Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660560 | KEH28584.1 | 92.521 | 361 | 26 | 1 | 17 | 377 | 1 | 360 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063140 | Msa0660560 | 0.830662 | 2.588693e-55 | -8.615850e-47 |
| Msa0660560 | Msa1392380 | 0.936902 | 8.246632e-98 | -8.615850e-47 |
| Msa0461160 | Msa0660560 | 0.802968 | 4.361850e-49 | -8.615850e-47 |
| Msa0249720 | Msa0660560 | 0.972393 | 1.081359e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660560 | MtrunA17_Chr4g0002051 | 83.758 | 314 | 17 | 2 | 97 | 377 | 9 | 321 | 0.0 | 531 |
| Msa0660560 | MtrunA17_Chr8g0381471 | 95.480 | 177 | 8 | 0 | 201 | 377 | 1 | 177 | 5.25e-125 | 357 |
| Msa0660560 | MtrunA17_Chr4g0002061 | 86.000 | 100 | 14 | 0 | 1 | 100 | 14 | 113 | 4.38e-57 | 182 |
| Msa0660560 | MtrunA17_Chr2g0287671 | 33.852 | 257 | 138 | 12 | 149 | 377 | 183 | 435 | 1.83e-29 | 118 |
| Msa0660560 | MtrunA17_Chr8g0361701 | 37.762 | 143 | 81 | 3 | 187 | 329 | 108 | 242 | 8.73e-24 | 99.0 |
| Msa0660560 | MtrunA17_Chr8g0349211 | 32.990 | 97 | 60 | 2 | 196 | 288 | 9 | 104 | 4.84e-14 | 68.6 |
| Msa0660560 | MtrunA17_Chr7g0225291 | 28.111 | 217 | 142 | 10 | 149 | 359 | 317 | 525 | 9.86e-13 | 69.3 |
| Msa0660560 | MtrunA17_Chr5g0406671 | 22.897 | 214 | 158 | 6 | 149 | 359 | 271 | 480 | 1.15e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATACCATAACAAGTTTA+TGG | 0.178722 | 4_3:+71451196 | Msa0660560:CDS |
| CCTAGTCACTCCGAATGATT+TGG | 0.276768 | 4_3:+71451642 | Msa0660560:CDS |
| GATAGCATTGGATTTGATAT+TGG | 0.305750 | 4_3:+71451928 | Msa0660560:CDS |
| TTAGGAATGATTGTGGAATA+TGG | 0.306351 | 4_3:+71451751 | Msa0660560:intron |
| TTACTTACACTAGGAATAAA+AGG | 0.320416 | 4_3:-71449564 | None:intergenic |
| TCTCTTGTTCCTTCACAGTA+TGG | 0.328040 | 4_3:-71449888 | None:intergenic |
| CAGTGAAGAAGACATAAATA+TGG | 0.342237 | 4_3:+71449114 | Msa0660560:intron |
| GTGAGTTTGTACCGAGAAAA+TGG | 0.351582 | 4_3:-71451036 | None:intergenic |
| TTGGCTTTAGGCTTTGTATA+TGG | 0.351595 | 4_3:+71451549 | Msa0660560:intron |
| GTCGTAGCCAGCACTCCAAC+TGG | 0.353438 | 4_3:+71449489 | Msa0660560:CDS |
| GAAAAGAAATATTTGAAGAT+TGG | 0.359106 | 4_3:+71449149 | Msa0660560:CDS |
| AAATACCATAACAAGTTTAT+GGG | 0.365331 | 4_3:+71451197 | Msa0660560:CDS |
| CATTGCAAACCTCCGTTTGT+CGG | 0.414521 | 4_3:-71447639 | None:intergenic |
| AGGTCCCCATAAACTTGTTA+TGG | 0.415010 | 4_3:-71451202 | None:intergenic |
| CGGAGTGACTAGGCTAAATT+CGG | 0.418219 | 4_3:-71451632 | None:intergenic |
| GTCTCATTCAATAAGTTTGA+AGG | 0.422134 | 4_3:-71451953 | None:intergenic |
| TGAAATAAAACGCCGACAAA+CGG | 0.424735 | 4_3:+71447627 | Msa0660560:CDS |
| CTAGTCACTCCGAATGATTT+GGG | 0.432092 | 4_3:+71451643 | Msa0660560:CDS |
| GATGCGAAGCATTAAGAAAC+TGG | 0.441723 | 4_3:+71451439 | Msa0660560:CDS |
| TTGTGGATTTGGTACCAGAT+AGG | 0.443107 | 4_3:+71447722 | Msa0660560:CDS |
| AGGCTAAATTCGGATATGTT+CGG | 0.457136 | 4_3:-71451622 | None:intergenic |
| GTCATTCAGCCCGTGCTGAC+AGG | 0.457526 | 4_3:+71451417 | Msa0660560:CDS |
| GGCTAAGATGGAGCTATCCT+TGG | 0.458948 | 4_3:+71449299 | Msa0660560:CDS |
| AAAACAAAGGATGGCTAAGA+TGG | 0.462193 | 4_3:+71449287 | Msa0660560:CDS |
| GCCTGCATTCCCAAATCATT+CGG | 0.464260 | 4_3:-71451652 | None:intergenic |
| TCTATCATAGCAATATGTTC+TGG | 0.467480 | 4_3:+71451142 | Msa0660560:intron |
| CTTATTGAATGAGACAACTT+TGG | 0.469819 | 4_3:+71451961 | Msa0660560:CDS |
| TCCGAATGATTTGGGAATGC+AGG | 0.472595 | 4_3:+71451651 | Msa0660560:CDS |
| TACCTTTGAAATCTTATCAA+AGG | 0.474112 | 4_3:-71451222 | None:intergenic |
| GTAGAACCCAGTTGGAGTGC+TGG | 0.478262 | 4_3:-71449496 | None:intergenic |
| ATAATTTACTGTGAGTGTCT+TGG | 0.481255 | 4_3:-71449536 | None:intergenic |
