AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0139740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139740 MtrunA17_Chr5g0399371 89.751 361 18 3 1 354 1 349 0.0 660
Msa0139740 MtrunA17_Chr7g0220151 71.963 321 78 1 34 354 16 324 1.45e-169 475
Msa0139740 MtrunA17_Chr1g0146321 25.616 203 142 3 144 344 91 286 7.26e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0139740 AT4G17360.1 61.357 339 109 3 26 354 2 328 1.54e-153 435
Msa0139740 AT5G47435.1 61.677 334 111 3 26 354 2 323 3.33e-153 434
Msa0139740 AT5G47435.2 61.677 334 111 3 26 354 2 323 3.33e-153 434
Msa0139740 AT4G17360.2 59.761 251 91 2 26 266 2 252 2.85e-110 322
Msa0139740 AT4G17360.3 57.798 218 82 2 26 233 2 219 2.33e-90 271
Msa0139740 AT1G31220.1 25.121 207 137 4 144 343 77 272 5.29e-13 69.3

Find 67 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGAATCACTTCGCTTTC+TGG 0.117075 1_3:-73588228 None:intergenic
CATGTAATTGTTCAATTATT+TGG 0.131222 1_3:-73586803 None:intergenic
AAGAAGATTACCTGCTTAAA+TGG 0.182244 1_3:-73588556 None:intergenic
AGTTGTTCAATTACACATTT+TGG 0.191040 1_3:-73589130 None:intergenic
GATGCAGGTGTGAAATTAAT+TGG 0.258885 1_3:+73588738 Msa0139740:CDS
CGGATGTTGTTCATTTCATT+TGG 0.291089 1_3:-73586880 None:intergenic
ATTTAAGCAGGTAATCTTCT+TGG 0.291519 1_3:+73588558 Msa0139740:CDS
TTCACCATTTGTTCAATAAT+AGG 0.298667 1_3:-73588801 None:intergenic
TGGATATCACTTGTGTAATT+AGG 0.320225 1_3:+73588086 Msa0139740:CDS
TGCCTGTTGCCATCATTTAG+AGG 0.335658 1_3:+73588526 Msa0139740:CDS
AAGTTCAGGAAAATAATTAA+TGG 0.336335 1_3:+73586767 Msa0139740:five_prime_UTR
TTTAAGCAGGTAATCTTCTT+GGG 0.345527 1_3:+73588559 Msa0139740:CDS
ACTGTAATTTCTGACAAGTT+TGG 0.369105 1_3:-73586926 None:intergenic
AGAACAGCAATCTTATACTT+AGG 0.389913 1_3:-73587446 None:intergenic
TCGTCTTCCATTTGCATTCG+AGG 0.391948 1_3:-73587359 None:intergenic
TGTTCTTTGCATCTGTTCTC+AGG 0.412713 1_3:-73589226 None:intergenic
TAGACCACGTATATAAGTTC+AGG 0.421366 1_3:+73586753 None:intergenic
CGCTTTCTGGACCTCTATCA+TGG 0.423861 1_3:-73588215 None:intergenic
GCAGAGGTTTGTGCAGAAAT+CGG 0.428242 1_3:+73588945 Msa0139740:CDS
AATAATGTTACCACCATTTG+AGG 0.432255 1_3:-73587164 None:intergenic
AGTTCAGGAAAATAATTAAT+GGG 0.433866 1_3:+73586768 Msa0139740:five_prime_UTR
TGTTGGCAGGCCTTTGATGC+AGG 0.452558 1_3:+73588723 Msa0139740:intron
TCCATCCTGCCATCCGTGTA+AGG 0.455247 1_3:-73588053 None:intergenic
AGACATGGATACCATGGGTT+AGG 0.456246 1_3:-73586987 None:intergenic
TGCCTCTAAATGATGGCAAC+AGG 0.456960 1_3:-73588528 None:intergenic
TGCTGTTCTTGCGTCAAGCC+AGG 0.464782 1_3:+73587460 Msa0139740:CDS
GATTACCTGCTTAAATGGAT+TGG 0.472493 1_3:-73588551 None:intergenic
TCAGATTGCATTGCCTCAAA+TGG 0.473487 1_3:+73587151 Msa0139740:CDS
TCCAGTTCCTTCCTAACCCA+TGG 0.492046 1_3:+73586976 Msa0139740:CDS
TAAATGGCCTCGAATGCAAA+TGG 0.495596 1_3:+73587352 Msa0139740:CDS
