Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122620 | XP_013468329.1 | 98.936 | 470 | 2 | 2 | 1 | 467 | 1 | 470 | 0.0 | 938 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122620 | sp|B9SZB6|ARGJ_RICCO | 75.693 | 469 | 112 | 1 | 1 | 467 | 1 | 469 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122620 | A0A072VLB2 | 98.936 | 470 | 2 | 2 | 1 | 467 | 1 | 470 | 0.0 | 938 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029710 | Msa0122620 | 0.801527 | 8.632764e-49 | -8.615850e-47 |
| Msa0061960 | Msa0122620 | 0.810356 | 1.200592e-50 | -8.615850e-47 |
| Msa0122620 | Msa0122630 | 0.909092 | 8.339254e-82 | -8.615850e-47 |
| Msa0122620 | Msa0463210 | 0.808615 | 2.838390e-50 | -8.615850e-47 |
| Msa0122620 | Msa1459380 | 0.802159 | 6.404645e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122620 | MtrunA17_Chr1g0182411 | 98.936 | 470 | 2 | 2 | 1 | 467 | 1 | 470 | 0.0 | 938 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0122620 | AT2G37500.1 | 74.153 | 472 | 113 | 6 | 1 | 467 | 1 | 468 | 0.0 | 679 |
| Msa0122620 | AT2G37500.2 | 77.451 | 408 | 90 | 1 | 62 | 467 | 2 | 409 | 0.0 | 632 |
Find 193 sgRNAs with CRISPR-Local
Find 622 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATACCTTTGACTTTGAATT+TGG | 0.071455 | 1_3:+49417609 | None:intergenic |
| CCGAGCATGGTAGCCATATT+TGG | 0.195244 | 1_3:+49413799 | None:intergenic |
| GTTCCACCCTAAGTAAATTT+TGG | 0.210785 | 1_3:+49411999 | None:intergenic |
| CATTTCTCAGACTGTGTTCT+AGG | 0.216875 | 1_3:+49417686 | None:intergenic |
| AGGACCTTGGGGAAGGAAAA+TGG | 0.263937 | 1_3:+49417436 | None:intergenic |
| ATTGAATCCACTGGTGTAAT+TGG | 0.272665 | 1_3:-49414987 | Msa0122620:CDS |
| CAGAATAACTTACATAACTA+TGG | 0.288580 | 1_3:+49410692 | None:intergenic |
| TTCAAAGCTGCGGGAATATA+TGG | 0.302267 | 1_3:-49415763 | Msa0122620:CDS |
| GATTCAATTAATACTTCTTC+AGG | 0.303405 | 1_3:+49415002 | None:intergenic |
| ATACCTTTGACTTTGAATTT+GGG | 0.303599 | 1_3:+49417610 | None:intergenic |
| GCTTTGGCCAGTGGGCTGTC+TGG | 0.306110 | 1_3:-49413280 | Msa0122620:CDS |
| CCTTGTTATCTAAAGGAAAT+AGG | 0.311411 | 1_3:-49410346 | Msa0122620:three_prime_UTR |
| AAATTTACTTAGGGTGGAAC+TGG | 0.318789 | 1_3:-49411996 | Msa0122620:CDS |
| ATTGACTTAAATAGATGAAT+AGG | 0.319503 | 1_3:+49410280 | None:intergenic |
| GTTAGAATTCAGATATCTAT+TGG | 0.326828 | 1_3:-49411007 | Msa0122620:intron |
| GATTAACACGGGATACAAAA+TGG | 0.327893 | 1_3:+49410608 | None:intergenic |
| GTTAGAAGCTACTGAAAATC+TGG | 0.327906 | 1_3:-49410501 | Msa0122620:three_prime_UTR |
| TGCTGCTGCAGCTGGTTACT+CGG | 0.329195 | 1_3:-49412035 | Msa0122620:CDS |
| AGCAGCAATGCGTCCCCAAT+TGG | 0.330422 | 1_3:+49412051 | None:intergenic |
| GATCATCAGGCTGCTGTATA+TGG | 0.333048 | 1_3:-49412082 | Msa0122620:intron |
| AACTGGCTGAAACTCGCGTT+TGG | 0.341506 | 1_3:-49420361 | Msa0122620:five_prime_UTR |
| TGTAGCAGCTCCGCACTAAA+TGG | 0.343489 | 1_3:+49417785 | None:intergenic |
| GAGTGTGGCAATTGAGTCTT+TGG | 0.352539 | 1_3:-49414416 | Msa0122620:intron |
| TGAAATAACATACAGTTATC+TGG | 0.352882 | 1_3:+49413622 | None:intergenic |
| TACAGTATGTTCTAGAGGTC+AGG | 0.353089 | 1_3:+49420426 | None:intergenic |
| CAATGATACTGTTATTGCTT+TGG | 0.355377 | 1_3:-49413296 | Msa0122620:CDS |
| GCAGCAATGCGTCCCCAATT+GGG | 0.356206 | 1_3:+49412052 | None:intergenic |
| TTAAATAGATGAATAGGATT+TGG | 0.360658 | 1_3:+49410286 | None:intergenic |
| AAGTTGTTGAGAAGTGAAAA+TGG | 0.365741 | 1_3:+49417634 | None:intergenic |
| ATTCTGAAATCAGTTCATAA+AGG | 0.366195 | 1_3:-49410675 | Msa0122620:three_prime_UTR |
| TCCATCCCAAGCTATAGATT+TGG | 0.369474 | 1_3:+49412731 | None:intergenic |
| GACCTGCTTCCAAGGACCTT+GGG | 0.370325 | 1_3:+49417424 | None:intergenic |
| ATCATCTTGCTTCAGGTAGA+TGG | 0.372651 | 1_3:-49413331 | Msa0122620:intron |
| TGGAATGATCCACCCAAATA+TGG | 0.374514 | 1_3:-49413812 | Msa0122620:CDS |
| TTCTGAAATCAGTTCATAAA+GGG | 0.381243 | 1_3:-49410674 | Msa0122620:three_prime_UTR |
| ATATCGTACACGTGCCAATA+TGG | 0.385844 | 1_3:-49410528 | Msa0122620:three_prime_UTR |
| CTTTGGCCAGTGGGCTGTCT+GGG | 0.389273 | 1_3:-49413279 | Msa0122620:CDS |
| ACTGGCTGAAACTCGCGTTT+GGG | 0.390085 | 1_3:-49420360 | Msa0122620:five_prime_UTR |
| AGCTTCTAACAATGCCATAT+TGG | 0.391576 | 1_3:+49410514 | None:intergenic |
| CAGTACGCGTCATATTCATT+TGG | 0.392085 | 1_3:+49410763 | None:intergenic |
| AGAGGTCAGGGAAGCAAGAT+TGG | 0.396326 | 1_3:+49420439 | None:intergenic |
| GGAAGAACTAAGGTCAGAAT+TGG | 0.397818 | 1_3:-49413853 | Msa0122620:CDS |
| CTGTTATTGCTTTGGCCAGT+GGG | 0.403150 | 1_3:-49413288 | Msa0122620:CDS |
| CCTTGGTGTCAAATTAAACT+TGG | 0.405781 | 1_3:-49410312 | Msa0122620:three_prime_UTR |
| TGTGAGCTTAAGTGTATGTT+TGG | 0.406973 | 1_3:+49420321 | None:intergenic |
| CGATGAGGCAATTCAACTTC+AGG | 0.407353 | 1_3:-49413230 | Msa0122620:CDS |
| TCTATTTAAGTCAATCTAAA+GGG | 0.413724 | 1_3:-49410272 | None:intergenic |
| GAAGAACTAAGGTCAGAATT+GGG | 0.413959 | 1_3:-49413852 | Msa0122620:CDS |
| GGACGCATTGCTGCTGCAGC+TGG | 0.415749 | 1_3:-49412043 | Msa0122620:CDS |
| ACTTTGTAGGTCAGTGTGAC+TGG | 0.416559 | 1_3:-49412233 | Msa0122620:intron |
| CAAAGCAATAACAGTATCAT+TGG | 0.422503 | 1_3:+49413297 | None:intergenic |
| CCAAATATGGCTACCATGCT+CGG | 0.423756 | 1_3:-49413799 | Msa0122620:CDS |
| ACAAGCTGTAGGCTAGGAAA+TGG | 0.426810 | 1_3:-49417817 | Msa0122620:five_prime_UTR |
| ATCTATTTAAGTCAATCTAA+AGG | 0.427969 | 1_3:-49410273 | None:intergenic |
| AGTTAGTGAATTCACTAGTA+AGG | 0.428403 | 1_3:+49414759 | None:intergenic |
| CGAGCATGGTAGCCATATTT+GGG | 0.434166 | 1_3:+49413800 | None:intergenic |
| TCTTATCTCCAGGGTGAAGC+AGG | 0.434230 | 1_3:-49415176 | Msa0122620:intron |
| CCGGGGTAACCAGTGACGTT+TGG | 0.436852 | 1_3:-49413683 | Msa0122620:CDS |
| GCTGCTGCAGCTGGTTACTC+GGG | 0.438224 | 1_3:-49412034 | Msa0122620:CDS |
| TGAAAGCTAACCTGCAGATA+TGG | 0.439584 | 1_3:+49415681 | None:intergenic |
| TATATGGTAGAGACCCCAAT+TGG | 0.443479 | 1_3:-49412066 | Msa0122620:CDS |
| CGTTTGGAGAAAGATGGTTC+AGG | 0.445690 | 1_3:-49413667 | Msa0122620:CDS |
| TGCACACAAGACAAATGAAA+AGG | 0.451692 | 1_3:+49410579 | None:intergenic |
| CTAAAGGAAATAGGATCAAA+TGG | 0.453682 | 1_3:-49410337 | Msa0122620:three_prime_UTR |
| AGTAGTTATCTGAGAAAGGC+TGG | 0.454885 | 1_3:-49411046 | Msa0122620:CDS |
| GTCTTGCCAAATCTATAGCT+TGG | 0.456989 | 1_3:-49412737 | Msa0122620:CDS |
| CTCAGACTGTGTTCTAGGGT+TGG | 0.462786 | 1_3:+49417691 | None:intergenic |
| ACAGATACAAATGATGTTCA+AGG | 0.464949 | 1_3:+49410438 | None:intergenic |
| TGGGCGCGAGCGAAAATTGA+AGG | 0.467131 | 1_3:-49420506 | None:intergenic |
| GGACCTTGGGGAAGGAAAAT+GGG | 0.467500 | 1_3:+49417437 | None:intergenic |
| CTGCATCTGACAGCATTCCT+AGG | 0.467923 | 1_3:+49410405 | None:intergenic |
| CAAATATGGCTACCATGCTC+GGG | 0.472267 | 1_3:-49413798 | Msa0122620:CDS |
| TAACCAAAATTTACTTAGGG+TGG | 0.472742 | 1_3:-49412002 | Msa0122620:CDS |
| CCTATTTCCTTTAGATAACA+AGG | 0.474396 | 1_3:+49410346 | None:intergenic |
| CCCCATGCTTGTCCATGGCC+CGG | 0.480206 | 1_3:+49410838 | None:intergenic |
| GGAAGGAAAATGGGAGCAGC+AGG | 0.480592 | 1_3:+49417446 | None:intergenic |
| ACCGGGCCATGGACAAGCAT+GGG | 0.482124 | 1_3:-49410839 | Msa0122620:CDS |
| TCCCCAAGGTCCTTGGAAGC+AGG | 0.489414 | 1_3:-49417426 | Msa0122620:intron |
| TACGAACTGTTGCAGGGGTG+AGG | 0.490264 | 1_3:-49411071 | Msa0122620:intron |
| TGGTTAGGTTGGAAGAACTA+AGG | 0.494399 | 1_3:-49413863 | Msa0122620:intron |
| ATATCAGCCTTGTTATCTAA+AGG | 0.495568 | 1_3:-49410353 | Msa0122620:three_prime_UTR |
| TAGGTAATAACAACTGATGC+CGG | 0.496467 | 1_3:-49413702 | Msa0122620:CDS |
| TAGAAAATGACCTGCTTCCA+AGG | 0.496506 | 1_3:+49417416 | None:intergenic |
| CTCTAGAACATACTGTAGCT+TGG | 0.497378 | 1_3:-49420420 | Msa0122620:five_prime_UTR |
| TGACCTGCTTCCAAGGACCT+TGG | 0.498551 | 1_3:+49417423 | None:intergenic |
| GACCGGGCCATGGACAAGCA+TGG | 0.499609 | 1_3:-49410840 | Msa0122620:CDS |
| CATCTTTCTCCAAACGTCAC+TGG | 0.501222 | 1_3:+49413674 | None:intergenic |
| CATGTGACAAGTGCAAGATC+AGG | 0.502061 | 1_3:+49415715 | None:intergenic |
| AATTTACTTAGGGTGGAACT+GGG | 0.503712 | 1_3:-49411995 | Msa0122620:CDS |
| TCTTGCCAAATCTATAGCTT+GGG | 0.504405 | 1_3:-49412736 | Msa0122620:CDS |
| CTGCTGCAGCTGGTTACTCG+GGG | 0.508457 | 1_3:-49412033 | Msa0122620:CDS |
| CTAGTTAATAAACCTTCACT+AGG | 0.512771 | 1_3:-49410646 | Msa0122620:three_prime_UTR |
| GATACTTTACTAATGGATGG+TGG | 0.513441 | 1_3:-49411971 | Msa0122620:CDS |
| AGGTAATAACAACTGATGCC+GGG | 0.513509 | 1_3:-49413701 | Msa0122620:CDS |
| GAGGTCAGGGAAGCAAGATT+GGG | 0.514827 | 1_3:+49420440 | None:intergenic |
| GGCTAGTAGTTATCTGAGAA+AGG | 0.519391 | 1_3:-49411050 | Msa0122620:CDS |
| GCAGAGGGTTTCAAAGCTGC+GGG | 0.523037 | 1_3:-49415772 | Msa0122620:CDS |
| ATTTCTCAGACTGTGTTCTA+GGG | 0.523947 | 1_3:+49417687 | None:intergenic |
| CCTACTAACAGGCAATGGAC+CGG | 0.525163 | 1_3:-49410857 | Msa0122620:intron |
| ATATGGTAGAGACCCCAATT+GGG | 0.526420 | 1_3:-49412065 | Msa0122620:CDS |
| ACAGGCAATGGACCGGGCCA+TGG | 0.528084 | 1_3:-49410850 | Msa0122620:intron |
| TTCACTAACTTCTTCAGATG+AGG | 0.529205 | 1_3:-49414746 | Msa0122620:CDS |
| TACCTTTGACTTTGAATTTG+GGG | 0.529534 | 1_3:+49417611 | None:intergenic |
| GGGAACCACAATCGTTTGAC+CGG | 0.533492 | 1_3:-49411949 | Msa0122620:intron |
| TACTTTACTAATGGATGGTG+GGG | 0.535018 | 1_3:-49411969 | Msa0122620:CDS |
| GGTGGAGTTACTGCTGCAGA+GGG | 0.537120 | 1_3:-49415787 | Msa0122620:CDS |
| GTTAGTGAATTCACTAGTAA+GGG | 0.537585 | 1_3:+49414760 | None:intergenic |
| GCTTAGCCCAGACAGCCCAC+TGG | 0.537832 | 1_3:+49413273 | None:intergenic |
| ACAGTATGTTCTAGAGGTCA+GGG | 0.538251 | 1_3:+49420427 | None:intergenic |
| GAAGTATTAATTGAATCCAC+TGG | 0.538453 | 1_3:-49414996 | Msa0122620:CDS |
| TGTTCATAATTTCAGCTACT+GGG | 0.539697 | 1_3:-49415032 | Msa0122620:intron |
