AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0601710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601710 MtrunA17_Chr4g0026951 94.661 768 32 3 1 759 1 768 0.0 1384
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0601710 AT3G16000.1 43.670 703 369 6 1 682 1 697 5.22e-147 447

Find 120 sgRNAs with CRISPR-Local

Find 398 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGATGGTTTCTCCATTTC+AGG 0.199946 4_2:-44642601 None:intergenic
CAAGAGAACGTTTCTGTTAA+TGG 0.203507 4_2:+44639104 Msa0601710:CDS
TTCTTTGAACAACGATTTAC+AGG 0.220730 4_2:+44644399 Msa0601710:CDS
AGAGAGCAGAGGGAAGAAAT+TGG 0.259658 4_2:+44644699 Msa0601710:CDS
GGAGCTGCTTGGTGGTTCTA+TGG 0.294399 4_2:-44639029 None:intergenic
AGCATTGGATAATTCATCTT+TGG 0.295929 4_2:-44643624 None:intergenic
ATCATATCTTCTGGTCTGTT+GGG 0.298617 4_2:+44642655 Msa0601710:CDS
CTTTGCCTTTCCAAGTAGTT+TGG 0.309873 4_2:-44643270 None:intergenic
GTGCAAAGATCTTGAGCTTC+AGG 0.312959 4_2:+44644108 Msa0601710:CDS
TCTCTTCAGACTTCAACTTT+TGG 0.316670 4_2:-44643811 None:intergenic
TGCACTTACAACGACTTCTT+TGG 0.317800 4_2:-44644962 None:intergenic
TACAACGACTTCTTTGGTTT+CGG 0.328405 4_2:-44644956 None:intergenic
TTGCATTTCTTTGTTCTGTA+AGG 0.330684 4_2:-44644603 None:intergenic
GAAGAAGAAGGGAAGAGAAA+TGG 0.331116 4_2:-44638988 None:intergenic
CTTTCTTTGATTCATTATCT+AGG 0.341810 4_2:-44643982 None:intergenic
AACGTTCTCTTGTTGCATAT+TGG 0.348683 4_2:-44639093 None:intergenic
ATTAATTGAGATCTACAAAA+AGG 0.357996 4_2:+44644330 Msa0601710:CDS
AAGAGTACTGTCACCAGTTT+GGG 0.358487 4_2:+44643332 Msa0601710:CDS
GAAGAAATTGGAAGAGGAAT+TGG 0.359838 4_2:+44644711 Msa0601710:CDS
TAGAAAGGATCACCGAATTT+CGG 0.364977 4_2:-44644513 None:intergenic
GTTATTATTCTCAAGAGTTA+AGG 0.365187 4_2:-44643747 None:intergenic
ATCTGAGCTCGCCGAAGTTA+AGG 0.367535 4_2:+44644144 Msa0601710:CDS
TGGATAATTCATCTTTGGTT+TGG 0.368506 4_2:-44643619 None:intergenic
GTGTCTCTTCTGAATGGAAT+TGG 0.373150 4_2:+44642631 Msa0601710:CDS
AAGAGAACGTTTCTGTTAAT+GGG 0.373484 4_2:+44639105 Msa0601710:CDS
CAAGATTCTCTTGAGTAACT+TGG 0.375297 4_2:-44644027 None:intergenic
TCCTTTGTGTCTCTTCTGAA+TGG 0.376856 4_2:+44642625 Msa0601710:CDS
AAGAAGAAGGGAAGAGAAAT+GGG 0.376997 4_2:-44638987 None:intergenic
TTCATCTTTGGTTTGGTCAT+AGG 0.377065 4_2:-44643612 None:intergenic
AAAGAGTACTGTCACCAGTT+TGG 0.379797 4_2:+44643331 Msa0601710:CDS
GTTCATTTCATCTAGTGATT+TGG 0.384110 4_2:-44644491 None:intergenic
AATCATATCTTCTGGTCTGT+TGG 0.389869 4_2:+44642654 Msa0601710:CDS
CAACGATTTACAGGCTTTGA+AGG 0.401530 4_2:+44644408 Msa0601710:CDS
GAATTCATCCCTTGCAGAAA+AGG 0.404773 4_2:+44643562 Msa0601710:CDS
AAGAAATGACTCTACTGAAC+TGG 0.411333 4_2:+44644057 Msa0601710:CDS
TGGACAGGCAGCACCTGAAA+TGG 0.426569 4_2:+44642588 Msa0601710:intron
ACTGCCGATGCCGCTGTTGA+AGG 0.430461 4_2:+44639159 Msa0601710:CDS
AGATGAAATGAACCGAAATT+CGG 0.435411 4_2:+44644501 Msa0601710:CDS
GGTACTTTGCAGCTCTTCTT+CGG 0.439223 4_2:-44644257 None:intergenic
TCTTTGTTCTGTAAGGTACT+TGG 0.441168 4_2:-44644596 None:intergenic
GTCTGAAGAGAAGGCCACTT+TGG 0.441380 4_2:+44643823 Msa0601710:CDS
GGAATTGGAATCATATCTTC+TGG 0.443046 4_2:+44642646 Msa0601710:CDS
GTCACGAAGAACTGTTGAAA+TGG 0.446236 4_2:+44644453 Msa0601710:CDS
TAGCCTTGAAAATGAGAAAG+AGG 0.448244 4_2:+44644567 Msa0601710:CDS
CGAGAGCAACATACCACAAC+GGG 0.451068 4_2:-44639057 None:intergenic
CAAGAAGAGGAAGAAGAAGA+AGG 0.460952 4_2:-44639000 None:intergenic
AAGAAGTGAATATGATGTAT+TGG 0.464888 4_2:+44643772 Msa0601710:CDS
CCTCTTCTAATTCACTAGAA+AGG 0.465124 4_2:-44644528 None:intergenic
CAACATGTTCTTTGTCCTTG+AGG 0.467033 4_2:-44643529 None:intergenic
CAACCGCAATATTTCACCCT+TGG 0.468447 4_2:-44644740 None:intergenic
GGCAGTGTTGAATTTGAGAA+AGG 0.471651 4_2:-44639142 None:intergenic
TCATATCTTCTGGTCTGTTG+GGG 0.477091 4_2:+44642656 Msa0601710:CDS
CGATCTTACAAAGGCTGATA+CGG 0.477419 4_2:+44643421 Msa0601710:CDS
AGAGACACAAAGGAAGTAGA+TGG 0.480663 4_2:-44642616 None:intergenic
GAAGGCCACTTTGGATGCTA+AGG 0.485310 4_2:+44643832 Msa0601710:CDS
TGAAAACAAATTGAAAGAAA+AGG 0.486501 4_2:+44643457 Msa0601710:CDS
TTTGAAGGAGCAAGTATTGA+AGG 0.492700 4_2:+44644423 Msa0601710:CDS
AATTCCTTCAACAGCGGCAT+CGG 0.493404 4_2:-44639163 None:intergenic
GAGAGAGTTTAGAGAGCAGA+GGG 0.494703 4_2:+44644689 Msa0601710:CDS
AAAAGCCAAGAGGAACTAGA+AGG 0.496547 4_2:+44643683 Msa0601710:CDS
CATAACCTCATTACTAGACT+TGG 0.503381 4_2:+44644658 Msa0601710:CDS
ATCCCTTGCAGAAAAGGAGT+TGG 0.505112 4_2:+44643568 Msa0601710:CDS
GAGCTGCTTGGTGGTTCTAT+GGG 0.506268 4_2:-44639028 None:intergenic
ACTAGAAGGAAAAGATTCCT+TGG 0.509288 4_2:+44643697 Msa0601710:CDS
TTGAATATGAAAATGAGCAT+TGG 0.513802 4_2:-44643639 None:intergenic
GGGAGCACGGAGCTGCTTGG+TGG 0.514022 4_2:-44639037 None:intergenic
AGGAAAAGATTCCTTGGTGA+TGG 0.515184 4_2:+44643703 Msa0601710:CDS
GAGGAACAAACCAAACTACT+TGG 0.517707 4_2:+44643260 Msa0601710:CDS
CTTTGCCAAGTCTAGTAATG+AGG 0.519176 4_2:-44644663 None:intergenic
CAGAGGGAAGAAATTGGAAG+AGG 0.524169 4_2:+44644705 Msa0601710:CDS
AGTTGTTAACAATGAGCAGC+AGG 0.529237 4_2:+44644918 Msa0601710:CDS
AACGGGAGCACGGAGCTGCT+TGG 0.532674 4_2:-44639040 None:intergenic
TGAATATGATGTATTGGAGA+AGG 0.538059 4_2:+44643778 Msa0601710:CDS
TACTGTCACCAGTTTGGGAA+AGG 0.541631 4_2:+44643337 Msa0601710:CDS
GCAGTGTTGAATTTGAGAAA+GGG 0.546459 4_2:-44639141 None:intergenic
AGAGGAATTGGCTTCTGCCA+AGG 0.547273 4_2:+44644723 Msa0601710:CDS
AACTGTTGAAATGGATCTCG+AGG 0.549243 4_2:+44644462 Msa0601710:CDS
