGCGCTTAAAGT+TGG | 0.451185 | 1_2:-18449952 | Msa0060680:CDS |
| GTTTACGTTTGTTGGATAAG+TGG | 0.454989 | 1_2:-18452065 | Msa0060680:CDS |
| TTGCTTCATACCTTTAAAGA+AGG | 0.458741 | 1_2:+18453022 | None:intergenic |
| GCTTCGACTTCCATGTCAAA+TGG | 0.464861 | 1_2:+18453118 | None:intergenic |
| AAAACTTTACCTAGAAATGT+AGG | 0.470300 | 1_2:+18450290 | None:intergenic |
| TTATGCATCTAATAATTTGT+GGG | 0.471517 | 1_2:-18449523 | None:intergenic |
| TTTATGCATCTAATAATTTG+TGG | 0.472504 | 1_2:-18449524 | None:intergenic |
| TTTACGTTTGTTGGATAAGT+GGG | 0.473302 | 1_2:-18452064 | Msa0060680:CDS |
| CTAGTCTCCAATATATATGC+AGG | 0.474951 | 1_2:+18452102 | None:intergenic |
| TGACAAGTAACCTTGTTTGT+AGG | 0.476126 | 1_2:+18455184 | None:intergenic |
| CTTGTATAGGTATTAATTGG+TGG | 0.481768 | 1_2:-18451943 | Msa0060680:intron |
| TAGTCTTCAATTGGAGGTTG+AGG | 0.482159 | 1_2:-18451803 | Msa0060680:intron |
| CATCCTACTTATGATTTGAA+GGG | 0.486121 | 1_2:-18453388 | Msa0060680:CDS |
| TTGCTCTTGCAGAAGATGCT+GGG | 0.488745 | 1_2:-18453354 | Msa0060680:CDS |
| GACTAGGACTCTTGAGGAAG+TGG | 0.488980 | 1_2:-18451340 | Msa0060680:CDS |
| TGCAGAGATGATATTTAATG+AGG | 0.494921 | 1_2:-18453050 | Msa0060680:CDS |
| TAACATTGTTGTAGCTGAAA+GGG | 0.499902 | 1_2:-18452738 | Msa0060680:CDS |
| GTTACAAATGCCCTAAAAGC+TGG | 0.505334 | 1_2:-18451847 | Msa0060680:CDS |
| TGTGTTTCATTACTTCATGA+AGG | 0.510389 | 1_2:+18449833 | None:intergenic |
| ATGGTTGTACCTTTATCAAA+CGG | 0.511127 | 1_2:-18451255 | Msa0060680:CDS |
| GATAATCATATATCAACAGC+TGG | 0.512224 | 1_2:-18451874 | Msa0060680:CDS |
| ATAACATTGTTGTAGCTGAA+AGG | 0.525165 | 1_2:-18452739 | Msa0060680:CDS |
| AGCTTATTTCTTGGCGAAGG+AGG | 0.528001 | 1_2:-18453098 | Msa0060680:CDS |
| AATTGGCGCTTAAAGTTGGA+AGG | 0.528440 | 1_2:-18449948 | Msa0060680:CDS |
| TAGATACAGTACATAAAATC+GGG | 0.531386 | 1_2:-18450326 | Msa0060680:CDS |
| TATAGGTGATATAACATGCT+TGG | 0.532134 | 1_2:-18453149 | Msa0060680:intron |
| TGGAGGACGAAATCATAGAA+TGG | 0.532624 | 1_2:-18451923 | Msa0060680:CDS |
| TATTTCTTGGCGAAGGAGGA+TGG | 0.532732 | 1_2:-18453094 | Msa0060680:CDS |
| ATCTTACCATACTCATACAT+AGG | 0.533470 | 1_2:+18449564 | None:intergenic |
| GGAGGACGAAATCATAGAAT+GGG | 0.538882 | 1_2:-18451922 | Msa0060680:CDS |
| CTTAAAGTTGGAAGGCGCAC+CGG | 0.542235 | 1_2:-18449940 | Msa0060680:CDS |
| GCCATCAATTTGCTAGATGG+TGG | 0.549986 | 1_2:-18449723 | Msa0060680:three_prime_UTR |
| CGAAGCTTATTTCTTGGCGA+AGG | 0.552796 | 1_2:-18453101 | Msa0060680:CDS |
| TGCGAAAAGTAGAAACGAAT+GGG | 0.553403 | 1_2:-18455385 | Msa0060680:five_prime_UTR |
| AACTTTATGCAGAGGATGAG+TGG | 0.553734 | 1_2:-18452707 | Msa0060680:CDS |
| ATGCCCTTCAAATCATAAGT+AGG | 0.554178 | 1_2:+18453385 | None:intergenic |
| CTAGGTTTCCACCTCCACTC+AGG | 0.556808 | 1_2:-18455130 | Msa0060680:intron |
| TAGAATGGGTTTGTTTGACA+TGG | 0.558081 | 1_2:-18451908 | Msa0060680:CDS |
| TTGCGAAAAGTAGAAACGAA+TGG | 0.559486 | 1_2:-18455386 | Msa0060680:five_prime_UTR |
| GACTTCCATGTCAAATGGAA+TGG | 0.559575 | 1_2:+18453123 | None:intergenic |
| AAATCATAAGTAGGATGCAA+AGG | 0.574927 | 1_2:+18453394 | None:intergenic |
| CTTTGAAATATCAGGTGGAG+TGG | 0.579489 | 1_2:-18452940 | Msa0060680:intron |
| GTATAGGTATTAATTGGTGG+AGG | 0.583098 | 1_2:-18451940 | Msa0060680:intron |
| TGCTCTTGCAGAAGATGCTG+GGG | 0.583554 | 1_2:-18453353 | Msa0060680:CDS |
| ATATGCCGCGTAGTGAAGAC+CGG | 0.584564 | 1_2:+18449880 | None:intergenic |
| ATGTTTCTTACCTACAAACA+AGG | 0.597208 | 1_2:-18455194 | Msa0060680:CDS |
| TGGCATTGCAACTTTAACCA+AGG | 0.597429 | 1_2:-18452687 | Msa0060680:intron |
| GGCCACCATTCCATTTGACA+TGG | 0.598004 | 1_2:-18453128 | Msa0060680:CDS |
| CAAAGGAGGCTTTACTGCGA+AGG | 0.603116 | 1_2:+18453411 | None:intergenic |
| GTAGAAACGAATGGGTGGAG+TGG | 0.603208 | 1_2:-18455377 | Msa0060680:five_prime_UTR |
| TTCCATGTCAAATGGAATGG+TGG | 0.606981 | 1_2:+18453126 | None:intergenic |
| GCTGAAAGAAGCTGTGCGGT+TGG | 0.613125 | 1_2:-18451214 | Msa0060680:CDS |
| TACAAAGGCAACCTAAACTC+AGG | 0.623566 | 1_2:-18455008 | Msa0060680:intron |
| GATTCTCGCTTAAACTACAA+AGG | 0.624258 | 1_2:-18455023 | Msa0060680:CDS |
| ATGGGTGGAGTGGAGTAACT+GGG | 0.626240 | 1_2:-18455367 | Msa0060680:five_prime_UTR |
| CAATGGGAGATTTGAAACTG+AGG | 0.629104 | 1_2:-18451190 | Msa0060680:intron |
| GGTTGAGACTAGGACTCTTG+AGG | 0.629180 | 1_2:-18451346 | Msa0060680:CDS |
| TAGTGCTAAACTTTATGCAG+AGG | 0.631286 | 1_2:-18452715 | Msa0060680:CDS |
| TGTCCTAATTCAAGGTTGTG+AGG | 0.637627 | 1_2:+18455244 | None:intergenic |
| GTACATAAAATCGGGCAAAG+TGG | 0.642028 | 1_2:-18450318 | Msa0060680:CDS |
| AAGGACTCGTATGAGATCGT+CGG | 0.643661 | 1_2:+18453430 | None:intergenic |
| TCATAAGTAGGATGCAAAGG+AGG | 0.644964 | 1_2:+18453397 | None:intergenic |
| ACGTTTGTTGGATAAGTGGG+CGG | 0.647258 | 1_2:-18452061 | Msa0060680:intron |
| TTATCCAACAAACGTAAACA+CGG | 0.659218 | 1_2:+18452069 | None:intergenic |
| AATCATATATCAACAGCTGG+AGG | 0.664583 | 1_2:-18451871 | Msa0060680:CDS |
| TCTCTGATGAGAAATGATTG+AGG | 0.697557 | 1_2:+18455161 | None:intergenic |
| CCGCGTAGTGAAGACCGGCA+AGG | 0.705909 | 1_2:+18449885 | None:intergenic |
