Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061960 | PNY13670.1 | 97.835 | 231 | 5 | 0 | 1 | 231 | 77 | 307 | 1.45e-163 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061960 | sp|Q3C251|ARGJ_CITLA | 79.574 | 235 | 44 | 2 | 1 | 231 | 226 | 460 | 1.73e-130 | 379 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061960 | A0A2K3PEF3 | 97.835 | 231 | 5 | 0 | 1 | 231 | 77 | 307 | 6.94e-164 | 464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0061960 | Msa0122620 | 0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0061960 | Msa0122630 | 0.841536 | 4.476470e-58 | -8.615850e-47 |
| Msa0061960 | Msa1169710 | 0.803223 | 3.861735e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061960 | MtrunA17_Chr1g0182411 | 99.142 | 233 | 0 | 1 | 1 | 231 | 238 | 470 | 1.54e-167 | 470 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0061960 | AT2G37500.2 | 78.970 | 233 | 47 | 1 | 1 | 231 | 177 | 409 | 1.70e-130 | 374 |
| Msa0061960 | AT2G37500.1 | 78.970 | 233 | 47 | 1 | 1 | 231 | 236 | 468 | 1.34e-129 | 374 |
Find 124 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGCATGGTAGCCATATT+TGG | 0.195244 | 1_2:-20971604 | None:intergenic |
| GTTCCACCCTAAGTAAATTT+TGG | 0.210785 | 1_2:-20973451 | None:intergenic |
| TGTCTAACTCTTATTATTCT+TGG | 0.247033 | 1_2:+20971513 | Msa0061960:five_prime_UTR |
| CAGAATAACTTACATAACTA+TGG | 0.288580 | 1_2:-20974756 | None:intergenic |
| GCTTTGGCCAGTGGGCTGTC+TGG | 0.306110 | 1_2:+20972123 | Msa0061960:CDS |
| AAATTTACTTAGGGTGGAAC+TGG | 0.318789 | 1_2:+20973454 | Msa0061960:CDS |
| ATTGACTTAAATAGATGAAT+AGG | 0.319503 | 1_2:-20975168 | None:intergenic |
| CTCTTATTATTCTTGGGTAT+TGG | 0.321970 | 1_2:+20971520 | Msa0061960:five_prime_UTR |
| GTTAGAATTCAGATATCTAT+TGG | 0.326828 | 1_2:+20974441 | Msa0061960:CDS |
| ATTATTCTTGGGTATTGGTT+AGG | 0.327865 | 1_2:+20971525 | Msa0061960:five_prime_UTR |
| GATTAACACGGGATACAAAA+TGG | 0.327893 | 1_2:-20974840 | None:intergenic |
| GTTAGAAGCTACTGAAAATC+TGG | 0.327906 | 1_2:+20974947 | Msa0061960:three_prime_UTR |
| TGCTGCTGCAGCTGGTTACT+CGG | 0.329195 | 1_2:+20973415 | Msa0061960:CDS |
| AGCAGCAATGCGTCCCCAAT+TGG | 0.330422 | 1_2:-20973399 | None:intergenic |
| GATCATCAGGCTGCTGTATA+TGG | 0.333048 | 1_2:+20973368 | Msa0061960:intron |
| GTCTAACTCTTATTATTCTT+GGG | 0.339733 | 1_2:+20971514 | Msa0061960:five_prime_UTR |
| TGAAATAACATACAGTTATC+TGG | 0.352882 | 1_2:-20971781 | None:intergenic |
| CAATGATACTGTTATTGCTT+TGG | 0.355377 | 1_2:+20972107 | Msa0061960:CDS |
| GCAGCAATGCGTCCCCAATT+GGG | 0.356206 | 1_2:-20973398 | None:intergenic |
| TTAAATAGATGAATAGGATT+TGG | 0.360658 | 1_2:-20975162 | None:intergenic |
| TCCATCCCAAGCTATAGATT+TGG | 0.369474 | 1_2:-20972672 | None:intergenic |
| ATCATCTTGCTTCAGGTAGA+TGG | 0.372651 | 1_2:+20972072 | Msa0061960:intron |
| TGGAATGATCCACCCAAATA+TGG | 0.374514 | 1_2:+20971591 | Msa0061960:CDS |
| ATATCGTACACGTGCCAATA+TGG | 0.385844 | 1_2:+20974920 | Msa0061960:three_prime_UTR |
| CTTTGGCCAGTGGGCTGTCT+GGG | 0.389273 | 1_2:+20972124 | Msa0061960:CDS |
| AGCTTCTAACAATGCCATAT+TGG | 0.391576 | 1_2:-20974934 | None:intergenic |
| CAGTACGCGTCATATTCATT+TGG | 0.392085 | 1_2:-20974685 | None:intergenic |
| GGAAGAACTAAGGTCAGAAT+TGG | 0.397818 | 1_2:+20971550 | Msa0061960:five_prime_UTR |
| CTGTTATTGCTTTGGCCAGT+GGG | 0.403150 | 1_2:+20972115 | Msa0061960:CDS |
| CCTTGGTGTCAAATTAAACT+TGG | 0.405781 | 1_2:+20975136 | Msa0061960:three_prime_UTR |
| CGATGAGGCAATTCAACTTC+AGG | 0.407353 | 1_2:+20972173 | Msa0061960:CDS |
| GAAGAACTAAGGTCAGAATT+GGG | 0.413959 | 1_2:+20971551 | Msa0061960:five_prime_UTR |
| GGACGCATTGCTGCTGCAGC+TGG | 0.415749 | 1_2:+20973407 | Msa0061960:CDS |
| ACTTTGTAGGTCAGTGTGAC+TGG | 0.416559 | 1_2:+20973217 | Msa0061960:intron |
| TTCTTGGGTATTGGTTAGGT+TGG | 0.417800 | 1_2:+20971529 | Msa0061960:five_prime_UTR |
| CAAAGCAATAACAGTATCAT+TGG | 0.422503 | 1_2:-20972106 | None:intergenic |
| CCAAATATGGCTACCATGCT+CGG | 0.423756 | 1_2:+20971604 | Msa0061960:CDS |
| ATCTATTTAAGTCAATCTAA+AGG | 0.427969 | 1_2:+20975175 | Msa0061960:three_prime_UTR |
| CGAGCATGGTAGCCATATTT+GGG | 0.434166 | 1_2:-20971603 | None:intergenic |
| CCTTGTTATCTAAAGGAGAT+AGG | 0.435088 | 1_2:+20975102 | Msa0061960:three_prime_UTR |
| CCGGGGTAACCAGTGACGTT+TGG | 0.436852 | 1_2:+20971720 | Msa0061960:CDS |
| GCTGCTGCAGCTGGTTACTC+GGG | 0.438224 | 1_2:+20973416 | Msa0061960:CDS |
| TATATGGTAGAGACCCCAAT+TGG | 0.443479 | 1_2:+20973384 | Msa0061960:CDS |