AGAGAGAGTTTAGAGAGCAG+AGG 0.552368 4_2:+44644688 Msa0601710:CDS
AAGAGAAATGGGTATAGAAG+CGG 0.554477 4_2:-44638976 None:intergenic
AAAGTTGAAGTCTGAAGAGA+AGG 0.558645 4_2:+44643814 Msa0601710:CDS
CCTTTCTAGTGAATTAGAAG+AGG 0.560312 4_2:+44644528 Msa0601710:CDS
AAGAAGAGGAAGAAGAAGAA+GGG 0.560423 4_2:-44638999 None:intergenic
GCAGCTCCGTGCTCCCGTTG+TGG 0.560542 4_2:+44639044 Msa0601710:CDS
AAGAGCAGGTCGTTTCGTTG+AGG 0.574604 4_2:+44643204 Msa0601710:CDS
AACATACCACAACGGGAGCA+CGG 0.575250 4_2:-44639050 None:intergenic
GAGGAATTGGCTTCTGCCAA+GGG 0.577429 4_2:+44644724 Msa0601710:CDS
AAATGAATCAAGCGAAAACC+AGG 0.577858 4_2:+44643913 Msa0601710:CDS
CTGCCAAGGGTGAAATATTG+CGG 0.583288 4_2:+44644737 Msa0601710:CDS
TAAGGAGCTGATAACAGTAA+AGG 0.584606 4_2:+44644219 Msa0601710:CDS
GTTGAAGTTATCGAACGAGC+AGG 0.586669 4_2:+44643238 Msa0601710:CDS
TCTGCTTAGTGAAGACCTCA+AGG 0.589218 4_2:+44643514 Msa0601710:CDS
TTAAATCAGCGATGACAACC+TGG 0.590178 4_2:-44643931 None:intergenic
ACAAACCAAACTACTTGGAA+AGG 0.594982 4_2:+44643265 Msa0601710:CDS
ACAAAGAAATGCAAGCAAAG+AGG 0.598046 4_2:+44644612 Msa0601710:CDS
CATATCTTCTGGTCTGTTGG+GGG 0.603076 4_2:+44642657 Msa0601710:CDS
TCTATGGGAACGACAAGAAG+AGG 0.603571 4_2:-44639013 None:intergenic
AAGAAGTCGTTGTAAGTGCA+CGG 0.605490 4_2:+44644965 Msa0601710:CDS
ATGGGTATAGAAGCGGAGAG+TGG 0.608813 4_2:-44638969 None:intergenic
GATTTAACCAAAGAACGAGA+AGG 0.619090 4_2:+44643947 Msa0601710:CDS
CTGTAGCGAATCCTTAACTT+CGG 0.622154 4_2:-44644155 None:intergenic
TGAATTTAGTTCCATCACCA+AGG 0.625407 4_2:-44643714 None:intergenic
TCCATTCAGAAGAGACACAA+AGG 0.626993 4_2:-44642626 None:intergenic
CAAACTACTTGGAAAGGCAA+AGG 0.627372 4_2:+44643271 Msa0601710:CDS
AGACGAGCTTCATCAGCTAA+CGG 0.631119 4_2:+44643871 Msa0601710:CDS
ACAGATGAGCAACAAACTGA+AGG 0.633690 4_2:+44643175 Msa0601710:intron
TGTAGTCGTTAGTTCATGAG+AGG 0.649860 4_2:-44644278 None:intergenic
CAAAACCTTAGCATCCAAAG+TGG 0.651075 4_2:-44643837 None:intergenic
GAAGTTATCGAACGAGCAGG+AGG 0.659936 4_2:+44643241 Msa0601710:CDS
TCTCCTTACAGAAGAAAGTG+AGG 0.661466 4_2:+44642445 Msa0601710:intron
AAAGGCTGAAGTCACATCAG+AGG 0.661801 4_2:+44644348 Msa0601710:CDS
TGAAAGAATTCCTTCAACAG+CGG 0.674803 4_2:-44639169 None:intergenic
ACTACACTTGAAACCCGCGA+TGG 0.675763 4_2:+44644295 Msa0601710:CDS
TGATGATGCAAAACTCGAGG+CGG 0.676692 4_2:+44644186 Msa0601710:CDS
ACTTGATGATGCAAAACTCG+AGG 0.683771 4_2:+44644183 Msa0601710:CDS
GGAGCAAGTATTGAAGGACA+AGG 0.687727 4_2:+44644429 Msa0601710:CDS
AAGTGAGGTGAAGATACCAG+AGG 0.692163 4_2:+44642460 Msa0601710:CDS
ACTTGAAGTCGATCTTACAA+AGG 0.692206 4_2:+44643412 Msa0601710:CDS
TGAAATACTGAAAAGCCAAG+AGG 0.694568 4_2:+44643673 Msa0601710:CDS
TGTTGAAATGGATCTCGAGG+AGG 0.699159 4_2:+44644465 Msa0601710:CDS
ACGAGAGCAACATACCACAA+CGG 0.704981 4_2:-44639058 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTTTTATTTCTTATTTA+TGG + chr4_2:44639244-44639263 Msa0601710:intron 10.0%
!! AATAATAATGATGATTTAAT+TGG - chr4_2:44639271-44639290 None:intergenic 10.0%
!!! TCAAATATTTTAATGTTTAA+TGG + chr4_2:44639794-44639813 Msa0601710:intron 10.0%
!!! ATTTGTATTACTTTTTATAA+TGG + chr4_2:44641130-44641149 Msa0601710:intron 10.0%
!!! TTAAAATGGTTAATTTTTAA+AGG + chr4_2:44643103-44643122 Msa0601710:intron 10.0%
!!! AATATTTTAATGTTTAATGG+AGG + chr4_2:44639797-44639816 Msa0601710:intron 15.0%
!!! CTTTAAAATACAGTTTTAAA+AGG - chr4_2:44639891-44639910 None:intergenic 15.0%
!!! TACAAAATAGTATTTTAGTT+AGG + chr4_2:44640253-44640272 Msa0601710:intron 15.0%
!!! TGTGTTTTTAAAATATTTTG+CGG + chr4_2:44640725-44640744 Msa0601710:intron 15.0%
!! AAAAGTAATACAAATTAGTT+TGG - chr4_2:44641125-44641144 None:intergenic 15.0%
!!! TATTAGTTTTTTTGCAAAAT+AGG - chr4_2:44641471-44641490 None:intergenic 15.0%
!!! TTTGATAGTTAATTAACTAA+AGG - chr4_2:44642143-44642162 None:intergenic 15.0%
!!! TCTATCTAGTTTTTTTAAAA+TGG + chr4_2:44643089-44643108 Msa0601710:intron 15.0%
!!! TTATGACATTATCTTGTTTT+TGG + chr4_2:44639292-44639311 Msa0601710:intron 20.0%
!!! ATTAATGTAGTTGATATTGT+TGG - chr4_2:44639705-44639724 None:intergenic 20.0%
!!! TTAATGTTAAGGGTATATTT+GGG + chr4_2:44639994-44640013 Msa0601710:intron 20.0%
!!! CTATTTTGTAACACTTTTAA+AGG - chr4_2:44640243-44640262 None:intergenic 20.0%
!!! TATTACTTTTTATAATGGAC+TGG + chr4_2:44641135-44641154 Msa0601710:intron 20.0%
!! CAAAGAAATATCTGATATTT+GGG - chr4_2:44641255-44641274 None:intergenic 20.0%
!! TCAAAGAAATATCTGATATT+TGG - chr4_2:44641256-44641275 None:intergenic 20.0%
!! CTGAAAAATTAGTTATAAGT+GGG + chr4_2:44641536-44641555 Msa0601710:intron 20.0%
!! AAAAGATTGGAAAAAAAGAT+TGG + chr4_2:44641755-44641774 Msa0601710:intron 20.0%
!! GAAAAAAAGATTGGAAAAAA+AGG + chr4_2:44641751-44641770 Msa0601710:intron 20.0%
!! TCTAGAAATAGAATATTATG+AGG + chr4_2:44642064-44642083 Msa0601710:intron 20.0%
!!! ACTTTCATTTATTTTCTTCA+AGG + chr4_2:44642092-44642111 Msa0601710:intron 20.0%
!! AGTAAAGTTATAGTTTAAAG+AGG + chr4_2:44643005-44643024 Msa0601710:intron 20.0%
!! TGAAAACAAATTGAAAGAAA+AGG + chr4_2:44643457-44643476 Msa0601710:CDS 20.0%
!!! TCTCAATTAATTCTTTTTGT+AGG - chr4_2:44644321-44644340 None:intergenic 20.0%
!! ATTAATTGAGATCTACAAAA+AGG + chr4_2:44644330-44644349 Msa0601710:CDS 20.0%
!!! TACTTTTGATTTTGAAGAAT+TGG - chr4_2:44644839-44644858 None:intergenic 20.0%
!!! AACTTTTGATTTTGAAGAAT+TGG - chr4_2:44644776-44644795 None:intergenic 20.0%
! ATGAAAGAAACAAACATACT+TGG - chr4_2:44639198-44639217 None:intergenic 25.0%
!!! TTATCTTGTTTTTGGTAAAG+TGG + chr4_2:44639300-44639319 Msa0601710:intron 25.0%
