Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063140 | XP_039689544.1 | 95.000 | 240 | 11 | 1 | 1 | 240 | 54 | 292 | 1.09e-166 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063140 | A0A396I0Y9 | 95.000 | 240 | 11 | 1 | 1 | 240 | 83 | 321 | 6.39e-167 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063140 | Msa0249720 | 0.837490 | 5.039533e-57 | -8.615850e-47 |
| Msa0063140 | Msa0660560 | 0.830662 | 2.588693e-55 | -8.615850e-47 |
| Msa0063140 | Msa1392380 | 0.821899 | 3.159180e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0063140 | MtrunA17_Chr4g0002051 | 95.000 | 240 | 11 | 1 | 1 | 240 | 83 | 321 | 1.23e-170 | 473 |
| Msa0063140 | MtrunA17_Chr8g0381471 | 94.915 | 177 | 9 | 0 | 64 | 240 | 1 | 177 | 4.51e-125 | 352 |
| Msa0063140 | MtrunA17_Chr2g0287671 | 31.559 | 263 | 136 | 10 | 12 | 240 | 183 | 435 | 4.21e-29 | 113 |
| Msa0063140 | MtrunA17_Chr8g0361701 | 37.063 | 143 | 82 | 3 | 50 | 192 | 108 | 242 | 4.57e-24 | 96.7 |
| Msa0063140 | MtrunA17_Chr8g0349211 | 32.990 | 97 | 60 | 2 | 59 | 151 | 9 | 104 | 1.04e-13 | 65.9 |
| Msa0063140 | MtrunA17_Chr7g0225291 | 27.189 | 217 | 144 | 10 | 12 | 222 | 317 | 525 | 4.63e-11 | 62.0 |
| Msa0063140 | MtrunA17_Chr5g0406671 | 22.727 | 220 | 151 | 7 | 12 | 222 | 271 | 480 | 5.30e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATACCATAACAAGTTTA+TGG | 0.178722 | 1_2:+23317581 | Msa0063140:CDS |
| CCTAGTCACTCCGAATGATT+TGG | 0.276768 | 1_2:+23318029 | Msa0063140:CDS |
| TTAGAAATGATTGTGGAATA+TGG | 0.297293 | 1_2:+23318138 | Msa0063140:intron |
| GATAGCATTGGATTTGATAT+TGG | 0.305750 | 1_2:+23318315 | Msa0063140:CDS |
| TCTCTTGTTCCTTCACAGTA+TGG | 0.328040 | 1_2:-23316390 | None:intergenic |
| GTGAGTTTGTACCGAGAAAA+TGG | 0.351582 | 1_2:-23317421 | None:intergenic |
| TTGGCTTTAGGCTTTGTATA+TGG | 0.351595 | 1_2:+23317936 | Msa0063140:intron |
| AAATACCATAACAAGTTTAT+GGG | 0.365331 | 1_2:+23317582 | Msa0063140:CDS |
| ATAAAGTGGATGATGGAAAA+AGG | 0.383841 | 1_2:+23318164 | Msa0063140:CDS |
| AGGTCCCCATAAACTTGTTA+TGG | 0.415010 | 1_2:-23317587 | None:intergenic |
| CGGAGTGACTAGGCTAAATT+CGG | 0.418219 | 1_2:-23318019 | None:intergenic |
| GTCTCATTCAATAAGTTTGA+AGG | 0.422134 | 1_2:-23318340 | None:intergenic |
| CTAGTCACTCCGAATGATTT+GGG | 0.432092 | 1_2:+23318030 | Msa0063140:CDS |
| GATGCGAAGCATTAAGAAAC+TGG | 0.441723 | 1_2:+23317826 | Msa0063140:CDS |
| AGGCTAAATTCGGATATGTT+CGG | 0.457136 | 1_2:-23318009 | None:intergenic |
| GTCATTCAGCCCGTGCTGAC+AGG | 0.457526 | 1_2:+23317804 | Msa0063140:CDS |
| GCCTGCATTCCCAAATCATT+CGG | 0.464260 | 1_2:-23318039 | None:intergenic |
| CTTATTGAATGAGACAACTT+TGG | 0.469819 | 1_2:+23318348 | Msa0063140:CDS |
| TCCGAATGATTTGGGAATGC+AGG | 0.472595 | 1_2:+23318038 | Msa0063140:CDS |
| TACCTTTGAAATCTTATCAA+AGG | 0.474112 | 1_2:-23317607 | None:intergenic |
| TTCAATGTTAGAAATGATTG+TGG | 0.501058 | 1_2:+23318131 | Msa0063140:intron |
| ATGGGTCATAAAGTGGATGA+TGG | 0.508546 | 1_2:+23318157 | Msa0063140:CDS |
| TCAGCACGGGCTGAATGACT+TGG | 0.509750 | 1_2:-23317800 | None:intergenic |
| CATAGCAATATGTGCTAGCA+TGG | 0.509859 | 1_2:+23317532 | Msa0063140:intron |
| TCTTGGTCAAGCATTTCTCT+AGG | 0.517758 | 1_2:-23316432 | None:intergenic |
| AAAATAAGATTACTACGTCT+TGG | 0.519892 | 1_2:-23316449 | None:intergenic |
| TAGAAATGATTGTGGAATAT+GGG | 0.525753 | 1_2:+23318139 | Msa0063140:intron |
| GACCTTTGATAAGATTTCAA+AGG | 0.535769 | 1_2:+23317605 | Msa0063140:CDS |
| CCAAATCATTCGGAGTGACT+AGG | 0.536951 | 1_2:-23318029 | None:intergenic |
| GCAATATGTGCTAGCATGGA+AGG | 0.544363 | 1_2:+23317536 | Msa0063140:intron |
| TACAAGACTCAGGATAGCAT+TGG | 0.545324 | 1_2:+23318303 | Msa0063140:CDS |
| TGTCAAAGTCGATCACAAGC+AGG | 0.547083 | 1_2:-23317748 | None:intergenic |
| TGCTTCGCATCCTGTCAGCA+CGG | 0.548361 | 1_2:-23317814 | None:intergenic |