| CGTTTGGAGAAAGATGGTTC+AGG | 0.445690 | 1_2:+20971736 | Msa0061960:CDS |
| TGCACACAAGACAAATGAAA+AGG | 0.451692 | 1_2:-20974869 | None:intergenic |
| AGTAGTTATCTGAGAAAGGC+TGG | 0.454885 | 1_2:+20974402 | Msa0061960:CDS |
| CTGCCTCTGACAGCATTCCT+AGG | 0.455078 | 1_2:-20975043 | None:intergenic |
| GATACTTTGCTAATGGATGG+TGG | 0.456094 | 1_2:+20973479 | Msa0061960:CDS |
| GTCTTGCCAAATCTATAGCT+TGG | 0.456989 | 1_2:+20972666 | Msa0061960:CDS |
| TTCTGAAATCAGTTCAGAAA+GGG | 0.464811 | 1_2:+20974774 | Msa0061960:three_prime_UTR |
| ACAGATACAAATGATGTTCA+AGG | 0.464949 | 1_2:-20975010 | None:intergenic |
| CAAATATGGCTACCATGCTC+GGG | 0.472267 | 1_2:+20971605 | Msa0061960:CDS |
| TAACCAAAATTTACTTAGGG+TGG | 0.472742 | 1_2:+20973448 | Msa0061960:CDS |
| CTAAAGGAGATAGGATCAAA+TGG | 0.473949 | 1_2:+20975111 | Msa0061960:three_prime_UTR |
| CCCCATGCTTGTCCATGGCC+CGG | 0.480206 | 1_2:-20974610 | None:intergenic |
| ACCGGGCCATGGACAAGCAT+GGG | 0.482124 | 1_2:+20974609 | Msa0061960:CDS |
| TACGAACTGTTGCAGGGGTG+AGG | 0.490264 | 1_2:+20974377 | Msa0061960:intron |
| TGGTTAGGTTGGAAGAACTA+AGG | 0.494399 | 1_2:+20971540 | Msa0061960:five_prime_UTR |
| TAGGTAATAACAACTGATGC+CGG | 0.496467 | 1_2:+20971701 | Msa0061960:intron |
| GACCGGGCCATGGACAAGCA+TGG | 0.499609 | 1_2:+20974608 | Msa0061960:CDS |
| CATCTTTCTCCAAACGTCAC+TGG | 0.501222 | 1_2:-20971729 | None:intergenic |
| ATATCAGCCTTGTTATCTAA+AGG | 0.502389 | 1_2:+20975095 | Msa0061960:three_prime_UTR |
| AATTTACTTAGGGTGGAACT+GGG | 0.503712 | 1_2:+20973455 | Msa0061960:CDS |
| TCTTGCCAAATCTATAGCTT+GGG | 0.504405 | 1_2:+20972667 | Msa0061960:CDS |
| CTGCTGCAGCTGGTTACTCG+GGG | 0.508457 | 1_2:+20973417 | Msa0061960:CDS |
| CTAGTTAATAAACCTTCACT+AGG | 0.512771 | 1_2:+20974802 | Msa0061960:three_prime_UTR |
| AGGTAATAACAACTGATGCC+GGG | 0.513509 | 1_2:+20971702 | Msa0061960:intron |
| ATTCTGAAATCAGTTCAGAA+AGG | 0.518709 | 1_2:+20974773 | Msa0061960:three_prime_UTR |
| GGCTAGTAGTTATCTGAGAA+AGG | 0.519391 | 1_2:+20974398 | Msa0061960:CDS |
| CCTACTAACAGGCAATGGAC+CGG | 0.525163 | 1_2:+20974591 | Msa0061960:intron |
| ATATGGTAGAGACCCCAATT+GGG | 0.526420 | 1_2:+20973385 | Msa0061960:CDS |
| ACAGGCAATGGACCGGGCCA+TGG | 0.528084 | 1_2:+20974598 | Msa0061960:intron |
| AGGAATGCTGTCAGAGGCAG+AGG | 0.528342 | 1_2:+20975046 | Msa0061960:three_prime_UTR |
| CCTATCTCCTTTAGATAACA+AGG | 0.530698 | 1_2:-20975102 | None:intergenic |
| GGGAACCACAATCGTTTGAC+CGG | 0.533492 | 1_2:+20973501 | Msa0061960:CDS |
| GCTTAGCCCAGACAGCCCAC+TGG | 0.537832 | 1_2:-20972130 | None:intergenic |
| CAGTGACGTTTGGAGAAAGA+TGG | 0.539729 | 1_2:+20971730 | Msa0061960:CDS |
| ATACTTTGCTAATGGATGGT+GGG | 0.546761 | 1_2:+20973480 | Msa0061960:CDS |
| ACTGTTATTGCTTTGGCCAG+TGG | 0.547196 | 1_2:+20972114 | Msa0061960:CDS |
| GTAGTTATCTGAGAAAGGCT+GGG | 0.548834 | 1_2:+20974403 | Msa0061960:CDS |
| TACTTTGCTAATGGATGGTG+GGG | 0.550604 | 1_2:+20973481 | Msa0061960:CDS |
| GGGTTGACATTACCGCATCT+AGG | 0.552099 | 1_2:-20972200 | None:intergenic |
| CACAGCCCCATGCTTGTCCA+TGG | 0.552391 | 1_2:-20974615 | None:intergenic |
| TTTACTTAGGGTGGAACTGG+GGG | 0.556242 | 1_2:+20973457 | Msa0061960:CDS |
| CAGCAATGCGTCCCCAATTG+GGG | 0.558774 | 1_2:-20973397 | None:intergenic |
| TAGTGAGGCTGAAGCTGCAA+AGG | 0.559467 | 1_2:+20973246 | Msa0061960:CDS |
| GCACACAAGACAAATGAAAA+GGG | 0.560279 | 1_2:-20974868 | None:intergenic |
| CTACTAACAGGCAATGGACC+GGG | 0.561183 | 1_2:+20974592 | Msa0061960:intron |
| CCGGGCCATGGACAAGCATG+GGG | 0.563162 | 1_2:+20974610 | Msa0061960:CDS |
| TAGTTAATAAACCTTCACTA+GGG | 0.573255 | 1_2:+20974803 | Msa0061960:three_prime_UTR |
| TCTTACCGGTCAAACGATTG+TGG | 0.575496 | 1_2:-20973506 | None:intergenic |
| GATAGGATCAAATGGCACCT+TGG | 0.590725 | 1_2:+20975119 | Msa0061960:three_prime_UTR |
| ACAAGACAAATGAAAAGGGT+TGG | 0.592319 | 1_2:-20974864 | None:intergenic |
| AACAGAAACGCCCCTAGTGA+AGG | 0.593622 | 1_2:-20974814 | None:intergenic |
| ATTTACTTAGGGTGGAACTG+GGG | 0.594904 | 1_2:+20973456 | Msa0061960:CDS |
| GAAGCTACTGAAAATCTGGT+TGG | 0.596202 | 1_2:+20974951 | Msa0061960:three_prime_UTR |
| TAGTTATCTGAGAAAGGCTG+GGG | 0.597977 | 1_2:+20974404 | Msa0061960:CDS |
| TGTCCTTTCCAGGTAATGCA+AGG | 0.600909 | 1_2:+20972644 | Msa0061960:intron |
| AGGAGCGACGTGCCTCATTG+AGG | 0.601458 | 1_2:+20972697 | Msa0061960:CDS |
| CCAAACGTCACTGGTTACCC+CGG | 0.608020 | 1_2:-20971720 | None:intergenic |
| CCAAGTTTAATTTGACACCA+AGG | 0.611379 | 1_2:-20975136 | None:intergenic |