TGATTCCTTACACGGATGGC+AGG 0.499112 1_3:+73588048 Msa0139740:CDS
TGGACCTATTATTGAACAAA+TGG 0.500868 1_3:+73588797 Msa0139740:CDS
GTGACTGAAGGACGTGATGC+TGG 0.501654 1_3:+73588777 Msa0139740:CDS
CAAAGAACATTTAAATTAGA+CGG 0.505615 1_3:+73589240 Msa0139740:three_prime_UTR
GAATGTGAGGCTTCGCCGTA+AGG 0.507920 1_3:+73588582 Msa0139740:CDS
TGAAACCAGAACATAATCTT+CGG 0.513108 1_3:-73586900 None:intergenic
TAATTTCACACCTGCATCAA+AGG 0.519469 1_3:-73588733 None:intergenic
TGAGAAACAATGTCTGTCAA+TGG 0.529058 1_3:+73588975 Msa0139740:CDS
AGGCACCAATCCATTTAAGC+AGG 0.530213 1_3:+73588546 Msa0139740:CDS
AGAAGAGGATATCTTAAAGC+TGG 0.532640 1_3:+73588308 Msa0139740:CDS
AACATCCGAAGATTATGTTC+TGG 0.544646 1_3:+73586895 Msa0139740:CDS
TGTCTAATTGATTCCTTACA+CGG 0.549349 1_3:+73588040 Msa0139740:CDS
TAAATGATGGCAACAGGCAA+TGG 0.555032 1_3:-73588522 None:intergenic
AAAAGAGAATAAAAGAGAAG+AGG 0.557542 1_3:+73588293 Msa0139740:CDS
CTCATAAAGATGACTTGCAG+AGG 0.558739 1_3:+73588929 Msa0139740:CDS
TTGACAGGTTAAAAGTGTCA+AGG 0.561404 1_3:-73589195 None:intergenic
ACCATGGGTTAGGAAGGAAC+TGG 0.564927 1_3:-73586977 None:intergenic
TTTAACAGTAACCATGATAG+AGG 0.567421 1_3:+73588204 Msa0139740:intron
ATGGATACCATGGGTTAGGA+AGG 0.575698 1_3:-73586983 None:intergenic
TTAAGCAGGTAATCTTCTTG+GGG 0.579261 1_3:+73588560 Msa0139740:CDS
ATTACACAAGTGATATCCAC+TGG 0.579370 1_3:-73588082 None:intergenic
TAATCTTCTTGGGGAATGTG+AGG 0.587182 1_3:+73588569 Msa0139740:CDS
TCCTTACACGGATGGCAGGA+TGG 0.590140 1_3:+73588052 Msa0139740:CDS
TAATTGATTCCTTACACGGA+TGG 0.590474 1_3:+73588044 Msa0139740:CDS
ATTGAAAGACATGGATACCA+TGG 0.597080 1_3:-73586993 None:intergenic
TTGCAGGGGTACAACTCAGA+AGG 0.605666 1_3:+73590125 Msa0139740:intron
GATTGCATTGCCTCAAATGG+TGG 0.622165 1_3:+73587154 Msa0139740:CDS
TTATACTTAGGATCAAGAGC+TGG 0.624265 1_3:-73587434 None:intergenic
GGATTGGTGCCTCTAAATGA+TGG 0.633179 1_3:-73588535 None:intergenic
AGTACTTGCAAGGTATACGA+AGG 0.634867 1_3:+73588350 Msa0139740:CDS
TTACAGGACATTGAAAGACA+TGG 0.637625 1_3:-73587002 None:intergenic
TTGAAAGACATGGATACCAT+GGG 0.638453 1_3:-73586992 None:intergenic
GTAAGGAATCAATTAGACAA+TGG 0.650271 1_3:-73588036 None:intergenic
AGGGGTACAACTCAGAAGGA+TGG 0.650570 1_3:+73590129 Msa0139740:intron
AATAATTGAACAATTACATG+TGG 0.654171 1_3:+73586806 Msa0139740:exon
GCAGGATGGAAGACTTCCAG+TGG 0.665552 1_3:+73588066 Msa0139740:CDS
TGGTGGTAACATTATTGCTG+CGG 0.706543 1_3:+73587171 Msa0139740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATAATTTATATGTATAA+AGG + chr1_3:73587756-73587775 Msa0139740:intron 10.0%
!! AAAAAAATAAACATGAATAA+AGG + chr1_3:73589893-73589912 Msa0139740:intron 10.0%
!! AAATGATGATAATAATTCAA+TGG - chr1_3:73587049-73587068 None:intergenic 15.0%
!!! TATTTTTTTGTTTTTGTGAT+AGG + chr1_3:73587102-73587121 Msa0139740:intron 15.0%
!! TTTATTATTCAAAAATTGAG+AGG - chr1_3:73587718-73587737 None:intergenic 15.0%