| GTGGAATATGGGTCATAAAG+TGG | 0.551770 | 1_2:+23318150 | Msa0063140:CDS |
| GCTTCGCATCCTGTCAGCAC+GGG | 0.553266 | 1_2:-23317813 | None:intergenic |
| TATATGTTATAGGTTGATGA+AGG | 0.572157 | 1_2:+23318280 | Msa0063140:intron |
| TTGATGAAGGTACAAGACTC+AGG | 0.574689 | 1_2:+23318293 | Msa0063140:CDS |
| TGGCAGTTGCAAATCAGTCA+AGG | 0.603724 | 1_2:+23318368 | Msa0063140:CDS |
| AATACCATAACAAGTTTATG+GGG | 0.611042 | 1_2:+23317583 | Msa0063140:CDS |
| GTATATGGAAGAGTTCCTCA+TGG | 0.622722 | 1_2:+23317951 | Msa0063140:CDS |
| GAGCATTCAGAATCATGCAC+TGG | 0.624661 | 1_2:-23317716 | None:intergenic |
| ATGATTCTGAATGCTCACAT+TGG | 0.634837 | 1_2:+23317723 | Msa0063140:CDS |
| TCAGACATACCATACTGTGA+AGG | 0.650977 | 1_2:+23316381 | Msa0063140:CDS |
| AGTTGCAAATCAGTCAAGGA+GGG | 0.665111 | 1_2:+23318372 | Msa0063140:CDS |
| GTTTGTACCGAGAAAATGGT+CGG | 0.671456 | 1_2:-23317417 | None:intergenic |
| CAGTTGCAAATCAGTCAAGG+AGG | 0.678242 | 1_2:+23318371 | Msa0063140:CDS |
| ATACTGTGAAGGAACAAGAG+AGG | 0.703777 | 1_2:+23316392 | Msa0063140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTA+TGG | + | chr1_2:23316596-23316615 | Msa0063140:intron | 0.0% |
| !! | ATATATATATATATATATTA+TGG | + | chr1_2:23316596-23316615 | Msa0063140:intron | 0.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | - | chr1_2:23317461-23317480 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | - | chr1_2:23317863-23317882 | None:intergenic | 10.0% |
| !! | AAATATGATATATATGTTAT+AGG | + | chr1_2:23318270-23318289 | Msa0063140:intron | 10.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | - | chr1_2:23317461-23317480 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | - | chr1_2:23317863-23317882 | None:intergenic | 10.0% |
| !! | AAATATGATATATATGTTAT+AGG | + | chr1_2:23318270-23318289 | Msa0063140:intron | 10.0% |
| !!! | TATTTTGAATATGCATATTA+TGG | + | chr1_2:23316933-23316952 | Msa0063140:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | + | chr1_2:23317070-23317089 | Msa0063140:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | - | chr1_2:23317898-23317917 | None:intergenic | 15.0% |
| !!! | TATTTTGAATATGCATATTA+TGG | + | chr1_2:23316933-23316952 | Msa0063140:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | + | chr1_2:23317070-23317089 | Msa0063140:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | - | chr1_2:23317898-23317917 | None:intergenic | 15.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | - | chr1_2:23316490-23316509 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | + | chr1_2:23316643-23316662 | Msa0063140:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | - | chr1_2:23316973-23316992 | None:intergenic | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | + | chr1_2:23317581-23317600 | Msa0063140:CDS | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | + | chr1_2:23317582-23317601 | Msa0063140:CDS | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | - | chr1_2:23317682-23317701 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | - | chr1_2:23317891-23317910 | None:intergenic | 20.0% |
| !! | AAATACAAAAGCAATTGAAA+AGG | - | chr1_2:23318225-23318244 | None:intergenic | 20.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | - | chr1_2:23316490-23316509 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | + | chr1_2:23316643-23316662 | Msa0063140:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | - | chr1_2:23316973-23316992 | None:intergenic | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | + | chr1_2:23317581-23317600 | Msa0063140:CDS | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | + | chr1_2:23317582-23317601 | Msa0063140:CDS | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | - | chr1_2:23317682-23317701 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | - | chr1_2:23317891-23317910 | None:intergenic | 20.0% |