| ATAAGCAGTTATTAAGCGCA+CGG | 0.611956 | 1_2:+20974893 | Msa0061960:three_prime_UTR |
| GCCAAATCTATAGCTTGGGA+TGG | 0.612673 | 1_2:+20972671 | Msa0061960:CDS |
| AAGAACTAAGGTCAGAATTG+GGG | 0.613757 | 1_2:+20971552 | Msa0061960:five_prime_UTR |
| TCTATAGCTTGGGATGGAGA+AGG | 0.616430 | 1_2:+20972677 | Msa0061960:CDS |
| AAAGGGTTGGTGATTAACAC+GGG | 0.616984 | 1_2:-20974851 | None:intergenic |
| AGTAAGACATACCCCGAGCA+TGG | 0.619941 | 1_2:-20971617 | None:intergenic |
| AAAAGGGTTGGTGATTAACA+CGG | 0.629176 | 1_2:-20974852 | None:intergenic |
| GGGGATACTTTGCTAATGGA+TGG | 0.630175 | 1_2:+20973476 | Msa0061960:CDS |
| GGTAATAACAACTGATGCCG+GGG | 0.642212 | 1_2:+20971703 | Msa0061960:intron |
| TATGGTAGAGACCCCAATTG+GGG | 0.642606 | 1_2:+20973386 | Msa0061960:CDS |
| GCACCTAGGAATGCTGTCAG+AGG | 0.643108 | 1_2:+20975040 | Msa0061960:three_prime_UTR |
| TATCTGTGCTCACTGCACCT+AGG | 0.644776 | 1_2:+20975026 | Msa0061960:three_prime_UTR |
| CGATTATGTCAAAATAAATG+CGG | 0.654467 | 1_2:+20974648 | Msa0061960:CDS |
| TGCTGCAGCTGGTTACTCGG+GGG | 0.654672 | 1_2:+20973418 | Msa0061960:CDS |
| AGAAAGGCTGGGGAGACTCA+CGG | 0.655065 | 1_2:+20974414 | Msa0061960:CDS |
| GCATGGTAGCCATATTTGGG+TGG | 0.663519 | 1_2:-20971600 | None:intergenic |
| AGAACTAAGGTCAGAATTGG+GGG | 0.666774 | 1_2:+20971553 | Msa0061960:five_prime_UTR |
| ACTTCAGGCATGCCTAGATG+CGG | 0.678693 | 1_2:+20972188 | Msa0061960:CDS |
| AGTTAATAAACCTTCACTAG+GGG | 0.680990 | 1_2:+20974804 | Msa0061960:three_prime_UTR |
| AAATATGGCTACCATGCTCG+GGG | 0.688782 | 1_2:+20971606 | Msa0061960:CDS |
| TTCTTCTCTAGACAGCGATG+AGG | 0.718882 | 1_2:+20972158 | Msa0061960:CDS |
| GTATAAAACAAACCTCAATG+AGG | 0.723765 | 1_2:-20972709 | None:intergenic |
| TGTGACTGGTGCAAATAGTG+AGG | 0.734036 | 1_2:+20973231 | Msa0061960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACTCAAAAATATATATATTT+TGG | + | chr1_2:20972020-20972039 | Msa0061960:intron | 10.0% |
| !! | ATAATTATGGAAATTGTAAA+GGG | - | chr1_2:20972223-20972242 | None:intergenic | 15.0% |
| !! | AATAATTATGGAAATTGTAA+AGG | - | chr1_2:20972224-20972243 | None:intergenic | 15.0% |
| !! | ATGATATGACAAAATAATTA+TGG | - | chr1_2:20972236-20972255 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTGCAAGAAA+AGG | - | chr1_2:20972494-20972513 | None:intergenic | 15.0% |
| !! | ATTAACCAAATATAAATACA+AGG | + | chr1_2:20972857-20972876 | Msa0061960:intron | 15.0% |
| !! | TTAAACCTTGTATTTATATT+TGG | - | chr1_2:20972865-20972884 | None:intergenic | 15.0% |
| !!! | AATAATTTTTTGTTTGAATC+TGG | + | chr1_2:20973321-20973340 | Msa0061960:intron | 15.0% |
| !!! | TTTTAACCAAAATTTACTTA+GGG | + | chr1_2:20973445-20973464 | Msa0061960:CDS | 15.0% |
| !! | ATTAAAGAATCAATACAATA+AGG | + | chr1_2:20973794-20973813 | Msa0061960:intron | 15.0% |
| !! | AACTTTATAATATAGATAGA+CGG | - | chr1_2:20974357-20974376 | None:intergenic | 15.0% |
| !!! | CTTTTTGAATGTTAAAATAG+TGG | + | chr1_2:20972437-20972456 | Msa0061960:intron | 20.0% |
| !! | ACATGAAATTTATCATTAAG+AGG | + | chr1_2:20972584-20972603 | Msa0061960:intron | 20.0% |
| !! | ACAGTTATATTGTGTATAAA+TGG | + | chr1_2:20973103-20973122 | Msa0061960:intron | 20.0% |
| !!! | CTTTTAACCAAAATTTACTT+AGG | + | chr1_2:20973444-20973463 | Msa0061960:CDS | 20.0% |
| !! | AAGGTGTATAATAAAAAATC+CGG | + | chr1_2:20973813-20973832 | Msa0061960:intron | 20.0% |
| !! | ATTGTTTAGTCAAATTATGT+AGG | + | chr1_2:20973880-20973899 | Msa0061960:intron | 20.0% |
| !!! | TTAGTTTTTGACAGTTAATA+TGG | - | chr1_2:20974290-20974309 | None:intergenic | 20.0% |
| !! | ATAATAAACATGACCATATT+AGG | - | chr1_2:20974556-20974575 | None:intergenic | 20.0% |
| !! | TTAAATAGATGAATAGGATT+TGG | - | chr1_2:20975165-20975184 | None:intergenic | 20.0% |
| !!! | ATTGACTTAAATAGATGAAT+AGG | - | chr1_2:20975171-20975190 | None:intergenic | 20.0% |
| ! | TGTCTAACTCTTATTATTCT+TGG | + | chr1_2:20971513-20971532 | Msa0061960:five_prime_UTR | 25.0% |
| ! | GTCTAACTCTTATTATTCTT+GGG | + | chr1_2:20971514-20971533 | Msa0061960:five_prime_UTR | 25.0% |
| ! | TGAAATAACATACAGTTATC+TGG | - | chr1_2:20971784-20971803 | None:intergenic | 25.0% |
| !! | TTGTTTGTCAAAAGTGTATT+TGG | + | chr1_2:20971951-20971970 | Msa0061960:intron | 25.0% |
| !!! | TATTTTTGAGTAAAAGATCG+TGG | - | chr1_2:20972011-20972030 | None:intergenic | 25.0% |
| ! | AGTATATTATTCTGTTCAAC+AGG | - | chr1_2:20972270-20972289 | None:intergenic | 25.0% |
| !!! | TTATTTTTTGCAAGAAAAGG+AGG | - | chr1_2:20972491-20972510 | None:intergenic | 25.0% |