!!! ATTTTTGAATAATAAAGACA+TGG + chr1_3:73587722-73587741 Msa0139740:intron 15.0%
!! AATTTCTTTCGAAAAATAAA+AGG + chr1_3:73587863-73587882 Msa0139740:intron 15.0%
!!! ACCAAAAATGAATAATTTTA+AGG + chr1_3:73587937-73587956 Msa0139740:intron 15.0%
!!! TCCTTAAAATTATTCATTTT+TGG - chr1_3:73587941-73587960 None:intergenic 15.0%
!!! GTTGTTTTTAAATAATGATA+AGG - chr1_3:73588273-73588292 None:intergenic 15.0%
!!! GTACATTATTTTTTTTTTGA+GGG - chr1_3:73589103-73589122 None:intergenic 15.0%
!! CTAAGTTATTGTATAATAAT+TGG + chr1_3:73589402-73589421 Msa0139740:intron 15.0%
!! AAGTTCAGGAAAATAATTAA+TGG + chr1_3:73586767-73586786 Msa0139740:five_prime_UTR 20.0%
!! AGTTCAGGAAAATAATTAAT+GGG + chr1_3:73586768-73586787 Msa0139740:five_prime_UTR 20.0%
!! CATGTAATTGTTCAATTATT+TGG - chr1_3:73586806-73586825 None:intergenic 20.0%
!! AATAATTGAACAATTACATG+TGG + chr1_3:73586806-73586825 Msa0139740:exon 20.0%
!! TTTACATACATATAGATAAC+AGG - chr1_3:73587509-73587528 None:intergenic 20.0%
!! TTCTATAAATAGAGTTAGTT+AGG + chr1_3:73587571-73587590 Msa0139740:intron 20.0%
!! CATATAAAATGAAGATAACA+TGG - chr1_3:73587605-73587624 None:intergenic 20.0%
!! TTTATCAATGATGAATACAT+GGG - chr1_3:73587650-73587669 None:intergenic 20.0%
!! ATTTATCAATGATGAATACA+TGG - chr1_3:73587651-73587670 None:intergenic 20.0%
!!! ATTTTTCGAAAGAAATTGAA+AGG - chr1_3:73587860-73587879 None:intergenic 20.0%
!!! TATTTTCTTAAGAGTAATTG+CGG + chr1_3:73588426-73588445 Msa0139740:intron 20.0%
!!! TAATATCTAGCAACTTTTTA+AGG + chr1_3:73588470-73588489 Msa0139740:CDS 20.0%
!! TTTAATATGATAGGTTATGT+TGG + chr1_3:73588706-73588725 Msa0139740:intron 20.0%
!!! GGTACATTATTTTTTTTTTG+AGG - chr1_3:73589104-73589123 None:intergenic 20.0%
!!! AATTACACATTTTGGTAAAA+TGG - chr1_3:73589125-73589144 None:intergenic 20.0%
!! CAAAGAACATTTAAATTAGA+CGG + chr1_3:73589240-73589259 Msa0139740:three_prime_UTR 20.0%
!!! GATTTTTCTACGAAAATTTA+TGG - chr1_3:73589757-73589776 None:intergenic 20.0%
!!! TAAATTTTCGTAGAAAAATC+TGG + chr1_3:73589757-73589776 Msa0139740:intron 20.0%
!! ATAAAGGATGTTAACAATTT+CGG + chr1_3:73589909-73589928 Msa0139740:intron 20.0%
!! TATAAAATTGCAATATAACG+AGG - chr1_3:73589998-73590017 None:intergenic 20.0%
! AAACATTTCACATGTGATAT+TGG - chr1_3:73587078-73587097 None:intergenic 25.0%
!! TTTTTGTGATAGGATTCAAT+TGG + chr1_3:73587112-73587131 Msa0139740:intron 25.0%
!! GTTTTTGTACCTCAAAATAA+AGG + chr1_3:73587196-73587215 Msa0139740:CDS 25.0%
!! TTGTTTTCGATCATGTTAAA+TGG + chr1_3:73587336-73587355 Msa0139740:CDS 25.0%
! AAAAGAGAATAAAAGAGAAG+AGG + chr1_3:73588293-73588312 Msa0139740:CDS 25.0%
! AATAAGCTAAAAACACCTTA+CGG - chr1_3:73588600-73588619 None:intergenic 25.0%
! CAAAGTTGTTTATCCAAAAA+TGG + chr1_3:73588673-73588692 Msa0139740:intron 25.0%
! GCAAATGTGTTTAATATGAT+AGG + chr1_3:73588697-73588716 Msa0139740:intron 25.0%
! TTCACCATTTGTTCAATAAT+AGG - chr1_3:73588804-73588823 None:intergenic 25.0%