| CCTTGCCGGTCTTCACTACG+CGG | 0.714847 | 1_2:-18449885 | Msa0060680:three_prime_UTR |
| GAAAAGTAGAAACGAATGGG+TGG | 0.736388 | 1_2:-18455382 | Msa0060680:five_prime_UTR |
| CTATGCTGAAAGAAGCTGTG+CGG | 0.758489 | 1_2:-18451218 | Msa0060680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAAAATATAAATAAA+TGG | + | chr1_2:18452955-18452974 | None:intergenic | 0.0% |
| !! | AATAAAAAATAAAATAAAAA+TGG | + | chr1_2:18453261-18453280 | None:intergenic | 0.0% |
| !!! | ATTATTTTTATAAACTATCT+TGG | + | chr1_2:18450064-18450083 | None:intergenic | 10.0% |
| !! | AAATAATATATATAGCATTT+AGG | - | chr1_2:18455146-18455165 | Msa0060680:CDS | 10.0% |
| !! | GGAAAAATAAATAAATAACT+TGG | - | chr1_2:18450789-18450808 | Msa0060680:intron | 15.0% |
| !!! | GTTTTTAATTGATTTATGAA+AGG | - | chr1_2:18452150-18452169 | Msa0060680:intron | 15.0% |
| !! | TTAAGAAAATAAAAATACCT+TGG | + | chr1_2:18452285-18452304 | None:intergenic | 15.0% |
| !! | ATATAATAATGAACAAATCA+CGG | - | chr1_2:18452659-18452678 | Msa0060680:intron | 15.0% |
| !! | TGATAAATATAAGATAACAA+TGG | + | chr1_2:18452779-18452798 | None:intergenic | 15.0% |
| !! | AAATTATTCATTAAGAATCA+GGG | + | chr1_2:18453214-18453233 | None:intergenic | 15.0% |
| !! | AAAATTATTCATTAAGAATC+AGG | + | chr1_2:18453215-18453234 | None:intergenic | 15.0% |
| !!! | AAAATAGAAATTTTTTGTGA+AGG | - | chr1_2:18454309-18454328 | Msa0060680:intron | 15.0% |
| !!! | TATCTAATCGTTTTTTTATT+TGG | - | chr1_2:18454472-18454491 | Msa0060680:intron | 15.0% |
| !! | TAATATTATAAACCATATGT+TGG | - | chr1_2:18454812-18454831 | Msa0060680:intron | 15.0% |
| !! | AAAAACAAAAATGTTGAATG+AGG | + | chr1_2:18449860-18449879 | None:intergenic | 20.0% |
| !! | ATAAGAGAAACTATTAAGAA+AGG | - | chr1_2:18450253-18450272 | Msa0060680:intron | 20.0% |
| !! | AAACACATATTTCAAAAGTA+GGG | - | chr1_2:18450768-18450787 | Msa0060680:intron | 20.0% |
| !! | TGGTTATTTATAAAACACTA+TGG | + | chr1_2:18451087-18451106 | None:intergenic | 20.0% |
| !!! | TCCAACTCATTTTTAAAATA+TGG | - | chr1_2:18451115-18451134 | Msa0060680:intron | 20.0% |
| !!! | ACCATATTTTAAAAATGAGT+TGG | + | chr1_2:18451119-18451138 | None:intergenic | 20.0% |
| !! | TGCTTAAAGTATAAATCTAT+TGG | - | chr1_2:18451253-18451272 | Msa0060680:CDS | 20.0% |
| !!! | ATAAGAAATGTTTTGACTAT+AGG | - | chr1_2:18451786-18451805 | Msa0060680:intron | 20.0% |
| !! | TAACCACAAATATTATGATA+GGG | + | chr1_2:18451966-18451985 | None:intergenic | 20.0% |
| !! | TTAACCACAAATATTATGAT+AGG | + | chr1_2:18451967-18451986 | None:intergenic | 20.0% |
| !! | ATATTGTATGATGTTTGTAA+AGG | - | chr1_2:18452331-18452350 | Msa0060680:intron | 20.0% |
| !! | ATTGAATTGAAATGGTTAAA+AGG | - | chr1_2:18452409-18452428 | Msa0060680:intron | 20.0% |
| !! | TATTGATAAAAAAATGGATG+AGG | + | chr1_2:18452642-18452661 | None:intergenic | 20.0% |
| !! | ATGTATAAAAATGAAAGGAA+TGG | + | chr1_2:18452930-18452949 | None:intergenic | 20.0% |
| !! | TTGTTGTGAAATCTATTAAA+GGG | + | chr1_2:18453284-18453303 | None:intergenic | 20.0% |
| !!! | CAATTATATAAAGCTTTGTT+AGG | + | chr1_2:18453405-18453424 | None:intergenic | 20.0% |
| !!! | CTAACAAAGCTTTATATAAT+TGG | - | chr1_2:18453403-18453422 | Msa0060680:CDS | 20.0% |
| !! | TTTATTGAAACTAGAGAAAA+TGG | + | chr1_2:18454363-18454382 | None:intergenic | 20.0% |
| !! | ATAGATACAGTACATAAAAT+CGG | - | chr1_2:18454625-18454644 | Msa0060680:intron | 20.0% |
| !! | AGTATTTTATACCTGAGTTT+AGG | + | chr1_2:18449958-18449977 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | + | chr1_2:18450244-18450263 | None:intergenic | 25.0% |
| ! | AGGTTTAGATATTAATGAGT+TGG | - | chr1_2:18450273-18450292 | Msa0060680:intron | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr1_2:18450301-18450320 | None:intergenic | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | chr1_2:18450305-18450324 | Msa0060680:CDS | 25.0% |
| ! | ATTGAGTTAGCATTTATCAT+TGG | - | chr1_2:18450539-18450558 | Msa0060680:intron | 25.0% |
| !!! | ACTTTTGAAATATGTGTTTG+TGG | + | chr1_2:18450767-18450786 | None:intergenic | 25.0% |
| ! | CAAACACATATTTCAAAAGT+AGG | - | chr1_2:18450767-18450786 | Msa0060680:intron | 25.0% |
| ! | TGGTAATAAAACTGATTGTT+AGG | - | chr1_2:18450809-18450828 | Msa0060680:intron | 25.0% |
| ! | AAAAATTAGCTATCCAGATT+TGG | + | chr1_2:18450911-18450930 | None:intergenic | 25.0% |
| ! | ATATTCTTTACTATACGCTT+TGG | + | chr1_2:18450993-18451012 | None:intergenic | 25.0% |
| ! | AAAGCGTATAGTAAAGAATA+TGG | - | chr1_2:18450992-18451011 | Msa0060680:intron | 25.0% |
| !! | GATTTATACTTTAAGCATTG+AGG | + | chr1_2:18451250-18451269 | None:intergenic | 25.0% |
| ! | ATACCCTATCATAATATTTG+TGG | - | chr1_2:18451960-18451979 | Msa0060680:intron | 25.0% |
| ! | AATTCTTGACTTAATCATTG+AGG | - | chr1_2:18451985-18452004 | Msa0060680:intron | 25.0% |
| ! | AACTTAATTACGAAAGCAAA+TGG | - | chr1_2:18452110-18452129 | Msa0060680:CDS | 25.0% |
| ! | AACGATTCACAGTTAATTAT+TGG | - | chr1_2:18452373-18452392 | Msa0060680:intron | 25.0% |
| !!! | ACAGTTAATTATTGGTAATG+TGG | - | chr1_2:18452381-18452400 | Msa0060680:intron | 25.0% |
| !!! | CAGTTAATTATTGGTAATGT+GGG | - | chr1_2:18452382-18452401 | Msa0060680:intron | 25.0% |