| ! | AACAAAAATCTGAATAGATG+AGG | - | chr1_2:20972836-20972855 | None:intergenic | 25.0% |
| ! | TACACAATATAACTGTAACT+AGG | - | chr1_2:20973099-20973118 | None:intergenic | 25.0% |
| ! | AACAAAAACATCAATCTTAC+CGG | - | chr1_2:20973523-20973542 | None:intergenic | 25.0% |
| ! | TTCTTAGAACAATTAACAGT+AGG | - | chr1_2:20973622-20973641 | None:intergenic | 25.0% |
| ! | ATAACTGTATATTTACTGAC+TGG | - | chr1_2:20973689-20973708 | None:intergenic | 25.0% |
| ! | AAATATACAGTTATTGATGC+TGG | + | chr1_2:20973695-20973714 | Msa0061960:intron | 25.0% |
| ! | AATATACAGTTATTGATGCT+GGG | + | chr1_2:20973696-20973715 | Msa0061960:intron | 25.0% |
| ! | TTACCATTACTATTGCATAA+AGG | + | chr1_2:20973732-20973751 | Msa0061960:intron | 25.0% |
| ! | TTTCCTTTATGCAATAGTAA+TGG | - | chr1_2:20973738-20973757 | None:intergenic | 25.0% |
| ! | AGGTGTATAATAAAAAATCC+GGG | + | chr1_2:20973814-20973833 | Msa0061960:intron | 25.0% |
| ! | GGACAAGATAAATTGTATAA+AGG | + | chr1_2:20973836-20973855 | Msa0061960:intron | 25.0% |
| !! | ATCTTGAGCTTTTCATTTTA+TGG | - | chr1_2:20973907-20973926 | None:intergenic | 25.0% |
| !!! | AGCAAGATTTTTATTTTGAC+AGG | - | chr1_2:20974029-20974048 | None:intergenic | 25.0% |
| ! | ATATAAATAGCGCACAATAT+TGG | - | chr1_2:20974219-20974238 | None:intergenic | 25.0% |
| ! | CTGTTTATTGTCTAATGAAT+TGG | + | chr1_2:20974242-20974261 | Msa0061960:intron | 25.0% |
| ! | TTTATTGTCTAATGAATTGG+TGG | + | chr1_2:20974245-20974264 | Msa0061960:intron | 25.0% |
| ! | ACAATAGCATAAGGTATAAA+CGG | - | chr1_2:20974334-20974353 | None:intergenic | 25.0% |
| ! | GTTAGAATTCAGATATCTAT+TGG | + | chr1_2:20974441-20974460 | Msa0061960:CDS | 25.0% |
| ! | TGTCTTGAATTTATAAGCAT+GGG | + | chr1_2:20974508-20974527 | Msa0061960:intron | 25.0% |
| ! | CGATTATGTCAAAATAAATG+CGG | + | chr1_2:20974648-20974667 | Msa0061960:CDS | 25.0% |
| ! | CAGAATAACTTACATAACTA+TGG | - | chr1_2:20974759-20974778 | None:intergenic | 25.0% |
| ! | TAGTTAATAAACCTTCACTA+GGG | + | chr1_2:20974803-20974822 | Msa0061960:three_prime_UTR | 25.0% |
| CTCTTATTATTCTTGGGTAT+TGG | + | chr1_2:20971520-20971539 | Msa0061960:five_prime_UTR | 30.0% | |
| !! | ATTATTCTTGGGTATTGGTT+AGG | + | chr1_2:20971525-20971544 | Msa0061960:five_prime_UTR | 30.0% |
| GCTTTCATGTTTCGAATATA+TGG | + | chr1_2:20971644-20971663 | Msa0061960:intron | 30.0% | |
| TAGACTGCAAATTCAGTTAA+TGG | + | chr1_2:20971814-20971833 | Msa0061960:intron | 30.0% | |
| AAATTCAGTTAATGGCATAG+TGG | + | chr1_2:20971822-20971841 | Msa0061960:intron | 30.0% | |
| CAAAGCAATAACAGTATCAT+TGG | - | chr1_2:20972109-20972128 | None:intergenic | 30.0% | |
| CAATGATACTGTTATTGCTT+TGG | + | chr1_2:20972107-20972126 | Msa0061960:CDS | 30.0% | |
| TGATGTACTTCAATTCTTGT+TGG | + | chr1_2:20972289-20972308 | Msa0061960:intron | 30.0% | |
| ! | GCTATTGTTATAGTACGTTT+TGG | + | chr1_2:20972370-20972389 | Msa0061960:intron | 30.0% |
| !! | TACGTTTTGGCATGTTATTA+AGG | + | chr1_2:20972383-20972402 | Msa0061960:intron | 30.0% |
| ! | ATGTTATTAAGGTGTGGTTT+TGG | + | chr1_2:20972394-20972413 | Msa0061960:intron | 30.0% |
| ! | TGTTATTAAGGTGTGGTTTT+GGG | + | chr1_2:20972395-20972414 | Msa0061960:intron | 30.0% |
| TTTATTTACTTGTCCTTTCC+AGG | + | chr1_2:20972634-20972653 | Msa0061960:intron | 30.0% | |
| GTATAAAACAAACCTCAATG+AGG | - | chr1_2:20972712-20972731 | None:intergenic | 30.0% | |
| TGTAAGATGAAAGCAATATC+AGG | - | chr1_2:20972798-20972817 | None:intergenic | 30.0% | |
| AAATGCAGTGAAGATAATGA+TGG | - | chr1_2:20972957-20972976 | None:intergenic | 30.0% | |
| TGATCATTGTGTTAGAAGAT+AGG | - | chr1_2:20973353-20973372 | None:intergenic | 30.0% | |
| TAACCAAAATTTACTTAGGG+TGG | + | chr1_2:20973448-20973467 | Msa0061960:CDS | 30.0% | |
| ATATACAGTTATTGATGCTG+GGG | + | chr1_2:20973697-20973716 | Msa0061960:intron | 30.0% | |
| AATCTCTAATGAATGCTATC+AGG | - | chr1_2:20973777-20973796 | None:intergenic | 30.0% | |
| GGTGTATAATAAAAAATCCG+GGG | + | chr1_2:20973815-20973834 | Msa0061960:intron | 30.0% | |
| TATACAATTTATCTTGTCCC+CGG | - | chr1_2:20973835-20973854 | None:intergenic | 30.0% | |
| GATCAACATATTGTATGATC+AGG | - | chr1_2:20974104-20974123 | None:intergenic | 30.0% | |
| ATAAGAATGTACCATACTAC+CGG | - | chr1_2:20974138-20974157 | None:intergenic | 30.0% | |
| TTCAAGACAGTTCAAAAAGA+GGG | - | chr1_2:20974497-20974516 | None:intergenic | 30.0% | |
| ATTCAAGACAGTTCAAAAAG+AGG | - | chr1_2:20974498-20974517 | None:intergenic | 30.0% | |