!! ACAGTATTCTTTTCTTCATA+TGG - chr1_3:73589033-73589052 None:intergenic 25.0%
!! AAGAATACTGTTGTATTTTG+AGG + chr1_3:73589042-73589061 Msa0139740:CDS 25.0%
!!! AGAATACTGTTGTATTTTGA+GGG + chr1_3:73589043-73589062 Msa0139740:CDS 25.0%
!!! TTTTTTTTGAGGGAGTAAAA+TGG - chr1_3:73589093-73589112 None:intergenic 25.0%
!! AGTTGTTCAATTACACATTT+TGG - chr1_3:73589133-73589152 None:intergenic 25.0%
! GTACGTATTTATAATCAGAT+TGG + chr1_3:73589262-73589281 Msa0139740:intron 25.0%
!!! TTTTTGTAAAGGTGTAGATA+TGG + chr1_3:73589317-73589336 Msa0139740:intron 25.0%
! AAAACATCACATTATTATGC+AGG - chr1_3:73589355-73589374 None:intergenic 25.0%
!! TGCATAATAATGTGATGTTT+TGG + chr1_3:73589354-73589373 Msa0139740:intron 25.0%
!!! TCTTTCTGTTTTTTCGTTTT+CGG - chr1_3:73589552-73589571 None:intergenic 25.0%
! TAAAACTAACAAGAAACACA+AGG + chr1_3:73589622-73589641 Msa0139740:intron 25.0%
!! AGGCATAAAACTAATAGTTT+TGG + chr1_3:73589642-73589661 Msa0139740:intron 25.0%
! ATAACATGGTTAACAAATAG+AGG - chr1_3:73589705-73589724 None:intergenic 25.0%
!! CCAACTAAAATTTTGCTAAA+TGG - chr1_3:73589873-73589892 None:intergenic 25.0%
!!! CCATTTAGCAAAATTTTAGT+TGG + chr1_3:73589870-73589889 Msa0139740:intron 25.0%
! GTATATTTCAATTGTGTCAA+TGG - chr1_3:73589972-73589991 None:intergenic 25.0%
!! TTGCATCTAATACATGTTTT+TGG + chr1_3:73590101-73590120 Msa0139740:intron 25.0%
TGAAACCAGAACATAATCTT+CGG - chr1_3:73586903-73586922 None:intergenic 30.0%
ACTGTAATTTCTGACAAGTT+TGG - chr1_3:73586929-73586948 None:intergenic 30.0%
AATGGATGTGAGAATATGAA+TGG - chr1_3:73587031-73587050 None:intergenic 30.0%
AATAATGTTACCACCATTTG+AGG - chr1_3:73587167-73587186 None:intergenic 30.0%
!!! TAGAAGAGTCCTTTATTTTG+AGG - chr1_3:73587208-73587227 None:intergenic 30.0%
AGAACAGCAATCTTATACTT+AGG - chr1_3:73587449-73587468 None:intergenic 30.0%
AACATTTAATAACGTGTACC+TGG - chr1_3:73587481-73587500 None:intergenic 30.0%
GTAAGGAATCAATTAGACAA+TGG - chr1_3:73588039-73588058 None:intergenic 30.0%
! TGTCTAATTGATTCCTTACA+CGG + chr1_3:73588040-73588059 Msa0139740:CDS 30.0%
TGGATATCACTTGTGTAATT+AGG + chr1_3:73588086-73588105 Msa0139740:CDS 30.0%
TTTAACAGTAACCATGATAG+AGG + chr1_3:73588204-73588223 Msa0139740:intron 30.0%
! AAGTGATTCGTTTTCTTGAT+AGG + chr1_3:73588238-73588257 Msa0139740:CDS 30.0%
!!! CTGATTTTTTAGTACTTGCA+AGG + chr1_3:73588340-73588359 Msa0139740:CDS 30.0%
AAGAAGATTACCTGCTTAAA+TGG - chr1_3:73588559-73588578 None:intergenic 30.0%
ATTTAAGCAGGTAATCTTCT+TGG + chr1_3:73588558-73588577 Msa0139740:CDS 30.0%
TTTAAGCAGGTAATCTTCTT+GGG + chr1_3:73588559-73588578 Msa0139740:CDS 30.0%
! AAACACATTTGCTCCATTTT+TGG - chr1_3:73588689-73588708 None:intergenic 30.0%
TGGACCTATTATTGAACAAA+TGG + chr1_3:73588797-73588816 Msa0139740:CDS 30.0%
!!! AATAATGTGATGTTTTGGTC+TGG + chr1_3:73589359-73589378 Msa0139740:intron 30.0%