| !!! | AGTTAATTATTGGTAATGTG+GGG | - | chr1_2:18452383-18452402 | Msa0060680:intron | 25.0% |
| !! | TTTATCGTAAGAGAAGTTTT+AGG | - | chr1_2:18452547-18452566 | Msa0060680:intron | 25.0% |
| ! | AATTCAGATTGAGTAAAAGA+TGG | - | chr1_2:18452713-18452732 | Msa0060680:CDS | 25.0% |
| ! | TGGTCATGTATAAAAATGAA+AGG | + | chr1_2:18452935-18452954 | None:intergenic | 25.0% |
| !!! | TATTGTTGATTTCCTTGTAT+AGG | - | chr1_2:18452996-18453015 | Msa0060680:intron | 25.0% |
| ! | TTCCTTGTATAGGTATTAAT+TGG | - | chr1_2:18453006-18453025 | Msa0060680:intron | 25.0% |
| ! | GTTGTTGTGAAATCTATTAA+AGG | + | chr1_2:18453285-18453304 | None:intergenic | 25.0% |
| ! | TTAAAATGCCATTAAATGGA+CGG | + | chr1_2:18453451-18453470 | None:intergenic | 25.0% |
| !! | TCCATTTAATGGCATTTTAA+TGG | - | chr1_2:18453451-18453470 | Msa0060680:CDS | 25.0% |
| ! | TTAACCTGTATCGTATTATT+CGG | - | chr1_2:18453808-18453827 | Msa0060680:intron | 25.0% |
| ! | TAGAAATAAAAACAGTGTGA+TGG | + | chr1_2:18453931-18453950 | None:intergenic | 25.0% |
| ! | AAAGAAGGAAAAGTTAGTTA+AGG | - | chr1_2:18454213-18454232 | Msa0060680:intron | 25.0% |
| ! | TAAGAAACAAACAAGTTCAA+AGG | + | chr1_2:18454449-18454468 | None:intergenic | 25.0% |
| ! | TAGATACAGTACATAAAATC+GGG | - | chr1_2:18454626-18454645 | Msa0060680:intron | 25.0% |
| ! | AAAACTTTACCTAGAAATGT+AGG | + | chr1_2:18454665-18454684 | None:intergenic | 25.0% |
| ! | ACAATACATGTAGAAATTGA+AGG | + | chr1_2:18454735-18454754 | None:intergenic | 25.0% |
| ! | AAAATTTCATTGCTCTGATA+TGG | - | chr1_2:18454914-18454933 | Msa0060680:intron | 25.0% |
| ! | AAATTTCATTGCTCTGATAT+GGG | - | chr1_2:18454915-18454934 | Msa0060680:intron | 25.0% |
| !! | CAATTCAGTATCAATTTTGA+GGG | + | chr1_2:18454989-18455008 | None:intergenic | 25.0% |
| ! | TCGTATTAGATTCCAAAATA+AGG | + | chr1_2:18455099-18455118 | None:intergenic | 25.0% |
| !!! | TGATATGAAATGCTGTTTTT+TGG | - | chr1_2:18455207-18455226 | Msa0060680:exon | 25.0% |
| AAGAAAAAGCAAGCATATGA+TGG | + | chr1_2:18449666-18449685 | None:intergenic | 30.0% | |
| AAAAGATGTGTCCTAATTCA+AGG | + | chr1_2:18449719-18449738 | None:intergenic | 30.0% | |
| ATGTTTCTTACCTACAAACA+AGG | - | chr1_2:18449758-18449777 | Msa0060680:three_prime_UTR | 30.0% | |
| !! | CCTAAATTAGAAGCATTTGA+AGG | + | chr1_2:18449981-18450000 | None:intergenic | 30.0% |
| CCTTCAAATGCTTCTAATTT+AGG | - | chr1_2:18449978-18449997 | Msa0060680:CDS | 30.0% | |
| TGTAGTAAAGAGAGTAGATT+AGG | - | chr1_2:18450183-18450202 | Msa0060680:intron | 30.0% | |
| AGTCAAATTACAAGAAGTAG+AGG | - | chr1_2:18450214-18450233 | Msa0060680:intron | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr1_2:18450285-18450304 | Msa0060680:intron | 30.0% |
| ! | CCACTAATTTTCACTTCAAT+GGG | + | chr1_2:18450509-18450528 | None:intergenic | 30.0% |
| CCATTGAAGTGAAAATTAGT+GGG | - | chr1_2:18450507-18450526 | Msa0060680:intron | 30.0% | |
| !! | TTTCAACTGGTTTGAGTTAA+GGG | + | chr1_2:18450623-18450642 | None:intergenic | 30.0% |
| !!! | TTTTCAACTGGTTTGAGTTA+AGG | + | chr1_2:18450624-18450643 | None:intergenic | 30.0% |
| !!! | AACTCAACTAGTTTTTCAAC+TGG | + | chr1_2:18450636-18450655 | None:intergenic | 30.0% |
| !!! | GTTTTGAAGTATGTCATTCA+TGG | - | chr1_2:18450665-18450684 | Msa0060680:intron | 30.0% |
| GGAGCAATAATTGAATTTGA+AGG | + | chr1_2:18450692-18450711 | None:intergenic | 30.0% | |
| ! | TGATTGTTAGGAACTTTTGA+GGG | - | chr1_2:18450821-18450840 | Msa0060680:intron | 30.0% |
| GACAACAATGACAATTTGAT+GGG | + | chr1_2:18450863-18450882 | None:intergenic | 30.0% | |
| TGACAACAATGACAATTTGA+TGG | + | chr1_2:18450864-18450883 | None:intergenic | 30.0% | |
| ! | TCTATTGGTAATATGCAAAG+CGG | - | chr1_2:18451268-18451287 | Msa0060680:CDS | 30.0% |
| TAATCAATTACACCTGTAAC+TGG | + | chr1_2:18451344-18451363 | None:intergenic | 30.0% | |
| AAATCATAAGTAGGATGCAA+AGG | + | chr1_2:18451561-18451580 | None:intergenic | 30.0% | |
| CATCCTACTTATGATTTGAA+GGG | - | chr1_2:18451564-18451583 | Msa0060680:intron | 30.0% | |
| CATGAAACTAGAAGAAAGTT+TGG | + | chr1_2:18451639-18451658 | None:intergenic | 30.0% | |
| TATAGGTGATATAACATGCT+TGG | - | chr1_2:18451803-18451822 | Msa0060680:intron | 30.0% | |
| TGCAGAGATGATATTTAATG+AGG | - | chr1_2:18451902-18451921 | Msa0060680:CDS | 30.0% | |
| ! | TTGCTTCATACCTTTAAAGA+AGG | + | chr1_2:18451933-18451952 | None:intergenic | 30.0% |
| !! | GAGGATTACTTTGAAATATC+AGG | - | chr1_2:18452004-18452023 | Msa0060680:intron | 30.0% |
| !! | GATTACTTTGAAATATCAGG+TGG | - | chr1_2:18452007-18452026 | Msa0060680:intron | 30.0% |
| CTACAGTTTGGAAAAGTTAA+TGG | - | chr1_2:18452068-18452087 | Msa0060680:CDS | 30.0% | |
| ATCTTCAGTTATTCATGTGT+AGG | - | chr1_2:18452182-18452201 | Msa0060680:intron | 30.0% | |
| ATAACATTGTTGTAGCTGAA+AGG | - | chr1_2:18452213-18452232 | Msa0060680:intron | 30.0% | |
| TAACATTGTTGTAGCTGAAA+GGG | - | chr1_2:18452214-18452233 | Msa0060680:intron | 30.0% | |
| TGTTTGTAAAGGTTCTTGTA+AGG | - | chr1_2:18452342-18452361 | Msa0060680:intron | 30.0% | |
| TGGGGAATATTGAATTGAAA+TGG | - | chr1_2:18452401-18452420 | Msa0060680:intron | 30.0% | |