| !! | AAATACAAAAGCAATTGAAA+AGG | - | chr1_2:23318225-23318244 | None:intergenic | 20.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | - | chr1_2:23316452-23316471 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | + | chr1_2:23316525-23316544 | Msa0063140:intron | 25.0% |
| !!! | TGTTGCTTTGAAAACTAATA+AGG | + | chr1_2:23317055-23317074 | Msa0063140:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | - | chr1_2:23317130-23317149 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | - | chr1_2:23317188-23317207 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | + | chr1_2:23317185-23317204 | Msa0063140:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | + | chr1_2:23317203-23317222 | Msa0063140:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | + | chr1_2:23317583-23317602 | Msa0063140:CDS | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | - | chr1_2:23317610-23317629 | None:intergenic | 25.0% |
| ! | TTCAATGTTAGAAATGATTG+TGG | + | chr1_2:23318131-23318150 | Msa0063140:intron | 25.0% |
| ! | TTAGAAATGATTGTGGAATA+TGG | + | chr1_2:23318138-23318157 | Msa0063140:intron | 25.0% |
| ! | TAGAAATGATTGTGGAATAT+GGG | + | chr1_2:23318139-23318158 | Msa0063140:intron | 25.0% |
| !!! | TATATGTTATAGGTTGATGA+AGG | + | chr1_2:23318280-23318299 | Msa0063140:intron | 25.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | - | chr1_2:23316452-23316471 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | + | chr1_2:23316525-23316544 | Msa0063140:intron | 25.0% |
| !!! | TGTTGCTTTGAAAACTAATA+AGG | + | chr1_2:23317055-23317074 | Msa0063140:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | - | chr1_2:23317130-23317149 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | - | chr1_2:23317188-23317207 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | + | chr1_2:23317185-23317204 | Msa0063140:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | + | chr1_2:23317203-23317222 | Msa0063140:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | + | chr1_2:23317583-23317602 | Msa0063140:CDS | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | - | chr1_2:23317610-23317629 | None:intergenic | 25.0% |
| ! | TTCAATGTTAGAAATGATTG+TGG | + | chr1_2:23318131-23318150 | Msa0063140:intron | 25.0% |
| ! | TTAGAAATGATTGTGGAATA+TGG | + | chr1_2:23318138-23318157 | Msa0063140:intron | 25.0% |
| ! | TAGAAATGATTGTGGAATAT+GGG | + | chr1_2:23318139-23318158 | Msa0063140:intron | 25.0% |
| !!! | TATATGTTATAGGTTGATGA+AGG | + | chr1_2:23318280-23318299 | Msa0063140:intron | 25.0% |
| ACTGTCATCATGATTTAGTT+AGG | + | chr1_2:23316855-23316874 | Msa0063140:intron | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | - | chr1_2:23317276-23317295 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | + | chr1_2:23317274-23317293 | Msa0063140:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | + | chr1_2:23317381-23317400 | Msa0063140:CDS | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | + | chr1_2:23317388-23317407 | Msa0063140:CDS | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | + | chr1_2:23317605-23317624 | Msa0063140:CDS | 30.0% | |
| ATATCACTGACAAACATTGT+TGG | + | chr1_2:23317917-23317936 | Msa0063140:intron | 30.0% | |
| ! | ACTCCTCTTTTTATATGACT+TGG | + | chr1_2:23317974-23317993 | Msa0063140:CDS | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | - | chr1_2:23317980-23317999 | None:intergenic | 30.0% | |
| !! | ATAAAGTGGATGATGGAAAA+AGG | + | chr1_2:23318164-23318183 | Msa0063140:CDS | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | + | chr1_2:23318315-23318334 | Msa0063140:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | - | chr1_2:23318343-23318362 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | + | chr1_2:23318348-23318367 | Msa0063140:CDS | 30.0% | |