CAACAGTGACAAATATATCT+TGG - chr1_3:73589433-73589452 None:intergenic 30.0%
GATATATTTGTCACTGTTGT+TGG + chr1_3:73589434-73589453 Msa0139740:intron 30.0%
!!! TTCGGTTTTAACTGTTTTAC+TGG - chr1_3:73589534-73589553 None:intergenic 30.0%
! TTTTCGTAGAAAAATCTGGT+TGG + chr1_3:73589761-73589780 Msa0139740:intron 30.0%
TAAGCCTAATATGCTCTTAA+TGG + chr1_3:73589839-73589858 Msa0139740:intron 30.0%
! AATTTTGCTAAATGGCCAAT+TGG - chr1_3:73589865-73589884 None:intergenic 30.0%
! GAAGCTTCTTTCATGTTTTT+GGG - chr1_3:73590046-73590065 None:intergenic 30.0%
! TGAAGCTTCTTTCATGTTTT+TGG - chr1_3:73590047-73590066 None:intergenic 30.0%
CGGATGTTGTTCATTTCATT+TGG - chr1_3:73586883-73586902 None:intergenic 35.0%
AACATCCGAAGATTATGTTC+TGG + chr1_3:73586895-73586914 Msa0139740:CDS 35.0%
TTGAAAGACATGGATACCAT+GGG - chr1_3:73586995-73587014 None:intergenic 35.0%
ATTGAAAGACATGGATACCA+TGG - chr1_3:73586996-73587015 None:intergenic 35.0%
TTACAGGACATTGAAAGACA+TGG - chr1_3:73587005-73587024 None:intergenic 35.0%
AGAATATGAATGGCACTTAC+AGG - chr1_3:73587021-73587040 None:intergenic 35.0%
TTATACTTAGGATCAAGAGC+TGG - chr1_3:73587437-73587456 None:intergenic 35.0%
CATGAACATGCTTATTCACA+AGG + chr1_3:73587895-73587914 Msa0139740:intron 35.0%
TGATGCAATTGTCTACACTT+TGG - chr1_3:73587978-73587997 None:intergenic 35.0%
! TAATTGATTCCTTACACGGA+TGG + chr1_3:73588044-73588063 Msa0139740:CDS 35.0%
ATTACACAAGTGATATCCAC+TGG - chr1_3:73588085-73588104 None:intergenic 35.0%
AGAAGAGGATATCTTAAAGC+TGG + chr1_3:73588308-73588327 Msa0139740:CDS 35.0%
!! AGCAACTTTTTAAGGAGCTA+TGG + chr1_3:73588478-73588497 Msa0139740:CDS 35.0%
!! CTTTTTAAGGAGCTATGGAA+AGG + chr1_3:73588483-73588502 Msa0139740:CDS 35.0%
GATTACCTGCTTAAATGGAT+TGG - chr1_3:73588554-73588573 None:intergenic 35.0%
TTAAGCAGGTAATCTTCTTG+GGG + chr1_3:73588560-73588579 Msa0139740:CDS 35.0%
ATATGATAGGTTATGTTGGC+AGG + chr1_3:73588710-73588729 Msa0139740:intron 35.0%
TAATTTCACACCTGCATCAA+AGG - chr1_3:73588736-73588755 None:intergenic 35.0%
GATGCAGGTGTGAAATTAAT+TGG + chr1_3:73588738-73588757 Msa0139740:CDS 35.0%
!! ACAAGTCATTTTGTGACTGA+AGG + chr1_3:73588765-73588784 Msa0139740:CDS 35.0%
TGAGAAACAATGTCTGTCAA+TGG + chr1_3:73588975-73588994 Msa0139740:CDS 35.0%
!! TTGACAGGTTAAAAGTGTCA+AGG - chr1_3:73589198-73589217 None:intergenic 35.0%
!! TCTCAGGTGAAAATTTTGAC+AGG - chr1_3:73589213-73589232 None:intergenic 35.0%
!!! TGCTGCTGAGTTTTTTGTAA+AGG + chr1_3:73589306-73589325 Msa0139740:intron 35.0%
!!! ATGTTTTGGTCTGGTTTATG+CGG + chr1_3:73589368-73589387 Msa0139740:intron 35.0%
TCCAAACTGTATACTCTTTG+AGG + chr1_3:73589467-73589486 Msa0139740:intron 35.0%
CCAAACTGTATACTCTTTGA+GGG + chr1_3:73589468-73589487 Msa0139740:intron 35.0%
ATCCATAGATTCAATACCAG+TGG + chr1_3:73589491-73589510 Msa0139740:intron 35.0%
!!! ATAGTTTTGGTTCTAGTCAC+TGG + chr1_3:73589655-73589674 Msa0139740:intron 35.0%