| GAATTGAAATGGTTAAAAGG+AGG | - | chr1_2:18452412-18452431 | Msa0060680:intron | 30.0% | |
| AACTTCTCTTACGATAAATG+TGG | + | chr1_2:18452545-18452564 | None:intergenic | 30.0% | |
| CACTAATCTGACAAATTGTT+AGG | + | chr1_2:18452607-18452626 | None:intergenic | 30.0% | |
| TGGTGATTTCAGAAATCATT+AGG | + | chr1_2:18452759-18452778 | None:intergenic | 30.0% | |
| CCTGTGAAAAAACATGATAT+AGG | + | chr1_2:18452810-18452829 | None:intergenic | 30.0% | |
| !!! | CCTATATCATGTTTTTTCAC+AGG | - | chr1_2:18452807-18452826 | Msa0060680:intron | 30.0% |
| TTATCCAACAAACGTAAACA+CGG | + | chr1_2:18452886-18452905 | None:intergenic | 30.0% | |
| ! | TTTACGTTTGTTGGATAAGT+GGG | - | chr1_2:18452888-18452907 | Msa0060680:CDS | 30.0% |
| CACCAATTAATACCTATACA+AGG | + | chr1_2:18453011-18453030 | None:intergenic | 30.0% | |
| CTTGTATAGGTATTAATTGG+TGG | - | chr1_2:18453009-18453028 | Msa0060680:intron | 30.0% | |
| GATAATCATATATCAACAGC+TGG | - | chr1_2:18453078-18453097 | Msa0060680:CDS | 30.0% | |
| GGAGAAAAATAGTCTTCAAT+TGG | - | chr1_2:18453140-18453159 | Msa0060680:CDS | 30.0% | |
| GAAAAATAGTCTTCAATTGG+AGG | - | chr1_2:18453143-18453162 | Msa0060680:CDS | 30.0% | |
| !! | TTTTAACTACCCTACAGATA+TGG | + | chr1_2:18453331-18453350 | None:intergenic | 30.0% |
| AGGTAATTCAAGGTTAAGAT+GGG | + | chr1_2:18453362-18453381 | None:intergenic | 30.0% | |
| GCCATTAAAATGCCATTAAA+TGG | + | chr1_2:18453455-18453474 | None:intergenic | 30.0% | |
| GTTAAATGCATTTGTAGATC+TGG | - | chr1_2:18453502-18453521 | Msa0060680:intron | 30.0% | |
| TTCTTTAACTCGAATAATGC+TGG | - | chr1_2:18453669-18453688 | Msa0060680:intron | 30.0% | |
| TCGAATAATGCTGGATAATA+TGG | - | chr1_2:18453678-18453697 | Msa0060680:intron | 30.0% | |
| ATGGTTGTACCTTTATCAAA+CGG | - | chr1_2:18453697-18453716 | Msa0060680:intron | 30.0% | |
| AACAGACAGAAACAAAAACA+TGG | + | chr1_2:18453954-18453973 | None:intergenic | 30.0% | |
| CATTACAGCAGTATATTTCA+CGG | + | chr1_2:18454150-18454169 | None:intergenic | 30.0% | |
| AAAAGTTAGTTAAGGTCAGT+TGG | - | chr1_2:18454221-18454240 | Msa0060680:intron | 30.0% | |
| AGTAAGAGAGGATTATTAAG+AGG | - | chr1_2:18454246-18454265 | Msa0060680:intron | 30.0% | |
| GTAAGAGAGGATTATTAAGA+GGG | - | chr1_2:18454247-18454266 | Msa0060680:intron | 30.0% | |
| TAAGAGAGGATTATTAAGAG+GGG | - | chr1_2:18454248-18454267 | Msa0060680:intron | 30.0% | |
| ! | GTGAATTTGATAGTTTCTGT+TGG | - | chr1_2:18454286-18454305 | Msa0060680:intron | 30.0% |
| ! | TTTTGTGAAGGAGAAATTCT+CGG | - | chr1_2:18454321-18454340 | Msa0060680:intron | 30.0% |
| TTTGTCATATTTGTGAATCC+AGG | - | chr1_2:18454585-18454604 | Msa0060680:intron | 30.0% | |
| TAAAACAGTGACTAAAGCAA+AGG | + | chr1_2:18454855-18454874 | None:intergenic | 30.0% | |
| !! | GTTTTTAGAAACTCACAAAC+CGG | - | chr1_2:18454877-18454896 | Msa0060680:intron | 30.0% |
| ! | CAGAGCAATGAAATTTTGTA+GGG | + | chr1_2:18454911-18454930 | None:intergenic | 30.0% |
| ! | TCAGAGCAATGAAATTTTGT+AGG | + | chr1_2:18454912-18454931 | None:intergenic | 30.0% |
| ! | CCAATTCAGTATCAATTTTG+AGG | + | chr1_2:18454990-18455009 | None:intergenic | 30.0% |
| CCTCAAAATTGATACTGAAT+TGG | - | chr1_2:18454987-18455006 | Msa0060680:intron | 30.0% | |
| ATATCATAATCAAGCTCTTC+CGG | + | chr1_2:18455034-18455053 | None:intergenic | 30.0% | |
| TTTCTTATATCATTCCTTGC+CGG | - | chr1_2:18455053-18455072 | Msa0060680:intron | 30.0% | |
| TGTGTTTCATTACTTCATGA+AGG | + | chr1_2:18455122-18455141 | None:intergenic | 30.0% | |
| ! | ATAAGCATTGCTTTCAGAAT+TGG | - | chr1_2:18455282-18455301 | Msa0060680:five_prime_UTR | 30.0% |
| ATCTTACCATACTCATACAT+AGG | + | chr1_2:18455391-18455410 | None:intergenic | 30.0% | |
| TTGCGAAAAGTAGAAACGAA+TGG | - | chr1_2:18449566-18449585 | Msa0060680:three_prime_UTR | 35.0% | |
| TGCGAAAAGTAGAAACGAAT+GGG | - | chr1_2:18449567-18449586 | Msa0060680:three_prime_UTR | 35.0% | |
| ATTCCTCACAACCTTGAATT+AGG | - | chr1_2:18449705-18449724 | Msa0060680:three_prime_UTR | 35.0% | |
| ! | TGACAAGTAACCTTGTTTGT+AGG | + | chr1_2:18449771-18449790 | None:intergenic | 35.0% |
| TCTCTGATGAGAAATGATTG+AGG | + | chr1_2:18449794-18449813 | None:intergenic | 35.0% | |
| TCATCAGAGACATAACTTCT+AGG | - | chr1_2:18449804-18449823 | Msa0060680:three_prime_UTR | 35.0% | |
| GATTCTCGCTTAAACTACAA+AGG | - | chr1_2:18449929-18449948 | Msa0060680:exon | 35.0% | |
| CTCTTTACTACAGAATCTAC+AGG | + | chr1_2:18450175-18450194 | None:intergenic | 35.0% | |
| AAAGAGAGTAGATTAGGTGA+AGG | - | chr1_2:18450189-18450208 | Msa0060680:intron | 35.0% | |
| CCCATTGAAGTGAAAATTAG+TGG | - | chr1_2:18450506-18450525 | Msa0060680:intron | 35.0% | |
| ! | CCCACTAATTTTCACTTCAA+TGG | + | chr1_2:18450510-18450529 | None:intergenic | 35.0% |
| AGGGTTGAAGTAGTTAAACA+CGG | + | chr1_2:18450604-18450623 | None:intergenic | 35.0% | |
| GAATGACATACTTCAAAACC+AGG | + | chr1_2:18450664-18450683 | None:intergenic | 35.0% | |
| TCCTTGTCGTAGATATCAAA+GGG | + | chr1_2:18450713-18450732 | None:intergenic | 35.0% | |
| !!! | CTTTTGAAATACGCCAATCA+TGG | + | chr1_2:18450736-18450755 | None:intergenic | 35.0% |