| CAGTGACGTTTGGAGAAAGA+TGG | 0.539729 | 1_3:-49413673 | Msa0122620:CDS |
| CGTGCTGTGTTAACTAATGC+AGG | 0.543735 | 1_3:-49415407 | Msa0122620:CDS |
| AGGTGGAGTTACTGCTGCAG+AGG | 0.545711 | 1_3:-49415788 | Msa0122620:CDS |
| ACTGTTATTGCTTTGGCCAG+TGG | 0.547196 | 1_3:-49413289 | Msa0122620:CDS |
| GTAGTTATCTGAGAAAGGCT+GGG | 0.548834 | 1_3:-49411045 | Msa0122620:CDS |
| TTCCCCAAATTCAAAGTCAA+AGG | 0.551177 | 1_3:-49417613 | Msa0122620:intron |
| GGGTTGACATTACCGCATCT+AGG | 0.552099 | 1_3:+49413203 | None:intergenic |
| CACAGCCCCATGCTTGTCCA+TGG | 0.552391 | 1_3:+49410833 | None:intergenic |
| ATACTTTACTAATGGATGGT+GGG | 0.553579 | 1_3:-49411970 | Msa0122620:CDS |
| TTTACTTAGGGTGGAACTGG+GGG | 0.556242 | 1_3:-49411993 | Msa0122620:CDS |
| CAGCAATGCGTCCCCAATTG+GGG | 0.558774 | 1_3:+49412053 | None:intergenic |
| TAGTGAGGCTGAAGCTGCAA+AGG | 0.559467 | 1_3:-49412204 | Msa0122620:CDS |
| GCACACAAGACAAATGAAAA+GGG | 0.560279 | 1_3:+49410580 | None:intergenic |
| TCACTAACTTCTTCAGATGA+GGG | 0.560329 | 1_3:-49414745 | Msa0122620:CDS |
| TGCAGAGGGTTTCAAAGCTG+CGG | 0.561008 | 1_3:-49415773 | Msa0122620:CDS |
| CTACTAACAGGCAATGGACC+GGG | 0.561183 | 1_3:-49410856 | Msa0122620:intron |
| CCGGGCCATGGACAAGCATG+GGG | 0.563162 | 1_3:-49410838 | Msa0122620:CDS |
| GGGCGCGAGCGAAAATTGAA+GGG | 0.564041 | 1_3:-49420505 | None:intergenic |
| TATGGAGGGTTGCGCGCTGT+AGG | 0.564441 | 1_3:-49415745 | Msa0122620:CDS |
| AATTGGTCAAAGAATAAAGA+AGG | 0.568321 | 1_3:-49414970 | Msa0122620:intron |
| ACCTGCTTCCAAGGACCTTG+GGG | 0.569998 | 1_3:+49417425 | None:intergenic |
| TAGTTAATAAACCTTCACTA+GGG | 0.573255 | 1_3:-49410645 | Msa0122620:three_prime_UTR |
| CAGGGCAGATTCTGCAGCAG+TGG | 0.576520 | 1_3:-49414467 | Msa0122620:CDS |
| TCTTACCGGTCAAACGATTG+TGG | 0.579423 | 1_3:+49411944 | None:intergenic |
| GCTTCCAAGGACCTTGGGGA+AGG | 0.583623 | 1_3:+49417429 | None:intergenic |
| CTGGCTGAAACTCGCGTTTG+GGG | 0.585042 | 1_3:-49420359 | Msa0122620:five_prime_UTR |
| TGATTGATGACAAGTTGATA+CGG | 0.588339 | 1_3:+49417758 | None:intergenic |
| CCGCGATATGATAGAATGTG+TGG | 0.589545 | 1_3:-49415150 | Msa0122620:CDS |
| AATAGGATCAAATGGCACCT+TGG | 0.590725 | 1_3:-49410329 | Msa0122620:three_prime_UTR |
| ACAAGACAAATGAAAAGGGT+TGG | 0.592319 | 1_3:+49410584 | None:intergenic |
| TCTTTGACCAATTACACCAG+TGG | 0.593128 | 1_3:+49414980 | None:intergenic |
| AACAGAAACGCCCCTAGTGA+AGG | 0.593622 | 1_3:+49410634 | None:intergenic |
| ATTTACTTAGGGTGGAACTG+GGG | 0.594904 | 1_3:-49411994 | Msa0122620:CDS |
| GAAGCTACTGAAAATCTGGT+TGG | 0.596202 | 1_3:-49410497 | Msa0122620:three_prime_UTR |
| AGGGTCATTCACGACTAATG+TGG | 0.596492 | 1_3:-49415592 | Msa0122620:CDS |
| TAGTTATCTGAGAAAGGCTG+GGG | 0.597977 | 1_3:-49411044 | Msa0122620:CDS |
| CACTAACTTCTTCAGATGAG+GGG | 0.598054 | 1_3:-49414744 | Msa0122620:intron |
| TGTCCTTTCCAGGTAATGCA+AGG | 0.600909 | 1_3:-49412759 | Msa0122620:intron |
| AGGAGCGACGTGCCTCATTG+AGG | 0.601458 | 1_3:-49412706 | Msa0122620:intron |
| AGGTCAAGCAAATGCAGCTA+CGG | 0.604603 | 1_3:-49415387 | Msa0122620:intron |
| CAAGCTACAGTATGTTCTAG+AGG | 0.604892 | 1_3:+49420421 | None:intergenic |
| GGGGATACTTTACTAATGGA+TGG | 0.605599 | 1_3:-49411974 | Msa0122620:CDS |
| CCAAACGTCACTGGTTACCC+CGG | 0.608020 | 1_3:+49413683 | None:intergenic |
| TCTGCAGCAGTAACTCCACC+TGG | 0.610983 | 1_3:+49415790 | None:intergenic |
| CCAAGTTTAATTTGACACCA+AGG | 0.611379 | 1_3:+49410312 | None:intergenic |
| AAAGCTGCGGGAATATATGG+AGG | 0.611780 | 1_3:-49415760 | Msa0122620:CDS |
| ATAAGCAGTTATTAAGCGCA+CGG | 0.611956 | 1_3:-49410555 | Msa0122620:three_prime_UTR |
| GCCAAATCTATAGCTTGGGA+TGG | 0.612673 | 1_3:-49412732 | Msa0122620:CDS |
| AAGAACTAAGGTCAGAATTG+GGG | 0.613757 | 1_3:-49413851 | Msa0122620:CDS |
| GATGTTGATGCCATATCTGC+AGG | 0.614029 | 1_3:-49415691 | Msa0122620:intron |
| TCTATAGCTTGGGATGGAGA+AGG | 0.616430 | 1_3:-49412726 | Msa0122620:CDS |
| AAAGGGTTGGTGATTAACAC+GGG | 0.616984 | 1_3:+49410597 | None:intergenic |
| AAACATACACTTAAGCTCAC+AGG | 0.618541 | 1_3:-49420319 | Msa0122620:five_prime_UTR |
| AGTAAGACATACCCCGAGCA+TGG | 0.619941 | 1_3:+49413786 | None:intergenic |
| AGGAATGCTGTCAGATGCAG+AGG | 0.623215 | 1_3:-49410402 | Msa0122620:three_prime_UTR |
| ATGTGTGGAAAGCCTCGCAA+AGG | 0.627850 | 1_3:-49415135 | Msa0122620:intron |
| AAAAGGGTTGGTGATTAACA+CGG | 0.629176 | 1_3:+49410596 | None:intergenic |
| GGCGCGAGCGAAAATTGAAG+GGG | 0.629477 | 1_3:-49420504 | None:intergenic |
| AAATAGTACATACCTTTGCG+AGG | 0.634764 | 1_3:+49415123 | None:intergenic |
| AGAAGCTTGATTCTCCGTAG+TGG | 0.638632 | 1_3:+49417478 | None:intergenic |
| GGTAATAACAACTGATGCCG+GGG | 0.642212 | 1_3:-49413700 | Msa0122620:CDS |
| TATGGTAGAGACCCCAATTG+GGG | 0.642606 | 1_3:-49412064 | Msa0122620:CDS |
| TATCTGTGCTCACTGCACCT+AGG | 0.644776 | 1_3:-49410422 | Msa0122620:three_prime_UTR |
| CTTGCTAACAAGATCTGTTG+TGG | 0.651501 | 1_3:+49414438 | None:intergenic |
| CCACACATTCTATCATATCG+CGG | 0.652423 | 1_3:+49415150 | None:intergenic |
| CGATTATGTCAAAATAAATG+CGG | 0.654467 | 1_3:-49410800 | Msa0122620:CDS |
| TGCTGCAGCTGGTTACTCGG+GGG | 0.654672 | 1_3:-49412032 | Msa0122620:CDS |
| AGAAAGGCTGGGGAGACTCA+CGG | 0.655065 | 1_3:-49411034 | Msa0122620:CDS |
| AGATCTTGTTAGCAAGAGTG+TGG | 0.658285 | 1_3:-49414431 | Msa0122620:CDS |
| TGAACTTCTCAGATTCCAGG+TGG | 0.661236 | 1_3:-49415805 | Msa0122620:intron |
| GATTCACGCTGTATCCACTA+CGG | 0.662779 | 1_3:-49417492 | Msa0122620:CDS |
| GCATGGTAGCCATATTTGGG+TGG | 0.663519 | 1_3:+49413803 | None:intergenic |
| AAGCTGCGGGAATATATGGA+GGG | 0.664937 | 1_3:-49415759 | Msa0122620:CDS |
| AGAACTAAGGTCAGAATTGG+GGG | 0.666774 | 1_3:-49413850 | Msa0122620:CDS |
| ACTTCAGGCATGCCTAGATG+CGG | 0.678693 | 1_3:-49413215 | Msa0122620:intron |
| AGTTAATAAACCTTCACTAG+GGG | 0.680990 | 1_3:-49410644 | Msa0122620:three_prime_UTR |
| AAATATGGCTACCATGCTCG+GGG | 0.688782 | 1_3:-49413797 | Msa0122620:intron |
| AAATGGAGAGAAACGTTGTG+AGG | 0.702976 | 1_3:+49417651 | None:intergenic |
| TTCTTCTCTAGACAGCGATG+AGG | 0.718882 | 1_3:-49413245 | Msa0122620:CDS |
| GTATAAAACAAACCTCAATG+AGG | 0.723765 | 1_3:+49412694 | None:intergenic |
| TGTGACTGGTGCAAATAGTG+AGG | 0.734036 | 1_3:-49412219 | Msa0122620:CDS |
| GCGCGAGCGAAAATTGAAGG+GGG | 0.742254 | 1_3:-49420503 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTTAATATATAATACTA+AGG | - | chr1_3:49410487-49410506 | Msa0122620:three_prime_UTR | 10.0% |
| !!! | ATTATTTTTATACGAAAAAA+TGG | + | chr1_3:49411913-49411932 | None:intergenic | 10.0% |
| !!! | TATTTTGTTTTAGAATTTTT+TGG | - | chr1_3:49413935-49413954 | Msa0122620:intron | 10.0% |
| !! | AAATGACAAATATAAATTTA+CGG | + | chr1_3:49415960-49415979 | None:intergenic | 10.0% |
| !! | TCAACTAATATATATTTATA+TGG | - | chr1_3:49416417-49416436 | Msa0122620:intron | 10.0% |
| !!! | ATTGTATATTTCTATTAAAA+GGG | - | chr1_3:49416839-49416858 | Msa0122620:intron | 10.0% |
| !!! | ACTCAAAAATATATATATTT+TGG | - | chr1_3:49417387-49417406 | Msa0122620:intron | 10.0% |
| !!! | AAAAAAACACATTTTAACAA+GGG | - | chr1_3:49410383-49410402 | Msa0122620:three_prime_UTR | 15.0% |
| !!! | AAGATTTTTTAACTCAAAAA+AGG | + | chr1_3:49410561-49410580 | None:intergenic | 15.0% |
| !!! | TTAAAAAATCTTTCTGAAAA+AGG | - | chr1_3:49410569-49410588 | Msa0122620:three_prime_UTR | 15.0% |
| !! | CATAATTAAAAAATGAGTTA+CGG | + | chr1_3:49410966-49410985 | None:intergenic | 15.0% |
| !!! | TTTGATTTTTTTTGTGAATT+AGG | - | chr1_3:49411636-49411655 | Msa0122620:intron | 15.0% |
| !!! | CTTTTTTACTCTTTATTTTT+TGG | - | chr1_3:49411799-49411818 | Msa0122620:intron | 15.0% |
| !!! | ACAAATTGGTAATATAAATA+AGG | - | chr1_3:49411834-49411853 | Msa0122620:intron | 15.0% |
| !!! | CAAATTGGTAATATAAATAA+GGG | - | chr1_3:49411835-49411854 | Msa0122620:intron | 15.0% |
| !!! | AAATTGGTAATATAAATAAG+GGG | - | chr1_3:49411836-49411855 | Msa0122620:intron | 15.0% |
| !! | TTTAATTCTTCAAAGATAAT+TGG | + | chr1_3:49412172-49412191 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAGCCAATTTA+TGG | + | chr1_3:49412661-49412680 | None:intergenic | 15.0% |
| !!! | TAAATTGGCTTTTTTTTTTA+AGG | - | chr1_3:49412661-49412680 | Msa0122620:intron | 15.0% |
| !!! | TACTATTAAAATTTGCTTTT+AGG | - | chr1_3:49412870-49412889 | Msa0122620:intron | 15.0% |
| !!! | TTTAAGCTTTTATATGTATA+TGG | + | chr1_3:49414537-49414556 | None:intergenic | 15.0% |
| !!! | TACATCACAATTTTAAATTT+TGG | - | chr1_3:49415120-49415139 | Msa0122620:intron | 15.0% |
| !!! | ACATCACAATTTTAAATTTT+GGG | - | chr1_3:49415121-49415140 | Msa0122620:intron | 15.0% |
| !!! | AATTTTATCATTTTATGCAA+TGG | - | chr1_3:49416623-49416642 | Msa0122620:intron | 15.0% |
| !! | ATGTTTACGAAAAAAAAAAA+AGG | - | chr1_3:49416713-49416732 | Msa0122620:intron | 15.0% |
| !!! | CATTGTATATTTCTATTAAA+AGG | - | chr1_3:49416838-49416857 | Msa0122620:intron | 15.0% |
| !!! | TTGTATATTTCTATTAAAAG+GGG | - | chr1_3:49416840-49416859 | Msa0122620:intron | 15.0% |
| !! | ATAATTATGGAAATTGTAAA+GGG | + | chr1_3:49417590-49417609 | None:intergenic | 15.0% |
| !! | AATAATTATGGAAATTGTAA+AGG | + | chr1_3:49417591-49417610 | None:intergenic | 15.0% |
| !! | ATGATATGACAAAATAATTA+TGG | + | chr1_3:49417603-49417622 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTTGCAAGAAA+AGG | + | chr1_3:49417861-49417880 | None:intergenic | 15.0% |
| !! | ATTAACCAAATATAAATACA+AGG | - | chr1_3:49418224-49418243 | Msa0122620:intron | 15.0% |
| !! | TTAAACCTTGTATTTATATT+TGG | + | chr1_3:49418232-49418251 | None:intergenic | 15.0% |
| !!! | AATAATTTTTTGTTTGAATC+TGG | - | chr1_3:49418641-49418660 | Msa0122620:intron | 15.0% |
| !!! | TTTTAACCAAAATTTACTTA+GGG | - | chr1_3:49418765-49418784 | Msa0122620:intron | 15.0% |
| !! | ATTAAAGAATCAATACAATA+AGG | - | chr1_3:49419115-49419134 | Msa0122620:intron | 15.0% |