| TTCAATGTTAGGAATGATTG+TGG | 0.482902 | 4_3:+71451744 | Msa0660560:intron |
| TCTGGTACCAAATCCACAAA+AGG | 0.506332 | 4_3:-71447718 | None:intergenic |
| ATGGGTCATAAAGTGGATGA+TGG | 0.508546 | 4_3:+71451770 | Msa0660560:CDS |
| TCAGCACGGGCTGAATGACT+TGG | 0.509750 | 4_3:-71451413 | None:intergenic |
| TCTTGGTCAAGCATTTCTCT+AGG | 0.517758 | 4_3:-71449930 | None:intergenic |
| AAAATAAGATTACTACGTCT+TGG | 0.519892 | 4_3:-71449947 | None:intergenic |
| TTGACACTAGACATCGGAAC+TGG | 0.520973 | 4_3:-71449360 | None:intergenic |
| TATCCCTTTGATCTCTTCCA+AGG | 0.525111 | 4_3:-71449316 | None:intergenic |
| CATAAATATGGATTCCAACA+AGG | 0.526400 | 4_3:+71449126 | Msa0660560:CDS |
| TATCCTTGGAAGAGATCAAA+GGG | 0.526992 | 4_3:+71449313 | Msa0660560:CDS |
| ATTACCTCATGTTCACATGT+TGG | 0.530470 | 4_3:-71449175 | None:intergenic |
| GACACTCACAGTAAATTATG+TGG | 0.534907 | 4_3:+71449540 | Msa0660560:CDS |
| GACCTTTGATAAGATTTCAA+AGG | 0.535769 | 4_3:+71451220 | Msa0660560:CDS |
| CCAAATCATTCGGAGTGACT+AGG | 0.536951 | 4_3:-71451642 | None:intergenic |
| TACAAGACTCAGGATAGCAT+TGG | 0.545324 | 4_3:+71451916 | Msa0660560:CDS |
| GCAATATGTTCTGGCATGGA+AGG | 0.545775 | 4_3:+71451151 | Msa0660560:intron |
| TAGGAATGATTGTGGAATAT+GGG | 0.546242 | 4_3:+71451752 | Msa0660560:intron |
| TGTCAAAGTCGATCACAAGC+AGG | 0.547083 | 4_3:-71451361 | None:intergenic |
| TGCTTCGCATCCTGTCAGCA+CGG | 0.548361 | 4_3:-71451427 | None:intergenic |
| GTGGAATATGGGTCATAAAG+TGG | 0.551770 | 4_3:+71451763 | Msa0660560:CDS |
| GCTTCGCATCCTGTCAGCAC+GGG | 0.553266 | 4_3:-71451426 | None:intergenic |
| CATAGCAATATGTTCTGGCA+TGG | 0.557578 | 4_3:+71451147 | Msa0660560:intron |
| TGTATGTTATAGGTTGATGA+AGG | 0.572157 | 4_3:+71451893 | Msa0660560:intron |
| GATCTAATGTAGAACCCAGT+TGG | 0.573469 | 4_3:-71449504 | None:intergenic |
| TTGATGAAGGTACAAGACTC+AGG | 0.574689 | 4_3:+71451906 | Msa0660560:CDS |
| CTATCCTTGGAAGAGATCAA+AGG | 0.582658 | 4_3:+71449312 | Msa0660560:CDS |
| ATAAATATGGATTCCAACAA+GGG | 0.583084 | 4_3:+71449127 | Msa0660560:CDS |
| TGGCAGTTGCAAAACAGTCA+AGG | 0.585684 | 4_3:+71451981 | Msa0660560:CDS |
| ATAAAGTGGATGATGGAAAG+AGG | 0.602413 | 4_3:+71451777 | Msa0660560:CDS |
| TCGTAGCCAGCACTCCAACT+GGG | 0.605063 | 4_3:+71449490 | Msa0660560:CDS |
| ACAGGAGCTAAAACAAAGGA+TGG | 0.609797 | 4_3:+71449278 | Msa0660560:intron |
| TCGGAACTGGTTGGTGTGTG+AGG | 0.609902 | 4_3:-71449347 | None:intergenic |
| GGCATGGAAGGCACAAACAC+AGG | 0.610947 | 4_3:+71451163 | Msa0660560:CDS |
| AATACCATAACAAGTTTATG+GGG | 0.611042 | 4_3:+71451198 | Msa0660560:CDS |
| CACTAGACATCGGAACTGGT+TGG | 0.615732 | 4_3:-71449356 | None:intergenic |
| GGAGTGCTGGCTACGACAAG+AGG | 0.618013 | 4_3:-71449483 | None:intergenic |
| GAATCCAACATGTGAACATG+AGG | 0.618024 | 4_3:+71449171 | Msa0660560:CDS |
| GTATATGGAAGAGTTCCTCA+TGG | 0.622722 | 4_3:+71451564 | Msa0660560:CDS |
| GAGCATTCAGAATCATGCAC+TGG | 0.624661 | 4_3:-71451329 | None:intergenic |
| GTGAACAGGAGCTAAAACAA+AGG | 0.629847 | 4_3:+71449274 | Msa0660560:intron |
| AATAAAACGCCGACAAACGG+AGG | 0.630467 | 4_3:+71447630 | Msa0660560:CDS |
| ATGATTCTGAATGCTCACAT+TGG | 0.634837 | 4_3:+71451336 | Msa0660560:CDS |
| CGACAAACGGAGGTTTGCAA+TGG | 0.641886 | 4_3:+71447640 | Msa0660560:CDS |
| TCAGACATACCATACTGTGA+AGG | 0.650977 | 4_3:+71449879 | Msa0660560:CDS |
| AGTTGCAAAACAGTCAAGGA+GGG | 0.665111 | 4_3:+71451985 | Msa0660560:CDS |
| GTTTGTACCGAGAAAATGGT+CGG | 0.671456 | 4_3:-71451032 | None:intergenic |
| CAGTTGCAAAACAGTCAAGG+AGG | 0.684092 | 4_3:+71451984 | Msa0660560:CDS |
| ATACTGTGAAGGAACAAGAG+AGG | 0.703777 | 4_3:+71449890 | Msa0660560:CDS |