| CATGATTGGCGTATTTCAAA+AGG | - | chr1_2:18450734-18450753 | Msa0060680:intron | 35.0% | |
| ! | CTGATTGTTAGGAACTTTTG+AGG | - | chr1_2:18450820-18450839 | Msa0060680:intron | 35.0% |
| CAGATTTGGATAGACAAAAC+AGG | + | chr1_2:18450897-18450916 | None:intergenic | 35.0% | |
| ! | CTGTTTTGTCTATCCAAATC+TGG | - | chr1_2:18450895-18450914 | Msa0060680:intron | 35.0% |
| ! | AAATGAGTTGGAGATAGACA+TGG | + | chr1_2:18451107-18451126 | None:intergenic | 35.0% |
| ! | ATCAACAGCATTTTTCATGC+TGG | - | chr1_2:18451165-18451184 | Msa0060680:intron | 35.0% |
| ! | TTTTTCATGCTGGTGCAATT+TGG | - | chr1_2:18451175-18451194 | Msa0060680:intron | 35.0% |
| !! | GCAATTTGGTGATGAAACAA+AGG | - | chr1_2:18451189-18451208 | Msa0060680:intron | 35.0% |
| GTTACTTAACTCAGATTGTC+AGG | + | chr1_2:18451322-18451341 | None:intergenic | 35.0% | |
| TGAGTTAAGTAACCAGTTAC+AGG | - | chr1_2:18451329-18451348 | Msa0060680:CDS | 35.0% | |
| !!! | GTTATTTTGCTGTTCGTAGA+TGG | - | chr1_2:18451387-18451406 | Msa0060680:intron | 35.0% |
| GCATCCTACTTATGATTTGA+AGG | - | chr1_2:18451563-18451582 | Msa0060680:intron | 35.0% | |
| ATGCCCTTCAAATCATAAGT+AGG | + | chr1_2:18451570-18451589 | None:intergenic | 35.0% | |
| ! | TGAGGTTGATCCTTCTTTAA+AGG | - | chr1_2:18451920-18451939 | Msa0060680:CDS | 35.0% |
| ! | GATGGAGATTTTGTCCATAA+AGG | - | chr1_2:18452044-18452063 | Msa0060680:intron | 35.0% |
| TTCCAAACTGTAGTCCTTTA+TGG | + | chr1_2:18452061-18452080 | None:intergenic | 35.0% | |
| TCAGTTATTCATGTGTAGGA+CGG | - | chr1_2:18452186-18452205 | Msa0060680:intron | 35.0% | |
| TAGTGCTAAACTTTATGCAG+AGG | - | chr1_2:18452237-18452256 | Msa0060680:intron | 35.0% | |
| TCTTTATTGAAGAGTAGCCT+CGG | + | chr1_2:18452495-18452514 | None:intergenic | 35.0% | |
| TGGTTGTGTTATGTTTCATC+AGG | - | chr1_2:18452733-18452752 | Msa0060680:CDS | 35.0% | |
| !!! | TCATGTTTTTTCACAGGCAA+TGG | - | chr1_2:18452813-18452832 | Msa0060680:intron | 35.0% |
| CTAGTCTCCAATATATATGC+AGG | + | chr1_2:18452853-18452872 | None:intergenic | 35.0% | |
| ! | GTTTACGTTTGTTGGATAAG+TGG | - | chr1_2:18452887-18452906 | Msa0060680:CDS | 35.0% |
| GTATAGGTATTAATTGGTGG+AGG | - | chr1_2:18453012-18453031 | Msa0060680:intron | 35.0% | |
| ! | TAGAATGGGTTTGTTTGACA+TGG | - | chr1_2:18453044-18453063 | Msa0060680:CDS | 35.0% |
| AATCATATATCAACAGCTGG+AGG | - | chr1_2:18453081-18453100 | Msa0060680:CDS | 35.0% | |
| !! | GACTATTTTTCTCCAGATAC+AGG | + | chr1_2:18453134-18453153 | None:intergenic | 35.0% |
| AAATGGCTGCAATATAGAGA+GGG | + | chr1_2:18453244-18453263 | None:intergenic | 35.0% | |
| AAAATGGCTGCAATATAGAG+AGG | + | chr1_2:18453245-18453264 | None:intergenic | 35.0% | |
| GAGGTAATTCAAGGTTAAGA+TGG | + | chr1_2:18453363-18453382 | None:intergenic | 35.0% | |
| AGCAAAGATGAGGTAATTCA+AGG | + | chr1_2:18453372-18453391 | None:intergenic | 35.0% | |
| !! | AAAGCTTTGTTAGGCAGTTA+AGG | + | chr1_2:18453396-18453415 | None:intergenic | 35.0% |
| GCTATGCATCTTAAAGTGAT+TGG | - | chr1_2:18453473-18453492 | Msa0060680:intron | 35.0% | |
| TAGATCTGGTGTTCATGATA+TGG | - | chr1_2:18453516-18453535 | Msa0060680:intron | 35.0% | |
| ACAATATTATATCTGCAGCC+AGG | + | chr1_2:18453567-18453586 | None:intergenic | 35.0% | |
| TCAACATCTCCGTTTGATAA+AGG | + | chr1_2:18453709-18453728 | None:intergenic | 35.0% | |
| AAGACCGAATAATACGATAC+AGG | + | chr1_2:18453815-18453834 | None:intergenic | 35.0% | |
| ATGAGTTTACACTCCAAATG+TGG | - | chr1_2:18454061-18454080 | Msa0060680:intron | 35.0% | |
| CGTGAAATATACTGCTGTAA+TGG | - | chr1_2:18454148-18454167 | Msa0060680:intron | 35.0% | |
| ! | TGTCAAATTGATGACAACCA+AGG | + | chr1_2:18454174-18454193 | None:intergenic | 35.0% |
| AATTTGACACGACCGTTATT+GGG | - | chr1_2:18454185-18454204 | Msa0060680:intron | 35.0% | |
| CTTCTTTCTTACCCCAATAA+CGG | + | chr1_2:18454200-18454219 | None:intergenic | 35.0% | |
| TTTGTGAAGGAGAAATTCTC+GGG | - | chr1_2:18454322-18454341 | Msa0060680:intron | 35.0% | |
| !! | AAGCTTTAAGAAATGGACAG+TGG | + | chr1_2:18454415-18454434 | None:intergenic | 35.0% |
| !! | AGAGAGGAAGCTTTAAGAAA+TGG | + | chr1_2:18454422-18454441 | None:intergenic | 35.0% |
| CAAGTTCAAAGGAAAAAGAG+AGG | + | chr1_2:18454438-18454457 | None:intergenic | 35.0% | |
| AGTTAGTTAAGAACGTGAAG+AGG | + | chr1_2:18454560-18454579 | None:intergenic | 35.0% | |
| ! | CTAGATTTTATGAAGTGCAG+TGG | + | chr1_2:18454692-18454711 | None:intergenic | 35.0% |
| ! | TCAAAGTGGATTCCAACATA+TGG | + | chr1_2:18454827-18454846 | None:intergenic | 35.0% |
| AAGCAAAGGAAGAATCAAAG+TGG | + | chr1_2:18454841-18454860 | None:intergenic | 35.0% | |
| ! | ATTTTGTAGGGAAACAGTAC+CGG | + | chr1_2:18454899-18454918 | None:intergenic | 35.0% |
| CACTAACCTATGTATGAGTA+TGG | - | chr1_2:18455382-18455401 | Msa0060680:five_prime_UTR | 35.0% | |
| GAAAAGTAGAAACGAATGGG+TGG | - | chr1_2:18449570-18449589 | Msa0060680:three_prime_UTR | 40.0% | |
| TGTCCTAATTCAAGGTTGTG+AGG | + | chr1_2:18449711-18449730 | None:intergenic | 40.0% | |
| TACAAAGGCAACCTAAACTC+AGG | - | chr1_2:18449944-18449963 | Msa0060680:CDS | 40.0% | |
| ATCTTCTGTCTTCGACTAGA+CGG | - | chr1_2:18450097-18450116 | Msa0060680:intron | 40.0% | |