GATGCTTTGCATCAATAACA+TGG - chr1_3:73589719-73589738 None:intergenic 35.0%
! TTGGCCATTAAGAGCATATT+AGG - chr1_3:73589846-73589865 None:intergenic 35.0%
ATATGCTCTTAATGGCCAAT+TGG + chr1_3:73589847-73589866 Msa0139740:intron 35.0%
CAATTGTGTCAATGGTAGTT+TGG - chr1_3:73589964-73589983 None:intergenic 35.0%
!!! AATACATGTTTTTGGCTTGC+AGG + chr1_3:73590109-73590128 Msa0139740:intron 35.0%
!!! ATACATGTTTTTGGCTTGCA+GGG + chr1_3:73590110-73590129 Msa0139740:intron 35.0%
TCAGATTGCATTGCCTCAAA+TGG + chr1_3:73587151-73587170 Msa0139740:CDS 40.0%
TGGTGGTAACATTATTGCTG+CGG + chr1_3:73587171-73587190 Msa0139740:CDS 40.0%
TAAATGGCCTCGAATGCAAA+TGG + chr1_3:73587352-73587371 Msa0139740:CDS 40.0%
GTCCTGCAACAAAATAGAGA+GGG - chr1_3:73588017-73588036 None:intergenic 40.0%
AAACGAATCACTTCGCTTTC+TGG - chr1_3:73588231-73588250 None:intergenic 40.0%
AGTACTTGCAAGGTATACGA+AGG + chr1_3:73588350-73588369 Msa0139740:CDS 40.0%
TAAATGATGGCAACAGGCAA+TGG - chr1_3:73588525-73588544 None:intergenic 40.0%
TAATCTTCTTGGGGAATGTG+AGG + chr1_3:73588569-73588588 Msa0139740:CDS 40.0%
! CTCATAAAGATGACTTGCAG+AGG + chr1_3:73588929-73588948 Msa0139740:CDS 40.0%
TGTTCTTTGCATCTGTTCTC+AGG - chr1_3:73589229-73589248 None:intergenic 40.0%
! CCCTCAAAGAGTATACAGTT+TGG - chr1_3:73589471-73589490 None:intergenic 40.0%
! CTCCACTGGTATTGAATCTA+TGG - chr1_3:73589496-73589515 None:intergenic 40.0%
TAGATTCAATACCAGTGGAG+AGG + chr1_3:73589496-73589515 Msa0139740:intron 40.0%
AGATTCAATACCAGTGGAGA+GGG + chr1_3:73589497-73589516 Msa0139740:intron 40.0%
!! GTCAATGGTAGTTTGGTGTT+AGG - chr1_3:73589957-73589976 None:intergenic 40.0%
ACATGAAAGAAGCTTCATCC+AGG + chr1_3:73590050-73590069 Msa0139740:intron 40.0%
GATTATCCATAAAGCCAACC+TGG - chr1_3:73590071-73590090 None:intergenic 40.0%
!!! TACATGTTTTTGGCTTGCAG+GGG + chr1_3:73590111-73590130 Msa0139740:intron 40.0%
!! ATGGATACCATGGGTTAGGA+AGG - chr1_3:73586986-73587005 None:intergenic 45.0%
AGACATGGATACCATGGGTT+AGG - chr1_3:73586990-73587009 None:intergenic 45.0%
GATTGCATTGCCTCAAATGG+TGG + chr1_3:73587154-73587173 Msa0139740:CDS 45.0%
TCGTCTTCCATTTGCATTCG+AGG - chr1_3:73587362-73587381 None:intergenic 45.0%
! TGCCCTCTCTATTTTGTTGC+AGG + chr1_3:73588012-73588031 Msa0139740:intron 45.0%
GGTCCTGCAACAAAATAGAG+AGG - chr1_3:73588018-73588037 None:intergenic 45.0%
TGCCTGTTGCCATCATTTAG+AGG + chr1_3:73588526-73588545 Msa0139740:CDS 45.0%
TGCCTCTAAATGATGGCAAC+AGG - chr1_3:73588531-73588550 None:intergenic 45.0%
! GGATTGGTGCCTCTAAATGA+TGG - chr1_3:73588538-73588557 None:intergenic 45.0%
AGGCACCAATCCATTTAAGC+AGG + chr1_3:73588546-73588565 Msa0139740:CDS 45.0%
! GCTACAACCTTTTCAACTGC+AGG + chr1_3:73588894-73588913 Msa0139740:intron 45.0%
CTCTCAACCTGCAGTTGAAA+AGG - chr1_3:73588904-73588923 None:intergenic 45.0%
GCAGAGGTTTGTGCAGAAAT+CGG + chr1_3:73588945-73588964 Msa0139740:CDS 45.0%
! TGGTCTGGTTTATGCGGTTT+CGG + chr1_3:73589374-73589393 Msa0139740:intron 45.0%