| CTGTCTTGAATTTATAAGCA+TGG | + | chr1_2:20974507-20974526 | Msa0061960:intron | 30.0% | |
| GTCTTGAATTTATAAGCATG+GGG | + | chr1_2:20974509-20974528 | Msa0061960:intron | 30.0% | |
| !!! | TCTTTTTTGTCCTCCTAATA+TGG | + | chr1_2:20974540-20974559 | Msa0061960:intron | 30.0% |
| ATAAACATGACCATATTAGG+AGG | - | chr1_2:20974553-20974572 | None:intergenic | 30.0% | |
| ! | ATATCTGTTTTCCTACTAAC+AGG | + | chr1_2:20974580-20974599 | Msa0061960:intron | 30.0% |
| ! | ACTATGGTTTTCTAGATGAA+CGG | - | chr1_2:20974743-20974762 | None:intergenic | 30.0% |
| !! | ATTCTGAAATCAGTTCAGAA+AGG | + | chr1_2:20974773-20974792 | Msa0061960:three_prime_UTR | 30.0% |
| !! | TTCTGAAATCAGTTCAGAAA+GGG | + | chr1_2:20974774-20974793 | Msa0061960:three_prime_UTR | 30.0% |
| CTAGTTAATAAACCTTCACT+AGG | + | chr1_2:20974802-20974821 | Msa0061960:three_prime_UTR | 30.0% | |
| AGTTAATAAACCTTCACTAG+GGG | + | chr1_2:20974804-20974823 | Msa0061960:three_prime_UTR | 30.0% | |
| ACAGATACAAATGATGTTCA+AGG | - | chr1_2:20975013-20975032 | None:intergenic | 30.0% | |
| !! | ATATCAGCCTTGTTATCTAA+AGG | + | chr1_2:20975095-20975114 | Msa0061960:three_prime_UTR | 30.0% |
| GAAGAACTAAGGTCAGAATT+GGG | + | chr1_2:20971551-20971570 | Msa0061960:five_prime_UTR | 35.0% | |
| AAGAACTAAGGTCAGAATTG+GGG | + | chr1_2:20971552-20971571 | Msa0061960:five_prime_UTR | 35.0% | |
| TAGGTAATAACAACTGATGC+CGG | + | chr1_2:20971701-20971720 | Msa0061960:intron | 35.0% | |
| ! | ATTTTGCATCATCTTGCTTC+AGG | + | chr1_2:20972065-20972084 | Msa0061960:intron | 35.0% |
| TAAAGTTCTATGACCTATGC+TGG | + | chr1_2:20972346-20972365 | Msa0061960:intron | 35.0% | |
| TATAACAATAGCTCCAGCAT+AGG | - | chr1_2:20972362-20972381 | None:intergenic | 35.0% | |
| TTTGGCATGTTATTAAGGTG+TGG | + | chr1_2:20972388-20972407 | Msa0061960:intron | 35.0% | |
| !! | GTTATTAAGGTGTGGTTTTG+GGG | + | chr1_2:20972396-20972415 | Msa0061960:intron | 35.0% |
| GGAAAAAGAGGATGACAAAA+AGG | - | chr1_2:20972536-20972555 | None:intergenic | 35.0% | |
| GACAAGATCTAAGGAAAAAG+AGG | - | chr1_2:20972548-20972567 | None:intergenic | 35.0% | |
| AAATCACAGGACAAGATCTA+AGG | - | chr1_2:20972557-20972576 | None:intergenic | 35.0% | |
| TCTTGCCAAATCTATAGCTT+GGG | + | chr1_2:20972667-20972686 | Msa0061960:CDS | 35.0% | |
| TGAATTGATTAGTGAAAGCG+TGG | + | chr1_2:20973147-20973166 | Msa0061960:intron | 35.0% | |
| ! | GAATTGATTAGTGAAAGCGT+GGG | + | chr1_2:20973148-20973167 | Msa0061960:intron | 35.0% |
| TGCATCATCTTCACTTGTAA+AGG | + | chr1_2:20973282-20973301 | Msa0061960:intron | 35.0% | |
| TTGTGTTAGAAGATAGGACT+TGG | - | chr1_2:20973347-20973366 | None:intergenic | 35.0% | |
| CTTCTAACACAATGATCATC+AGG | + | chr1_2:20973355-20973374 | Msa0061960:intron | 35.0% | |
| ! | GTTCCACCCTAAGTAAATTT+TGG | - | chr1_2:20973454-20973473 | None:intergenic | 35.0% |
| AAATTTACTTAGGGTGGAAC+TGG | + | chr1_2:20973454-20973473 | Msa0061960:CDS | 35.0% | |
| AATTTACTTAGGGTGGAACT+GGG | + | chr1_2:20973455-20973474 | Msa0061960:CDS | 35.0% | |
| ! | ATACTTTGCTAATGGATGGT+GGG | + | chr1_2:20973480-20973499 | Msa0061960:CDS | 35.0% |
| !! | TGTTAGTGTCAGACTTGTTA+AGG | - | chr1_2:20973648-20973667 | None:intergenic | 35.0% |
| TGACATAGACTATGCTCTTT+GGG | - | chr1_2:20973998-20974017 | None:intergenic | 35.0% | |
| ATGACATAGACTATGCTCTT+TGG | - | chr1_2:20973999-20974018 | None:intergenic | 35.0% | |
| TGTTGATCCATCTAACTATC+CGG | + | chr1_2:20974116-20974135 | Msa0061960:intron | 35.0% | |
| AACCTAAGCTGTATGAATAG+AGG | - | chr1_2:20974181-20974200 | None:intergenic | 35.0% | |
| CACAATATTGGTGCAAGTAA+TGG | - | chr1_2:20974207-20974226 | None:intergenic | 35.0% | |
| TAAAGTTTACGAACTGTTGC+AGG | + | chr1_2:20974370-20974389 | Msa0061960:intron | 35.0% | |
| AAAGTTTACGAACTGTTGCA+GGG | + | chr1_2:20974371-20974390 | Msa0061960:intron | 35.0% | |
| GATTAACACGGGATACAAAA+TGG | - | chr1_2:20974843-20974862 | None:intergenic | 35.0% | |
| !! | AAAAGGGTTGGTGATTAACA+CGG | - | chr1_2:20974855-20974874 | None:intergenic | 35.0% |
| ACAAGACAAATGAAAAGGGT+TGG | - | chr1_2:20974867-20974886 | None:intergenic | 35.0% | |
| GCACACAAGACAAATGAAAA+GGG | - | chr1_2:20974871-20974890 | None:intergenic | 35.0% | |
| TGCACACAAGACAAATGAAA+AGG | - | chr1_2:20974872-20974891 | None:intergenic | 35.0% | |
| ATAAGCAGTTATTAAGCGCA+CGG | + | chr1_2:20974893-20974912 | Msa0061960:three_prime_UTR | 35.0% | |
| AGCTTCTAACAATGCCATAT+TGG | - | chr1_2:20974937-20974956 | None:intergenic | 35.0% | |
| GTTAGAAGCTACTGAAAATC+TGG | + | chr1_2:20974947-20974966 | Msa0061960:three_prime_UTR | 35.0% | |