| TCAGCATTGACACTAGACAT+CGG | 0.708624 | 4_3:-71449366 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr4_3:71450066-71450085 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATTA+TGG | + | chr4_3:71450125-71450144 | Msa0660560:intron | 0.0% |
| !!! | TCATTTTATATTTTAAATTG+CGG | + | chr4_3:71448444-71448463 | Msa0660560:intron | 10.0% |
| !!! | ATTATTATTATTTCTTTCAT+TGG | + | chr4_3:71448832-71448851 | Msa0660560:intron | 10.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | - | chr4_3:71451076-71451095 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | - | chr4_3:71451476-71451495 | None:intergenic | 10.0% |
| !! | ATTATCAAATATATATGAAC+TGG | - | chr4_3:71448695-71448714 | None:intergenic | 15.0% |
| !!! | TATTTTGAATATGCATATTA+TGG | + | chr4_3:71450548-71450567 | Msa0660560:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | + | chr4_3:71450685-71450704 | Msa0660560:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | - | chr4_3:71451511-71451530 | None:intergenic | 15.0% |
| !! | AAATATGATATGTATGTTAT+AGG | + | chr4_3:71451883-71451902 | Msa0660560:intron | 15.0% |
| !! | ACAAACAAATCACAATTATA+AGG | - | chr4_3:71447761-71447780 | None:intergenic | 20.0% |
| !! | AGAAGATAAATCAGTATATT+TGG | - | chr4_3:71447859-71447878 | None:intergenic | 20.0% |
| !! | AAGTTCTTGTAATATAAGTT+GGG | - | chr4_3:71447929-71447948 | None:intergenic | 20.0% |
| !! | AAAGTTCTTGTAATATAAGT+TGG | - | chr4_3:71447930-71447949 | None:intergenic | 20.0% |
| !! | ATATTACAAGAACTTTGTAA+TGG | + | chr4_3:71448039-71448058 | Msa0660560:intron | 20.0% |
| !! | TGCTTATATATTATAAACTG+CGG | + | chr4_3:71448082-71448101 | Msa0660560:intron | 20.0% |
| !!! | ATAAACAGTAATTTAAGTTG+CGG | - | chr4_3:71448475-71448494 | None:intergenic | 20.0% |
| !!! | TTCTTTCATTGGTTTTTATT+TGG | + | chr4_3:71448843-71448862 | Msa0660560:intron | 20.0% |
| !! | AGAAAAAAGAGCTAAAAAAT+AGG | - | chr4_3:71448983-71449002 | None:intergenic | 20.0% |
| !! | GAAAAGAAATATTTGAAGAT+TGG | + | chr4_3:71449149-71449168 | Msa0660560:CDS | 20.0% |
| !! | ATTTGTAGTATCAATTCATA+CGG | + | chr4_3:71449200-71449219 | Msa0660560:intron | 20.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | - | chr4_3:71449988-71450007 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | + | chr4_3:71450173-71450192 | Msa0660560:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | - | chr4_3:71450588-71450607 | None:intergenic | 20.0% |
| !!! | TGTTACTTTGAAAACTAATA+AGG | + | chr4_3:71450670-71450689 | Msa0660560:intron | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | + | chr4_3:71451196-71451215 | Msa0660560:CDS | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | + | chr4_3:71451197-71451216 | Msa0660560:CDS | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | - | chr4_3:71451295-71451314 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | - | chr4_3:71451504-71451523 | None:intergenic | 20.0% |
| !! | TAATCATGAAATTCAATGTT+AGG | + | chr4_3:71451733-71451752 | Msa0660560:intron | 20.0% |
| !! | AAATACAAAAGCAATTGAAA+AGG | - | chr4_3:71451838-71451857 | None:intergenic | 20.0% |
| ! | TTGCGCAAGTTTAAATTTAA+CGG | - | chr4_3:71447884-71447903 | None:intergenic | 25.0% |
| ! | ATATTACAAGAACTTTGCAA+TGG | + | chr4_3:71447934-71447953 | Msa0660560:intron | 25.0% |
| ! | AAGTTCTTGTAATATAAGCT+GGG | - | chr4_3:71448034-71448053 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGTAATATAAGC+TGG | - | chr4_3:71448035-71448054 | None:intergenic | 25.0% |
| ! | AGGAAAATTGATCAAAGTTA+CGG | - | chr4_3:71448112-71448131 | None:intergenic | 25.0% |
| !! | TGTAAAAAAGTATACGCAAA+TGG | + | chr4_3:71448317-71448336 | Msa0660560:intron | 25.0% |