!!! TATCTTGTTTTTGGTAAAGT+GGG + chr4_2:44639301-44639320 Msa0601710:intron 25.0%
! ATATATCTCACATTACATAG+GGG - chr4_2:44639747-44639766 None:intergenic 25.0%
! CATATATCTCACATTACATA+GGG - chr4_2:44639748-44639767 None:intergenic 25.0%
! ACATATATCTCACATTACAT+AGG - chr4_2:44639749-44639768 None:intergenic 25.0%
! AACATTAACTATCGAGAAAA+GGG - chr4_2:44639982-44640001 None:intergenic 25.0%
! TAACATTAACTATCGAGAAA+AGG - chr4_2:44639983-44640002 None:intergenic 25.0%
! TTTCTCGATAGTTAATGTTA+AGG + chr4_2:44639983-44640002 Msa0601710:intron 25.0%
! TTCTCGATAGTTAATGTTAA+GGG + chr4_2:44639984-44640003 Msa0601710:intron 25.0%
!! GTTAATGTTAAGGGTATATT+TGG + chr4_2:44639993-44640012 Msa0601710:intron 25.0%
!! TAATGTTAAGGGTATATTTG+GGG + chr4_2:44639995-44640014 Msa0601710:intron 25.0%
! AAGACTAAAATTTCTATACG+CGG - chr4_2:44640292-44640311 None:intergenic 25.0%
! TTTAAAAATTAGCATCTGTG+TGG + chr4_2:44640702-44640721 Msa0601710:intron 25.0%
! ACTCTTTACTAGTTGTTAAT+TGG + chr4_2:44641002-44641021 Msa0601710:intron 25.0%
! AAATATCTGATATTTGGGTA+AGG - chr4_2:44641250-44641269 None:intergenic 25.0%
!! CCACTTATAACTAATTTTTC+AGG - chr4_2:44641538-44641557 None:intergenic 25.0%
! CCTGAAAAATTAGTTATAAG+TGG + chr4_2:44641535-44641554 Msa0601710:intron 25.0%
! TTGATACCACCTTAAAATTT+GGG - chr4_2:44641612-44641631 None:intergenic 25.0%
! TTTGATACCACCTTAAAATT+TGG - chr4_2:44641613-44641632 None:intergenic 25.0%
! AAAAAGATTGGAAAAAAAGG+TGG + chr4_2:44641767-44641786 Msa0601710:intron 25.0%
! TTAACTACCATACTATATGT+TGG + chr4_2:44641880-44641899 Msa0601710:intron 25.0%
! AGAATGAAATGAGAAGAATA+TGG + chr4_2:44641919-44641938 Msa0601710:intron 25.0%
! TAATTTCAATGAGAGAAAGT+GGG - chr4_2:44641955-44641974 None:intergenic 25.0%
! ATAATTTCAATGAGAGAAAG+TGG - chr4_2:44641956-44641975 None:intergenic 25.0%
! ATTGAAATTATTCAGCGAAA+AGG + chr4_2:44641965-44641984 Msa0601710:intron 25.0%
!!! TATTTCTAGATACGAATAGA+AGG - chr4_2:44642054-44642073 None:intergenic 25.0%
!! ATCTCCTTTTGACATATTAA+TGG - chr4_2:44642241-44642260 None:intergenic 25.0%
! TGATTCAAGAAAGGATAATT+TGG - chr4_2:44642266-44642285 None:intergenic 25.0%
! AATGCATGCATATACATATA+CGG - chr4_2:44642292-44642311 None:intergenic 25.0%
! TAGTTCACATCACAAAATTA+AGG - chr4_2:44642349-44642368 None:intergenic 25.0%
! TTCTAAACTTATTGCTTCTA+TGG + chr4_2:44642568-44642587 Msa0601710:intron 25.0%
!! CTTTTCAATTTCTCAAATCT+TGG + chr4_2:44642924-44642943 Msa0601710:intron 25.0%
!! ATGTGTTAGTCATATTTTAC+TGG + chr4_2:44643143-44643162 Msa0601710:intron 25.0%
! TTGAATATGAAAATGAGCAT+TGG - chr4_2:44643642-44643661 None:intergenic 25.0%
!! AATGCTCATTTTCATATTCA+AGG + chr4_2:44643641-44643660 Msa0601710:CDS 25.0%
!! ATGCTCATTTTCATATTCAA+GGG + chr4_2:44643642-44643661 Msa0601710:CDS 25.0%
! GTTATTATTCTCAAGAGTTA+AGG - chr4_2:44643750-44643769 None:intergenic 25.0%
! AAGAAGTGAATATGATGTAT+TGG + chr4_2:44643772-44643791 Msa0601710:CDS 25.0%
! CTTTCTTTGATTCATTATCT+AGG - chr4_2:44643985-44644004 None:intergenic 25.0%
AAGAGAACGTTTCTGTTAAT+GGG + chr4_2:44639105-44639124 Msa0601710:CDS 30.0%
!!! ATCTTGTTTTTGGTAAAGTG+GGG + chr4_2:44639302-44639321 Msa0601710:intron 30.0%
!! ATGAATGTTTTGTTCGATGA+CGG + chr4_2:44639334-44639353 Msa0601710:intron 30.0%
CATATCAAATGTTCGTTGTA+AGG + chr4_2:44639496-44639515 Msa0601710:intron 30.0%
! GGAAATATGAGGTGTATTTT+TGG + chr4_2:44639517-44639536 Msa0601710:intron 30.0%
TTGATATTGTTGGAACTTAG+GGG - chr4_2:44639695-44639714 None:intergenic 30.0%
GTTGATATTGTTGGAACTTA+GGG - chr4_2:44639696-44639715 None:intergenic 30.0%
! AGTTGATATTGTTGGAACTT+AGG - chr4_2:44639697-44639716 None:intergenic 30.0%
ACATTAACTATCGAGAAAAG+GGG - chr4_2:44639981-44640000 None:intergenic 30.0%
TTAAATAAGCTCCTTGATCT+CGG + chr4_2:44640038-44640057 Msa0601710:intron 30.0%
TATAAAAATCACCGAGATCA+AGG - chr4_2:44640052-44640071 None:intergenic 30.0%
ACACTTCAAAAACTCTTTCT+TGG + chr4_2:44640175-44640194 Msa0601710:intron 30.0%
AGACTAAAATTTCTATACGC+GGG - chr4_2:44640291-44640310 None:intergenic 30.0%
AGAATCGAAATTGGGAAATT+GGG - chr4_2:44640336-44640355 None:intergenic 30.0%
TCCTTTATATTGGACATTAG+TGG + chr4_2:44640843-44640862 Msa0601710:intron 30.0%
ACCACTAATGTCCAATATAA+AGG - chr4_2:44640847-44640866 None:intergenic 30.0%
!! GACTTAGTTTGCATTAAACT+AGG - chr4_2:44640912-44640931 None:intergenic 30.0%
!! CAAGGGATTTATTTTCACAA+AGG - chr4_2:44641034-44641053 None:intergenic 30.0%
CTTTGTGAAAATAAATCCCT+TGG + chr4_2:44641032-44641051 Msa0601710:intron 30.0%
AATCCAAGAACAATGTTCAA+TGG + chr4_2:44641397-44641416 Msa0601710:intron 30.0%
CTAACTCAACCATACAAATT+TGG - chr4_2:44641583-44641602 None:intergenic 30.0%
CAAATTTGTATGGTTGAGTT+AGG + chr4_2:44641581-44641600 Msa0601710:intron 30.0%
! TTTTCCAATCTTTTTTTCCC+AGG - chr4_2:44641749-44641768 None:intergenic 30.0%
! AATCCGGTTTTTGTAAGATT+GGG + chr4_2:44641809-44641828 Msa0601710:intron 30.0%
TTTCCCTACCAATTCAAAAT+GGG + chr4_2:44641999-44642018 Msa0601710:intron 30.0%
! AAACCCATTTTGAATTGGTA+GGG - chr4_2:44642005-44642024 None:intergenic 30.0%
! TAAACCCATTTTGAATTGGT+AGG - chr4_2:44642006-44642025 None:intergenic 30.0%
! GGTTTAAACCCATTTTGAAT+TGG - chr4_2:44642010-44642029 None:intergenic 30.0%
AAGAAAAGAAGAATACTCAG+AGG - chr4_2:44642031-44642050 None:intergenic 30.0%
TCTTCAAGGATGTAAATAAC+TGG + chr4_2:44642106-44642125 Msa0601710:intron 30.0%
CAATAACAAAGTAGCAAATC+AGG - chr4_2:44642183-44642202 None:intergenic 30.0%