| !! | AACTTTATTATATAGATAGA+CGG | + | chr1_3:49419679-49419698 | None:intergenic | 15.0% |
| !!! | GAAAAAAACACATTTTAACA+AGG | - | chr1_3:49410382-49410401 | Msa0122620:three_prime_UTR | 20.0% |
| !! | TTTCAATCATAATGTATTAG+TGG | + | chr1_3:49410704-49410723 | None:intergenic | 20.0% |
| !! | ACAATTAAAAAGAATACACA+AGG | - | chr1_3:49410782-49410801 | Msa0122620:exon | 20.0% |
| !! | CATTCTTTACATGTTTATTA+TGG | - | chr1_3:49410883-49410902 | Msa0122620:intron | 20.0% |
| !!! | TACATGTTTATTATGGATTA+TGG | - | chr1_3:49410890-49410909 | Msa0122620:intron | 20.0% |
| !! | TAAAAAAAAAAGCAGTTCAA+AGG | + | chr1_3:49410941-49410960 | None:intergenic | 20.0% |
| !! | AAATATTGAGATCATATTAG+TGG | + | chr1_3:49411017-49411036 | None:intergenic | 20.0% |
| !! | ACAATTCTAATAATACTATG+TGG | - | chr1_3:49411311-49411330 | Msa0122620:intron | 20.0% |
| !!! | ATCCATTTTTCAATATTTCT+TGG | - | chr1_3:49411408-49411427 | Msa0122620:intron | 20.0% |
| !! | TACCAAGAAATATTGAAAAA+TGG | + | chr1_3:49411413-49411432 | None:intergenic | 20.0% |
| !! | TCTATGATATGATAATTGAT+AGG | - | chr1_3:49411503-49411522 | Msa0122620:intron | 20.0% |
| !! | CTATGATATGATAATTGATA+GGG | - | chr1_3:49411504-49411523 | Msa0122620:intron | 20.0% |
| !! | GGCTATTAATTAATACAAAT+TGG | - | chr1_3:49411820-49411839 | Msa0122620:intron | 20.0% |
| !! | TTTATCTCTATCATTATACT+TGG | + | chr1_3:49411951-49411970 | None:intergenic | 20.0% |
| !!! | TCTCTATATATTGTTTTTAG+AGG | + | chr1_3:49412033-49412052 | None:intergenic | 20.0% |
| !! | CTAAAAACAATATATAGAGA+AGG | - | chr1_3:49412033-49412052 | Msa0122620:CDS | 20.0% |
| !!! | TTTTTTTTTTTCAATAGTGG+AGG | + | chr1_3:49412225-49412244 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTCAATAG+TGG | + | chr1_3:49412228-49412247 | None:intergenic | 20.0% |
| !! | CCACTATTGAAAAAAAAAAA+AGG | - | chr1_3:49412225-49412244 | Msa0122620:CDS | 20.0% |
| !! | GAAAAAAAAAAAAGGAACTT+CGG | - | chr1_3:49412233-49412252 | Msa0122620:intron | 20.0% |
| !!! | ATTTATTTTATGTGGACATA+TGG | + | chr1_3:49412340-49412359 | None:intergenic | 20.0% |
| !! | ATCAAATTGTCAGAAAATTT+AGG | - | chr1_3:49412378-49412397 | Msa0122620:intron | 20.0% |
| !! | TTTAATCTTCTTATCATGTT+AGG | + | chr1_3:49412414-49412433 | None:intergenic | 20.0% |
| !!! | TAATGAATGGAACTTTTTTT+TGG | + | chr1_3:49412450-49412469 | None:intergenic | 20.0% |
| !! | ATGCATATATAAGATAAGTT+GGG | + | chr1_3:49412523-49412542 | None:intergenic | 20.0% |
| !! | AAACACAAAAAATAAGGAAA+AGG | + | chr1_3:49412621-49412640 | None:intergenic | 20.0% |
| !!! | TTTTCCTTATTTTTTGTGTT+TGG | - | chr1_3:49412620-49412639 | Msa0122620:intron | 20.0% |
| !!! | TTTCCTTATTTTTTGTGTTT+GGG | - | chr1_3:49412621-49412640 | Msa0122620:intron | 20.0% |
| !! | AAAACATATCAACCAATTTA+CGG | + | chr1_3:49412692-49412711 | None:intergenic | 20.0% |
| !! | TTATACACTACATATTGTAT+AGG | + | chr1_3:49413666-49413685 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTCTTTCACTATT+TGG | + | chr1_3:49414671-49414690 | None:intergenic | 20.0% |
| !!! | AATTTAAAATTGTGATGTAC+AGG | + | chr1_3:49415119-49415138 | None:intergenic | 20.0% |
| !!! | AATTATGAACATTTCTAGTA+AGG | + | chr1_3:49415729-49415748 | None:intergenic | 20.0% |
| !!! | ATATTTGTCATTTTGTTTTC+AGG | - | chr1_3:49415967-49415986 | Msa0122620:intron | 20.0% |
| !!! | TATTTGTCATTTTGTTTTCA+GGG | - | chr1_3:49415968-49415987 | Msa0122620:intron | 20.0% |
| !! | CAATAAATAAGAAACTAAAC+TGG | + | chr1_3:49416196-49416215 | None:intergenic | 20.0% |
| !!! | TGAAAAGTAGAAAAAAGTTT+TGG | + | chr1_3:49416237-49416256 | None:intergenic | 20.0% |
| !!! | TTTTTCTACTTTTCAATCTT+CGG | - | chr1_3:49416242-49416261 | Msa0122620:intron | 20.0% |
| !! | ATATATAAACACACTTTGTA+TGG | - | chr1_3:49416457-49416476 | Msa0122620:intron | 20.0% |
| !! | GGATAAATAATAAAATGCAA+TGG | - | chr1_3:49416500-49416519 | Msa0122620:intron | 20.0% |
| !! | TATTTAACTACCAAAACTAT+GGG | + | chr1_3:49416792-49416811 | None:intergenic | 20.0% |
| !! | TTATTTAACTACCAAAACTA+TGG | + | chr1_3:49416793-49416812 | None:intergenic | 20.0% |
| !!! | CTTTTTGAATGTTAAAATAG+TGG | - | chr1_3:49417804-49417823 | Msa0122620:five_prime_UTR | 20.0% |
| !! | TAACAAAAATCTGAATAGAT+GGG | + | chr1_3:49418204-49418223 | None:intergenic | 20.0% |
| !! | TTAACAAAAATCTGAATAGA+TGG | + | chr1_3:49418205-49418224 | None:intergenic | 20.0% |
| !! | ACAGTTATATTGTGTATAAA+TGG | - | chr1_3:49418423-49418442 | Msa0122620:intron | 20.0% |
| !!! | CTTTTAACCAAAATTTACTT+AGG | - | chr1_3:49418764-49418783 | Msa0122620:intron | 20.0% |
| !! | AAGGTGTATAATAAAAAATC+CGG | - | chr1_3:49419134-49419153 | Msa0122620:intron | 20.0% |
| !! | ATTGTTTAGTCAAATTATGT+AGG | - | chr1_3:49419201-49419220 | Msa0122620:intron | 20.0% |
| !!! | TTAGTTTTTGACAGTTAATA+TGG | + | chr1_3:49419612-49419631 | None:intergenic | 20.0% |
| !! | ATAATAAACATGACCATATT+AGG | + | chr1_3:49419878-49419897 | None:intergenic | 20.0% |
| !! | TTAAATAGATGAATAGGATT+TGG | + | chr1_3:49420487-49420506 | None:intergenic | 20.0% |
| !!! | ATTGACTTAAATAGATGAAT+AGG | + | chr1_3:49420493-49420512 | None:intergenic | 20.0% |
| !! | TGTTTATTATGGATTATGGA+TGG | - | chr1_3:49410894-49410913 | Msa0122620:intron | 25.0% |
| ! | ATATATAATGAGTGAGTGTA+TGG | + | chr1_3:49410990-49411009 | None:intergenic | 25.0% |
| !! | TGATTTTGTGCATCATATTT+TGG | - | chr1_3:49411073-49411092 | Msa0122620:intron | 25.0% |
| !! | GATTTTGTGCATCATATTTT+GGG | - | chr1_3:49411074-49411093 | Msa0122620:intron | 25.0% |
| ! | ATTCTAATAATACTATGTGG+TGG | - | chr1_3:49411314-49411333 | Msa0122620:intron | 25.0% |
| ! | CTTATCTCTTGATTATTAAC+TGG | - | chr1_3:49411478-49411497 | Msa0122620:intron | 25.0% |
| ! | TTTATTCCTTAATGTGTATG+TGG | - | chr1_3:49411610-49411629 | Msa0122620:intron | 25.0% |
| ! | AAAAATCCACATACACATTA+AGG | + | chr1_3:49411619-49411638 | None:intergenic | 25.0% |
| !!! | TTATTTTGTTGCATCATTGA+TGG | - | chr1_3:49411679-49411698 | Msa0122620:intron | 25.0% |
| ! | AGGAAGAAGCTTATTAAAAA+TGG | - | chr1_3:49411704-49411723 | Msa0122620:intron | 25.0% |
| ! | GGAATCATAAAATAGTTTCA+TGG | + | chr1_3:49411749-49411768 | None:intergenic | 25.0% |
| ! | TTTATGATTCCTCTTCAATT+TGG | - | chr1_3:49411758-49411777 | Msa0122620:intron | 25.0% |
| ! | CAATATATAGAGAAGGTTAA+AGG | - | chr1_3:49412040-49412059 | Msa0122620:CDS | 25.0% |
| !! | AGCATACATATTTTTCTTTG+AGG | + | chr1_3:49412296-49412315 | None:intergenic | 25.0% |
| ! | AAAAGTTCCATTCATTAGAT+TGG | - | chr1_3:49412453-49412472 | Msa0122620:intron | 25.0% |
| ! | TGCATATATAAGATAAGTTG+GGG | + | chr1_3:49412522-49412541 | None:intergenic | 25.0% |
| ! | CATGCATATATAAGATAAGT+TGG | + | chr1_3:49412524-49412543 | None:intergenic | 25.0% |
| ! | ATAAGGAAAAGGAAAGTAAA+AGG | + | chr1_3:49412610-49412629 | None:intergenic | 25.0% |
| ! | ATACCCAAACACAAAAAATA+AGG | + | chr1_3:49412627-49412646 | None:intergenic | 25.0% |
| !!! | TTGGCTTTTTTTTTTAAGGA+AGG | - | chr1_3:49412665-49412684 | Msa0122620:intron | 25.0% |
| ! | ATCTTATATGCTATATGTGT+GGG | + | chr1_3:49412736-49412755 | None:intergenic | 25.0% |
| ! | AATCTTATATGCTATATGTG+TGG | + | chr1_3:49412737-49412756 | None:intergenic | 25.0% |
| !! | ATACCTTTGACTTTGAATTT+GGG | + | chr1_3:49413163-49413182 | None:intergenic | 25.0% |
| !! | AATACCTTTGACTTTGAATT+TGG | + | chr1_3:49413164-49413183 | None:intergenic | 25.0% |
| ! | AAATCAAGCTAGTTAGAAAA+TGG | - | chr1_3:49413462-49413481 | Msa0122620:intron | 25.0% |
| !!! | GTCTAAGGTGTTTTTTTTAA+TGG | + | chr1_3:49413825-49413844 | None:intergenic | 25.0% |
| !!! | TTCAACCACAATTTTGATTT+TGG | - | chr1_3:49414156-49414175 | Msa0122620:intron | 25.0% |
| !! | TAACAATGAGCTTTGATTAT+TGG | + | chr1_3:49414597-49414616 | None:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTTTGCATT+GGG | + | chr1_3:49414632-49414651 | None:intergenic | 25.0% |
| !!! | AACTTATTTGCTTTTTGCAT+TGG | + | chr1_3:49414633-49414652 | None:intergenic | 25.0% |
| !! | GCAAAAAGCAAATAAGTTTT+AGG | - | chr1_3:49414635-49414654 | Msa0122620:intron | 25.0% |
| ! | ATGTTGATATGAAATGTTAG+AGG | + | chr1_3:49414853-49414872 | None:intergenic | 25.0% |
| !!! | ACAATTTTAAATTTTGGGTC+TGG | - | chr1_3:49415126-49415145 | Msa0122620:intron | 25.0% |
| !! | ATCAATTTTTGCAATTTGTC+AGG | - | chr1_3:49415338-49415357 | Msa0122620:intron | 25.0% |
| ! | GATTCAATTAATACTTCTTC+AGG | + | chr1_3:49415771-49415790 | None:intergenic | 25.0% |
| ! | AATTGGTCAAAGAATAAAGA+AGG | - | chr1_3:49415800-49415819 | Msa0122620:intron | 25.0% |
| ! | TTGTTTGAATATTTCTCAAG+TGG | + | chr1_3:49415895-49415914 | None:intergenic | 25.0% |
| !!! | ATTTGTCATTTTGTTTTCAG+GGG | - | chr1_3:49415969-49415988 | Msa0122620:intron | 25.0% |
| ! | AGCAAAATATTCATAAATGC+AGG | + | chr1_3:49416057-49416076 | None:intergenic | 25.0% |
| !!! | GAAGTTTTTTTTATTGTGTG+TGG | - | chr1_3:49416113-49416132 | Msa0122620:intron | 25.0% |
| !!! | AAGTAGAAAAAAGTTTTGGT+GGG | + | chr1_3:49416233-49416252 | None:intergenic | 25.0% |
| !!! | AAAGTAGAAAAAAGTTTTGG+TGG | + | chr1_3:49416234-49416253 | None:intergenic | 25.0% |
| !! | GCATTTTATTATTTATCCAC+AGG | + | chr1_3:49416498-49416517 | None:intergenic | 25.0% |
| !! | ATCATTTTATGCAATGGTTA+TGG | - | chr1_3:49416629-49416648 | Msa0122620:intron | 25.0% |
| ! | TACGAAAAAAAAAAAAGGCA+AGG | - | chr1_3:49416718-49416737 | Msa0122620:intron | 25.0% |
| ! | ACGAAAAAAAAAAAAGGCAA+GGG | - | chr1_3:49416719-49416738 | Msa0122620:intron | 25.0% |
| ! | TAATAGAAATATACAATGCG+AGG | + | chr1_3:49416836-49416855 | None:intergenic | 25.0% |
| ! | TGTCTAACTCTTATTATTCT+TGG | - | chr1_3:49416880-49416899 | Msa0122620:intron | 25.0% |
| ! | GTCTAACTCTTATTATTCTT+GGG | - | chr1_3:49416881-49416900 | Msa0122620:intron | 25.0% |