| ! | CATGATTTAAGAATTCTACA+GGG | - | chr4_3:71448514-71448533 | None:intergenic | 25.0% |
| ! | ACATGATTTAAGAATTCTAC+AGG | - | chr4_3:71448515-71448534 | None:intergenic | 25.0% |
| !! | ATTGATTTATCTATGTAGCA+TGG | + | chr4_3:71448737-71448756 | Msa0660560:intron | 25.0% |
| ! | TTGATTTATCTATGTAGCAT+GGG | + | chr4_3:71448738-71448757 | Msa0660560:intron | 25.0% |
| ! | AGTCAAAATTAACCAAACAA+AGG | - | chr4_3:71448931-71448950 | None:intergenic | 25.0% |
| ! | AACATTACAAAAAAATCACG+TGG | - | chr4_3:71449027-71449046 | None:intergenic | 25.0% |
| ! | ATAAATATGGATTCCAACAA+GGG | + | chr4_3:71449127-71449146 | Msa0660560:CDS | 25.0% |
| !! | AAATATTTCTTTTCCCTTGT+TGG | - | chr4_3:71449143-71449162 | None:intergenic | 25.0% |
| ! | TTACTTACACTAGGAATAAA+AGG | - | chr4_3:71449567-71449586 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTACTTACACT+AGG | - | chr4_3:71449576-71449595 | None:intergenic | 25.0% |
| ! | ATAGCAAATGAGTAACATAA+AGG | - | chr4_3:71449594-71449613 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTTGCAGCAAAC+AGG | + | chr4_3:71449845-71449864 | Msa0660560:intron | 25.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | - | chr4_3:71449950-71449969 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | + | chr4_3:71450023-71450042 | Msa0660560:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | - | chr4_3:71450745-71450764 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | - | chr4_3:71450803-71450822 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | + | chr4_3:71450800-71450819 | Msa0660560:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | + | chr4_3:71450818-71450837 | Msa0660560:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | + | chr4_3:71451198-71451217 | Msa0660560:CDS | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | - | chr4_3:71451225-71451244 | None:intergenic | 25.0% |
| ! | ATATCACTAACAAACATTGT+TGG | + | chr4_3:71451530-71451549 | Msa0660560:intron | 25.0% |
| !!! | TCCTTTTTTTTGTCTGAAGA+GGG | - | chr4_3:71447679-71447698 | None:intergenic | 30.0% |
| !!! | AAAAAAGGAGCAGTTTTTTC+AGG | + | chr4_3:71447690-71447709 | Msa0660560:CDS | 30.0% |
| !!! | AAAAAGGAGCAGTTTTTTCA+GGG | + | chr4_3:71447691-71447710 | Msa0660560:CDS | 30.0% |
| AAAGTGCATTATCATATTGC+TGG | + | chr4_3:71447832-71447851 | Msa0660560:intron | 30.0% | |
| !!! | ATAGCTTTTTCGCAAGATTT+CGG | + | chr4_3:71447984-71448003 | Msa0660560:intron | 30.0% |
| TGGGAAATTGATCAAAGTAT+CGG | - | chr4_3:71448015-71448034 | None:intergenic | 30.0% | |
| TACAAGAACTTTGTAATGGT+TGG | + | chr4_3:71448043-71448062 | Msa0660560:intron | 30.0% | |
| AAAATTGATCAAAGTTACGG+TGG | - | chr4_3:71448109-71448128 | None:intergenic | 30.0% | |
| ! | TCACACACGTATAAAGTTTT+AGG | - | chr4_3:71448132-71448151 | None:intergenic | 30.0% |
| AAAACATTAGGATCATTCTG+TGG | + | chr4_3:71448270-71448289 | Msa0660560:intron | 30.0% | |
| !! | TATCAGCATTTTGATGTTTG+CGG | + | chr4_3:71448421-71448440 | Msa0660560:intron | 30.0% |
| AATGTATCAGACAAGAATGA+TGG | + | chr4_3:71448549-71448568 | Msa0660560:intron | 30.0% | |
| TTCATCAAAATAACACGAAC+AGG | + | chr4_3:71448626-71448645 | Msa0660560:intron | 30.0% | |
| !!! | ATGTGGCTATTTTTTTGGAA+AGG | - | chr4_3:71448905-71448924 | None:intergenic | 30.0% |
| CAGTGAAGAAGACATAAATA+TGG | + | chr4_3:71449114-71449133 | Msa0660560:intron | 30.0% | |
| CATAAATATGGATTCCAACA+AGG | + | chr4_3:71449126-71449145 | Msa0660560:CDS | 30.0% | |
| !! | TAATTTGCTAACATGTGAAC+AGG | + | chr4_3:71449260-71449279 | Msa0660560:intron | 30.0% |
| CCATCAGGTAAAAACAAAAA+CGG | + | chr4_3:71449453-71449472 | Msa0660560:intron | 30.0% | |
| ATAATTTACTGTGAGTGTCT+TGG | - | chr4_3:71449539-71449558 | None:intergenic | 30.0% | |