AGCTCCATTAATATGTCAAA+AGG + chr4_2:44642234-44642253 Msa0601710:intron 30.0%
TGTATATGCATGCATTGTTT+CGG + chr4_2:44642296-44642315 Msa0601710:intron 30.0%
ATCCAAAGGACAAAAACAAT+AGG - chr4_2:44642539-44642558 None:intergenic 30.0%
TAGAATACGTAAACATCCAA+AGG - chr4_2:44642553-44642572 None:intergenic 30.0%
TTGCAACAATAGAAACAGTA+AGG + chr4_2:44642719-44642738 Msa0601710:intron 30.0%
AATTTCTCAAATCTTGGTCT+CGG + chr4_2:44642930-44642949 Msa0601710:intron 30.0%
TATAGTTTAAAGAGGAAGTG+AGG + chr4_2:44643013-44643032 Msa0601710:intron 30.0%
ATAGTTTAAAGAGGAAGTGA+GGG + chr4_2:44643014-44643033 Msa0601710:intron 30.0%
! TCCTCTAGAAACATCAAAAA+GGG - chr4_2:44643049-44643068 None:intergenic 30.0%
! TTCCTCTAGAAACATCAAAA+AGG - chr4_2:44643050-44643069 None:intergenic 30.0%
TGGATAATTCATCTTTGGTT+TGG - chr4_2:44643622-44643641 None:intergenic 30.0%
! AGCATTGGATAATTCATCTT+TGG - chr4_2:44643627-44643646 None:intergenic 30.0%
TGAATATGATGTATTGGAGA+AGG + chr4_2:44643778-44643797 Msa0601710:CDS 30.0%
! TTTTAAACCTTCTCGTTCTT+TGG - chr4_2:44643957-44643976 None:intergenic 30.0%
TTCTTTGAACAACGATTTAC+AGG + chr4_2:44644399-44644418 Msa0601710:CDS 30.0%
GTTCATTTCATCTAGTGATT+TGG - chr4_2:44644494-44644513 None:intergenic 30.0%
AGATGAAATGAACCGAAATT+CGG + chr4_2:44644501-44644520 Msa0601710:CDS 30.0%
TTGCATTTCTTTGTTCTGTA+AGG - chr4_2:44644606-44644625 None:intergenic 30.0%
! AGCATCTTCAATGTTTTCTT+GGG - chr4_2:44644638-44644657 None:intergenic 30.0%
AAGAGAAATGGGTATAGAAG+CGG - chr4_2:44638979-44638998 None:intergenic 35.0%
AAGAAGAAGGGAAGAGAAAT+GGG - chr4_2:44638990-44639009 None:intergenic 35.0%
AAGAAGAGGAAGAAGAAGAA+GGG - chr4_2:44639002-44639021 None:intergenic 35.0%
AACGTTCTCTTGTTGCATAT+TGG - chr4_2:44639096-44639115 None:intergenic 35.0%
CAAGAGAACGTTTCTGTTAA+TGG + chr4_2:44639104-44639123 Msa0601710:CDS 35.0%
! GCAGTGTTGAATTTGAGAAA+GGG - chr4_2:44639144-44639163 None:intergenic 35.0%
TGAAAGAATTCCTTCAACAG+CGG - chr4_2:44639172-44639191 None:intergenic 35.0%
!!! TCTTGTTTTTGGTAAAGTGG+GGG + chr4_2:44639303-44639322 Msa0601710:intron 35.0%
CTAACCAAGTGTCATAAAAC+CGG + chr4_2:44639378-44639397 Msa0601710:intron 35.0%
GTTCGTTGTAAGGAAATATG+AGG + chr4_2:44639506-44639525 Msa0601710:intron 35.0%
! TTTTGGTCGCATTATAAGTG+TGG + chr4_2:44639534-44639553 Msa0601710:intron 35.0%
TTTGGTCGCATTATAAGTGT+GGG + chr4_2:44639535-44639554 Msa0601710:intron 35.0%
AACATTCGGATCATCACATT+GGG - chr4_2:44639664-44639683 None:intergenic 35.0%
AAACATTCGGATCATCACAT+TGG - chr4_2:44639665-44639684 None:intergenic 35.0%
! GTGATGATCCGAATGTTTTA+AGG + chr4_2:44639667-44639686 Msa0601710:intron 35.0%
ACTCCTCTGATACTTTACTT+AGG + chr4_2:44640205-44640224 Msa0601710:intron 35.0%
! ATGCCTAAGTAAAGTATCAG+AGG - chr4_2:44640211-44640230 None:intergenic 35.0%
GAGAATCGAAATTGGGAAAT+TGG - chr4_2:44640337-44640356 None:intergenic 35.0%
GGAAATGGAGAATCGAAATT+GGG - chr4_2:44640344-44640363 None:intergenic 35.0%
CAATTTCGATTCTCCATTTC+CGG + chr4_2:44640343-44640362 Msa0601710:intron 35.0%
GAAGATGAAGACTGAAAAAG+AGG - chr4_2:44640381-44640400 None:intergenic 35.0%
AATTCAGGTACCTCTTTGAT+TGG + chr4_2:44640581-44640600 Msa0601710:intron 35.0%
! TACCTCTTTGATTGGTTACA+TGG + chr4_2:44640589-44640608 Msa0601710:intron 35.0%
GCAGACTAAGTTTCAAACTA+AGG - chr4_2:44640640-44640659 None:intergenic 35.0%
TGTGTCAGTGTCCTTTATAT+TGG + chr4_2:44640833-44640852 Msa0601710:intron 35.0%
TTGCATTAAACTAGGAAGCA+CGG - chr4_2:44640904-44640923 None:intergenic 35.0%
TTCCACTAGGAAAATCCATT+GGG - chr4_2:44640942-44640961 None:intergenic 35.0%
AGAGTAAGATTTCTCTCCAA+GGG - chr4_2:44641051-44641070 None:intergenic 35.0%
AAGAGTAAGATTTCTCTCCA+AGG - chr4_2:44641052-44641071 None:intergenic 35.0%
CTATTTCATCTGTCCATTTG+AGG - chr4_2:44641088-44641107 None:intergenic 35.0%
TGTCCATTGAACATTGTTCT+TGG - chr4_2:44641403-44641422 None:intergenic 35.0%
ACAATGTTCAATGGACAGTT+TGG + chr4_2:44641406-44641425 Msa0601710:intron 35.0%
CAATGTTCAATGGACAGTTT+GGG + chr4_2:44641407-44641426 Msa0601710:intron 35.0%
! ATTTTCTCAGAGTCTCACAT+TGG + chr4_2:44641501-44641520 Msa0601710:intron 35.0%
! AAATTTGGCTTACAAGGTGA+GGG - chr4_2:44641568-44641587 None:intergenic 35.0%
! CCATACAAATTTGGCTTACA+AGG - chr4_2:44641574-44641593 None:intergenic 35.0%
CCTTGTAAGCCAAATTTGTA+TGG + chr4_2:44641571-44641590 Msa0601710:intron 35.0%
! TAGGCACAACCCAAATTTTA+AGG + chr4_2:44641600-44641619 Msa0601710:intron 35.0%
AAAGTTTATCCAAGATCCGT+CGG + chr4_2:44641630-44641649 Msa0601710:intron 35.0%
ACACTCCAAATATTCAATCC+TGG + chr4_2:44641680-44641699 Msa0601710:intron 35.0%
CACTCCAAATATTCAATCCT+GGG + chr4_2:44641681-44641700 Msa0601710:intron 35.0%
ACTCCAAATATTCAATCCTG+GGG + chr4_2:44641682-44641701 Msa0601710:intron 35.0%
GTGTGTTAAGAGTCTCAAAT+TGG + chr4_2:44641712-44641731 Msa0601710:intron 35.0%
AAATTGGATGAGATATGACC+TGG + chr4_2:44641728-44641747 Msa0601710:intron 35.0%
AATTGGATGAGATATGACCT+GGG + chr4_2:44641729-44641748 Msa0601710:intron 35.0%
ATGACCTGGGAAAAAAAGAT+TGG + chr4_2:44641742-44641761 Msa0601710:intron 35.0%
AGATTGGAAAAAAAGGTGGT+AGG + chr4_2:44641771-44641790 Msa0601710:intron 35.0%
! CAATCCGGTTTTTGTAAGAT+TGG + chr4_2:44641808-44641827 Msa0601710:intron 35.0%
GAACCCAATCTTACAAAAAC+CGG - chr4_2:44641815-44641834 None:intergenic 35.0%
! GGTTTTTGTAAGATTGGGTT+CGG + chr4_2:44641814-44641833 Msa0601710:intron 35.0%
! AAACGTTCCATGTGATGTTT+TGG + chr4_2:44641850-44641869 Msa0601710:intron 35.0%