| ATGACAACGTTAGAGAGAGT+TGG | - | chr1_2:18450133-18450152 | Msa0060680:intron | 40.0% | |
| TGACAACGTTAGAGAGAGTT+GGG | - | chr1_2:18450134-18450153 | Msa0060680:intron | 40.0% | |
| TCTACTACTAACGCTCTGTT+TGG | + | chr1_2:18450482-18450501 | None:intergenic | 40.0% | |
| AAGTAGTTAAACACGGGTGA+AGG | + | chr1_2:18450597-18450616 | None:intergenic | 40.0% | |
| GGGTTGAAGTAGTTAAACAC+GGG | + | chr1_2:18450603-18450622 | None:intergenic | 40.0% | |
| TGACATACTTCAAAACCAGG+AGG | + | chr1_2:18450661-18450680 | None:intergenic | 40.0% | |
| TCCCTTTGATATCTACGACA+AGG | - | chr1_2:18450709-18450728 | Msa0060680:intron | 40.0% | |
| GTCCTTGTCGTAGATATCAA+AGG | + | chr1_2:18450714-18450733 | None:intergenic | 40.0% | |
| TCACTTAGTGGAATAAGGCT+TGG | + | chr1_2:18451040-18451059 | None:intergenic | 40.0% | |
| !! | AAGCCTTATTCCACTAAGTG+AGG | - | chr1_2:18451039-18451058 | Msa0060680:intron | 40.0% |
| CTTATTCCACTAAGTGAGGT+CGG | - | chr1_2:18451043-18451062 | Msa0060680:intron | 40.0% | |
| TGTCAGGATTCAAACACACA+CGG | + | chr1_2:18451306-18451325 | None:intergenic | 40.0% | |
| GAAATGTTTCCATGTGTCAC+TGG | - | chr1_2:18451409-18451428 | Msa0060680:intron | 40.0% | |
| TCTAAATTGTGCGAGAATGC+AGG | - | chr1_2:18451463-18451482 | Msa0060680:intron | 40.0% | |
| TCATAAGTAGGATGCAAAGG+AGG | + | chr1_2:18451558-18451577 | None:intergenic | 40.0% | |
| TTCCATGTCAAATGGAATGG+TGG | + | chr1_2:18451829-18451848 | None:intergenic | 40.0% | |
| GACTTCCATGTCAAATGGAA+TGG | + | chr1_2:18451832-18451851 | None:intergenic | 40.0% | |
| ! | GGAAGTCGAAGCTTATTTCT+TGG | - | chr1_2:18451845-18451864 | Msa0060680:CDS | 40.0% |
| !! | CTTTGAAATATCAGGTGGAG+TGG | - | chr1_2:18452012-18452031 | Msa0060680:intron | 40.0% |
| GTGGAGTGGTCTAAAAATGA+TGG | - | chr1_2:18452026-18452045 | Msa0060680:intron | 40.0% | |
| GTCCATAAAGGACTACAGTT+TGG | - | chr1_2:18452056-18452075 | Msa0060680:intron | 40.0% | |
| CAGTTATTCATGTGTAGGAC+GGG | - | chr1_2:18452187-18452206 | Msa0060680:intron | 40.0% | |
| AACTTTATGCAGAGGATGAG+TGG | - | chr1_2:18452245-18452264 | Msa0060680:intron | 40.0% | |
| TGGCATTGCAACTTTAACCA+AGG | - | chr1_2:18452265-18452284 | Msa0060680:intron | 40.0% | |
| !! | ACATCTGGTTCTGTTTCTCT+TGG | - | chr1_2:18452462-18452481 | Msa0060680:intron | 40.0% |
| ! | GTTCTGTTTCTCTTGGATAC+TGG | - | chr1_2:18452469-18452488 | Msa0060680:intron | 40.0% |
| GCACAACTGGATCAGATAAA+AGG | + | chr1_2:18452523-18452542 | None:intergenic | 40.0% | |
| TACGATAAATGTGGCACAAC+TGG | + | chr1_2:18452536-18452555 | None:intergenic | 40.0% | |
| AGCATCGCCTGCATATATAT+TGG | - | chr1_2:18452843-18452862 | Msa0060680:intron | 40.0% | |
| TGGAGGACGAAATCATAGAA+TGG | - | chr1_2:18453029-18453048 | Msa0060680:intron | 40.0% | |
| GGAGGACGAAATCATAGAAT+GGG | - | chr1_2:18453030-18453049 | Msa0060680:intron | 40.0% | |
| GTTACAAATGCCCTAAAAGC+TGG | - | chr1_2:18453105-18453124 | Msa0060680:CDS | 40.0% | |
| ! | ATACAGGTCACCAGCTTTTA+GGG | + | chr1_2:18453118-18453137 | None:intergenic | 40.0% |
| TAGTCTTCAATTGGAGGTTG+AGG | - | chr1_2:18453149-18453168 | Msa0060680:intron | 40.0% | |
| CCTTAGAAAGAATGCGTGAA+AGG | + | chr1_2:18453191-18453210 | None:intergenic | 40.0% | |
| CCTTTCACGCATTCTTTCTA+AGG | - | chr1_2:18453188-18453207 | Msa0060680:intron | 40.0% | |
| TCCTACTTGCCATATCTGTA+GGG | - | chr1_2:18453319-18453338 | Msa0060680:intron | 40.0% | |
| CAGTTAAGGAAGCAAAGATG+AGG | + | chr1_2:18453382-18453401 | None:intergenic | 40.0% | |
| ATGTCTGTCCGTCCATTTAA+TGG | - | chr1_2:18453440-18453459 | Msa0060680:CDS | 40.0% | |
| ATCTGGTGTTCATGATATGG+CGG | - | chr1_2:18453519-18453538 | Msa0060680:intron | 40.0% | |
| ! | GTAAGTTTGTGTTTTTCCCC+AGG | - | chr1_2:18453585-18453604 | Msa0060680:intron | 40.0% |
| ! | CAATGGGAGATTTGAAACTG+AGG | - | chr1_2:18453762-18453781 | Msa0060680:intron | 40.0% |
| ! | GAAACTGAGGTATTCATGAC+TGG | - | chr1_2:18453775-18453794 | Msa0060680:intron | 40.0% |
| AATGTTGACCTCAAGACATG+CGG | + | chr1_2:18454088-18454107 | None:intergenic | 40.0% | |
| ATATACTGCTGTAATGGCCT+TGG | - | chr1_2:18454154-18454173 | Msa0060680:intron | 40.0% | |
| CAATTTGACACGACCGTTAT+TGG | - | chr1_2:18454184-18454203 | Msa0060680:intron | 40.0% | |
| ATTTGACACGACCGTTATTG+GGG | - | chr1_2:18454186-18454205 | Msa0060680:intron | 40.0% | |
| CGTTATTGGGGTAAGAAAGA+AGG | - | chr1_2:18454198-18454217 | Msa0060680:intron | 40.0% | |
| GGATTATTAAGAGGGGATGT+AGG | - | chr1_2:18454255-18454274 | Msa0060680:intron | 40.0% | |
| TTGTGAAGGAGAAATTCTCG+GGG | - | chr1_2:18454323-18454342 | Msa0060680:intron | 40.0% | |
| TATTTGTGAATCCAGGCTTC+AGG | - | chr1_2:18454592-18454611 | Msa0060680:intron | 40.0% | |
| GTACATAAAATCGGGCAAAG+TGG | - | chr1_2:18454634-18454653 | Msa0060680:intron | 40.0% | |
| GTGGAGTAACCTACATTTCT+AGG | - | chr1_2:18454653-18454672 | Msa0060680:intron | 40.0% | |
| ACTGAATTGGCGCTTAAAGT+TGG | - | chr1_2:18455000-18455019 | Msa0060680:intron | 40.0% | |
| AATTGGCGCTTAAAGTTGGA+AGG | - | chr1_2:18455004-18455023 | Msa0060680:intron | 40.0% | |
| !! | TTGGCCATCAATTTGCTAGA+TGG | - | chr1_2:18455226-18455245 | Msa0060680:five_prime_UTR | 40.0% |