| ! | TGAAATAACATACAGTTATC+TGG | + | chr1_3:49417151-49417170 | None:intergenic | 25.0% |
| !! | TTGTTTGTCAAAAGTGTATT+TGG | - | chr1_3:49417318-49417337 | Msa0122620:intron | 25.0% |
| !!! | TATTTTTGAGTAAAAGATCG+TGG | + | chr1_3:49417378-49417397 | None:intergenic | 25.0% |
| ! | AGTATATTATTCTGTTCAAC+AGG | + | chr1_3:49417637-49417656 | None:intergenic | 25.0% |
| !! | GCTATTGTTATAGTACATTT+TGG | - | chr1_3:49417737-49417756 | Msa0122620:five_prime_UTR | 25.0% |
| !!! | TACATTTTGGCATGTTATTA+AGG | - | chr1_3:49417750-49417769 | Msa0122620:five_prime_UTR | 25.0% |
| !!! | TTATTTTTTGCAAGAAAAGG+AGG | + | chr1_3:49417858-49417877 | None:intergenic | 25.0% |
| ! | AACAAAAATCTGAATAGATG+GGG | + | chr1_3:49418203-49418222 | None:intergenic | 25.0% |
| ! | TACACAATATAACTGTAACT+AGG | + | chr1_3:49418419-49418438 | None:intergenic | 25.0% |
| ! | TTCTTAGAACAATTAACAGT+AGG | + | chr1_3:49418943-49418962 | None:intergenic | 25.0% |
| ! | TTACCATTACTATTGCATAA+AGG | - | chr1_3:49419053-49419072 | Msa0122620:intron | 25.0% |
| ! | TTTCCTTTATGCAATAGTAA+TGG | + | chr1_3:49419059-49419078 | None:intergenic | 25.0% |
| ! | AGGTGTATAATAAAAAATCC+GGG | - | chr1_3:49419135-49419154 | Msa0122620:intron | 25.0% |
| ! | GGACAAGATAAATTGTATAA+AGG | - | chr1_3:49419157-49419176 | Msa0122620:intron | 25.0% |
| !! | ATCTTGAGCTTTTCATTTTA+TGG | + | chr1_3:49419228-49419247 | None:intergenic | 25.0% |
| !!! | GCAAGATTTTTTATTTTGAC+AGG | + | chr1_3:49419350-49419369 | None:intergenic | 25.0% |
| ! | CTGTTTATTGTCTAATGAAT+TGG | - | chr1_3:49419564-49419583 | Msa0122620:intron | 25.0% |
| ! | TTTATTGTCTAATGAATTGG+TGG | - | chr1_3:49419567-49419586 | Msa0122620:intron | 25.0% |
| ! | ACAATAGCATAAGGTATAAA+CGG | + | chr1_3:49419656-49419675 | None:intergenic | 25.0% |
| ! | GTTAGAATTCAGATATCTAT+TGG | - | chr1_3:49419763-49419782 | Msa0122620:intron | 25.0% |
| ! | TGTCTTGAATTTATAAGCAT+GGG | - | chr1_3:49419830-49419849 | Msa0122620:intron | 25.0% |
| ! | CGATTATGTCAAAATAAATG+CGG | - | chr1_3:49419970-49419989 | Msa0122620:intron | 25.0% |
| ! | CAGAATAACTTACATAACTA+TGG | + | chr1_3:49420081-49420100 | None:intergenic | 25.0% |
| !!! | ATTCTGAAATCAGTTCATAA+AGG | - | chr1_3:49420095-49420114 | Msa0122620:intron | 25.0% |
| !!! | TTCTGAAATCAGTTCATAAA+GGG | - | chr1_3:49420096-49420115 | Msa0122620:intron | 25.0% |
| ! | TAGTTAATAAACCTTCACTA+GGG | - | chr1_3:49420125-49420144 | Msa0122620:intron | 25.0% |
| !! | CATTTTAACAAGGGTAAAAC+TGG | - | chr1_3:49410392-49410411 | Msa0122620:three_prime_UTR | 30.0% |
| ! | CAAGATTAGGTTTAGGTTTA+GGG | + | chr1_3:49410538-49410557 | None:intergenic | 30.0% |
| AAAAAGGCAAGATTAGGTTT+AGG | + | chr1_3:49410545-49410564 | None:intergenic | 30.0% | |
| AACTCAAAAAAGGCAAGATT+AGG | + | chr1_3:49410551-49410570 | None:intergenic | 30.0% | |
| TATAACACCAAAACAGCTAT+TGG | + | chr1_3:49410672-49410691 | None:intergenic | 30.0% | |
| CTGCTGTATTAATTCATTGT+TGG | + | chr1_3:49410753-49410772 | None:intergenic | 30.0% | |
| AACATGTAAAGAATGTGTGA+AGG | + | chr1_3:49410878-49410897 | None:intergenic | 30.0% | |
| ! | TATTATGGATTATGGATGGA+TGG | - | chr1_3:49410898-49410917 | Msa0122620:intron | 30.0% |
| ! | CATCACTTTCAAGTAACAAT+TGG | - | chr1_3:49411107-49411126 | Msa0122620:intron | 30.0% |
| !! | AAACAAGAGTGTTCTATTTG+TGG | - | chr1_3:49411204-49411223 | Msa0122620:intron | 30.0% |
| CATAGAGCTTCAAATATGAA+AGG | - | chr1_3:49411274-49411293 | Msa0122620:intron | 30.0% | |
| GACGATTTATTCATTAGTGT+AGG | - | chr1_3:49411443-49411462 | Msa0122620:intron | 30.0% | |
| ACTATAACACCAAATTGAAG+AGG | + | chr1_3:49411770-49411789 | None:intergenic | 30.0% | |
| AGAGTTTCCAATCTAATGAA+TGG | + | chr1_3:49412463-49412482 | None:intergenic | 30.0% | |
| ! | AAAAGCATAAATGATCATGG+TGG | + | chr1_3:49412561-49412580 | None:intergenic | 30.0% |
| ! | CAGAAAAGCATAAATGATCA+TGG | + | chr1_3:49412564-49412583 | None:intergenic | 30.0% |
| !! | TATGCTTTTCTGCTTTGTTA+AGG | - | chr1_3:49412572-49412591 | Msa0122620:intron | 30.0% |
| ! | TGTGTTTGGGTATACATTTT+CGG | - | chr1_3:49412634-49412653 | Msa0122620:intron | 30.0% |
| ! | TACATTTTCGGTCCATAAAT+TGG | - | chr1_3:49412646-49412665 | Msa0122620:intron | 30.0% |
| ATCACTAAGATGTACTTTCA+AGG | - | chr1_3:49412838-49412857 | Msa0122620:intron | 30.0% | |
| !! | TGATTGATGACAAGTTGATA+CGG | + | chr1_3:49413015-49413034 | None:intergenic | 30.0% |
| AAGTTGTTGAGAAGTGAAAA+TGG | + | chr1_3:49413139-49413158 | None:intergenic | 30.0% | |
| ! | TACCTTTGACTTTGAATTTG+GGG | + | chr1_3:49413162-49413181 | None:intergenic | 30.0% |
| ! | AAATCAACTAGTTTGAGCTA+AGG | - | chr1_3:49413721-49413740 | Msa0122620:intron | 30.0% |
| ! | AATCAACTAGTTTGAGCTAA+GGG | - | chr1_3:49413722-49413741 | Msa0122620:intron | 30.0% |
| TGTGTCCAAAATCAAAATTG+TGG | + | chr1_3:49414164-49414183 | None:intergenic | 30.0% | |
| !!! | ATTTTGATTTTGGACACAAG+TGG | - | chr1_3:49414166-49414185 | Msa0122620:intron | 30.0% |
| TTCATCTAAAGAGACAAGTT+TGG | - | chr1_3:49414198-49414217 | Msa0122620:intron | 30.0% | |
| ! | ACAATCTTTTCTATCATCTG+GGG | + | chr1_3:49414241-49414260 | None:intergenic | 30.0% |
| ! | CACAATCTTTTCTATCATCT+GGG | + | chr1_3:49414242-49414261 | None:intergenic | 30.0% |
| CCAAACATAGGTTAATCTAT+GGG | - | chr1_3:49414285-49414304 | Msa0122620:intron | 30.0% | |
| !!! | TATTTTTTGCAGGACAATGT+GGG | - | chr1_3:49414310-49414329 | Msa0122620:intron | 30.0% |
| ! | ATCCGCTATTTCAAAGTTTA+GGG | - | chr1_3:49414481-49414500 | Msa0122620:intron | 30.0% |
| !! | ATCCCTAAACTTTGAAATAG+CGG | + | chr1_3:49414486-49414505 | None:intergenic | 30.0% |
| GAAATTAGATACGTGCATAT+CGG | - | chr1_3:49414697-49414716 | Msa0122620:intron | 30.0% | |
| AAATTAGATACGTGCATATC+GGG | - | chr1_3:49414698-49414717 | Msa0122620:intron | 30.0% | |
| TAAAATTGTGATGTACAGGA+AGG | + | chr1_3:49415115-49415134 | None:intergenic | 30.0% | |
| TCTATCTTGATGAAAAAGCA+AGG | + | chr1_3:49415274-49415293 | None:intergenic | 30.0% | |
| ATAATCAGCATATTGTCTAC+TGG | - | chr1_3:49415454-49415473 | Msa0122620:intron | 30.0% | |
| ATGTTCATAATTTCAGCTAC+TGG | - | chr1_3:49415737-49415756 | Msa0122620:CDS | 30.0% | |
| TGTTCATAATTTCAGCTACT+GGG | - | chr1_3:49415738-49415757 | Msa0122620:CDS | 30.0% | |
| ! | GAAGTATTAATTGAATCCAC+TGG | - | chr1_3:49415774-49415793 | Msa0122620:CDS | 30.0% |
| !!! | TTTGTCATTTTGTTTTCAGG+GGG | - | chr1_3:49415970-49415989 | Msa0122620:intron | 30.0% |
| GTTAGTGAATTCACTAGTAA+GGG | + | chr1_3:49416013-49416032 | None:intergenic | 30.0% | |
| AGTTAGTGAATTCACTAGTA+AGG | + | chr1_3:49416014-49416033 | None:intergenic | 30.0% | |
| AAACTAAACTGGTGAAAGTA+AGG | + | chr1_3:49416185-49416204 | None:intergenic | 30.0% | |
| TAAACACACTTTGTATGGAT+AGG | - | chr1_3:49416462-49416481 | Msa0122620:intron | 30.0% | |
| AAAAAAAAAAAAGGCAAGGG+CGG | - | chr1_3:49416722-49416741 | Msa0122620:intron | 30.0% | |
| GGGAACTATCATAAATATCA+AGG | + | chr1_3:49416772-49416791 | None:intergenic | 30.0% | |
| ! | TATGATAGTTCCCATAGTTT+TGG | - | chr1_3:49416779-49416798 | Msa0122620:intron | 30.0% |
| CTCTTATTATTCTTGGGTAT+TGG | - | chr1_3:49416887-49416906 | Msa0122620:intron | 30.0% | |
| !! | ATTATTCTTGGGTATTGGTT+AGG | - | chr1_3:49416892-49416911 | Msa0122620:intron | 30.0% |
| GCTTTCATGTTTCGAATATA+TGG | - | chr1_3:49417011-49417030 | Msa0122620:intron | 30.0% | |
| TAGACTGCAAATTCAGTTAA+TGG | - | chr1_3:49417181-49417200 | Msa0122620:intron | 30.0% | |
| AAATTCAGTTAATGGCATAG+TGG | - | chr1_3:49417189-49417208 | Msa0122620:intron | 30.0% | |
| CAAAGCAATAACAGTATCAT+TGG | + | chr1_3:49417476-49417495 | None:intergenic | 30.0% | |
| CAATGATACTGTTATTGCTT+TGG | - | chr1_3:49417474-49417493 | Msa0122620:CDS | 30.0% | |
| TGATGTACTTCAATTCTTGT+TGG | - | chr1_3:49417656-49417675 | Msa0122620:CDS | 30.0% | |
| ! | ATGTTATTAAGGTGTGGTTT+TGG | - | chr1_3:49417761-49417780 | Msa0122620:five_prime_UTR | 30.0% |
| ! | TGTTATTAAGGTGTGGTTTT+GGG | - | chr1_3:49417762-49417781 | Msa0122620:five_prime_UTR | 30.0% |
| TTTATTTACTTGTCCTTTCC+AGG | - | chr1_3:49418001-49418020 | Msa0122620:intron | 30.0% | |
| GTATAAAACAAACCTCAATG+AGG | + | chr1_3:49418079-49418098 | None:intergenic | 30.0% | |
| TGTAAGATGAAAGCAATATC+AGG | + | chr1_3:49418165-49418184 | None:intergenic | 30.0% | |
| AAATGCAGTGAAGATAATGA+TGG | + | chr1_3:49418323-49418342 | None:intergenic | 30.0% | |
| TGATCATTGTGTTAGAAGAT+AGG | + | chr1_3:49418673-49418692 | None:intergenic | 30.0% | |
| TAACCAAAATTTACTTAGGG+TGG | - | chr1_3:49418768-49418787 | Msa0122620:intron | 30.0% | |
| ! | ATACTTTACTAATGGATGGT+GGG | - | chr1_3:49418800-49418819 | Msa0122620:intron | 30.0% |
| AACAAAAACATCACTCTTAC+CGG | + | chr1_3:49418843-49418862 | None:intergenic | 30.0% | |
| ATAACTGTACATTTACTGAC+TGG | + | chr1_3:49419010-49419029 | None:intergenic | 30.0% | |
| AAATGTACAGTTATTGATGC+TGG | - | chr1_3:49419016-49419035 | Msa0122620:intron | 30.0% | |
| AATGTACAGTTATTGATGCT+GGG | - | chr1_3:49419017-49419036 | Msa0122620:intron | 30.0% | |
| AATCTCTAATGAATGCTATC+AGG | + | chr1_3:49419098-49419117 | None:intergenic | 30.0% | |
| GGTGTATAATAAAAAATCCG+GGG | - | chr1_3:49419136-49419155 | Msa0122620:intron | 30.0% | |
| TATACAATTTATCTTGTCCC+CGG | + | chr1_3:49419156-49419175 | None:intergenic | 30.0% | |
| GATCAACATATTGTATGATC+AGG | + | chr1_3:49419426-49419445 | None:intergenic | 30.0% | |
| ATAAGAATGTACCATACTAC+CGG | + | chr1_3:49419460-49419479 | None:intergenic | 30.0% | |
| GTATAAATAGCGCACAATAT+TGG | + | chr1_3:49419541-49419560 | None:intergenic | 30.0% | |
| TTCAAGACAGTTCAAAAAGA+GGG | + | chr1_3:49419819-49419838 | None:intergenic | 30.0% | |
| ATTCAAGACAGTTCAAAAAG+AGG | + | chr1_3:49419820-49419839 | None:intergenic | 30.0% | |
| CTGTCTTGAATTTATAAGCA+TGG | - | chr1_3:49419829-49419848 | Msa0122620:intron | 30.0% | |