| ACTGTCATCATGATTTAGTT+AGG | + | chr1_2:23316855-23316874 | Msa0063140:intron | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | - | chr1_2:23317276-23317295 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | + | chr1_2:23317274-23317293 | Msa0063140:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | + | chr1_2:23317381-23317400 | Msa0063140:CDS | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | + | chr1_2:23317388-23317407 | Msa0063140:CDS | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | + | chr1_2:23317605-23317624 | Msa0063140:CDS | 30.0% | |
| ATATCACTGACAAACATTGT+TGG | + | chr1_2:23317917-23317936 | Msa0063140:intron | 30.0% | |
| ! | ACTCCTCTTTTTATATGACT+TGG | + | chr1_2:23317974-23317993 | Msa0063140:CDS | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | - | chr1_2:23317980-23317999 | None:intergenic | 30.0% | |
| !! | ATAAAGTGGATGATGGAAAA+AGG | + | chr1_2:23318164-23318183 | Msa0063140:CDS | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | + | chr1_2:23318315-23318334 | Msa0063140:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | - | chr1_2:23318343-23318362 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | + | chr1_2:23318348-23318367 | Msa0063140:CDS | 30.0% | |
| TAGAAACTGAGACCATATAC+AGG | - | chr1_2:23316540-23316559 | None:intergenic | 35.0% | |
| ATGACAATGCAGATGAAACA+AGG | + | chr1_2:23316628-23316647 | Msa0063140:intron | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | + | chr1_2:23316710-23316729 | Msa0063140:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | + | chr1_2:23317161-23317180 | Msa0063140:intron | 35.0% | |
| ACAATATCATTACACGACAC+AGG | + | chr1_2:23317639-23317658 | Msa0063140:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | + | chr1_2:23317723-23317742 | Msa0063140:CDS | 35.0% | |
| !! | TGACAAACATTGTTGGCTTT+AGG | + | chr1_2:23317924-23317943 | Msa0063140:intron | 35.0% |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | + | chr1_2:23317936-23317955 | Msa0063140:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | - | chr1_2:23317969-23317988 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | - | chr1_2:23318012-23318031 | None:intergenic | 35.0% | |
| TAGAAACTGAGACCATATAC+AGG | - | chr1_2:23316540-23316559 | None:intergenic | 35.0% | |
| ATGACAATGCAGATGAAACA+AGG | + | chr1_2:23316628-23316647 | Msa0063140:intron | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | + | chr1_2:23316710-23316729 | Msa0063140:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | + | chr1_2:23317161-23317180 | Msa0063140:intron | 35.0% | |
| ACAATATCATTACACGACAC+AGG | + | chr1_2:23317639-23317658 | Msa0063140:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | + | chr1_2:23317723-23317742 | Msa0063140:CDS | 35.0% | |
| !! | TGACAAACATTGTTGGCTTT+AGG | + | chr1_2:23317924-23317943 | Msa0063140:intron | 35.0% |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | + | chr1_2:23317936-23317955 | Msa0063140:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | - | chr1_2:23317969-23317988 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | - | chr1_2:23318012-23318031 | None:intergenic | 35.0% | |
| TCAGACATACCATACTGTGA+AGG | + | chr1_2:23316381-23316400 | Msa0063140:CDS | 40.0% | |
| TCTCTTGTTCCTTCACAGTA+TGG | - | chr1_2:23316393-23316412 | None:intergenic | 40.0% | |
| ATACTGTGAAGGAACAAGAG+AGG | + | chr1_2:23316392-23316411 | Msa0063140:CDS | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | - | chr1_2:23316435-23316454 | None:intergenic | 40.0% | |