| CCTATCTCCTTTAGATAACA+AGG | - | chr1_2:20975105-20975124 | None:intergenic | 35.0% | |
| ! | CCTTGTTATCTAAAGGAGAT+AGG | + | chr1_2:20975102-20975121 | Msa0061960:three_prime_UTR | 35.0% |
| CTAAAGGAGATAGGATCAAA+TGG | + | chr1_2:20975111-20975130 | Msa0061960:three_prime_UTR | 35.0% | |
| !! | CCAAGTTTAATTTGACACCA+AGG | - | chr1_2:20975139-20975158 | None:intergenic | 35.0% |
| !! | CCTTGGTGTCAAATTAAACT+TGG | + | chr1_2:20975136-20975155 | Msa0061960:three_prime_UTR | 35.0% |
| !! | TTCTTGGGTATTGGTTAGGT+TGG | + | chr1_2:20971529-20971548 | Msa0061960:five_prime_UTR | 40.0% |
| !! | TGGTTAGGTTGGAAGAACTA+AGG | + | chr1_2:20971540-20971559 | Msa0061960:five_prime_UTR | 40.0% |
| GGAAGAACTAAGGTCAGAAT+TGG | + | chr1_2:20971550-20971569 | Msa0061960:five_prime_UTR | 40.0% | |
| AGAACTAAGGTCAGAATTGG+GGG | + | chr1_2:20971553-20971572 | Msa0061960:five_prime_UTR | 40.0% | |
| TGGAATGATCCACCCAAATA+TGG | + | chr1_2:20971591-20971610 | Msa0061960:CDS | 40.0% | |
| TCTCTAACTAAATCCACGCT+AGG | + | chr1_2:20971682-20971701 | Msa0061960:intron | 40.0% | |
| ! | TCAGTTGTTATTACCTAGCG+TGG | - | chr1_2:20971698-20971717 | None:intergenic | 40.0% |
| AGGTAATAACAACTGATGCC+GGG | + | chr1_2:20971702-20971721 | Msa0061960:intron | 40.0% | |
| TTCAGTTAATGGCATAGTGG+TGG | + | chr1_2:20971825-20971844 | Msa0061960:intron | 40.0% | |
| ATCATCTTGCTTCAGGTAGA+TGG | + | chr1_2:20972072-20972091 | Msa0061960:intron | 40.0% | |
| TCATGTCTCAACGAAATCAC+AGG | - | chr1_2:20972570-20972589 | None:intergenic | 40.0% | |
| GTCTTGCCAAATCTATAGCT+TGG | + | chr1_2:20972666-20972685 | Msa0061960:CDS | 40.0% | |
| TCCATCCCAAGCTATAGATT+TGG | - | chr1_2:20972675-20972694 | None:intergenic | 40.0% | |
| TACAAAGTGAAGACGGAGTT+TGG | - | chr1_2:20973205-20973224 | None:intergenic | 40.0% | |
| AAACTCCGTCTTCACTTTGT+AGG | + | chr1_2:20973204-20973223 | Msa0061960:intron | 40.0% | |
| ACTGACCTACAAAGTGAAGA+CGG | - | chr1_2:20973212-20973231 | None:intergenic | 40.0% | |
| TATATGGTAGAGACCCCAAT+TGG | + | chr1_2:20973384-20973403 | Msa0061960:CDS | 40.0% | |
| ATATGGTAGAGACCCCAATT+GGG | + | chr1_2:20973385-20973404 | Msa0061960:CDS | 40.0% | |
| ATTTACTTAGGGTGGAACTG+GGG | + | chr1_2:20973456-20973475 | Msa0061960:CDS | 40.0% | |
| ! | GATACTTTGCTAATGGATGG+TGG | + | chr1_2:20973479-20973498 | Msa0061960:CDS | 40.0% |
| ! | TACTTTGCTAATGGATGGTG+GGG | + | chr1_2:20973481-20973500 | Msa0061960:CDS | 40.0% |
| GACATAGACTATGCTCTTTG+GGG | - | chr1_2:20973997-20974016 | None:intergenic | 40.0% | |
| CATACTACCGGATAGTTAGA+TGG | - | chr1_2:20974126-20974145 | None:intergenic | 40.0% | |
| CATCTAACTATCCGGTAGTA+TGG | + | chr1_2:20974124-20974143 | Msa0061960:intron | 40.0% | |
| GTCCTCTATTCATACAGCTT+AGG | + | chr1_2:20974176-20974195 | Msa0061960:intron | 40.0% | |
| ! | TTGTCTAATGAATTGGTGGC+TGG | + | chr1_2:20974249-20974268 | Msa0061960:intron | 40.0% |
| GATAGACGGACAATAGCATA+AGG | - | chr1_2:20974343-20974362 | None:intergenic | 40.0% | |
| AAGTTTACGAACTGTTGCAG+GGG | + | chr1_2:20974372-20974391 | Msa0061960:intron | 40.0% | |
| GGCTAGTAGTTATCTGAGAA+AGG | + | chr1_2:20974398-20974417 | Msa0061960:CDS | 40.0% | |
| AGTAGTTATCTGAGAAAGGC+TGG | + | chr1_2:20974402-20974421 | Msa0061960:CDS | 40.0% | |
| GTAGTTATCTGAGAAAGGCT+GGG | + | chr1_2:20974403-20974422 | Msa0061960:CDS | 40.0% | |
| TAGTTATCTGAGAAAGGCTG+GGG | + | chr1_2:20974404-20974423 | Msa0061960:CDS | 40.0% | |
| ! | GTTTTCCTACTAACAGGCAA+TGG | + | chr1_2:20974586-20974605 | Msa0061960:intron | 40.0% |
| CAGTACGCGTCATATTCATT+TGG | - | chr1_2:20974688-20974707 | None:intergenic | 40.0% | |
| !! | AAAGGGTTGGTGATTAACAC+GGG | - | chr1_2:20974854-20974873 | None:intergenic | 40.0% |
| ATATCGTACACGTGCCAATA+TGG | + | chr1_2:20974920-20974939 | Msa0061960:three_prime_UTR | 40.0% | |
| GAAGCTACTGAAAATCTGGT+TGG | + | chr1_2:20974951-20974970 | Msa0061960:three_prime_UTR | 40.0% | |
| TAAGGTCAGAATTGGGGGAA+TGG | + | chr1_2:20971558-20971577 | Msa0061960:exon | 45.0% | |
| AGAATTGGGGGAATGGCAAA+AGG | + | chr1_2:20971565-20971584 | Msa0061960:exon | 45.0% | |
| CGAGCATGGTAGCCATATTT+GGG | - | chr1_2:20971606-20971625 | None:intergenic | 45.0% | |
| CCAAATATGGCTACCATGCT+CGG | + | chr1_2:20971604-20971623 | Msa0061960:CDS | 45.0% | |
| CAAATATGGCTACCATGCTC+GGG | + | chr1_2:20971605-20971624 | Msa0061960:CDS | 45.0% | |
| AAATATGGCTACCATGCTCG+GGG | + | chr1_2:20971606-20971625 | Msa0061960:CDS | 45.0% | |