ACTACCATACTATATGTTGG+TGG + chr4_2:44641883-44641902 Msa0601710:intron 35.0%
TCAACCACCAACATATAGTA+TGG - chr4_2:44641890-44641909 None:intergenic 35.0%
GTTTCCCTACCAATTCAAAA+TGG + chr4_2:44641998-44642017 Msa0601710:intron 35.0%
ACAAAGTAGCAAATCAGGAA+GGG - chr4_2:44642178-44642197 None:intergenic 35.0%
AACAAAGTAGCAAATCAGGA+AGG - chr4_2:44642179-44642198 None:intergenic 35.0%
ATACGGTCATGATTCAAGAA+AGG - chr4_2:44642275-44642294 None:intergenic 35.0%
ACATCACAAAATTAAGGACG+TGG - chr4_2:44642343-44642362 None:intergenic 35.0%
! CTGTTTAGTGAAGTATCACT+TGG + chr4_2:44642389-44642408 Msa0601710:intron 35.0%
ACTTTCTTCTGTAAGGAGAA+TGG - chr4_2:44642444-44642463 None:intergenic 35.0%
ATACCAGAGGATAAAAAGCT+AGG + chr4_2:44642473-44642492 Msa0601710:CDS 35.0%
!!! TGCCTATTGTTTTTGTCCTT+TGG + chr4_2:44642534-44642553 Msa0601710:intron 35.0%
AACTTATTGCTTCTATGGAC+AGG + chr4_2:44642573-44642592 Msa0601710:intron 35.0%
GGAATTGGAATCATATCTTC+TGG + chr4_2:44642646-44642665 Msa0601710:CDS 35.0%
AATCATATCTTCTGGTCTGT+TGG + chr4_2:44642654-44642673 Msa0601710:CDS 35.0%
ATCATATCTTCTGGTCTGTT+GGG + chr4_2:44642655-44642674 Msa0601710:CDS 35.0%
GAAAACCAGTAAGACATGTA+TGG + chr4_2:44642768-44642787 Msa0601710:intron 35.0%
GCACAAACATTTCAGATTGA+CGG + chr4_2:44642824-44642843 Msa0601710:intron 35.0%
!!! TCCCTTTTTGATGTTTCTAG+AGG + chr4_2:44643045-44643064 Msa0601710:intron 35.0%
ACAAACCAAACTACTTGGAA+AGG + chr4_2:44643265-44643284 Msa0601710:CDS 35.0%
GCTAAAAAGCGAGAAAAGTT+TGG + chr4_2:44643361-44643380 Msa0601710:CDS 35.0%
ACTTGAAGTCGATCTTACAA+AGG + chr4_2:44643412-44643431 Msa0601710:CDS 35.0%
!! TTCATCTTTGGTTTGGTCAT+AGG - chr4_2:44643615-44643634 None:intergenic 35.0%
TGAAATACTGAAAAGCCAAG+AGG + chr4_2:44643673-44643692 Msa0601710:CDS 35.0%
ACTAGAAGGAAAAGATTCCT+TGG + chr4_2:44643697-44643716 Msa0601710:CDS 35.0%
! TGAATTTAGTTCCATCACCA+AGG - chr4_2:44643717-44643736 None:intergenic 35.0%
! TCTCTTCAGACTTCAACTTT+TGG - chr4_2:44643814-44643833 None:intergenic 35.0%
AAAGTTGAAGTCTGAAGAGA+AGG + chr4_2:44643814-44643833 Msa0601710:CDS 35.0%
GATTTAACCAAAGAACGAGA+AGG + chr4_2:44643947-44643966 Msa0601710:CDS 35.0%
CAAGATTCTCTTGAGTAACT+TGG - chr4_2:44644030-44644049 None:intergenic 35.0%
AAGAAATGACTCTACTGAAC+TGG + chr4_2:44644057-44644076 Msa0601710:CDS 35.0%
TAAGGAGCTGATAACAGTAA+AGG + chr4_2:44644219-44644238 Msa0601710:CDS 35.0%
!! TTTGAAGGAGCAAGTATTGA+AGG + chr4_2:44644423-44644442 Msa0601710:CDS 35.0%
TAGAAAGGATCACCGAATTT+CGG - chr4_2:44644516-44644535 None:intergenic 35.0%
CCTCTTCTAATTCACTAGAA+AGG - chr4_2:44644531-44644550 None:intergenic 35.0%
! CCTTTCTAGTGAATTAGAAG+AGG + chr4_2:44644528-44644547 Msa0601710:CDS 35.0%
! TAGCCTTGAAAATGAGAAAG+AGG + chr4_2:44644567-44644586 Msa0601710:CDS 35.0%
! GAACCTCTTTCTCATTTTCA+AGG - chr4_2:44644573-44644592 None:intergenic 35.0%
! TCTTTGTTCTGTAAGGTACT+TGG - chr4_2:44644599-44644618 None:intergenic 35.0%
ACAAAGAAATGCAAGCAAAG+AGG + chr4_2:44644612-44644631 Msa0601710:CDS 35.0%
! GAGCATCTTCAATGTTTTCT+TGG - chr4_2:44644639-44644658 None:intergenic 35.0%
CATAACCTCATTACTAGACT+TGG + chr4_2:44644658-44644677 Msa0601710:CDS 35.0%
GAAGAAATTGGAAGAGGAAT+TGG + chr4_2:44644711-44644730 Msa0601710:CDS 35.0%
! TACAACGACTTCTTTGGTTT+CGG - chr4_2:44644959-44644978 None:intergenic 35.0%
GAAGAAGAAGGGAAGAGAAA+TGG - chr4_2:44638991-44639010 None:intergenic 40.0%
CAAGAAGAGGAAGAAGAAGA+AGG - chr4_2:44639003-44639022 None:intergenic 40.0%
! GGCAGTGTTGAATTTGAGAA+AGG - chr4_2:44639145-44639164 None:intergenic 40.0%
! GATGACGGTCTTAGAATTTG+TGG + chr4_2:44639349-44639368 Msa0601710:intron 40.0%
ACGGTCTTAGAATTTGTGGT+TGG + chr4_2:44639353-44639372 Msa0601710:intron 40.0%
CGGTCTTAGAATTTGTGGTT+GGG + chr4_2:44639354-44639373 Msa0601710:intron 40.0%
!! CGGTTTTATGACACTTGGTT+AGG - chr4_2:44639380-44639399 None:intergenic 40.0%
!! CAAACCGGTTTTATGACACT+TGG - chr4_2:44639385-44639404 None:intergenic 40.0%
!! TAAAACCGGTTTGTGATGTG+AGG + chr4_2:44639392-44639411 Msa0601710:intron 40.0%
GAGTGACTCGTATACTTATG+TGG + chr4_2:44639608-44639627 Msa0601710:intron 40.0%
TAGGGGAGCCTTAAAACATT+CGG - chr4_2:44639678-44639697 None:intergenic 40.0%
! TGTTTAATGGAGGTGCATTG+TGG + chr4_2:44639807-44639826 Msa0601710:intron 40.0%
! GTTTAATGGAGGTGCATTGT+GGG + chr4_2:44639808-44639827 Msa0601710:intron 40.0%
GTTGAATTGTCATTACGCGA+CGG - chr4_2:44639851-44639870 None:intergenic 40.0%
CTATGAGTGTCATGCTTCTT+AGG - chr4_2:44640083-44640102 None:intergenic 40.0%
! CTAAGAAGCATGACACTCAT+AGG + chr4_2:44640081-44640100 Msa0601710:intron 40.0%
CGGAAATGGAGAATCGAAAT+TGG - chr4_2:44640345-44640364 None:intergenic 40.0%
AAAGAGGCGAATTATGAGAC+CGG - chr4_2:44640365-44640384 None:intergenic 40.0%
ACATCAGCATCCACAAATTC+AGG + chr4_2:44640566-44640585 Msa0601710:intron 40.0%
!! CAAAGAGGTACCTGAATTTG+TGG - chr4_2:44640579-44640598 None:intergenic 40.0%
CACCATGTAACCAATCAAAG+AGG - chr4_2:44640594-44640613 None:intergenic 40.0%
ACTAAGTCATGTGTACCCAA+TGG + chr4_2:44640924-44640943 Msa0601710:intron 40.0%
!! TACCCAATGGATTTTCCTAG+TGG + chr4_2:44640937-44640956 Msa0601710:intron 40.0%
CTTCCACTAGGAAAATCCAT+TGG - chr4_2:44640943-44640962 None:intergenic 40.0%
! GTTGCTTTATCAGCCTCAAA+TGG + chr4_2:44641072-44641091 Msa0601710:intron 40.0%
TGAGTGAAACTCCATCACTA+TGG + chr4_2:44641164-44641183 Msa0601710:intron 40.0%
! CAAATTTGGCTTACAAGGTG+AGG - chr4_2:44641569-44641588 None:intergenic 40.0%