| GTCTTGAATTTATAAGCATG+GGG | - | chr1_3:49419831-49419850 | Msa0122620:intron | 30.0% | |
| !!! | TCTTTTTTGTCCTCCTAATA+TGG | - | chr1_3:49419862-49419881 | Msa0122620:intron | 30.0% |
| ATAAACATGACCATATTAGG+AGG | + | chr1_3:49419875-49419894 | None:intergenic | 30.0% | |
| ! | ACTATGGTTTTCTAGATGAA+CGG | + | chr1_3:49420065-49420084 | None:intergenic | 30.0% |
| CTAGTTAATAAACCTTCACT+AGG | - | chr1_3:49420124-49420143 | Msa0122620:intron | 30.0% | |
| AGTTAATAAACCTTCACTAG+GGG | - | chr1_3:49420126-49420145 | Msa0122620:intron | 30.0% | |
| ACAGATACAAATGATGTTCA+AGG | + | chr1_3:49420335-49420354 | None:intergenic | 30.0% | |
| !! | ATATCAGCCTTGTTATCTAA+AGG | - | chr1_3:49420417-49420436 | Msa0122620:five_prime_UTR | 30.0% |
| CCTATTTCCTTTAGATAACA+AGG | + | chr1_3:49420427-49420446 | None:intergenic | 30.0% | |
| ! | CCTTGTTATCTAAAGGAAAT+AGG | - | chr1_3:49420424-49420443 | Msa0122620:five_prime_UTR | 30.0% |
| CTAAAGGAAATAGGATCAAA+TGG | - | chr1_3:49420433-49420452 | Msa0122620:five_prime_UTR | 30.0% | |
| TGTGAGCTTAAGTGTATGTT+TGG | + | chr1_3:49410452-49410471 | None:intergenic | 35.0% | |
| AAACATACACTTAAGCTCAC+AGG | - | chr1_3:49410451-49410470 | Msa0122620:three_prime_UTR | 35.0% | |
| ! | GCAAGATTAGGTTTAGGTTT+AGG | + | chr1_3:49410539-49410558 | None:intergenic | 35.0% |
| ! | TTTCTGAAAAAGGTCTCTAC+AGG | - | chr1_3:49410579-49410598 | Msa0122620:three_prime_UTR | 35.0% |
| ! | TTCTGAAAAAGGTCTCTACA+GGG | - | chr1_3:49410580-49410599 | Msa0122620:three_prime_UTR | 35.0% |
| ACACAAGGTCAAGTAATACA+AGG | - | chr1_3:49410797-49410816 | Msa0122620:CDS | 35.0% | |
| ATGTAAAGAATGTGTGAAGG+AGG | + | chr1_3:49410875-49410894 | None:intergenic | 35.0% | |
| AGATGAAGAGTAAAAGTGAG+TGG | + | chr1_3:49411166-49411185 | None:intergenic | 35.0% | |
| ! | AGAGTGTTCTATTTGTGGAT+TGG | - | chr1_3:49411209-49411228 | Msa0122620:intron | 35.0% |
| TTTGCAATAGGACAAGCTTT+AGG | - | chr1_3:49411234-49411253 | Msa0122620:intron | 35.0% | |
| TTGCAATAGGACAAGCTTTA+GGG | - | chr1_3:49411235-49411254 | Msa0122620:intron | 35.0% | |
| AGAGAGATAGATGTGTAACT+TGG | + | chr1_3:49412073-49412092 | None:intergenic | 35.0% | |
| TTTAAGGAAGGTCCGTAAAT+TGG | - | chr1_3:49412677-49412696 | Msa0122620:intron | 35.0% | |
| TATCCAATAACAACAGAGAG+AGG | - | chr1_3:49412811-49412830 | Msa0122620:intron | 35.0% | |
| !!! | GACTAGTTTTAACAAGCTGT+AGG | - | chr1_3:49412942-49412961 | Msa0122620:intron | 35.0% |
| ! | AGGCTAGGAAATGGAATTTT+AGG | - | chr1_3:49412962-49412981 | Msa0122620:intron | 35.0% |
| ! | GAATTTTAGGCCATTTAGTG+CGG | - | chr1_3:49412975-49412994 | Msa0122620:intron | 35.0% |
| ATTTCTCAGACTGTGTTCTA+GGG | + | chr1_3:49413086-49413105 | None:intergenic | 35.0% | |
| TTCCCCAAATTCAAAGTCAA+AGG | - | chr1_3:49413157-49413176 | Msa0122620:intron | 35.0% | |
| AAAGTAACGAAAGAAGACGA+AGG | + | chr1_3:49413391-49413410 | None:intergenic | 35.0% | |
| ATAACACACCTTAAACACTC+TGG | - | chr1_3:49413682-49413701 | Msa0122620:CDS | 35.0% | |
| TAACACACCTTAAACACTCT+GGG | - | chr1_3:49413683-49413702 | Msa0122620:CDS | 35.0% | |
| !!! | GTTAGTTTTTTCTCCTTGAC+AGG | + | chr1_3:49413777-49413796 | None:intergenic | 35.0% |
| ! | GCACAATCTTTTCTATCATC+TGG | + | chr1_3:49414243-49414262 | None:intergenic | 35.0% |
| ! | CCAGGAGGTACATAAAATTA+GGG | + | chr1_3:49414265-49414284 | None:intergenic | 35.0% |
| GCCAAACATAGGTTAATCTA+TGG | - | chr1_3:49414284-49414303 | Msa0122620:intron | 35.0% | |
| CCCATAGATTAACCTATGTT+TGG | + | chr1_3:49414288-49414307 | None:intergenic | 35.0% | |
| !!! | TCTATGGGTCTATTTTTTGC+AGG | - | chr1_3:49414300-49414319 | Msa0122620:intron | 35.0% |
| !!! | CTATTTTTTGCAGGACAATG+TGG | - | chr1_3:49414309-49414328 | Msa0122620:intron | 35.0% |
| ! | TACTGTTGTTTGCTAATGGT+TGG | + | chr1_3:49414454-49414473 | None:intergenic | 35.0% |
| ! | GATCCGCTATTTCAAAGTTT+AGG | - | chr1_3:49414480-49414499 | Msa0122620:intron | 35.0% |
| AATTAGATACGTGCATATCG+GGG | - | chr1_3:49414699-49414718 | Msa0122620:intron | 35.0% | |
| AAAAACAGAGCTGAACATTC+TGG | + | chr1_3:49414923-49414942 | None:intergenic | 35.0% | |
| ! | TTTTGAACTTCTCAGATTCC+AGG | - | chr1_3:49414962-49414981 | Msa0122620:intron | 35.0% |
| TATGTGACCAGATTTCTTTC+AGG | - | chr1_3:49415158-49415177 | Msa0122620:CDS | 35.0% | |
| ATGTGACCAGATTTCTTTCA+GGG | - | chr1_3:49415159-49415178 | Msa0122620:CDS | 35.0% | |
| TTCCTATTTCATGTGCATGT+GGG | - | chr1_3:49415422-49415441 | Msa0122620:intron | 35.0% | |
| ACTGGAGTTTAGATTTACTG+TGG | - | chr1_3:49415472-49415491 | Msa0122620:intron | 35.0% | |
| AAATAGTACATACCTTTGCG+AGG | + | chr1_3:49415650-49415669 | None:intergenic | 35.0% | |
| ! | TTTCAACATGGAGCACTATA+AGG | + | chr1_3:49415693-49415712 | None:intergenic | 35.0% |
| TTATAGTGCTCCATGTTGAA+AGG | - | chr1_3:49415692-49415711 | Msa0122620:CDS | 35.0% | |
| TATAGTGCTCCATGTTGAAA+GGG | - | chr1_3:49415693-49415712 | Msa0122620:CDS | 35.0% | |
| ATTGAATCCACTGGTGTAAT+TGG | - | chr1_3:49415783-49415802 | Msa0122620:CDS | 35.0% | |
| TTCACTAACTTCTTCAGATG+AGG | - | chr1_3:49416024-49416043 | Msa0122620:intron | 35.0% | |
| TCACTAACTTCTTCAGATGA+GGG | - | chr1_3:49416025-49416044 | Msa0122620:intron | 35.0% | |
| AAGCTTATTTGTCTGCATAC+AGG | - | chr1_3:49416284-49416303 | Msa0122620:intron | 35.0% | |
| AGCTTATTTGTCTGCATACA+GGG | - | chr1_3:49416285-49416304 | Msa0122620:intron | 35.0% | |
| GAGGATGAACAAGACATAAA+AGG | + | chr1_3:49416817-49416836 | None:intergenic | 35.0% | |
| GAAGAACTAAGGTCAGAATT+GGG | - | chr1_3:49416918-49416937 | Msa0122620:intron | 35.0% | |
| AAGAACTAAGGTCAGAATTG+GGG | - | chr1_3:49416919-49416938 | Msa0122620:intron | 35.0% | |
| TAGGTAATAACAACTGATGC+CGG | - | chr1_3:49417068-49417087 | Msa0122620:intron | 35.0% | |
| ! | ATTTTGCATCATCTTGCTTC+AGG | - | chr1_3:49417432-49417451 | Msa0122620:CDS | 35.0% |
| TAAAGTTCTATGACCTATGC+TGG | - | chr1_3:49417713-49417732 | Msa0122620:five_prime_UTR | 35.0% | |
| TATAACAATAGCTCCAGCAT+AGG | + | chr1_3:49417729-49417748 | None:intergenic | 35.0% | |
| TTTGGCATGTTATTAAGGTG+TGG | - | chr1_3:49417755-49417774 | Msa0122620:five_prime_UTR | 35.0% | |
| !! | GTTATTAAGGTGTGGTTTTG+GGG | - | chr1_3:49417763-49417782 | Msa0122620:five_prime_UTR | 35.0% |
| GGAAAAAGAGGATGACAAAA+AGG | + | chr1_3:49417903-49417922 | None:intergenic | 35.0% | |
| GACAAGATCTAAGGAAAAAG+AGG | + | chr1_3:49417915-49417934 | None:intergenic | 35.0% | |
| AAATCACAGGACAAGATCTA+AGG | + | chr1_3:49417924-49417943 | None:intergenic | 35.0% | |
| TCTTGCCAAATCTATAGCTT+GGG | - | chr1_3:49418034-49418053 | Msa0122620:intron | 35.0% | |
| TGAATTGATTAGTGAAAGCG+TGG | - | chr1_3:49418467-49418486 | Msa0122620:intron | 35.0% | |
| ! | GAATTGATTAGTGAAAGCGT+GGG | - | chr1_3:49418468-49418487 | Msa0122620:intron | 35.0% |
| TGCATCATCTTCACTTGTAA+AGG | - | chr1_3:49418602-49418621 | Msa0122620:intron | 35.0% | |
| TTGTGTTAGAAGATAGGACT+TGG | + | chr1_3:49418667-49418686 | None:intergenic | 35.0% | |
| CTTCTAACACAATGATCATC+AGG | - | chr1_3:49418675-49418694 | Msa0122620:intron | 35.0% | |
| ! | GTTCCACCCTAAGTAAATTT+TGG | + | chr1_3:49418774-49418793 | None:intergenic | 35.0% |
| AAATTTACTTAGGGTGGAAC+TGG | - | chr1_3:49418774-49418793 | Msa0122620:intron | 35.0% | |
| AATTTACTTAGGGTGGAACT+GGG | - | chr1_3:49418775-49418794 | Msa0122620:intron | 35.0% | |
| ! | GATACTTTACTAATGGATGG+TGG | - | chr1_3:49418799-49418818 | Msa0122620:intron | 35.0% |
| ! | TACTTTACTAATGGATGGTG+GGG | - | chr1_3:49418801-49418820 | Msa0122620:intron | 35.0% |
| !! | TGTTAGTGTCAGACTTGTTA+AGG | + | chr1_3:49418969-49418988 | None:intergenic | 35.0% |
| ATGTACAGTTATTGATGCTG+GGG | - | chr1_3:49419018-49419037 | Msa0122620:intron | 35.0% | |
| TGACATAGACTATGCTCTTT+GGG | + | chr1_3:49419319-49419338 | None:intergenic | 35.0% | |
| ATGACATAGACTATGCTCTT+TGG | + | chr1_3:49419320-49419339 | None:intergenic | 35.0% | |
| TGTTGATCCATCTAACTATC+CGG | - | chr1_3:49419438-49419457 | Msa0122620:intron | 35.0% | |
| CACAATATTGGTGCAAGTAA+TGG | + | chr1_3:49419529-49419548 | None:intergenic | 35.0% | |
| TAAAGTTTACGAACTGTTGC+AGG | - | chr1_3:49419692-49419711 | Msa0122620:intron | 35.0% | |
| AAAGTTTACGAACTGTTGCA+GGG | - | chr1_3:49419693-49419712 | Msa0122620:intron | 35.0% | |
| ! | AAATCCGTTTTCCTACTAAC+AGG | - | chr1_3:49419902-49419921 | Msa0122620:intron | 35.0% |
| ATTGCCTGTTAGTAGGAAAA+CGG | + | chr1_3:49419909-49419928 | None:intergenic | 35.0% | |
| GATTAACACGGGATACAAAA+TGG | + | chr1_3:49420165-49420184 | None:intergenic | 35.0% | |
| !! | AAAAGGGTTGGTGATTAACA+CGG | + | chr1_3:49420177-49420196 | None:intergenic | 35.0% |
| ACAAGACAAATGAAAAGGGT+TGG | + | chr1_3:49420189-49420208 | None:intergenic | 35.0% | |
| GCACACAAGACAAATGAAAA+GGG | + | chr1_3:49420193-49420212 | None:intergenic | 35.0% | |
| TGCACACAAGACAAATGAAA+AGG | + | chr1_3:49420194-49420213 | None:intergenic | 35.0% | |
| ATAAGCAGTTATTAAGCGCA+CGG | - | chr1_3:49420215-49420234 | Msa0122620:intron | 35.0% | |
| AGCTTCTAACAATGCCATAT+TGG | + | chr1_3:49420259-49420278 | None:intergenic | 35.0% | |
| GTTAGAAGCTACTGAAAATC+TGG | - | chr1_3:49420269-49420288 | Msa0122620:intron | 35.0% | |
| !! | CCAAGTTTAATTTGACACCA+AGG | + | chr1_3:49420461-49420480 | None:intergenic | 35.0% |
| !! | CCTTGGTGTCAAATTAAACT+TGG | - | chr1_3:49420458-49420477 | Msa0122620:five_prime_UTR | 35.0% |
| !! | ACAGTATGTTCTAGAGGTCA+GGG | + | chr1_3:49410346-49410365 | None:intergenic | 40.0% |
| !! | TACAGTATGTTCTAGAGGTC+AGG | + | chr1_3:49410347-49410366 | None:intergenic | 40.0% |
| CAAGCTACAGTATGTTCTAG+AGG | + | chr1_3:49410352-49410371 | None:intergenic | 40.0% | |
| !! | CTCTAGAACATACTGTAGCT+TGG | - | chr1_3:49410350-49410369 | Msa0122620:three_prime_UTR | 40.0% |