| ! | TTTAAAGTCATTGCTTTCAC+TGG | - | chr4_3:71449693-71449712 | None:intergenic | 30.0% |
| ! | GATATGGCATCTTATTTGTT+TGG | + | chr4_3:71449726-71449745 | Msa0660560:intron | 30.0% |
| ACTGTCATCATGATTTAGTT+AGG | + | chr4_3:71450470-71450489 | Msa0660560:intron | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | - | chr4_3:71450891-71450910 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | + | chr4_3:71450889-71450908 | Msa0660560:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | + | chr4_3:71450996-71451015 | Msa0660560:CDS | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | + | chr4_3:71451003-71451022 | Msa0660560:CDS | 30.0% | |
| TCTATCATAGCAATATGTTC+TGG | + | chr4_3:71451142-71451161 | Msa0660560:intron | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | + | chr4_3:71451220-71451239 | Msa0660560:CDS | 30.0% | |
| AATATCATTACACGACACAT+AGG | + | chr4_3:71451256-71451275 | Msa0660560:intron | 30.0% | |
| !! | TAACAAACATTGTTGGCTTT+AGG | + | chr4_3:71451537-71451556 | Msa0660560:intron | 30.0% |
| ! | ACTCCTCTTTTTATATGACT+TGG | + | chr4_3:71451587-71451606 | Msa0660560:CDS | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | - | chr4_3:71451593-71451612 | None:intergenic | 30.0% | |
| TTCAATGTTAGGAATGATTG+TGG | + | chr4_3:71451744-71451763 | Msa0660560:intron | 30.0% | |
| TTAGGAATGATTGTGGAATA+TGG | + | chr4_3:71451751-71451770 | Msa0660560:intron | 30.0% | |
| TAGGAATGATTGTGGAATAT+GGG | + | chr4_3:71451752-71451771 | Msa0660560:intron | 30.0% | |
| !! | TGTATGTTATAGGTTGATGA+AGG | + | chr4_3:71451893-71451912 | Msa0660560:intron | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | + | chr4_3:71451928-71451947 | Msa0660560:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | - | chr4_3:71451956-71451975 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | + | chr4_3:71451961-71451980 | Msa0660560:CDS | 30.0% | |
| TGAAATAAAACGCCGACAAA+CGG | + | chr4_3:71447627-71447646 | Msa0660560:CDS | 35.0% | |
| ACCCTCTTCAGACAAAAAAA+AGG | + | chr4_3:71447675-71447694 | Msa0660560:CDS | 35.0% | |
| !!! | CTCCTTTTTTTTGTCTGAAG+AGG | - | chr4_3:71447680-71447699 | None:intergenic | 35.0% |
| GAAAAAGATGAGTACCTATC+TGG | - | chr4_3:71447739-71447758 | None:intergenic | 35.0% | |
| CTTGCGAAAAAGCTATCTAA+TGG | - | chr4_3:71447980-71447999 | None:intergenic | 35.0% | |
| ACATATCTGTCTGTTAGACA+TGG | + | chr4_3:71448151-71448170 | Msa0660560:intron | 35.0% | |
| !! | TGTTAGACATGGTTTTACGA+TGG | + | chr4_3:71448162-71448181 | Msa0660560:intron | 35.0% |
| !! | GTTAGACATGGTTTTACGAT+GGG | + | chr4_3:71448163-71448182 | Msa0660560:intron | 35.0% |
| !! | TTTACGATGGGTTATCATAG+AGG | + | chr4_3:71448175-71448194 | Msa0660560:intron | 35.0% |
| !! | TTACGATGGGTTATCATAGA+GGG | + | chr4_3:71448176-71448195 | Msa0660560:intron | 35.0% |
| ! | ATGTTTTCGATTGATCAGCA+CGG | - | chr4_3:71448257-71448276 | None:intergenic | 35.0% |
| GCTGATCAATCGAAAACATT+AGG | + | chr4_3:71448258-71448277 | Msa0660560:intron | 35.0% | |
| ATCATACAATGCGTCTGAAA+AGG | + | chr4_3:71448380-71448399 | Msa0660560:intron | 35.0% | |
| TTGGAAAGGAATGTACATGT+GGG | - | chr4_3:71448891-71448910 | None:intergenic | 35.0% | |
| TTTGGAAAGGAATGTACATG+TGG | - | chr4_3:71448892-71448911 | None:intergenic | 35.0% | |
| !!! | GGTACATGTGGCTATTTTTT+TGG | - | chr4_3:71448910-71448929 | None:intergenic | 35.0% |
| ! | TAACCAAACAAAGGTACATG+TGG | - | chr4_3:71448922-71448941 | None:intergenic | 35.0% |
| TCACGTGGTCAACAATTAAA+TGG | - | chr4_3:71449012-71449031 | None:intergenic | 35.0% | |
| ATTACCTCATGTTCACATGT+TGG | - | chr4_3:71449178-71449197 | None:intergenic | 35.0% | |