!! GCACAACCCAAATTTTAAGG+TGG + chr4_2:44641603-44641622 Msa0601710:intron 40.0%
AAGTTTATCCAAGATCCGTC+GGG + chr4_2:44641631-44641650 Msa0601710:intron 40.0%
CTCCAAATATTCAATCCTGG+GGG + chr4_2:44641683-44641702 Msa0601710:intron 40.0%
AAATATTCAATCCTGGGGGT+GGG + chr4_2:44641687-44641706 Msa0601710:intron 40.0%
GCTTCTCTCATCTTACAATC+CGG + chr4_2:44641793-44641812 Msa0601710:intron 40.0%
GGACACAACTAACAAAGCAA+GGG - chr4_2:44642322-44642341 None:intergenic 40.0%
TGGACACAACTAACAAAGCA+AGG - chr4_2:44642323-44642342 None:intergenic 40.0%
TCTCCTTACAGAAGAAAGTG+AGG + chr4_2:44642445-44642464 Msa0601710:intron 40.0%
TCACCTCACTTTCTTCTGTA+AGG - chr4_2:44642451-44642470 None:intergenic 40.0%
GTAGATGGTTTCTCCATTTC+AGG - chr4_2:44642604-44642623 None:intergenic 40.0%
AGAGACACAAAGGAAGTAGA+TGG - chr4_2:44642619-44642638 None:intergenic 40.0%
TCCTTTGTGTCTCTTCTGAA+TGG + chr4_2:44642625-44642644 Msa0601710:CDS 40.0%
TCCATTCAGAAGAGACACAA+AGG - chr4_2:44642629-44642648 None:intergenic 40.0%
GTGTCTCTTCTGAATGGAAT+TGG + chr4_2:44642631-44642650 Msa0601710:CDS 40.0%
TCATATCTTCTGGTCTGTTG+GGG + chr4_2:44642656-44642675 Msa0601710:CDS 40.0%
AAAGGCCATACATGTCTTAC+TGG - chr4_2:44642776-44642795 None:intergenic 40.0%
TAAGACATGTATGGCCTTTG+AGG + chr4_2:44642777-44642796 Msa0601710:intron 40.0%
AGAAGAGAGACATTCCTCAA+AGG - chr4_2:44642794-44642813 None:intergenic 40.0%
TGTCAGTGTCATACAAGTCT+CGG - chr4_2:44642880-44642899 None:intergenic 40.0%
ACAGATGAGCAACAAACTGA+AGG + chr4_2:44643175-44643194 Msa0601710:intron 40.0%
ACTGAAGGAAAAAGAAGAGC+AGG + chr4_2:44643190-44643209 Msa0601710:CDS 40.0%
GAGGAACAAACCAAACTACT+TGG + chr4_2:44643260-44643279 Msa0601710:CDS 40.0%
CTTTGCCTTTCCAAGTAGTT+TGG - chr4_2:44643273-44643292 None:intergenic 40.0%
CAAACTACTTGGAAAGGCAA+AGG + chr4_2:44643271-44643290 Msa0601710:CDS 40.0%
!! AAAGAGTACTGTCACCAGTT+TGG + chr4_2:44643331-44643350 Msa0601710:CDS 40.0%
!! AAGAGTACTGTCACCAGTTT+GGG + chr4_2:44643332-44643351 Msa0601710:CDS 40.0%
!!! TTTTAGCTCCTTTCCCAAAC+TGG - chr4_2:44643348-44643367 None:intergenic 40.0%
CGATCTTACAAAGGCTGATA+CGG + chr4_2:44643421-44643440 Msa0601710:CDS 40.0%
CAACATGTTCTTTGTCCTTG+AGG - chr4_2:44643532-44643551 None:intergenic 40.0%
GAATTCATCCCTTGCAGAAA+AGG + chr4_2:44643562-44643581 Msa0601710:CDS 40.0%
! TTCCAACTCCTTTTCTGCAA+GGG - chr4_2:44643573-44643592 None:intergenic 40.0%
! ATTCCAACTCCTTTTCTGCA+AGG - chr4_2:44643574-44643593 None:intergenic 40.0%
AAAAGCCAAGAGGAACTAGA+AGG + chr4_2:44643683-44643702 Msa0601710:CDS 40.0%
!!! CTTTTCCTTCTAGTTCCTCT+TGG - chr4_2:44643691-44643710 None:intergenic 40.0%
AGGAAAAGATTCCTTGGTGA+TGG + chr4_2:44643703-44643722 Msa0601710:CDS 40.0%
CAAAACCTTAGCATCCAAAG+TGG - chr4_2:44643840-44643859 None:intergenic 40.0%
TTAAATCAGCGATGACAACC+TGG - chr4_2:44643934-44643953 None:intergenic 40.0%
CTGTAGCGAATCCTTAACTT+CGG - chr4_2:44644158-44644177 None:intergenic 40.0%
!! ACTTGATGATGCAAAACTCG+AGG + chr4_2:44644183-44644202 Msa0601710:CDS 40.0%
TGTAGTCGTTAGTTCATGAG+AGG - chr4_2:44644281-44644300 None:intergenic 40.0%
! ATTCTTTTTGTAGGCCATCG+CGG - chr4_2:44644312-44644331 None:intergenic 40.0%
!! AGTCACATCAGAGGTTTTGA+AGG + chr4_2:44644357-44644376 Msa0601710:CDS 40.0%
! CAACGATTTACAGGCTTTGA+AGG + chr4_2:44644408-44644427 Msa0601710:CDS 40.0%
GTCACGAAGAACTGTTGAAA+TGG + chr4_2:44644453-44644472 Msa0601710:CDS 40.0%
AACTGTTGAAATGGATCTCG+AGG + chr4_2:44644462-44644481 Msa0601710:CDS 40.0%
CTTTGCCAAGTCTAGTAATG+AGG - chr4_2:44644666-44644685 None:intergenic 40.0%
AGTTGTTAACAATGAGCAGC+AGG + chr4_2:44644918-44644937 Msa0601710:CDS 40.0%
TGCACTTACAACGACTTCTT+TGG - chr4_2:44644965-44644984 None:intergenic 40.0%
AAGAAGTCGTTGTAAGTGCA+CGG + chr4_2:44644965-44644984 Msa0601710:CDS 40.0%
TCTATGGGAACGACAAGAAG+AGG - chr4_2:44639016-44639035 None:intergenic 45.0%
ACGAGAGCAACATACCACAA+CGG - chr4_2:44639061-44639080 None:intergenic 45.0%
AATTCCTTCAACAGCGGCAT+CGG - chr4_2:44639166-44639185 None:intergenic 45.0%
TGCCCCCACTTATTAACAGA+GGG + chr4_2:44639417-44639436 Msa0601710:intron 45.0%
ACCCCCTCTGTTAATAAGTG+GGG - chr4_2:44639423-44639442 None:intergenic 45.0%
CACCCCCTCTGTTAATAAGT+GGG - chr4_2:44639424-44639443 None:intergenic 45.0%
ACACCCCCTCTGTTAATAAG+TGG - chr4_2:44639425-44639444 None:intergenic 45.0%
! GGGGTGTCTATCTCGTTATA+GGG + chr4_2:44639438-44639457 Msa0601710:intron 45.0%
AAGCAACCACACATGTGAGT+TGG - chr4_2:44639637-44639656 None:intergenic 45.0%
AGCATGACACTCATAGGTTC+AGG + chr4_2:44640087-44640106 Msa0601710:intron 45.0%
GCATGACACTCATAGGTTCA+GGG + chr4_2:44640088-44640107 Msa0601710:intron 45.0%
CATGACACTCATAGGTTCAG+GGG + chr4_2:44640089-44640108 Msa0601710:intron 45.0%
GCGAATTATGAGACCGGAAA+TGG - chr4_2:44640359-44640378 None:intergenic 45.0%
GAAACGTTGTCTACGAACAC+GGG - chr4_2:44640411-44640430 None:intergenic 45.0%
GGAAACGTTGTCTACGAACA+CGG - chr4_2:44640412-44640431 None:intergenic 45.0%
GAGATATCGGGACTAAAGAG+AGG - chr4_2:44640515-44640534 None:intergenic 45.0%
AACGTCTGAGAGGGAGATAT+CGG - chr4_2:44640528-44640547 None:intergenic 45.0%
GTGCACAATCTCTTCACTTG+CGG - chr4_2:44640976-44640995 None:intergenic 45.0%
CAAGTGAAGAGATTGTGCAC+AGG + chr4_2:44640976-44640995 Msa0601710:intron 45.0%
AACTCCATCACTATGGTGCT+CGG + chr4_2:44641171-44641190 Msa0601710:intron 45.0%
AATGGACAGTTTGGGCAGAA+AGG + chr4_2:44641415-44641434 Msa0601710:intron 45.0%
CACCCCCAGGATTGAATATT+TGG - chr4_2:44641688-44641707 None:intergenic 45.0%