| !! | TGTGGATTGGAGTTTGCAAT+AGG | - | chr1_3:49411222-49411241 | Msa0122620:intron | 40.0% |
| ! | AGCTAGAAACCAGTGAGTTT+TGG | - | chr1_3:49411367-49411386 | Msa0122620:intron | 40.0% |
| !! | AAACCAGTGAGTTTTGGTGT+TGG | - | chr1_3:49411373-49411392 | Msa0122620:intron | 40.0% |
| AATCCAACACCAAAACTCAC+TGG | + | chr1_3:49411379-49411398 | None:intergenic | 40.0% | |
| !!! | GTGAGTTTTGGTGTTGGATT+TGG | - | chr1_3:49411379-49411398 | Msa0122620:intron | 40.0% |
| !! | TTGTTGCATCATTGATGGTG+AGG | - | chr1_3:49411684-49411703 | Msa0122620:intron | 40.0% |
| ATGATCATGGTGGTAGAGTT+GGG | + | chr1_3:49412551-49412570 | None:intergenic | 40.0% | |
| AATGATCATGGTGGTAGAGT+TGG | + | chr1_3:49412552-49412571 | None:intergenic | 40.0% | |
| ! | TCTGCTTTGTTAAGGTGATG+TGG | - | chr1_3:49412580-49412599 | Msa0122620:intron | 40.0% |
| ACACCTCTCTCTGTTGTTAT+TGG | + | chr1_3:49412817-49412836 | None:intergenic | 40.0% | |
| !! | GTTTTAACAAGCTGTAGGCT+AGG | - | chr1_3:49412947-49412966 | Msa0122620:intron | 40.0% |
| CATTTCTCAGACTGTGTTCT+AGG | + | chr1_3:49413087-49413106 | None:intergenic | 40.0% | |
| AAATGGAGAGAAACGTTGTG+AGG | + | chr1_3:49413122-49413141 | None:intergenic | 40.0% | |
| TAGAAAATGACCTGCTTCCA+AGG | + | chr1_3:49413357-49413376 | None:intergenic | 40.0% | |
| ! | ACTAGTTTGAGCTAAGGGTT+AGG | - | chr1_3:49413727-49413746 | Msa0122620:intron | 40.0% |
| CTAGTTTGAGCTAAGGGTTA+GGG | - | chr1_3:49413728-49413747 | Msa0122620:intron | 40.0% | |
| ! | GGTTGAAGTCTAGCATCTTT+TGG | + | chr1_3:49414143-49414162 | None:intergenic | 40.0% |
| TTGGACACAAGTGGTTAATG+TGG | - | chr1_3:49414175-49414194 | Msa0122620:intron | 40.0% | |
| ! | CCCTAATTTTATGTACCTCC+TGG | - | chr1_3:49414262-49414281 | Msa0122620:intron | 40.0% |
| ! | GCCAGGAGGTACATAAAATT+AGG | + | chr1_3:49414266-49414285 | None:intergenic | 40.0% |
| AGATTAACCTATGTTTGGCC+AGG | + | chr1_3:49414283-49414302 | None:intergenic | 40.0% | |
| AACACAACCAGTGTAGTCAA+TGG | - | chr1_3:49414418-49414437 | Msa0122620:CDS | 40.0% | |
| ! | CCACTACTGTTGTTTGCTAA+TGG | + | chr1_3:49414458-49414477 | None:intergenic | 40.0% |
| CCATTAGCAAACAACAGTAG+TGG | - | chr1_3:49414455-49414474 | Msa0122620:CDS | 40.0% | |
| !! | CGTTGTGCTGCACTTTTTAA+TGG | + | chr1_3:49414754-49414773 | None:intergenic | 40.0% |
| ! | TTAAAAAGTGCAGCACAACG+AGG | - | chr1_3:49414754-49414773 | Msa0122620:CDS | 40.0% |
| TTCAAAGCTGCGGGAATATA+TGG | - | chr1_3:49415007-49415026 | Msa0122620:CDS | 40.0% | |
| TGAAAGCTAACCTGCAGATA+TGG | + | chr1_3:49415092-49415111 | None:intergenic | 40.0% | |
| GAATGACCCTGAAAGAAATC+TGG | + | chr1_3:49415168-49415187 | None:intergenic | 40.0% | |
| ! | GTGCTTTTGCAGTATAACAC+AGG | + | chr1_3:49415215-49415234 | None:intergenic | 40.0% |
| CAATGCATTCAGTACAAGCT+CGG | + | chr1_3:49415298-49415317 | None:intergenic | 40.0% | |
| CTTCCTATTTCATGTGCATG+TGG | - | chr1_3:49415421-49415440 | Msa0122620:intron | 40.0% | |
| CCACACATTCTATCATATCG+CGG | + | chr1_3:49415623-49415642 | None:intergenic | 40.0% | |
| TTGCACAAACCCTTTCAACA+TGG | + | chr1_3:49415705-49415724 | None:intergenic | 40.0% | |
| TCTTTGACCAATTACACCAG+TGG | + | chr1_3:49415793-49415812 | None:intergenic | 40.0% | |
| ATCAGAGGATACAAGCACAT+AGG | + | chr1_3:49415860-49415879 | None:intergenic | 40.0% | |
| ! | TTTCTCAAGTGGCTTGTCAA+TGG | + | chr1_3:49415884-49415903 | None:intergenic | 40.0% |
| CACTAACTTCTTCAGATGAG+GGG | - | chr1_3:49416026-49416045 | Msa0122620:intron | 40.0% | |
| CTTGCTAACAAGATCTGTTG+TGG | + | chr1_3:49416335-49416354 | None:intergenic | 40.0% | |
| AGATCTTGTTAGCAAGAGTG+TGG | - | chr1_3:49416339-49416358 | Msa0122620:intron | 40.0% | |
| ATGAAACCAGCAAGCAAAGT+AGG | + | chr1_3:49416391-49416410 | None:intergenic | 40.0% | |
| CACACTTTGTATGGATAGGT+AGG | - | chr1_3:49416466-49416485 | Msa0122620:intron | 40.0% | |
| CAACAACTTGTACAAGTGAG+CGG | + | chr1_3:49416529-49416548 | None:intergenic | 40.0% | |
| GAAAAGACAAAACAACCCAG+TGG | - | chr1_3:49416553-49416572 | Msa0122620:intron | 40.0% | |
| CCATACATTACACAACCACT+GGG | + | chr1_3:49416571-49416590 | None:intergenic | 40.0% | |
| TCCATACATTACACAACCAC+TGG | + | chr1_3:49416572-49416591 | None:intergenic | 40.0% | |
| TAAACATCAACGACCTATGC+AGG | + | chr1_3:49416700-49416719 | None:intergenic | 40.0% | |
| !! | TTCTTGGGTATTGGTTAGGT+TGG | - | chr1_3:49416896-49416915 | Msa0122620:intron | 40.0% |
| !! | TGGTTAGGTTGGAAGAACTA+AGG | - | chr1_3:49416907-49416926 | Msa0122620:intron | 40.0% |
| GGAAGAACTAAGGTCAGAAT+TGG | - | chr1_3:49416917-49416936 | Msa0122620:intron | 40.0% | |
| AGAACTAAGGTCAGAATTGG+GGG | - | chr1_3:49416920-49416939 | Msa0122620:intron | 40.0% | |
| TGGAATGATCCACCCAAATA+TGG | - | chr1_3:49416958-49416977 | Msa0122620:intron | 40.0% | |
| TCTCTAACTAAATCCACGCT+AGG | - | chr1_3:49417049-49417068 | Msa0122620:intron | 40.0% | |
| ! | TCAGTTGTTATTACCTAGCG+TGG | + | chr1_3:49417065-49417084 | None:intergenic | 40.0% |
| AGGTAATAACAACTGATGCC+GGG | - | chr1_3:49417069-49417088 | Msa0122620:intron | 40.0% | |
| TTCAGTTAATGGCATAGTGG+TGG | - | chr1_3:49417192-49417211 | Msa0122620:intron | 40.0% | |
| ATCATCTTGCTTCAGGTAGA+TGG | - | chr1_3:49417439-49417458 | Msa0122620:CDS | 40.0% | |
| TCATGTCTCAACGAAATCAC+AGG | + | chr1_3:49417937-49417956 | None:intergenic | 40.0% | |
| GTCTTGCCAAATCTATAGCT+TGG | - | chr1_3:49418033-49418052 | Msa0122620:intron | 40.0% | |
| TCCATCCCAAGCTATAGATT+TGG | + | chr1_3:49418042-49418061 | None:intergenic | 40.0% | |
| TACAAAGTGAAGACGGAGTT+TGG | + | chr1_3:49418525-49418544 | None:intergenic | 40.0% | |
| AAACTCCGTCTTCACTTTGT+AGG | - | chr1_3:49418524-49418543 | Msa0122620:intron | 40.0% | |
| ACTGACCTACAAAGTGAAGA+CGG | + | chr1_3:49418532-49418551 | None:intergenic | 40.0% | |
| TATATGGTAGAGACCCCAAT+TGG | - | chr1_3:49418704-49418723 | Msa0122620:intron | 40.0% | |
| ATATGGTAGAGACCCCAATT+GGG | - | chr1_3:49418705-49418724 | Msa0122620:intron | 40.0% | |
| ATTTACTTAGGGTGGAACTG+GGG | - | chr1_3:49418776-49418795 | Msa0122620:intron | 40.0% | |
| ACTGGGGGATACTTTACTAA+TGG | - | chr1_3:49418792-49418811 | Msa0122620:intron | 40.0% | |
| GGGGATACTTTACTAATGGA+TGG | - | chr1_3:49418796-49418815 | Msa0122620:intron | 40.0% | |
| GACATAGACTATGCTCTTTG+GGG | + | chr1_3:49419318-49419337 | None:intergenic | 40.0% | |
| CATACTACCGGATAGTTAGA+TGG | + | chr1_3:49419448-49419467 | None:intergenic | 40.0% | |
| CATCTAACTATCCGGTAGTA+TGG | - | chr1_3:49419446-49419465 | Msa0122620:intron | 40.0% | |
| AACCTAAGCTGTATGGATAG+AGG | + | chr1_3:49419503-49419522 | None:intergenic | 40.0% | |
| ATGGTAGAACCTAAGCTGTA+TGG | + | chr1_3:49419510-49419529 | None:intergenic | 40.0% | |
| ! | TTGTCTAATGAATTGGTGGC+TGG | - | chr1_3:49419571-49419590 | Msa0122620:intron | 40.0% |
| GATAGACGGACAATAGCATA+AGG | + | chr1_3:49419665-49419684 | None:intergenic | 40.0% | |
| AAGTTTACGAACTGTTGCAG+GGG | - | chr1_3:49419694-49419713 | Msa0122620:intron | 40.0% | |
| GGCTAGTAGTTATCTGAGAA+AGG | - | chr1_3:49419720-49419739 | Msa0122620:intron | 40.0% | |
| AGTAGTTATCTGAGAAAGGC+TGG | - | chr1_3:49419724-49419743 | Msa0122620:intron | 40.0% | |
| GTAGTTATCTGAGAAAGGCT+GGG | - | chr1_3:49419725-49419744 | Msa0122620:intron | 40.0% | |
| TAGTTATCTGAGAAAGGCTG+GGG | - | chr1_3:49419726-49419745 | Msa0122620:intron | 40.0% | |
| ! | GTTTTCCTACTAACAGGCAA+TGG | - | chr1_3:49419908-49419927 | Msa0122620:intron | 40.0% |
| CAGTACGCGTCATATTCATT+TGG | + | chr1_3:49420010-49420029 | None:intergenic | 40.0% | |
| !! | AAAGGGTTGGTGATTAACAC+GGG | + | chr1_3:49420176-49420195 | None:intergenic | 40.0% |
| ATATCGTACACGTGCCAATA+TGG | - | chr1_3:49420242-49420261 | Msa0122620:intron | 40.0% | |
| GAAGCTACTGAAAATCTGGT+TGG | - | chr1_3:49420273-49420292 | Msa0122620:intron | 40.0% | |
| AATAGGATCAAATGGCACCT+TGG | - | chr1_3:49420441-49420460 | Msa0122620:five_prime_UTR | 40.0% | |
| GAAAATTGAAGGGGGAAGAG+CGG | - | chr1_3:49410275-49410294 | Msa0122620:three_prime_UTR | 45.0% | |
| !! | TATGGGTTGATGGAGGCTAT+GGG | + | chr1_3:49410620-49410639 | None:intergenic | 45.0% |
| ! | TGGTTAAAGTGCTTGGATGG+AGG | + | chr1_3:49410644-49410663 | None:intergenic | 45.0% |
| ! | AGGTGGTTAAAGTGCTTGGA+TGG | + | chr1_3:49410647-49410666 | None:intergenic | 45.0% |
| CAAAACAGCTATTGGTCAGG+TGG | + | chr1_3:49410664-49410683 | None:intergenic | 45.0% | |
| ! | CACCTGACCAATAGCTGTTT+TGG | - | chr1_3:49410662-49410681 | Msa0122620:three_prime_UTR | 45.0% |
| CACCAAAACAGCTATTGGTC+AGG | + | chr1_3:49410667-49410686 | None:intergenic | 45.0% | |
| !! | CAATAGGACAAGCTTTAGGG+TGG | - | chr1_3:49411238-49411257 | Msa0122620:intron | 45.0% |
| TGCAATTTGTATGACCCGTG+CGG | - | chr1_3:49412904-49412923 | Msa0122620:intron | 45.0% | |
| ACAAGCTGTAGGCTAGGAAA+TGG | - | chr1_3:49412953-49412972 | Msa0122620:intron | 45.0% | |
| GATTCACGCTGTATCCACTA+CGG | - | chr1_3:49413278-49413297 | Msa0122620:CDS | 45.0% | |
| AGAAGCTTGATTCTCCGTAG+TGG | + | chr1_3:49413295-49413314 | None:intergenic | 45.0% | |
| ! | GCTGACTTAGCTTCAGATTG+AGG | + | chr1_3:49413580-49413599 | None:intergenic | 45.0% |
| AGCTCTTAGACAGACACCTT+TGG | - | chr1_3:49413620-49413639 | Msa0122620:intron | 45.0% | |
| GCTCTTAGACAGACACCTTT+GGG | - | chr1_3:49413621-49413640 | Msa0122620:intron | 45.0% | |
| !! | AGACAGACACCTTTGGGATT+AGG | - | chr1_3:49413627-49413646 | Msa0122620:intron | 45.0% |
| ATACACACGCCTAATCCCAA+AGG | + | chr1_3:49413639-49413658 | None:intergenic | 45.0% | |
| ACACCTTAAACACTCTGGGT+GGG | - | chr1_3:49413687-49413706 | Msa0122620:CDS | 45.0% | |
| ! | TTAAACACTCTGGGTGGGTT+GGG | - | chr1_3:49413692-49413711 | Msa0122620:CDS | 45.0% |
| TGAGCTAAGGGTTAGGGATT+TGG | - | chr1_3:49413734-49413753 | Msa0122620:intron | 45.0% | |