| AAAACAAAGGATGGCTAAGA+TGG | + | chr4_3:71449287-71449306 | Msa0660560:CDS | 35.0% | |
| TATCCTTGGAAGAGATCAAA+GGG | + | chr4_3:71449313-71449332 | Msa0660560:CDS | 35.0% | |
| TGATAAGGAAGATGGCAATA+AGG | + | chr4_3:71449386-71449405 | Msa0660560:intron | 35.0% | |
| !!! | CCGTTTTTGTTTTTACCTGA+TGG | - | chr4_3:71449456-71449475 | None:intergenic | 35.0% |
| GACACTCACAGTAAATTATG+TGG | + | chr4_3:71449540-71449559 | Msa0660560:CDS | 35.0% | |
| AAACTCTGACGAATGTGATA+TGG | + | chr4_3:71449710-71449729 | Msa0660560:intron | 35.0% | |
| TGACTAACTCATCAGTTGAA+TGG | - | chr4_3:71449752-71449771 | None:intergenic | 35.0% | |
| TAGAAACTGAGACCATATAC+AGG | - | chr4_3:71450038-71450057 | None:intergenic | 35.0% | |
| TGACAATGACAGATGAAACA+AGG | + | chr4_3:71450158-71450177 | Msa0660560:intron | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | + | chr4_3:71450240-71450259 | Msa0660560:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | + | chr4_3:71450776-71450795 | Msa0660560:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | + | chr4_3:71451336-71451355 | Msa0660560:CDS | 35.0% | |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | + | chr4_3:71451549-71451568 | Msa0660560:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | - | chr4_3:71451582-71451601 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | - | chr4_3:71451625-71451644 | None:intergenic | 35.0% | |
| !! | ATAAAGTGGATGATGGAAAG+AGG | + | chr4_3:71451777-71451796 | Msa0660560:CDS | 35.0% |
| !!! | TCGGCGTTTTATTTCAACCA+TGG | - | chr4_3:71447623-71447642 | None:intergenic | 40.0% |
| !! | TTTTCAGGGAAGACCTTTTG+TGG | + | chr4_3:71447705-71447724 | Msa0660560:CDS | 40.0% |
| TCTGGTACCAAATCCACAAA+AGG | - | chr4_3:71447721-71447740 | None:intergenic | 40.0% | |
| ! | TTGTGGATTTGGTACCAGAT+AGG | + | chr4_3:71447722-71447741 | Msa0660560:CDS | 40.0% |
| ATGATCAAGCTCAACGACAT+AGG | - | chr4_3:71448365-71448384 | None:intergenic | 40.0% | |
| TAGCCACATGTACCTTTGTT+TGG | + | chr4_3:71448916-71448935 | Msa0660560:intron | 40.0% | |
| GAATCCAACATGTGAACATG+AGG | + | chr4_3:71449171-71449190 | Msa0660560:CDS | 40.0% | |
| GTGAACAGGAGCTAAAACAA+AGG | + | chr4_3:71449274-71449293 | Msa0660560:intron | 40.0% | |
| ACAGGAGCTAAAACAAAGGA+TGG | + | chr4_3:71449278-71449297 | Msa0660560:intron | 40.0% | |
| CTATCCTTGGAAGAGATCAA+AGG | + | chr4_3:71449312-71449331 | Msa0660560:CDS | 40.0% | |
| TATCCCTTTGATCTCTTCCA+AGG | - | chr4_3:71449319-71449338 | None:intergenic | 40.0% | |
| !! | TCAGCATTGACACTAGACAT+CGG | - | chr4_3:71449369-71449388 | None:intergenic | 40.0% |
| GTCTAGTGTCAATGCTGATA+AGG | + | chr4_3:71449371-71449390 | Msa0660560:intron | 40.0% | |
| GTCAATGCTGATAAGGAAGA+TGG | + | chr4_3:71449378-71449397 | Msa0660560:intron | 40.0% | |
| CGAAACATTTCCTTGTCAAC+GGG | - | chr4_3:71449420-71449439 | None:intergenic | 40.0% | |
| CCGAAACATTTCCTTGTCAA+CGG | - | chr4_3:71449421-71449440 | None:intergenic | 40.0% | |
| CCGTTGACAAGGAAATGTTT+CGG | + | chr4_3:71449418-71449437 | Msa0660560:intron | 40.0% | |
| !!! | CGGAAAGTGTTTTTACCATC+AGG | + | chr4_3:71449438-71449457 | Msa0660560:intron | 40.0% |
| GATCTAATGTAGAACCCAGT+TGG | - | chr4_3:71449507-71449526 | None:intergenic | 40.0% | |
| !!! | GTGAGTGTCTTGGCTTTTTT+GGG | - | chr4_3:71449529-71449548 | None:intergenic | 40.0% |
| !!! | TGTGAGTGTCTTGGCTTTTT+TGG | - | chr4_3:71449530-71449549 | None:intergenic | 40.0% |
| TATGCCATATGTTCATGCAG+TGG | + | chr4_3:71449649-71449668 | Msa0660560:intron | 40.0% | |
| TCAGACATACCATACTGTGA+AGG | + | chr4_3:71449879-71449898 | Msa0660560:CDS | 40.0% | |
| TCTCTTGTTCCTTCACAGTA+TGG | - | chr4_3:71449891-71449910 | None:intergenic | 40.0% | |