| GTGGCTAGAATGACTAAGTT+AGG | - | chr1_2:18455248-18455267 | Msa0060680:five_prime_UTR | 40.0% | |
| AGTAAAAACCTGAGTGGAGG+TGG | + | chr1_2:18449833-18449852 | None:intergenic | 45.0% | |
| TCTTCTGTCTTCGACTAGAC+GGG | - | chr1_2:18450098-18450117 | Msa0060680:intron | 45.0% | |
| ! | AAGCCTTATCCCCACTAAGT+GGG | + | chr1_2:18450355-18450374 | None:intergenic | 45.0% |
| ! | AACTAGTTGAGTTGTCCTCC+TGG | - | chr1_2:18450643-18450662 | Msa0060680:intron | 45.0% |
| TCTACGACAAGGACCATGAT+TGG | - | chr1_2:18450720-18450739 | Msa0060680:intron | 45.0% | |
| ! | GGCGTATTTCAAAAGGTGCA+TGG | - | chr1_2:18450741-18450760 | Msa0060680:intron | 45.0% |
| CGACCTCACTTAGTGGAATA+AGG | + | chr1_2:18451045-18451064 | None:intergenic | 45.0% | |
| GACATCAATCCAGTGACACA+TGG | + | chr1_2:18451421-18451440 | None:intergenic | 45.0% | |
| AAGGACTCGTATGAGATCGT+CGG | + | chr1_2:18451525-18451544 | None:intergenic | 45.0% | |
| TTGCTCTTGCAGAAGATGCT+GGG | - | chr1_2:18451598-18451617 | Msa0060680:intron | 45.0% | |
| GCTTCGACTTCCATGTCAAA+TGG | + | chr1_2:18451837-18451856 | None:intergenic | 45.0% | |
| ! | CGAAGCTTATTTCTTGGCGA+AGG | - | chr1_2:18451851-18451870 | Msa0060680:CDS | 45.0% |
| ! | AGCTTATTTCTTGGCGAAGG+AGG | - | chr1_2:18451854-18451873 | Msa0060680:CDS | 45.0% |
| TATTTCTTGGCGAAGGAGGA+TGG | - | chr1_2:18451858-18451877 | Msa0060680:CDS | 45.0% | |
| ATGTCAGGAATGCTGCATTG+AGG | + | chr1_2:18452446-18452465 | None:intergenic | 45.0% | |
| AATGCAGCATTCCTGACATC+TGG | - | chr1_2:18452447-18452466 | Msa0060680:intron | 45.0% | |
| GAGAAACAGAACCAGATGTC+AGG | + | chr1_2:18452461-18452480 | None:intergenic | 45.0% | |
| TGCTCCGTGTTTACGTTTGT+TGG | - | chr1_2:18452879-18452898 | Msa0060680:intron | 45.0% | |
| ! | ACGTTTGTTGGATAAGTGGG+CGG | - | chr1_2:18452891-18452910 | Msa0060680:CDS | 45.0% |
| ! | GATACAGGTCACCAGCTTTT+AGG | + | chr1_2:18453119-18453138 | None:intergenic | 45.0% |
| AAAAGCTGGTGACCTGTATC+TGG | - | chr1_2:18453119-18453138 | Msa0060680:CDS | 45.0% | |
| ACAGATATGGCAAGTAGGAG+TGG | + | chr1_2:18453318-18453337 | None:intergenic | 45.0% | |
| CTCCTACTTGCCATATCTGT+AGG | - | chr1_2:18453318-18453337 | Msa0060680:intron | 45.0% | |
| ACCCTACAGATATGGCAAGT+AGG | + | chr1_2:18453323-18453342 | None:intergenic | 45.0% | |
| !! | GGACTAGTTCTTTACCAGCA+TGG | + | chr1_2:18453546-18453565 | None:intergenic | 45.0% |
| TGCTGGTAAAGAACTAGTCC+TGG | - | chr1_2:18453546-18453565 | Msa0060680:intron | 45.0% | |
| !! | TTTTTCCCCAGGTTGAGACT+AGG | - | chr1_2:18453596-18453615 | Msa0060680:intron | 45.0% |
| AAGAGTCCTAGTCTCAACCT+GGG | + | chr1_2:18453605-18453624 | None:intergenic | 45.0% | |
| CTATGCTGAAAGAAGCTGTG+CGG | - | chr1_2:18453734-18453753 | Msa0060680:intron | 45.0% | |
| ATGTTGACCTCAAGACATGC+GGG | + | chr1_2:18454087-18454106 | None:intergenic | 45.0% | |
| GGTCAGTTGGTTAGTAAGAG+AGG | - | chr1_2:18454234-18454253 | Msa0060680:intron | 45.0% | |
| TAGTAACATTGCCTGAAGCC+TGG | + | chr1_2:18454606-18454625 | None:intergenic | 45.0% | |
| ! | CTGATATGGGTTTTCTGCAG+TGG | - | chr1_2:18454928-18454947 | Msa0060680:intron | 45.0% |
| !!! | ACGCGGCATATGCCTTATTT+TGG | - | chr1_2:18455084-18455103 | Msa0060680:intron | 45.0% |
| !! | GCCATCAATTTGCTAGATGG+TGG | - | chr1_2:18455229-18455248 | Msa0060680:five_prime_UTR | 45.0% |
| GCCACCATCTAGCAAATTGA+TGG | + | chr1_2:18455233-18455252 | None:intergenic | 45.0% | |
| !! | TTATTATATTGATAAAAAAA+TGG | + | chr1_2:18452648-18452667 | None:intergenic | 5.0% |
| GTAGAAACGAATGGGTGGAG+TGG | - | chr1_2:18449575-18449594 | Msa0060680:three_prime_UTR | 50.0% | |
| AATGGGTGGAGTGGAGTAAC+TGG | - | chr1_2:18449584-18449603 | Msa0060680:three_prime_UTR | 50.0% | |
| ATGGGTGGAGTGGAGTAACT+GGG | - | chr1_2:18449585-18449604 | Msa0060680:three_prime_UTR | 50.0% | |
| GCGAGTAAAAACCTGAGTGG+AGG | + | chr1_2:18449836-18449855 | None:intergenic | 50.0% | |
| GGAGCGAGTAAAAACCTGAG+TGG | + | chr1_2:18449839-18449858 | None:intergenic | 50.0% | |
| TTATCCCCACTAAGTGGGGT+CGG | + | chr1_2:18450350-18450369 | None:intergenic | 50.0% | |
| ! | AGCCTTATCCCCACTAAGTG+GGG | + | chr1_2:18450354-18450373 | None:intergenic | 50.0% |
| ! | CAAGCCTTATCCCCACTAAG+TGG | + | chr1_2:18450356-18450375 | None:intergenic | 50.0% |
| CACTTAGTGGGGATAAGGCT+TGG | - | chr1_2:18450354-18450373 | Msa0060680:intron | 50.0% | |
| CAAAGGAGGCTTTACTGCGA+AGG | + | chr1_2:18451544-18451563 | None:intergenic | 50.0% | |
| CTTGCTCTTGCAGAAGATGC+TGG | - | chr1_2:18451597-18451616 | Msa0060680:intron | 50.0% | |
| TGCTCTTGCAGAAGATGCTG+GGG | - | chr1_2:18451599-18451618 | Msa0060680:intron | 50.0% | |
| GGCCACCATTCCATTTGACA+TGG | - | chr1_2:18451824-18451843 | Msa0060680:CDS | 50.0% | |
| TTTCTCTTGGATACTGGCCG+AGG | - | chr1_2:18452475-18452494 | Msa0060680:intron | 50.0% | |
| GATATGGCAAGTAGGAGTGG+AGG | + | chr1_2:18453315-18453334 | None:intergenic | 50.0% | |
| AGAGTCCTAGTCTCAACCTG+GGG | + | chr1_2:18453604-18453623 | None:intergenic | 50.0% | |
| CAAGAGTCCTAGTCTCAACC+TGG | + | chr1_2:18453606-18453625 | None:intergenic | 50.0% | |