CAAATATTCAATCCTGGGGG+TGG + chr4_2:44641686-44641705 Msa0601710:intron 45.0%
AATATTCAATCCTGGGGGTG+GGG + chr4_2:44641688-44641707 Msa0601710:intron 45.0%
GCTGTGTCCAAAACATCACA+TGG - chr4_2:44641860-44641879 None:intergenic 45.0%
AAGTGAGGTGAAGATACCAG+AGG + chr4_2:44642460-44642479 Msa0601710:CDS 45.0%
!! TCGCCTAGCTTTTTATCCTC+TGG - chr4_2:44642479-44642498 None:intergenic 45.0%
AGAGGATAAAAAGCTAGGCG+AGG + chr4_2:44642478-44642497 Msa0601710:CDS 45.0%
CATATCTTCTGGTCTGTTGG+GGG + chr4_2:44642657-44642676 Msa0601710:CDS 45.0%
GTCAGTGTCATACAAGTCTC+GGG - chr4_2:44642879-44642898 None:intergenic 45.0%
! TCAAATCTTGGTCTCGGTGT+TGG + chr4_2:44642936-44642955 Msa0601710:intron 45.0%
GTTGAAGTTATCGAACGAGC+AGG + chr4_2:44643238-44643257 Msa0601710:CDS 45.0%
TACTGTCACCAGTTTGGGAA+AGG + chr4_2:44643337-44643356 Msa0601710:CDS 45.0%
TCTGCTTAGTGAAGACCTCA+AGG + chr4_2:44643514-44643533 Msa0601710:CDS 45.0%
ATCCCTTGCAGAAAAGGAGT+TGG + chr4_2:44643568-44643587 Msa0601710:CDS 45.0%
AGACGAGCTTCATCAGCTAA+CGG + chr4_2:44643871-44643890 Msa0601710:CDS 45.0%
GTGCAAAGATCTTGAGCTTC+AGG + chr4_2:44644108-44644127 Msa0601710:CDS 45.0%
! TGATGATGCAAAACTCGAGG+CGG + chr4_2:44644186-44644205 Msa0601710:CDS 45.0%
CGAGGCGGAAAAATTGACTA+AGG + chr4_2:44644201-44644220 Msa0601710:CDS 45.0%
GGTACTTTGCAGCTCTTCTT+CGG - chr4_2:44644260-44644279 None:intergenic 45.0%
! TTCTTTTTGTAGGCCATCGC+GGG - chr4_2:44644311-44644330 None:intergenic 45.0%
AAAGGCTGAAGTCACATCAG+AGG + chr4_2:44644348-44644367 Msa0601710:CDS 45.0%
!! GGAGCAAGTATTGAAGGACA+AGG + chr4_2:44644429-44644448 Msa0601710:CDS 45.0%
TGTTGAAATGGATCTCGAGG+AGG + chr4_2:44644465-44644484 Msa0601710:CDS 45.0%
AGAGAGAGTTTAGAGAGCAG+AGG + chr4_2:44644688-44644707 Msa0601710:CDS 45.0%
GAGAGAGTTTAGAGAGCAGA+GGG + chr4_2:44644689-44644708 Msa0601710:CDS 45.0%
AGAGAGCAGAGGGAAGAAAT+TGG + chr4_2:44644699-44644718 Msa0601710:CDS 45.0%
CAGAGGGAAGAAATTGGAAG+AGG + chr4_2:44644705-44644724 Msa0601710:CDS 45.0%
CTGCCAAGGGTGAAATATTG+CGG + chr4_2:44644737-44644756 Msa0601710:CDS 45.0%
CAACCGCAATATTTCACCCT+TGG - chr4_2:44644743-44644762 None:intergenic 45.0%
ATGGGTATAGAAGCGGAGAG+TGG - chr4_2:44638972-44638991 None:intergenic 50.0%
! GAGCTGCTTGGTGGTTCTAT+GGG - chr4_2:44639031-44639050 None:intergenic 50.0%
AACATACCACAACGGGAGCA+CGG - chr4_2:44639053-44639072 None:intergenic 50.0%
CGAGAGCAACATACCACAAC+GGG - chr4_2:44639060-44639079 None:intergenic 50.0%
GCAGTCCTCACATCACAAAC+CGG - chr4_2:44639400-44639419 None:intergenic 50.0%
CTGCCCCCACTTATTAACAG+AGG + chr4_2:44639416-44639435 Msa0601710:intron 50.0%
GCCCCCACTTATTAACAGAG+GGG + chr4_2:44639418-44639437 Msa0601710:intron 50.0%
CCCCCTCTGTTAATAAGTGG+GGG - chr4_2:44639422-44639441 None:intergenic 50.0%
CCCCCACTTATTAACAGAGG+GGG + chr4_2:44639419-44639438 Msa0601710:intron 50.0%
!! GGGGGTGTCTATCTCGTTAT+AGG + chr4_2:44639437-44639456 Msa0601710:intron 50.0%
!! GTGGGCTAGAAGTCTTACGT+TGG + chr4_2:44639553-44639572 Msa0601710:intron 50.0%
TGGTGTCCAACTCACATGTG+TGG + chr4_2:44639628-44639647 Msa0601710:intron 50.0%
GAAAAGGGGATATGCACAGC+TGG - chr4_2:44639967-44639986 None:intergenic 50.0%
TGTCCAATCCACACCAACGT+AGG - chr4_2:44640130-44640149 None:intergenic 50.0%
GACAACGTTTCCCTTCCTCT+CGG + chr4_2:44640420-44640439 Msa0601710:intron 50.0%
ACAACGTTTCCCTTCCTCTC+GGG + chr4_2:44640421-44640440 Msa0601710:intron 50.0%
TACGTCGTCTGCGAATAGAG+CGG - chr4_2:44640469-44640488 None:intergenic 50.0%
ACGTCTGAGAGGGAGATATC+GGG - chr4_2:44640527-44640546 None:intergenic 50.0%
TGACGAGACAACGTCTGAGA+GGG - chr4_2:44640537-44640556 None:intergenic 50.0%
ATGACGAGACAACGTCTGAG+AGG - chr4_2:44640538-44640557 None:intergenic 50.0%
TCTCCGTGTCTGTCTTGTGT+CGG + chr4_2:44640868-44640887 Msa0601710:intron 50.0%
GATCCGACACAAGACAGACA+CGG - chr4_2:44640874-44640893 None:intergenic 50.0%
GGACTTAGCATGCTTCCACT+AGG - chr4_2:44640955-44640974 None:intergenic 50.0%
TCTACCGAGCACCATAGTGA+TGG - chr4_2:44641178-44641197 None:intergenic 50.0%
TACCAGCCATCAGACTACTC+AGG + chr4_2:44641655-44641674 Msa0601710:intron 50.0%
GTGTGACCTGAGTAGTCTGA+TGG - chr4_2:44641664-44641683 None:intergenic 50.0%
AAGAGCAGGTCGTTTCGTTG+AGG + chr4_2:44643204-44643223 Msa0601710:CDS 50.0%
GAAGTTATCGAACGAGCAGG+AGG + chr4_2:44643241-44643260 Msa0601710:CDS 50.0%
GTCTGAAGAGAAGGCCACTT+TGG + chr4_2:44643823-44643842 Msa0601710:CDS 50.0%
! GAAGGCCACTTTGGATGCTA+AGG + chr4_2:44643832-44643851 Msa0601710:CDS 50.0%
ATCTGAGCTCGCCGAAGTTA+AGG + chr4_2:44644144-44644163 Msa0601710:CDS 50.0%
ACTACACTTGAAACCCGCGA+TGG + chr4_2:44644295-44644314 Msa0601710:CDS 50.0%
! AGAGGAATTGGCTTCTGCCA+AGG + chr4_2:44644723-44644742 Msa0601710:CDS 50.0%
! GAGGAATTGGCTTCTGCCAA+GGG + chr4_2:44644724-44644743 Msa0601710:CDS 50.0%
! GGAGCTGCTTGGTGGTTCTA+TGG - chr4_2:44639032-44639051 None:intergenic 55.0%
!! TTCAGGGGTACCTGCATGTC+TGG + chr4_2:44640104-44640123 Msa0601710:intron 55.0%
ATGTCTGGCCTACGTTGGTG+TGG + chr4_2:44640119-44640138 Msa0601710:intron 55.0%
TGGCCTACGTTGGTGTGGAT+TGG + chr4_2:44640124-44640143 Msa0601710:intron 55.0%
GAACAGAGTCCCGAGAGGAA+GGG - chr4_2:44640433-44640452 None:intergenic 55.0%
GACCTGAGTAGTCTGATGGC+TGG - chr4_2:44641660-44641679 None:intergenic 55.0%
TGGACAGGCAGCACCTGAAA+TGG + chr4_2:44642588-44642607 Msa0601710:intron 55.0%
CCAATACATGCCGGACACTC+AGG - chr4_2:44642854-44642873 None:intergenic 55.0%
CCTGAGTGTCCGGCATGTAT+TGG + chr4_2:44642851-44642870 Msa0601710:intron 55.0%
TCTCGGGCACCAATACATGC+CGG - chr4_2:44642863-44642882 None:intergenic 55.0%