| ATACTGTGAAGGAACAAGAG+AGG | + | chr4_3:71449890-71449909 | Msa0660560:CDS | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | - | chr4_3:71449933-71449952 | None:intergenic | 40.0% | |
| GTCTGAATCATGAAACTCGT+TGG | + | chr4_3:71450229-71450248 | Msa0660560:intron | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | + | chr4_3:71451025-71451044 | Msa0660560:CDS | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | - | chr4_3:71451035-71451054 | None:intergenic | 40.0% | |
| GTGAGTTTGTACCGAGAAAA+TGG | - | chr4_3:71451039-71451058 | None:intergenic | 40.0% | |
| CATAGCAATATGTTCTGGCA+TGG | + | chr4_3:71451147-71451166 | Msa0660560:intron | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | - | chr4_3:71451205-71451224 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | + | chr4_3:71451439-71451458 | Msa0660560:CDS | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | + | chr4_3:71451564-71451583 | Msa0660560:CDS | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | + | chr4_3:71451643-71451662 | Msa0660560:CDS | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | + | chr4_3:71451763-71451782 | Msa0660560:CDS | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | + | chr4_3:71451770-71451789 | Msa0660560:CDS | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | + | chr4_3:71451906-71451925 | Msa0660560:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | + | chr4_3:71451916-71451935 | Msa0660560:CDS | 40.0% | |
| AGTTGCAAAACAGTCAAGGA+GGG | + | chr4_3:71451985-71452004 | Msa0660560:CDS | 40.0% | |
| AATAAAACGCCGACAAACGG+AGG | + | chr4_3:71447630-71447649 | Msa0660560:CDS | 45.0% | |
| CATTGCAAACCTCCGTTTGT+CGG | - | chr4_3:71447642-71447661 | None:intergenic | 45.0% | |
| ! | GGGAAGACCTTTTGTGGATT+TGG | + | chr4_3:71447711-71447730 | Msa0660560:CDS | 45.0% |
| AGACGACATGCACATGCAAA+AGG | - | chr4_3:71448222-71448241 | None:intergenic | 45.0% | |
| TTGCATGTGCATGTCGTCTT+TGG | + | chr4_3:71448223-71448242 | Msa0660560:intron | 45.0% | |
| TTGACACTAGACATCGGAAC+TGG | - | chr4_3:71449363-71449382 | None:intergenic | 45.0% | |
| ACAGCCACTGCATGAACATA+TGG | - | chr4_3:71449656-71449675 | None:intergenic | 45.0% | |
| GCAATATGTTCTGGCATGGA+AGG | + | chr4_3:71451151-71451170 | Msa0660560:intron | 45.0% | |
| GAGCATTCAGAATCATGCAC+TGG | - | chr4_3:71451332-71451351 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | - | chr4_3:71451364-71451383 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | - | chr4_3:71451635-71451654 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | - | chr4_3:71451645-71451664 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | + | chr4_3:71451642-71451661 | Msa0660560:CDS | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | + | chr4_3:71451651-71451670 | Msa0660560:CDS | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | - | chr4_3:71451655-71451674 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAAACAGTCA+AGG | + | chr4_3:71451981-71452000 | Msa0660560:CDS | 45.0% | |
| CAGTTGCAAAACAGTCAAGG+AGG | + | chr4_3:71451984-71452003 | Msa0660560:CDS | 45.0% | |
| CGACAAACGGAGGTTTGCAA+TGG | + | chr4_3:71447640-71447659 | Msa0660560:CDS | 50.0% | |
| GACATGCACATGCAAAAGGC+TGG | - | chr4_3:71448218-71448237 | None:intergenic | 50.0% | |
| GGCTAAGATGGAGCTATCCT+TGG | + | chr4_3:71449299-71449318 | Msa0660560:CDS | 50.0% | |
| CACTAGACATCGGAACTGGT+TGG | - | chr4_3:71449359-71449378 | None:intergenic | 50.0% | |
| GTTCATGCAGTGGCTGTCTT+CGG | + | chr4_3:71449659-71449678 | Msa0660560:intron | 50.0% | |
| ! | TCGGAACTGGTTGGTGTGTG+AGG | - | chr4_3:71449350-71449369 | None:intergenic | 55.0% |