| TGCCAACGAGTTTCATGATT+CGG | - | chr1_2:23316704-23316723 | None:intergenic | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | + | chr1_2:23317410-23317429 | Msa0063140:CDS | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | - | chr1_2:23317420-23317439 | None:intergenic | 40.0% | |
| GTGAGTTTGTACCGAGAAAA+TGG | - | chr1_2:23317424-23317443 | None:intergenic | 40.0% | |
| CATAGCAATATGTGCTAGCA+TGG | + | chr1_2:23317532-23317551 | Msa0063140:intron | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | - | chr1_2:23317590-23317609 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | + | chr1_2:23317826-23317845 | Msa0063140:CDS | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | + | chr1_2:23317951-23317970 | Msa0063140:CDS | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | + | chr1_2:23318030-23318049 | Msa0063140:CDS | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | + | chr1_2:23318150-23318169 | Msa0063140:CDS | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | + | chr1_2:23318157-23318176 | Msa0063140:CDS | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | + | chr1_2:23318293-23318312 | Msa0063140:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | + | chr1_2:23318303-23318322 | Msa0063140:CDS | 40.0% | |
| AGTTGCAAATCAGTCAAGGA+GGG | + | chr1_2:23318372-23318391 | Msa0063140:CDS | 40.0% | |
| TCAGACATACCATACTGTGA+AGG | + | chr1_2:23316381-23316400 | Msa0063140:CDS | 40.0% | |
| TCTCTTGTTCCTTCACAGTA+TGG | - | chr1_2:23316393-23316412 | None:intergenic | 40.0% | |
| ATACTGTGAAGGAACAAGAG+AGG | + | chr1_2:23316392-23316411 | Msa0063140:CDS | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | - | chr1_2:23316435-23316454 | None:intergenic | 40.0% | |
| TGCCAACGAGTTTCATGATT+CGG | - | chr1_2:23316704-23316723 | None:intergenic | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | + | chr1_2:23317410-23317429 | Msa0063140:CDS | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | - | chr1_2:23317420-23317439 | None:intergenic | 40.0% | |
| GTGAGTTTGTACCGAGAAAA+TGG | - | chr1_2:23317424-23317443 | None:intergenic | 40.0% | |
| CATAGCAATATGTGCTAGCA+TGG | + | chr1_2:23317532-23317551 | Msa0063140:intron | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | - | chr1_2:23317590-23317609 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | + | chr1_2:23317826-23317845 | Msa0063140:CDS | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | + | chr1_2:23317951-23317970 | Msa0063140:CDS | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | + | chr1_2:23318030-23318049 | Msa0063140:CDS | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | + | chr1_2:23318150-23318169 | Msa0063140:CDS | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | + | chr1_2:23318157-23318176 | Msa0063140:CDS | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | + | chr1_2:23318293-23318312 | Msa0063140:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | + | chr1_2:23318303-23318322 | Msa0063140:CDS | 40.0% | |
| AGTTGCAAATCAGTCAAGGA+GGG | + | chr1_2:23318372-23318391 | Msa0063140:CDS | 40.0% | |
| GTCCGAATCATGAAACTCGT+TGG | + | chr1_2:23316699-23316718 | Msa0063140:intron | 45.0% | |
| GCAATATGTGCTAGCATGGA+AGG | + | chr1_2:23317536-23317555 | Msa0063140:intron | 45.0% | |
| GAGCATTCAGAATCATGCAC+TGG | - | chr1_2:23317719-23317738 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | - | chr1_2:23317751-23317770 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | - | chr1_2:23318022-23318041 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | - | chr1_2:23318032-23318051 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | + | chr1_2:23318029-23318048 | Msa0063140:CDS | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | + | chr1_2:23318038-23318057 | Msa0063140:CDS | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | - | chr1_2:23318042-23318061 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAATCAGTCA+AGG | + | chr1_2:23318368-23318387 | Msa0063140:CDS | 45.0% | |