AGGGGAAACTCCACTAAAAG+CGG - chr1_3:73589787-73589806 None:intergenic 45.0%
TTGTGCAAAAGAGAGCCTTG+CGG - chr1_3:73589815-73589834 None:intergenic 45.0%
GAAAGAAGCTTCATCCAGGT+TGG + chr1_3:73590054-73590073 Msa0139740:intron 45.0%
!! CTTCATCCAGGTTGGCTTTA+TGG + chr1_3:73590062-73590081 Msa0139740:intron 45.0%
TCCAGTTCCTTCCTAACCCA+TGG + chr1_3:73586976-73586995 Msa0139740:CDS 50.0%
!! ACCATGGGTTAGGAAGGAAC+TGG - chr1_3:73586980-73586999 None:intergenic 50.0%
TGATTCCTTACACGGATGGC+AGG + chr1_3:73588048-73588067 Msa0139740:CDS 50.0%
CGCTTTCTGGACCTCTATCA+TGG - chr1_3:73588218-73588237 None:intergenic 50.0%
ATACCAGTGGAGAGGGAAAG+AGG + chr1_3:73589504-73589523 Msa0139740:intron 50.0%
TTTCCTCTTTCCCTCTCCAC+TGG - chr1_3:73589510-73589529 None:intergenic 50.0%
!!! ATCTGGTTGGCCGCTTTTAG+TGG + chr1_3:73589774-73589793 Msa0139740:intron 50.0%
CAAAAGAGAGCCTTGCGGTT+GGG - chr1_3:73589810-73589829 None:intergenic 50.0%
! TTGCAGGGGTACAACTCAGA+AGG + chr1_3:73590125-73590144 Msa0139740:intron 50.0%
! AGGGGTACAACTCAGAAGGA+TGG + chr1_3:73590129-73590148 Msa0139740:intron 50.0%
TGCTGTTCTTGCGTCAAGCC+AGG + chr1_3:73587460-73587479 Msa0139740:CDS 55.0%
TCCTTACACGGATGGCAGGA+TGG + chr1_3:73588052-73588071 Msa0139740:CDS 55.0%
TCCATCCTGCCATCCGTGTA+AGG - chr1_3:73588056-73588075 None:intergenic 55.0%
GCAGGATGGAAGACTTCCAG+TGG + chr1_3:73588066-73588085 Msa0139740:CDS 55.0%
GAATGTGAGGCTTCGCCGTA+AGG + chr1_3:73588582-73588601 Msa0139740:CDS 55.0%
TGTTGGCAGGCCTTTGATGC+AGG + chr1_3:73588723-73588742 Msa0139740:intron 55.0%
GTGACTGAAGGACGTGATGC+TGG + chr1_3:73588777-73588796 Msa0139740:CDS 55.0%
GCAAAAGAGAGCCTTGCGGT+TGG - chr1_3:73589811-73589830 None:intergenic 55.0%
AGTTTCCCCTCCCAACCGCA+AGG + chr1_3:73589797-73589816 Msa0139740:intron 60.0%
AGAGAGCCTTGCGGTTGGGA+GGG - chr1_3:73589806-73589825 None:intergenic 60.0%
AAGAGAGCCTTGCGGTTGGG+AGG - chr1_3:73589807-73589826 None:intergenic 60.0%
GAGAGCCTTGCGGTTGGGAG+GGG - chr1_3:73589805-73589824 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 73586758 73590210 73586758 ID=Msa0139740;Name=Msa0139740
chr1_3 mRNA 73586758 73590210 73586758 ID=Msa0139740-mRNA-1;Parent=Msa0139740;Name=Msa0139740-mRNA-1;_AED=0.17;_eAED=0.17;_QI=65|0.87|0.88|1|0.87|0.77|9|279|354
chr1_3 exon 73586758 73587020 73586758 ID=Msa0139740-mRNA-1:exon:25634;Parent=Msa0139740-mRNA-1
chr1_3 exon 73587124 73587236 73587124 ID=Msa0139740-mRNA-1:exon:25635;Parent=Msa0139740-mRNA-1
chr1_3 exon 73587331 73587481 73587331 ID=Msa0139740-mRNA-1:exon:25636;Parent=Msa0139740-mRNA-1
chr1_3 exon 73588034 73588107 73588034 ID=Msa0139740-mRNA-1:exon:25637;Parent=Msa0139740-mRNA-1
chr1_3 exon 73588212 73588371 73588212 ID=Msa0139740-mRNA-1:exon:25638;Parent=Msa0139740-mRNA-1
chr1_3 exon 73588469 73588603 73588469 ID=Msa0139740-mRNA-1:exon:25639;Parent=Msa0139740-mRNA-1