| GGTAATAACAACTGATGCCG+GGG | + | chr1_2:20971703-20971722 | Msa0061960:intron | 45.0% | |
| CATCTTTCTCCAAACGTCAC+TGG | - | chr1_2:20971732-20971751 | None:intergenic | 45.0% | |
| CAGTGACGTTTGGAGAAAGA+TGG | + | chr1_2:20971730-20971749 | Msa0061960:CDS | 45.0% | |
| CGTTTGGAGAAAGATGGTTC+AGG | + | chr1_2:20971736-20971755 | Msa0061960:CDS | 45.0% | |
| CATCACATTGCACAAGCGAA+TGG | - | chr1_2:20971988-20972007 | None:intergenic | 45.0% | |
| ACTGTTATTGCTTTGGCCAG+TGG | + | chr1_2:20972114-20972133 | Msa0061960:CDS | 45.0% | |
| CTGTTATTGCTTTGGCCAGT+GGG | + | chr1_2:20972115-20972134 | Msa0061960:CDS | 45.0% | |
| TTCTTCTCTAGACAGCGATG+AGG | + | chr1_2:20972158-20972177 | Msa0061960:CDS | 45.0% | |
| CGATGAGGCAATTCAACTTC+AGG | + | chr1_2:20972173-20972192 | Msa0061960:CDS | 45.0% | |
| AAAAGCTCACAACTGCATGC+TGG | - | chr1_2:20972422-20972441 | None:intergenic | 45.0% | |
| TGTCCTTTCCAGGTAATGCA+AGG | + | chr1_2:20972644-20972663 | Msa0061960:intron | 45.0% | |
| AGACCTTGCATTACCTGGAA+AGG | - | chr1_2:20972650-20972669 | None:intergenic | 45.0% | |
| GCCAAATCTATAGCTTGGGA+TGG | + | chr1_2:20972671-20972690 | Msa0061960:CDS | 45.0% | |
| TCTATAGCTTGGGATGGAGA+AGG | + | chr1_2:20972677-20972696 | Msa0061960:CDS | 45.0% | |
| ACGTGGAGGATTACTATTGC+AGG | - | chr1_2:20972734-20972753 | None:intergenic | 45.0% | |
| TAGTAATCCTCCACGTTCCT+TGG | + | chr1_2:20972738-20972757 | Msa0061960:intron | 45.0% | |
| AGTAATCCTCCACGTTCCTT+GGG | + | chr1_2:20972739-20972758 | Msa0061960:intron | 45.0% | |
| ACTTTGTAGGTCAGTGTGAC+TGG | + | chr1_2:20973217-20973236 | Msa0061960:intron | 45.0% | |
| TGTGACTGGTGCAAATAGTG+AGG | + | chr1_2:20973231-20973250 | Msa0061960:CDS | 45.0% | |
| GATCATCAGGCTGCTGTATA+TGG | + | chr1_2:20973368-20973387 | Msa0061960:intron | 45.0% | |
| TATGGTAGAGACCCCAATTG+GGG | + | chr1_2:20973386-20973405 | Msa0061960:CDS | 45.0% | |
| TTTACTTAGGGTGGAACTGG+GGG | + | chr1_2:20973457-20973476 | Msa0061960:CDS | 45.0% | |
| ACTGGGGGATACTTTGCTAA+TGG | + | chr1_2:20973472-20973491 | Msa0061960:CDS | 45.0% | |
| GGGGATACTTTGCTAATGGA+TGG | + | chr1_2:20973476-20973495 | Msa0061960:CDS | 45.0% | |
| TCTTACCGGTCAAACGATTG+TGG | - | chr1_2:20973509-20973528 | None:intergenic | 45.0% | |
| CAGTTATTGATGCTGGGGAA+CGG | + | chr1_2:20973702-20973721 | Msa0061960:intron | 45.0% | |
| TGTATGATCAGGCGACTGTT+AGG | - | chr1_2:20974093-20974112 | None:intergenic | 45.0% | |
| AGGGAAAACCAGTGAACTGT+GGG | - | chr1_2:20974478-20974497 | None:intergenic | 45.0% | |
| GATAGGATCAAATGGCACCT+TGG | + | chr1_2:20975119-20975138 | Msa0061960:three_prime_UTR | 45.0% | |
| GCATGGTAGCCATATTTGGG+TGG | - | chr1_2:20971603-20971622 | None:intergenic | 50.0% | |
| CCGAGCATGGTAGCCATATT+TGG | - | chr1_2:20971607-20971626 | None:intergenic | 50.0% | |
| AGTAAGACATACCCCGAGCA+TGG | - | chr1_2:20971620-20971639 | None:intergenic | 50.0% | |
| ACTTCAGGCATGCCTAGATG+CGG | + | chr1_2:20972188-20972207 | Msa0061960:CDS | 50.0% | |
| GGGTTGACATTACCGCATCT+AGG | - | chr1_2:20972203-20972222 | None:intergenic | 50.0% | |
| TGGCAAGACCTTGCATTACC+TGG | - | chr1_2:20972655-20972674 | None:intergenic | 50.0% | |
| TCAGTCATGATTCGTGCCCA+AGG | - | chr1_2:20972758-20972777 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTCTG+TGG | + | chr1_2:20973050-20973069 | Msa0061960:intron | 50.0% | |
| TAGTGAGGCTGAAGCTGCAA+AGG | + | chr1_2:20973246-20973265 | Msa0061960:CDS | 50.0% | |
| GGGAACCACAATCGTTTGAC+CGG | + | chr1_2:20973501-20973520 | Msa0061960:CDS | 50.0% | |
| GTCTGTAACCCACAGTTCAC+TGG | + | chr1_2:20974467-20974486 | Msa0061960:intron | 50.0% | |
| GAGGGAAAACCAGTGAACTG+TGG | - | chr1_2:20974479-20974498 | None:intergenic | 50.0% | |
| CCTACTAACAGGCAATGGAC+CGG | + | chr1_2:20974591-20974610 | Msa0061960:intron | 50.0% | |
| CTACTAACAGGCAATGGACC+GGG | + | chr1_2:20974592-20974611 | Msa0061960:intron | 50.0% | |
| AACAGAAACGCCCCTAGTGA+AGG | - | chr1_2:20974817-20974836 | None:intergenic | 50.0% | |
| TATCTGTGCTCACTGCACCT+AGG | + | chr1_2:20975026-20975045 | Msa0061960:three_prime_UTR | 50.0% | |
| GGGGGAATGGCAAAAGGTTC+TGG | + | chr1_2:20971571-20971590 | Msa0061960:exon | 55.0% | |
| ! | CCAAACGTCACTGGTTACCC+CGG | - | chr1_2:20971723-20971742 | None:intergenic | 55.0% |
| TGATTCGTGCCCAAGGAACG+TGG | - | chr1_2:20972751-20972770 | None:intergenic | 55.0% | |
| CAGCAATGCGTCCCCAATTG+GGG | - | chr1_2:20973400-20973419 | None:intergenic | 55.0% | |