| CAGTTGCAAATCAGTCAAGG+AGG | + | chr1_2:23318371-23318390 | Msa0063140:CDS | 45.0% | |
| GTCCGAATCATGAAACTCGT+TGG | + | chr1_2:23316699-23316718 | Msa0063140:intron | 45.0% | |
| GCAATATGTGCTAGCATGGA+AGG | + | chr1_2:23317536-23317555 | Msa0063140:intron | 45.0% | |
| GAGCATTCAGAATCATGCAC+TGG | - | chr1_2:23317719-23317738 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | - | chr1_2:23317751-23317770 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | - | chr1_2:23318022-23318041 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | - | chr1_2:23318032-23318051 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | + | chr1_2:23318029-23318048 | Msa0063140:CDS | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | + | chr1_2:23318038-23318057 | Msa0063140:CDS | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | - | chr1_2:23318042-23318061 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAATCAGTCA+AGG | + | chr1_2:23318368-23318387 | Msa0063140:CDS | 45.0% | |
| CAGTTGCAAATCAGTCAAGG+AGG | + | chr1_2:23318371-23318390 | Msa0063140:CDS | 45.0% | |
| ! | TCAGCACGGGCTGAATGACT+TGG | - | chr1_2:23317803-23317822 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | - | chr1_2:23317817-23317836 | None:intergenic | 55.0% | |
| ! | TCAGCACGGGCTGAATGACT+TGG | - | chr1_2:23317803-23317822 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | - | chr1_2:23317817-23317836 | None:intergenic | 55.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | + | chr1_2:23317804-23317823 | Msa0063140:CDS | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | - | chr1_2:23317816-23317835 | None:intergenic | 60.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | + | chr1_2:23317804-23317823 | Msa0063140:CDS | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | - | chr1_2:23317816-23317835 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 23316369 | 23318411 | 23316369 | ID=Msa0063140;Name=Msa0063140 |
| chr1_2 | mRNA | 23316369 | 23318411 | 23316369 | ID=Msa0063140-mRNA-1;Parent=Msa0063140;Name=Msa0063140-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|0.85|7|0|240 |
| chr1_2 | exon | 23316369 | 23316458 | 23316369 | ID=Msa0063140-mRNA-1:exon:8491;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23317342 | 23317431 | 23317342 | ID=Msa0063140-mRNA-1:exon:8492;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23317537 | 23317626 | 23317537 | ID=Msa0063140-mRNA-1:exon:8493;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23317707 | 23317847 | 23317707 | ID=Msa0063140-mRNA-1:exon:8494;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23317946 | 23318070 | 23317946 | ID=Msa0063140-mRNA-1:exon:8495;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23318142 | 23318208 | 23318142 | ID=Msa0063140-mRNA-1:exon:8496;Parent=Msa0063140-mRNA-1 |
| chr1_2 | exon | 23318292 | 23318411 | 23318292 | ID=Msa0063140-mRNA-1:exon:8497;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23316369 | 23316458 | 23316369 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23317342 | 23317431 | 23317342 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23317537 | 23317626 | 23317537 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23317707 | 23317847 | 23317707 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23317946 | 23318070 | 23317946 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23318142 | 23318208 | 23318142 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| chr1_2 | CDS | 23318292 | 23318411 | 23318292 | ID=Msa0063140-mRNA-1:cds;Parent=Msa0063140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