| TCAACGTGTTTGTGTCGTGT+CGG | - | chr1_3:49414043-49414062 | Msa0122620:intron | 45.0% | |
| GTCGGATGTTTGTGCTTCAT+AGG | - | chr1_3:49414061-49414080 | Msa0122620:intron | 45.0% | |
| TTAACCTATGTTTGGCCAGG+AGG | + | chr1_3:49414280-49414299 | None:intergenic | 45.0% | |
| ACAACCAGTGTAGTCAATGG+TGG | - | chr1_3:49414421-49414440 | Msa0122620:CDS | 45.0% | |
| ! | CTATCCACCATTGACTACAC+TGG | + | chr1_3:49414428-49414447 | None:intergenic | 45.0% |
| !! | GTGTAGTCAATGGTGGATAG+TGG | - | chr1_3:49414428-49414447 | Msa0122620:CDS | 45.0% |
| ! | AGCACAACGAGGTTTTGCAT+GGG | - | chr1_3:49414765-49414784 | Msa0122620:CDS | 45.0% |
| GTCAATAGCAGCCACTATAG+TGG | + | chr1_3:49414819-49414838 | None:intergenic | 45.0% | |
| TGAACTTCTCAGATTCCAGG+TGG | - | chr1_3:49414965-49414984 | Msa0122620:intron | 45.0% | |
| AAAGCTGCGGGAATATATGG+AGG | - | chr1_3:49415010-49415029 | Msa0122620:CDS | 45.0% | |
| AAGCTGCGGGAATATATGGA+GGG | - | chr1_3:49415011-49415030 | Msa0122620:CDS | 45.0% | |
| CATGTGACAAGTGCAAGATC+AGG | + | chr1_3:49415058-49415077 | None:intergenic | 45.0% | |
| GATGTTGATGCCATATCTGC+AGG | - | chr1_3:49415079-49415098 | Msa0122620:intron | 45.0% | |
| AGGGTCATTCACGACTAATG+TGG | - | chr1_3:49415178-49415197 | Msa0122620:intron | 45.0% | |
| CGTGCTGTGTTAACTAATGC+AGG | - | chr1_3:49415363-49415382 | Msa0122620:intron | 45.0% | |
| AGGTCAAGCAAATGCAGCTA+CGG | - | chr1_3:49415383-49415402 | Msa0122620:intron | 45.0% | |
| AGCCCACATGCACATGAAAT+AGG | + | chr1_3:49415427-49415446 | None:intergenic | 45.0% | |
| TTGGGTCCTTTCTTATCTCC+AGG | - | chr1_3:49415584-49415603 | Msa0122620:CDS | 45.0% | |
| TGGGTCCTTTCTTATCTCCA+GGG | - | chr1_3:49415585-49415604 | Msa0122620:CDS | 45.0% | |
| CTTCACCCTGGAGATAAGAA+AGG | + | chr1_3:49415593-49415612 | None:intergenic | 45.0% | |
| CCGCGATATGATAGAATGTG+TGG | - | chr1_3:49415620-49415639 | Msa0122620:intron | 45.0% | |
| ! | TGGCTTGTCAATGGAATCAG+AGG | + | chr1_3:49415875-49415894 | None:intergenic | 45.0% |
| GAGTGTGGCAATTGAGTCTT+TGG | - | chr1_3:49416354-49416373 | Msa0122620:intron | 45.0% | |
| CTTCTTCCTACTTTGCTTGC+TGG | - | chr1_3:49416382-49416401 | Msa0122620:intron | 45.0% | |
| CCCAGTGGTTGTGTAATGTA+TGG | - | chr1_3:49416568-49416587 | Msa0122620:intron | 45.0% | |
| CAATTCAAGACGTCCTGCAT+AGG | - | chr1_3:49416684-49416703 | Msa0122620:intron | 45.0% | |
| GGGCGGATAGTTGAATCAAT+TGG | - | chr1_3:49416739-49416758 | Msa0122620:intron | 45.0% | |
| TAAGGTCAGAATTGGGGGAA+TGG | - | chr1_3:49416925-49416944 | Msa0122620:intron | 45.0% | |
| AGAATTGGGGGAATGGCAAA+AGG | - | chr1_3:49416932-49416951 | Msa0122620:intron | 45.0% | |
| CGAGCATGGTAGCCATATTT+GGG | + | chr1_3:49416973-49416992 | None:intergenic | 45.0% | |
| CCAAATATGGCTACCATGCT+CGG | - | chr1_3:49416971-49416990 | Msa0122620:intron | 45.0% | |
| CAAATATGGCTACCATGCTC+GGG | - | chr1_3:49416972-49416991 | Msa0122620:intron | 45.0% | |
| AAATATGGCTACCATGCTCG+GGG | - | chr1_3:49416973-49416992 | Msa0122620:intron | 45.0% | |
| GGTAATAACAACTGATGCCG+GGG | - | chr1_3:49417070-49417089 | Msa0122620:intron | 45.0% | |
| CATCTTTCTCCAAACGTCAC+TGG | + | chr1_3:49417099-49417118 | None:intergenic | 45.0% | |
| CAGTGACGTTTGGAGAAAGA+TGG | - | chr1_3:49417097-49417116 | Msa0122620:intron | 45.0% | |
| CGTTTGGAGAAAGATGGTTC+AGG | - | chr1_3:49417103-49417122 | Msa0122620:intron | 45.0% | |
| CATCACATTGCACAAGCGAA+TGG | + | chr1_3:49417355-49417374 | None:intergenic | 45.0% | |
| ACTGTTATTGCTTTGGCCAG+TGG | - | chr1_3:49417481-49417500 | Msa0122620:CDS | 45.0% | |
| CTGTTATTGCTTTGGCCAGT+GGG | - | chr1_3:49417482-49417501 | Msa0122620:CDS | 45.0% | |
| TTCTTCTCTAGACAGCGATG+AGG | - | chr1_3:49417525-49417544 | Msa0122620:intron | 45.0% | |
| CGATGAGGCAATTCAACTTC+AGG | - | chr1_3:49417540-49417559 | Msa0122620:intron | 45.0% | |
| AAAAGCTCACAACTGCATGC+TGG | + | chr1_3:49417789-49417808 | None:intergenic | 45.0% | |
| TGTCCTTTCCAGGTAATGCA+AGG | - | chr1_3:49418011-49418030 | Msa0122620:intron | 45.0% | |
| AGACCTTGCATTACCTGGAA+AGG | + | chr1_3:49418017-49418036 | None:intergenic | 45.0% | |
| GCCAAATCTATAGCTTGGGA+TGG | - | chr1_3:49418038-49418057 | Msa0122620:intron | 45.0% | |
| TCTATAGCTTGGGATGGAGA+AGG | - | chr1_3:49418044-49418063 | Msa0122620:intron | 45.0% | |
| ACGTGGAGGATTACTATTGC+AGG | + | chr1_3:49418101-49418120 | None:intergenic | 45.0% | |
| TAGTAATCCTCCACGTTCCT+TGG | - | chr1_3:49418105-49418124 | Msa0122620:intron | 45.0% | |
| AGTAATCCTCCACGTTCCTT+GGG | - | chr1_3:49418106-49418125 | Msa0122620:intron | 45.0% | |
| ACTTTGTAGGTCAGTGTGAC+TGG | - | chr1_3:49418537-49418556 | Msa0122620:intron | 45.0% | |
| TGTGACTGGTGCAAATAGTG+AGG | - | chr1_3:49418551-49418570 | Msa0122620:intron | 45.0% | |
| GATCATCAGGCTGCTGTATA+TGG | - | chr1_3:49418688-49418707 | Msa0122620:intron | 45.0% | |
| TATGGTAGAGACCCCAATTG+GGG | - | chr1_3:49418706-49418725 | Msa0122620:intron | 45.0% | |
| TTTACTTAGGGTGGAACTGG+GGG | - | chr1_3:49418777-49418796 | Msa0122620:intron | 45.0% | |
| TCTTACCGGTCAAACGATTG+TGG | + | chr1_3:49418829-49418848 | None:intergenic | 45.0% | |
| CAGTTATTGATGCTGGGGAA+CGG | - | chr1_3:49419023-49419042 | Msa0122620:intron | 45.0% | |
| TGTATGATCAGGCGACTGTT+AGG | + | chr1_3:49419415-49419434 | None:intergenic | 45.0% | |
| GTCCTCTATCCATACAGCTT+AGG | - | chr1_3:49419498-49419517 | Msa0122620:intron | 45.0% | |
| AGGGAAAACCAGTGAACTGT+GGG | + | chr1_3:49419800-49419819 | None:intergenic | 45.0% | |
| !!! | TAATACTATTTTTTTTATAA+AGG | - | chr1_3:49411871-49411890 | Msa0122620:intron | 5.0% |
| !!! | ATTTTTTTATTTATTTTATG+TGG | + | chr1_3:49412348-49412367 | None:intergenic | 5.0% |
| GAGGTCAGGGAAGCAAGATT+GGG | + | chr1_3:49410333-49410352 | None:intergenic | 50.0% | |
| AGAGGTCAGGGAAGCAAGAT+TGG | + | chr1_3:49410334-49410353 | None:intergenic | 50.0% | |
| AACTGGCTGAAACTCGCGTT+TGG | - | chr1_3:49410409-49410428 | Msa0122620:three_prime_UTR | 50.0% | |
| ACTGGCTGAAACTCGCGTTT+GGG | - | chr1_3:49410410-49410429 | Msa0122620:three_prime_UTR | 50.0% | |
| !! | CTATGGGTTGATGGAGGCTA+TGG | + | chr1_3:49410621-49410640 | None:intergenic | 50.0% |
| AGTGCTTGGATGGAGGCTAT+GGG | + | chr1_3:49410637-49410656 | None:intergenic | 50.0% | |
| AAGTGCTTGGATGGAGGCTA+TGG | + | chr1_3:49410638-49410657 | None:intergenic | 50.0% | |
| ! | GGTCAGGTGGTTAAAGTGCT+TGG | + | chr1_3:49410651-49410670 | None:intergenic | 50.0% |
| !! | AGCTTTAGGGTGGCTACATG+AGG | - | chr1_3:49411248-49411267 | Msa0122620:intron | 50.0% |
| TGTAGCAGCTCCGCACTAAA+TGG | + | chr1_3:49412988-49413007 | None:intergenic | 50.0% | |
| !! | CTCAGACTGTGTTCTAGGGT+TGG | + | chr1_3:49413082-49413101 | None:intergenic | 50.0% |
| CGTGAAGCAAACATCTGCAG+AGG | + | chr1_3:49413249-49413268 | None:intergenic | 50.0% | |
| GGACCTTGGGGAAGGAAAAT+GGG | + | chr1_3:49413336-49413355 | None:intergenic | 50.0% | |
| AGGACCTTGGGGAAGGAAAA+TGG | + | chr1_3:49413337-49413356 | None:intergenic | 50.0% | |
| ! | TTTTCCTTCCCCAAGGTCCT+TGG | - | chr1_3:49413337-49413356 | Msa0122620:intron | 50.0% |
| CACACCTTAAACACTCTGGG+TGG | - | chr1_3:49413686-49413705 | Msa0122620:CDS | 50.0% | |
| ! | CAACCCACCCAGAGTGTTTA+AGG | + | chr1_3:49413693-49413712 | None:intergenic | 50.0% |
| CTTAAACACTCTGGGTGGGT+TGG | - | chr1_3:49413691-49413710 | Msa0122620:CDS | 50.0% | |
| GCTAAGGGTTAGGGATTTGG+AGG | - | chr1_3:49413737-49413756 | Msa0122620:intron | 50.0% | |
| GTTAGGGATTTGGAGGTCCA+GGG | - | chr1_3:49413744-49413763 | Msa0122620:intron | 50.0% | |
| ! | ACGTGTCTGTGGAGTGTCTA+AGG | + | chr1_3:49413840-49413859 | None:intergenic | 50.0% |
| ! | ATGTGTCTGAGACGTGTCTG+TGG | + | chr1_3:49413851-49413870 | None:intergenic | 50.0% |
| TGTACCTCCTGGCCAAACAT+AGG | - | chr1_3:49414273-49414292 | Msa0122620:intron | 50.0% | |
| ! | CAGCACAACGAGGTTTTGCA+TGG | - | chr1_3:49414764-49414783 | Msa0122620:CDS | 50.0% |
| ! | AGGTTTTGCATGGGAGCCTA+TGG | - | chr1_3:49414774-49414793 | Msa0122620:CDS | 50.0% |
| ! | GGTTTTGCATGGGAGCCTAT+GGG | - | chr1_3:49414775-49414794 | Msa0122620:CDS | 50.0% |
| TGCAGAGGGTTTCAAAGCTG+CGG | - | chr1_3:49414997-49415016 | Msa0122620:CDS | 50.0% | |
| CAAGCAAATGCAGCTACGGT+AGG | - | chr1_3:49415387-49415406 | Msa0122620:intron | 50.0% | |
| TCTTATCTCCAGGGTGAAGC+AGG | - | chr1_3:49415594-49415613 | Msa0122620:intron | 50.0% | |
| ATGTGTGGAAAGCCTCGCAA+AGG | - | chr1_3:49415635-49415654 | Msa0122620:intron | 50.0% | |
| GATAGGTAGGTGTAGTCCTG+TGG | - | chr1_3:49416479-49416498 | Msa0122620:intron | 50.0% | |
| GCATGGTAGCCATATTTGGG+TGG | + | chr1_3:49416970-49416989 | None:intergenic | 50.0% | |
| CCGAGCATGGTAGCCATATT+TGG | + | chr1_3:49416974-49416993 | None:intergenic | 50.0% | |
| AGTAAGACATACCCCGAGCA+TGG | + | chr1_3:49416987-49417006 | None:intergenic | 50.0% | |
| ACTTCAGGCATGCCTAGATG+CGG | - | chr1_3:49417555-49417574 | Msa0122620:intron | 50.0% | |
| GGGTTGACATTACCGCATCT+AGG | + | chr1_3:49417570-49417589 | None:intergenic | 50.0% | |
| TGGCAAGACCTTGCATTACC+TGG | + | chr1_3:49418022-49418041 | None:intergenic | 50.0% | |
| TCAGTCATGATTCGTGCCCA+AGG | + | chr1_3:49418125-49418144 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTCTG+TGG | - | chr1_3:49418370-49418389 | Msa0122620:intron | 50.0% | |
| TAGTGAGGCTGAAGCTGCAA+AGG | - | chr1_3:49418566-49418585 | Msa0122620:intron | 50.0% | |
| GGGAACCACAATCGTTTGAC+CGG | - | chr1_3:49418821-49418840 | Msa0122620:intron | 50.0% | |
| GTCTGTAACCCACAGTTCAC+TGG | - | chr1_3:49419789-49419808 | Msa0122620:intron | 50.0% | |
| GAGGGAAAACCAGTGAACTG+TGG | + | chr1_3:49419801-49419820 | None:intergenic | 50.0% | |
| CCTACTAACAGGCAATGGAC+CGG | - | chr1_3:49419913-49419932 | Msa0122620:intron | 50.0% | |
| CTACTAACAGGCAATGGACC+GGG | - | chr1_3:49419914-49419933 | Msa0122620:intron | 50.0% | |