chr1_3 exon 73588732 73588818 73588732 ID=Msa0139740-mRNA-1:exon:25640;Parent=Msa0139740-mRNA-1
chr1_3 exon 73588916 73589261 73588916 ID=Msa0139740-mRNA-1:exon:25641;Parent=Msa0139740-mRNA-1
chr1_3 exon 73590131 73590210 73590131 ID=Msa0139740-mRNA-1:exon:25642;Parent=Msa0139740-mRNA-1
chr1_3 five_prime_UTR 73586758 73586822 73586758 ID=Msa0139740-mRNA-1:five_prime_utr;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73586823 73587020 73586823 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73587124 73587236 73587124 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73587331 73587481 73587331 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73588034 73588107 73588034 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73588212 73588371 73588212 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73588469 73588603 73588469 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73588732 73588818 73588732 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 CDS 73588916 73589062 73588916 ID=Msa0139740-mRNA-1:cds;Parent=Msa0139740-mRNA-1
chr1_3 three_prime_UTR 73589063 73589261 73589063 ID=Msa0139740-mRNA-1:three_prime_utr;Parent=Msa0139740-mRNA-1
chr1_3 three_prime_UTR 73590131 73590210 73590131 ID=Msa0139740-mRNA-1:three_prime_utr;Parent=Msa0139740-mRNA-1
Gene Sequence

>Msa0139740

ATGTGGTGTGTGAACACAATTGCACAACTCAAATTAAACAGATTAATTTTTAGACAACCAAATGAAATGAACAACATCCGAAGATTATGTTCTGGTTTCAGTTCCAAACTTGTCAGAAATTACAGTCACAATTCTTTTAATGATAATTCTGCTTCCAGTTCCTTCCTAACCCATGGTATCCATGTCTTTCAATGTCCTGATTCAATTGGAATTGTAGCAAAACTATCAGATTGCATTGCCTCAAATGGTGGTAACATTATTGCTGCGGATGTTTTTGTACCTCAAAATAAAGGACTCTTCTACTCTAGAACTGATTTTGTTTTCGATCATGTTAAATGGCCTCGAATGCAAATGGAAGACGATTTCTTAAAAATCTCTAAAACATATAATGCTGTGAGATCTATTCTAAAAGTGCCAGCTCTTGATCCTAAGTATAAGATTGCTGTTCTTGCGTCAAGCCAGGACCATTGTCTAATTGATTCCTTACACGGATGGCAGGATGGAAGACTTCCAGTGGATATCACTTGTGTAATTAGTAACCATGATAGAGGTCCAGAAAGCGAAGTGATTCGTTTTCTTGATAGGCACAATATTCCTTATCATTATTTAAAAACAACAAAAGAGAATAAAAGAGAAGAGGATATCTTAAAGCTGGTTCAAGACACTGATTTTTTAGTACTTGCAAGGTATACGAAGATAATATCTAGCAACTTTTTAAGGAGCTATGGAAAGGATATAATTAACATTCACCATTGCCTGTTGCCATCATTTAGAGGCACCAATCCATTTAAGCAGGTAATCTTCTTGGGGAATGTGAGGCTTCGCCGTAAGGCCTTTGATGCAGGTGTGAAATTAATTGGTGCGACAAGTCATTTTGTGACTGAAGGACGTGATGCTGGACCTATTATTGAACAAATGGTTGAGAGAGTTTCTCATAAAGATGACTTGCAGAGGTTTGTGCAGAAATCGGAAAACATTGAGAAACAATGTCTGTCAATGGCTATCAGATCTTACTGCGAGCTTCGAGTATTACCATATGAAGAAAAGAATACTGTTGTATTTTGA

Protein sequence

>Msa0139740

MWCVNTIAQLKLNRLIFRQPNEMNNIRRLCSGFSSKLVRNYSHNSFNDNSASSSFLTHGIHVFQCPDSIGIVAKLSDCIASNGGNIIAADVFVPQNKGLFYSRTDFVFDHVKWPRMQMEDDFLKISKTYNAVRSILKVPALDPKYKIAVLASSQDHCLIDSLHGWQDGRLPVDITCVISNHDRGPESEVIRFLDRHNIPYHYLKTTKENKREEDILKLVQDTDFLVLARYTKIISSNFLRSYGKDIINIHHCLLPSFRGTNPFKQVIFLGNVRLRRKAFDAGVKLIGATSHFVTEGRDAGPIIEQMVERVSHKDDLQRFVQKSENIEKQCLSMAIRSYCELRVLPYEEKNTVVF*