| GGTTGAGACTAGGACTCTTG+AGG | - | chr1_2:18453606-18453625 | Msa0060680:intron | 50.0% | |
| GACTAGGACTCTTGAGGAAG+TGG | - | chr1_2:18453612-18453631 | Msa0060680:intron | 50.0% | |
| ! | AAGCTGTGCGGTTGGTCAAT+GGG | - | chr1_2:18453746-18453765 | Msa0060680:intron | 50.0% |
| ! | CTTAAAGTTGGAAGGCGCAC+CGG | - | chr1_2:18455012-18455031 | Msa0060680:CDS | 50.0% |
| ATATGCCGCGTAGTGAAGAC+CGG | + | chr1_2:18455075-18455094 | None:intergenic | 50.0% | |
| CTAGGTTTCCACCTCCACTC+AGG | - | chr1_2:18449822-18449841 | Msa0060680:three_prime_UTR | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr1_2:18450342-18450361 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr1_2:18450341-18450360 | Msa0060680:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr1_2:18450342-18450361 | Msa0060680:CDS | 55.0% | |
| GACCCCACTTAGTGGGGATA+AGG | - | chr1_2:18450349-18450368 | Msa0060680:intron | 55.0% | |
| ! | CATGTGCCGACCTCACTTAG+TGG | + | chr1_2:18451052-18451071 | None:intergenic | 55.0% |
| GCAGAAGATGCTGGGGATCT+AGG | - | chr1_2:18451606-18451625 | Msa0060680:intron | 55.0% | |
| AAGGAGGATGGCATCGTTGC+TGG | - | chr1_2:18451870-18451889 | Msa0060680:CDS | 55.0% | |
| TGGCAAGTAGGAGTGGAGGA+GGG | + | chr1_2:18453311-18453330 | None:intergenic | 55.0% | |
| ATGGCAAGTAGGAGTGGAGG+AGG | + | chr1_2:18453312-18453331 | None:intergenic | 55.0% | |
| CATGATATGGCGGTCCATGC+TGG | - | chr1_2:18453529-18453548 | Msa0060680:intron | 55.0% | |
| GCTGAAAGAAGCTGTGCGGT+TGG | - | chr1_2:18453738-18453757 | Msa0060680:intron | 55.0% | |
| ! | GAAGCTGTGCGGTTGGTCAA+TGG | - | chr1_2:18453745-18453764 | Msa0060680:intron | 55.0% |
| CAAGACATGCGGGCCACATT+TGG | + | chr1_2:18454077-18454096 | None:intergenic | 55.0% | |
| AATGTGGCCCGCATGTCTTG+AGG | - | chr1_2:18454077-18454096 | Msa0060680:intron | 55.0% | |
| GTAGCCGACCCCACTTAGTG+GGG | - | chr1_2:18450343-18450362 | Msa0060680:CDS | 60.0% | |
| GCAAGTAGGAGTGGAGGAGG+GGG | + | chr1_2:18453309-18453328 | None:intergenic | 60.0% | |
| GGCAAGTAGGAGTGGAGGAG+GGG | + | chr1_2:18453310-18453329 | None:intergenic | 60.0% | |
| CCTTGCCGGTCTTCACTACG+CGG | - | chr1_2:18455067-18455086 | Msa0060680:intron | 60.0% | |
| CCGCGTAGTGAAGACCGGCA+AGG | + | chr1_2:18455070-18455089 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18449525 | 18455449 | 18449525 | ID=Msa0060680;Name=Msa0060680 |
| chr1_2 | mRNA | 18449525 | 18455449 | 18449525 | ID=Msa0060680-mRNA-1;Parent=Msa0060680;Name=Msa0060680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=233|1|1|1|0.8|0.90|11|405|374 |
| chr1_2 | exon | 18449525 | 18450026 | 18449525 | ID=Msa0060680-mRNA-1:exon:7195;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18450300 | 18450367 | 18450300 | ID=Msa0060680-mRNA-1:exon:7194;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18451191 | 18451367 | 18451191 | ID=Msa0060680-mRNA-1:exon:7193;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18451804 | 18451956 | 18451804 | ID=Msa0060680-mRNA-1:exon:7192;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18452062 | 18452145 | 18452062 | ID=Msa0060680-mRNA-1:exon:7191;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18452688 | 18452770 | 18452688 | ID=Msa0060680-mRNA-1:exon:7190;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18452885 | 18452948 | 18452885 | ID=Msa0060680-mRNA-1:exon:7189;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18453033 | 18453166 | 18453033 | ID=Msa0060680-mRNA-1:exon:7188;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18453347 | 18453489 | 18453347 | ID=Msa0060680-mRNA-1:exon:7187;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18455009 | 18455044 | 18455009 | ID=Msa0060680-mRNA-1:exon:7186;Parent=Msa0060680-mRNA-1 |
| chr1_2 | exon | 18455131 | 18455449 | 18455131 | ID=Msa0060680-mRNA-1:exon:7185;Parent=Msa0060680-mRNA-1 |
| chr1_2 | five_prime_UTR | 18455217 | 18455449 | 18455217 | ID=Msa0060680-mRNA-1:five_prime_utr;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18455131 | 18455216 | 18455131 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18455009 | 18455044 | 18455009 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18453347 | 18453489 | 18453347 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18453033 | 18453166 | 18453033 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18452885 | 18452948 | 18452885 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18452688 | 18452770 | 18452688 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18452062 | 18452145 | 18452062 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18451804 | 18451956 | 18451804 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18451191 | 18451367 | 18451191 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18450300 | 18450367 | 18450300 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | CDS | 18449930 | 18450026 | 18449930 | ID=Msa0060680-mRNA-1:cds;Parent=Msa0060680-mRNA-1 |
| chr1_2 | three_prime_UTR | 18449525 | 18449929 | 18449525 | ID=Msa0060680-mRNA-1:three_prime_utr;Parent=Msa0060680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