| GCAGCAATGCGTCCCCAATT+GGG | - | chr1_2:20973401-20973420 | None:intergenic | 55.0% | |
| AGCAGCAATGCGTCCCCAAT+TGG | - | chr1_2:20973402-20973421 | None:intergenic | 55.0% | |
| TGCTGCTGCAGCTGGTTACT+CGG | + | chr1_2:20973415-20973434 | Msa0061960:CDS | 55.0% | |
| TACGAACTGTTGCAGGGGTG+AGG | + | chr1_2:20974377-20974396 | Msa0061960:intron | 55.0% | |
| AGAAAGGCTGGGGAGACTCA+CGG | + | chr1_2:20974414-20974433 | Msa0061960:CDS | 55.0% | |
| CCGGTCCATTGCCTGTTAGT+AGG | - | chr1_2:20974594-20974613 | None:intergenic | 55.0% | |
| GCACCTAGGAATGCTGTCAG+AGG | + | chr1_2:20975040-20975059 | Msa0061960:three_prime_UTR | 55.0% | |
| CTGCCTCTGACAGCATTCCT+AGG | - | chr1_2:20975046-20975065 | None:intergenic | 55.0% | |
| AGGAATGCTGTCAGAGGCAG+AGG | + | chr1_2:20975046-20975065 | Msa0061960:three_prime_UTR | 55.0% | |
| CCGGGGTAACCAGTGACGTT+TGG | + | chr1_2:20971720-20971739 | Msa0061960:CDS | 60.0% | |
| !! | CTTTGGCCAGTGGGCTGTCT+GGG | + | chr1_2:20972124-20972143 | Msa0061960:CDS | 60.0% |
| AGGAGCGACGTGCCTCATTG+AGG | + | chr1_2:20972697-20972716 | Msa0061960:CDS | 60.0% | |
| TTCGTGCCCAAGGAACGTGG+AGG | - | chr1_2:20972748-20972767 | None:intergenic | 60.0% | |
| GCTGCTGCAGCTGGTTACTC+GGG | + | chr1_2:20973416-20973435 | Msa0061960:CDS | 60.0% | |
| CTGCTGCAGCTGGTTACTCG+GGG | + | chr1_2:20973417-20973436 | Msa0061960:CDS | 60.0% | |
| TGCTGCAGCTGGTTACTCGG+GGG | + | chr1_2:20973418-20973437 | Msa0061960:CDS | 60.0% | |
| ACCGGGCCATGGACAAGCAT+GGG | + | chr1_2:20974609-20974628 | Msa0061960:CDS | 60.0% | |
| CACAGCCCCATGCTTGTCCA+TGG | - | chr1_2:20974618-20974637 | None:intergenic | 60.0% | |
| !! | GCTTTGGCCAGTGGGCTGTC+TGG | + | chr1_2:20972123-20972142 | Msa0061960:CDS | 65.0% |
| GCTTAGCCCAGACAGCCCAC+TGG | - | chr1_2:20972133-20972152 | None:intergenic | 65.0% | |
| GGACGCATTGCTGCTGCAGC+TGG | + | chr1_2:20973407-20973426 | Msa0061960:CDS | 65.0% | |
| ACAGGCAATGGACCGGGCCA+TGG | + | chr1_2:20974598-20974617 | Msa0061960:intron | 65.0% | |
| GACCGGGCCATGGACAAGCA+TGG | + | chr1_2:20974608-20974627 | Msa0061960:CDS | 65.0% | |
| CCCCATGCTTGTCCATGGCC+CGG | - | chr1_2:20974613-20974632 | None:intergenic | 65.0% | |
| CCGGGCCATGGACAAGCATG+GGG | + | chr1_2:20974610-20974629 | Msa0061960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 20971500 | 20975194 | 20971500 | ID=Msa0061960;Name=Msa0061960 |
| chr1_2 | mRNA | 20971500 | 20975194 | 20971500 | ID=Msa0061960-mRNA-1;Parent=Msa0061960;Name=Msa0061960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=77|0.85|0.75|1|1|1|8|510|231 |
| chr1_2 | exon | 20971500 | 20971627 | 20971500 | ID=Msa0061960-mRNA-1:exon:7816;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20971704 | 20971790 | 20971704 | ID=Msa0061960-mRNA-1:exon:7817;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20972087 | 20972209 | 20972087 | ID=Msa0061960-mRNA-1:exon:7818;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20972656 | 20972718 | 20972656 | ID=Msa0061960-mRNA-1:exon:7819;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20973226 | 20973297 | 20973226 | ID=Msa0061960-mRNA-1:exon:7820;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20973377 | 20973522 | 20973377 | ID=Msa0061960-mRNA-1:exon:7821;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20974392 | 20974462 | 20974392 | ID=Msa0061960-mRNA-1:exon:7822;Parent=Msa0061960-mRNA-1 |
| chr1_2 | exon | 20974602 | 20975194 | 20974602 | ID=Msa0061960-mRNA-1:exon:7823;Parent=Msa0061960-mRNA-1 |
| chr1_2 | five_prime_UTR | 20971500 | 20971576 | 20971500 | ID=Msa0061960-mRNA-1:five_prime_utr;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20971577 | 20971627 | 20971577 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20971704 | 20971790 | 20971704 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20972087 | 20972209 | 20972087 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20972656 | 20972718 | 20972656 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20973226 | 20973297 | 20973226 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20973377 | 20973522 | 20973377 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20974392 | 20974462 | 20974392 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | CDS | 20974602 | 20974684 | 20974602 | ID=Msa0061960-mRNA-1:cds;Parent=Msa0061960-mRNA-1 |
| chr1_2 | three_prime_UTR | 20974685 | 20975194 | 20974685 | ID=Msa0061960-mRNA-1:three_prime_utr;Parent=Msa0061960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