!! CTCGGTGTTGGTGTCGTGTT+CGG + chr4_2:44642948-44642967 Msa0601710:intron 55.0%
ACTGCCGATGCCGCTGTTGA+AGG + chr4_2:44639159-44639178 Msa0601710:CDS 60.0%
CCAACGTAGGCCAGACATGC+AGG - chr4_2:44640117-44640136 None:intergenic 60.0%
CCTGCATGTCTGGCCTACGT+TGG + chr4_2:44640114-44640133 Msa0601710:intron 60.0%
CGAACAGAGTCCCGAGAGGA+AGG - chr4_2:44640434-44640453 None:intergenic 60.0%
ACTGCGAACAGAGTCCCGAG+AGG - chr4_2:44640438-44640457 None:intergenic 60.0%
TCTGATGGCTGGTAGCCCGA+CGG - chr4_2:44641649-44641668 None:intergenic 60.0%
TTAACACACTCCCCACCCCC+AGG - chr4_2:44641701-44641720 None:intergenic 60.0%
TGACGGTGTGCCTGAGTGTC+CGG + chr4_2:44642841-44642860 Msa0601710:intron 60.0%
! AACGGGAGCACGGAGCTGCT+TGG - chr4_2:44639043-44639062 None:intergenic 65.0%
GCTGGTAGCCCGACGGATCT+TGG - chr4_2:44641642-44641661 None:intergenic 65.0%
! GGGAGCACGGAGCTGCTTGG+TGG - chr4_2:44639040-44639059 None:intergenic 70.0%
GCAGCTCCGTGCTCCCGTTG+TGG + chr4_2:44639044-44639063 Msa0601710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 44638928 44645023 44638928 ID=Msa0601710;Name=Msa0601710
chr4_2 mRNA 44638928 44645023 44638928 ID=Msa0601710-mRNA-1;Parent=Msa0601710;Name=Msa0601710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.75|0.4|1|0.5|0.6|5|0|759
chr4_2 exon 44638928 44639065 44638928 ID=Msa0601710-mRNA-1:exon:9853;Parent=Msa0601710-mRNA-1
chr4_2 exon 44639087 44639198 44639087 ID=Msa0601710-mRNA-1:exon:9854;Parent=Msa0601710-mRNA-1
chr4_2 exon 44642456 44642499 44642456 ID=Msa0601710-mRNA-1:exon:9855;Parent=Msa0601710-mRNA-1
chr4_2 exon 44642595 44642735 44642595 ID=Msa0601710-mRNA-1:exon:9856;Parent=Msa0601710-mRNA-1
chr4_2 exon 44643179 44645023 44643179 ID=Msa0601710-mRNA-1:exon:9857;Parent=Msa0601710-mRNA-1
chr4_2 CDS 44638928 44639065 44638928 ID=Msa0601710-mRNA-1:cds;Parent=Msa0601710-mRNA-1
chr4_2 CDS 44639087 44639198 44639087 ID=Msa0601710-mRNA-1:cds;Parent=Msa0601710-mRNA-1
chr4_2 CDS 44642456 44642499 44642456 ID=Msa0601710-mRNA-1:cds;Parent=Msa0601710-mRNA-1
chr4_2 CDS 44642595 44642735 44642595 ID=Msa0601710-mRNA-1:cds;Parent=Msa0601710-mRNA-1
chr4_2 CDS 44643179 44645023 44643179 ID=Msa0601710-mRNA-1:cds;Parent=Msa0601710-mRNA-1
Gene Sequence

>Msa0601710

ATGGGTTTTGTTGGAGCAGCGAGTAGCACATCTTCATTGCTCCACTCTCCGCTTCTATACCCATTTCTCTTCCCTTCTTCTTCTTCCTCTTCTTGTCGTTCCCATAGAACCACCAAGCAGCTCCGTGCTCCCGTTGTGCAAGATCCAATATGCAACAAGAGAACGTTTCTGTTAATGGGTGCTGCTGTTCTTCCCTTTCTCAAATTCAACACTGCCGATGCCGCTGTTGAAGGAATTCTTTCATCACCAAAAGAAAGTGAGGTGAAGATACCAGAGGATAAAAAGCTAGGCGAGGCAGCACCTGAAATGGAGAAACCATCTACTTCCTTTGTGTCTCTTCTGAATGGAATTGGAATCATATCTTCTGGTCTGTTGGGGGCTCTTTATGCACTTGCTCAGAAAGAAAAGTCGACTGCTGTTGCAACAATAGAAACAATGAGCAACAAACTGAAGGAAAAAGAAGAGCAGGTCGTTTCGTTGAGGAAGAACTACGAGTTGAAGTTATCGAACGAGCAGGAGGAACAAACCAAACTACTTGGAAAGGCAAAGGAAGAGCAGAAAGCTCTGATTGAACAACTAAATTCTGCAAAGAGTACTGTCACCAGTTTGGGAAAGGAGCTAAAAAGCGAGAAAAGTTTGGTTGCAGAGCTAAAACTTCAAATTGACAGACTTGAAGTCGATCTTACAAAGGCTGATACGGATAAGAAAGATCTTGAAAACAAATTGAAAGAAAAGGTAGATTCTATTGAAATTTTACAACAAAGAATTAATCTGCTTAGTGAAGACCTCAAGGACAAAGAACATGTTGTTCAGAGTCTGAATTCATCCCTTGCAGAAAAGGAGTTGGAATTGAGAAATTTGAACTCTACCTATGACCAAACCAAAGATGAATTATCCAATGCTCATTTTCATATTCAAGGGTTAAAAGATGAAATACTGAAAAGCCAAGAGGAACTAGAAGGAAAAGATTCCTTGGTGATGGAACTAAATTCAAGAGTGAGTTCCTTAACTCTTGAGAATAATAACTTAAGAAGTGAATATGATGTATTGGAGAAGGAATTCAATGACCAAAAGTTGAAGTCTGAAGAGAAGGCCACTTTGGATGCTAAGGTTTTGAAAGAAAAAGAAGACGAGCTTCATCAGCTAACGGATAAATTTGAACTCGCCTTAAATGAATCAAGCGAAAACCAGGTTGTCATCGCTGATTTAACCAAAGAACGAGAAGGTTTAAAAGAGTTCCTAGATAATGAATCAAAGAAAGTGAGTAATTTGAAGTATGAACTCCAAGTTACTCAAGAGAATCTTGAAAATTCAAGAAATGACTCTACTGAACTGGAAAAACAGCTAAGTAAGTCAAACAATCTGTGCAAAGATCTTGAGCTTCAGGTCTCTAAGCTTTCATCTGAGCTCGCCGAAGTTAAGGATTCGCTACAGAGTAGACTTGATGATGCAAAACTCGAGGCGGAAAAATTGACTAAGGAGCTGATAACAGTAAAGGAACATTTGAAGAAAGCCGAAGAAGAGCTGCAAAGTACCTCTCATGAACTAACGACTACACTTGAAACCCGCGATGGCCTACAAAAAGAATTAATTGAGATCTACAAAAAGGCTGAAGTCACATCAGAGGTTTTGAAGGAAGAAAAGAAGCTAGCTGCTTCTTTGAACAACGATTTACAGGCTTTGAAGGAGCAAGTATTGAAGGACAAGGAGTCACGAAGAACTGTTGAAATGGATCTCGAGGAGGCTACCAAATCACTAGATGAAATGAACCGAAATTCGGTGATCCTTTCTAGTGAATTAGAAGAGGCTAAATCACTTATTTCTAGCCTTGAAAATGAGAAAGAGGTTCTTGCCAAGTACCTTACAGAACAAAGAAATGCAAGCAAAGAGGCCCAAGAAAACATTGAAGATGCTCATAACCTCATTACTAGACTTGGCAAAGAGAGAGAGAGTTTAGAGAGCAGAGGGAAGAAATTGGAAGAGGAATTGGCTTCTGCCAAGGGTGAAATATTGCGGTTGAGAAGTCAGATCAATTCTTCAAAATCAAAAGTTGTTAAAAATGAGCAGCAAGTACAGAAAAGTGAAGCTGAAACCAATTCTTCAAAATCAAAAGTAGTTAACAATGAGCAGCAAGTACAAGAAAATGCAGCTGAAACCAATTCTTCAAAATCAAAAGTTGTTAACAATGAGCAGCAGGTACAGAAAAATGAAGCCGAAACCAAAGAAGTCGTTGTAAGTGCACGGAAGAATGTTCGAAGAAGAAAGACTAATCCTTCATAA

Protein sequence

>Msa0601710

MGFVGAASSTSSLLHSPLLYPFLFPSSSSSSCRSHRTTKQLRAPVVQDPICNKRTFLLMGAAVLPFLKFNTADAAVEGILSSPKESEVKIPEDKKLGEAAPEMEKPSTSFVSLLNGIGIISSGLLGALYALAQKEKSTAVATIETMSNKLKEKEEQVVSLRKNYELKLSNEQEEQTKLLGKAKEEQKALIEQLNSAKSTVTSLGKELKSEKSLVAELKLQIDRLEVDLTKADTDKKDLENKLKEKVDSIEILQQRINLLSEDLKDKEHVVQSLNSSLAEKELELRNLNSTYDQTKDELSNAHFHIQGLKDEILKSQEELEGKDSLVMELNSRVSSLTLENNNLRSEYDVLEKEFNDQKLKSEEKATLDAKVLKEKEDELHQLTDKFELALNESSENQVVIADLTKEREGLKEFLDNESKKVSNLKYELQVTQENLENSRNDSTELEKQLSKSNNLCKDLELQVSKLSSELAEVKDSLQSRLDDAKLEAEKLTKELITVKEHLKKAEEELQSTSHELTTTLETRDGLQKELIEIYKKAEVTSEVLKEEKKLAASLNNDLQALKEQVLKDKESRRTVEMDLEEATKSLDEMNRNSVILSSELEEAKSLISSLENEKEVLAKYLTEQRNASKEAQENIEDAHNLITRLGKERESLESRGKKLEEELASAKGEILRLRSQINSSKSKVVKNEQQVQKSEAETNSSKSKVVNNEQQVQENAAETNSSKSKVVNNEQQVQKNEAETKEVVVSARKNVRRRKTNPS*