| GGACTGTGAACCCGTTGACA+AGG | + | chr4_3:71449407-71449426 | Msa0660560:intron | 55.0% | |
| TCGTAGCCAGCACTCCAACT+GGG | + | chr4_3:71449490-71449509 | Msa0660560:CDS | 55.0% | |
| GTAGAACCCAGTTGGAGTGC+TGG | - | chr4_3:71449499-71449518 | None:intergenic | 55.0% | |
| ! | GGCATGGAAGGCACAAACAC+AGG | + | chr4_3:71451163-71451182 | Msa0660560:CDS | 55.0% |
| ! | TCAGCACGGGCTGAATGACT+TGG | - | chr4_3:71451416-71451435 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | - | chr4_3:71451430-71451449 | None:intergenic | 55.0% | |
| !! | GGAGTGCTGGCTACGACAAG+AGG | - | chr4_3:71449486-71449505 | None:intergenic | 60.0% |
| GTCGTAGCCAGCACTCCAAC+TGG | + | chr4_3:71449489-71449508 | Msa0660560:CDS | 60.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | + | chr4_3:71451417-71451436 | Msa0660560:CDS | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | - | chr4_3:71451429-71451448 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71447620 | 71452021 | 71447620 | ID=Msa0660560;Name=Msa0660560 |
| chr4_3 | mRNA | 71447620 | 71452021 | 71447620 | ID=Msa0660560-mRNA-1;Parent=Msa0660560;Name=Msa0660560-mRNA-1;_AED=0.15;_eAED=0.16;_QI=2|0|0|1|0.8|0.72|11|0|377 |
| chr4_3 | exon | 71447620 | 71447743 | 71447620 | ID=Msa0660560-mRNA-1:exon:21354;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71449117 | 71449192 | 71449117 | ID=Msa0660560-mRNA-1:exon:21355;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71449282 | 71449375 | 71449282 | ID=Msa0660560-mRNA-1:exon:21356;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71449460 | 71449578 | 71449460 | ID=Msa0660560-mRNA-1:exon:21357;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71449867 | 71449956 | 71449867 | ID=Msa0660560-mRNA-1:exon:21358;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71450957 | 71451046 | 71450957 | ID=Msa0660560-mRNA-1:exon:21359;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71451152 | 71451241 | 71451152 | ID=Msa0660560-mRNA-1:exon:21360;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71451320 | 71451460 | 71451320 | ID=Msa0660560-mRNA-1:exon:21361;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71451559 | 71451683 | 71451559 | ID=Msa0660560-mRNA-1:exon:21362;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71451755 | 71451821 | 71451755 | ID=Msa0660560-mRNA-1:exon:21363;Parent=Msa0660560-mRNA-1 |
| chr4_3 | exon | 71451905 | 71452021 | 71451905 | ID=Msa0660560-mRNA-1:exon:21364;Parent=Msa0660560-mRNA-1 |
| chr4_3 | five_prime_UTR | 71447620 | 71447621 | 71447620 | ID=Msa0660560-mRNA-1:five_prime_utr;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71447622 | 71447743 | 71447622 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71449117 | 71449192 | 71449117 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71449282 | 71449375 | 71449282 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71449460 | 71449578 | 71449460 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71449867 | 71449956 | 71449867 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71450957 | 71451046 | 71450957 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71451152 | 71451241 | 71451152 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71451320 | 71451460 | 71451320 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71451559 | 71451683 | 71451559 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71451755 | 71451821 | 71451755 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| chr4_3 | CDS | 71451905 | 71452021 | 71451905 | ID=Msa0660560-mRNA-1:cds;Parent=Msa0660560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