| AACAGAAACGCCCCTAGTGA+AGG | + | chr1_3:49420139-49420158 | None:intergenic | 50.0% | |
| TATCTGTGCTCACTGCACCT+AGG | - | chr1_3:49420348-49420367 | Msa0122620:five_prime_UTR | 50.0% | |
| CTGCATCTGACAGCATTCCT+AGG | + | chr1_3:49420368-49420387 | None:intergenic | 50.0% | |
| AGGAATGCTGTCAGATGCAG+AGG | - | chr1_3:49420368-49420387 | Msa0122620:five_prime_UTR | 50.0% | |
| CTGGCTGAAACTCGCGTTTG+GGG | - | chr1_3:49410411-49410430 | Msa0122620:three_prime_UTR | 55.0% | |
| !! | TGGAGGCTATGGGTTGATGG+AGG | + | chr1_3:49410627-49410646 | None:intergenic | 55.0% |
| ! | GGATGGAGGCTATGGGTTGA+TGG | + | chr1_3:49410630-49410649 | None:intergenic | 55.0% |
| GGAAGGAAAATGGGAGCAGC+AGG | + | chr1_3:49413327-49413346 | None:intergenic | 55.0% | |
| ! | GCTCCCATTTTCCTTCCCCA+AGG | - | chr1_3:49413330-49413349 | Msa0122620:intron | 55.0% |
| ACCTGCTTCCAAGGACCTTG+GGG | + | chr1_3:49413348-49413367 | None:intergenic | 55.0% | |
| GACCTGCTTCCAAGGACCTT+GGG | + | chr1_3:49413349-49413368 | None:intergenic | 55.0% | |
| TGACCTGCTTCCAAGGACCT+TGG | + | chr1_3:49413350-49413369 | None:intergenic | 55.0% | |
| GGTTAGGGATTTGGAGGTCC+AGG | - | chr1_3:49413743-49413762 | Msa0122620:intron | 55.0% | |
| CCTTGACAGGACTTGAACCC+TGG | + | chr1_3:49413764-49413783 | None:intergenic | 55.0% | |
| CCAGGGTTCAAGTCCTGTCA+AGG | - | chr1_3:49413761-49413780 | Msa0122620:intron | 55.0% | |
| TGCACAGCATAGCAGCCCAT+AGG | + | chr1_3:49414793-49414812 | None:intergenic | 55.0% | |
| GCTGTGCAACGCCACTATAG+TGG | - | chr1_3:49414805-49414824 | Msa0122620:intron | 55.0% | |
| TCTGCAGCAGTAACTCCACC+TGG | + | chr1_3:49414983-49415002 | None:intergenic | 55.0% | |
| AGGTGGAGTTACTGCTGCAG+AGG | - | chr1_3:49414982-49415001 | Msa0122620:CDS | 55.0% | |
| GGTGGAGTTACTGCTGCAGA+GGG | - | chr1_3:49414983-49415002 | Msa0122620:CDS | 55.0% | |
| GCAGAGGGTTTCAAAGCTGC+GGG | - | chr1_3:49414998-49415017 | Msa0122620:CDS | 55.0% | |
| GGGGGAATGGCAAAAGGTTC+TGG | - | chr1_3:49416938-49416957 | Msa0122620:intron | 55.0% | |
| ! | CCAAACGTCACTGGTTACCC+CGG | + | chr1_3:49417090-49417109 | None:intergenic | 55.0% |
| TGATTCGTGCCCAAGGAACG+TGG | + | chr1_3:49418118-49418137 | None:intergenic | 55.0% | |
| CAGCAATGCGTCCCCAATTG+GGG | + | chr1_3:49418720-49418739 | None:intergenic | 55.0% | |
| GCAGCAATGCGTCCCCAATT+GGG | + | chr1_3:49418721-49418740 | None:intergenic | 55.0% | |
| AGCAGCAATGCGTCCCCAAT+TGG | + | chr1_3:49418722-49418741 | None:intergenic | 55.0% | |
| TGCTGCTGCAGCTGGTTACT+CGG | - | chr1_3:49418735-49418754 | Msa0122620:intron | 55.0% | |
| TACGAACTGTTGCAGGGGTG+AGG | - | chr1_3:49419699-49419718 | Msa0122620:intron | 55.0% | |
| AGAAAGGCTGGGGAGACTCA+CGG | - | chr1_3:49419736-49419755 | Msa0122620:intron | 55.0% | |
| CCGGTCCATTGCCTGTTAGT+AGG | + | chr1_3:49419916-49419935 | None:intergenic | 55.0% | |
| GCTTCCAAGGACCTTGGGGA+AGG | + | chr1_3:49413344-49413363 | None:intergenic | 60.0% | |
| TCCCCAAGGTCCTTGGAAGC+AGG | - | chr1_3:49413344-49413363 | Msa0122620:intron | 60.0% | |
| TATGGAGGGTTGCGCGCTGT+AGG | - | chr1_3:49415025-49415044 | Msa0122620:intron | 60.0% | |
| CAGGGCAGATTCTGCAGCAG+TGG | - | chr1_3:49416303-49416322 | Msa0122620:intron | 60.0% | |
| CCGGGGTAACCAGTGACGTT+TGG | - | chr1_3:49417087-49417106 | Msa0122620:intron | 60.0% | |
| !! | CTTTGGCCAGTGGGCTGTCT+GGG | - | chr1_3:49417491-49417510 | Msa0122620:CDS | 60.0% |
| AGGAGCGACGTGCCTCATTG+AGG | - | chr1_3:49418064-49418083 | Msa0122620:intron | 60.0% | |
| TTCGTGCCCAAGGAACGTGG+AGG | + | chr1_3:49418115-49418134 | None:intergenic | 60.0% | |
| GCTGCTGCAGCTGGTTACTC+GGG | - | chr1_3:49418736-49418755 | Msa0122620:intron | 60.0% | |
| CTGCTGCAGCTGGTTACTCG+GGG | - | chr1_3:49418737-49418756 | Msa0122620:intron | 60.0% | |
| TGCTGCAGCTGGTTACTCGG+GGG | - | chr1_3:49418738-49418757 | Msa0122620:intron | 60.0% | |
| ACCGGGCCATGGACAAGCAT+GGG | - | chr1_3:49419931-49419950 | Msa0122620:intron | 60.0% | |
| CACAGCCCCATGCTTGTCCA+TGG | + | chr1_3:49419940-49419959 | None:intergenic | 60.0% | |
| GTATGACCCGTGCGGCAGCA+CGG | - | chr1_3:49412912-49412931 | Msa0122620:intron | 65.0% | |
| TATGACCCGTGCGGCAGCAC+GGG | - | chr1_3:49412913-49412932 | Msa0122620:intron | 65.0% | |
| CTGGGGTCAAACTCGCGCAG+CGG | + | chr1_3:49414224-49414243 | None:intergenic | 65.0% | |
| CGCGGTAACCTGCTTCACCC+TGG | + | chr1_3:49415605-49415624 | None:intergenic | 65.0% | |
| !! | GCTTTGGCCAGTGGGCTGTC+TGG | - | chr1_3:49417490-49417509 | Msa0122620:CDS | 65.0% |
| GCTTAGCCCAGACAGCCCAC+TGG | + | chr1_3:49417500-49417519 | None:intergenic | 65.0% | |
| GGACGCATTGCTGCTGCAGC+TGG | - | chr1_3:49418727-49418746 | Msa0122620:intron | 65.0% | |
| ACAGGCAATGGACCGGGCCA+TGG | - | chr1_3:49419920-49419939 | Msa0122620:intron | 65.0% | |
| GACCGGGCCATGGACAAGCA+TGG | - | chr1_3:49419930-49419949 | Msa0122620:intron | 65.0% | |
| CCCCATGCTTGTCCATGGCC+CGG | + | chr1_3:49419935-49419954 | None:intergenic | 65.0% | |
| CCGGGCCATGGACAAGCATG+GGG | - | chr1_3:49419932-49419951 | Msa0122620:intron | 65.0% | |
| CTGCACCCGTGCTGCCGCAC+GGG | + | chr1_3:49412921-49412940 | None:intergenic | 75.0% | |
| CCTGCACCCGTGCTGCCGCA+CGG | + | chr1_3:49412922-49412941 | None:intergenic | 75.0% | |
| CGTGCGGCAGCACGGGTGCA+GGG | - | chr1_3:49412920-49412939 | Msa0122620:intron | 75.0% | |
| ! | CCGTGCGGCAGCACGGGTGC+AGG | - | chr1_3:49412919-49412938 | Msa0122620:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 49410275 | 49420517 | 49410275 | ID=Msa0122620;Name=Msa0122620 |
| chr1_3 | mRNA | 49410275 | 49420517 | 49410275 | ID=Msa0122620-mRNA-1;Parent=Msa0122620;Name=Msa0122620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=371|0.94|0.94|1|0.94|0.88|18|511|467 |
| chr1_3 | exon | 49410275 | 49410868 | 49410275 | ID=Msa0122620-mRNA-1:exon:14993;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49411008 | 49411078 | 49411008 | ID=Msa0122620-mRNA-1:exon:14992;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49411950 | 49412095 | 49411950 | ID=Msa0122620-mRNA-1:exon:14991;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49412175 | 49412246 | 49412175 | ID=Msa0122620-mRNA-1:exon:14990;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49412707 | 49412769 | 49412707 | ID=Msa0122620-mRNA-1:exon:14989;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49413216 | 49413338 | 49413216 | ID=Msa0122620-mRNA-1:exon:14988;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49413635 | 49413721 | 49413635 | ID=Msa0122620-mRNA-1:exon:14987;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49413798 | 49413878 | 49413798 | ID=Msa0122620-mRNA-1:exon:14986;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49414417 | 49414486 | 49414417 | ID=Msa0122620-mRNA-1:exon:14985;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49414745 | 49414803 | 49414745 | ID=Msa0122620-mRNA-1:exon:14984;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49414971 | 49415039 | 49414971 | ID=Msa0122620-mRNA-1:exon:14983;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49415136 | 49415186 | 49415136 | ID=Msa0122620-mRNA-1:exon:14982;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49415388 | 49415432 | 49415388 | ID=Msa0122620-mRNA-1:exon:14981;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49415539 | 49415612 | 49415539 | ID=Msa0122620-mRNA-1:exon:14980;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49415692 | 49415815 | 49415692 | ID=Msa0122620-mRNA-1:exon:14979;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49417427 | 49417537 | 49417427 | ID=Msa0122620-mRNA-1:exon:14978;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49417614 | 49417844 | 49417614 | ID=Msa0122620-mRNA-1:exon:14977;Parent=Msa0122620-mRNA-1 |
| chr1_3 | exon | 49420303 | 49420517 | 49420303 | ID=Msa0122620-mRNA-1:exon:14976;Parent=Msa0122620-mRNA-1 |
| chr1_3 | five_prime_UTR | 49420303 | 49420517 | 49420303 | ID=Msa0122620-mRNA-1:five_prime_utr;Parent=Msa0122620-mRNA-1 |
| chr1_3 | five_prime_UTR | 49417689 | 49417844 | 49417689 | ID=Msa0122620-mRNA-1:five_prime_utr;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49417614 | 49417688 | 49417614 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49417427 | 49417537 | 49417427 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49415692 | 49415815 | 49415692 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49415539 | 49415612 | 49415539 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49415388 | 49415432 | 49415388 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49415136 | 49415186 | 49415136 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49414971 | 49415039 | 49414971 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49414745 | 49414803 | 49414745 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49414417 | 49414486 | 49414417 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49413798 | 49413878 | 49413798 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49413635 | 49413721 | 49413635 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49413216 | 49413338 | 49413216 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49412707 | 49412769 | 49412707 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49412175 | 49412246 | 49412175 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49411950 | 49412095 | 49411950 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49411008 | 49411078 | 49411008 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | CDS | 49410786 | 49410868 | 49410786 | ID=Msa0122620-mRNA-1:cds;Parent=Msa0122620-mRNA-1 |
| chr1_3 | three_prime_UTR | 49410275 | 49410785 | 49410275 | ID=Msa0122620-mRNA-1:three_prime_utr;Parent=Msa0122620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
