Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392380 | KEH28584.1 | 86.082 | 388 | 26 | 1 | 17 | 404 | 1 | 360 | 0.0 | 684 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392380 | A0A072UFQ5 | 86.082 | 388 | 26 | 1 | 17 | 404 | 1 | 360 | 0.0 | 684 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063140 | Msa1392380 | 0.821899 | 3.159180e-53 | -8.615850e-47 |
| Msa0660560 | Msa1392380 | 0.936902 | 8.246632e-98 | -8.615850e-47 |
| Msa0461160 | Msa1392380 | 0.801939 | 7.105569e-49 | -8.615850e-47 |
| Msa0249720 | Msa1392380 | 0.954136 | 5.821372e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1392380 | MtrunA17_Chr4g0002051 | 77.126 | 341 | 17 | 2 | 97 | 404 | 9 | 321 | 0.0 | 520 |
| Msa1392380 | MtrunA17_Chr8g0381471 | 95.480 | 177 | 8 | 0 | 228 | 404 | 1 | 177 | 1.52e-124 | 357 |
| Msa1392380 | MtrunA17_Chr4g0002061 | 87.000 | 100 | 13 | 0 | 1 | 100 | 14 | 113 | 1.73e-57 | 184 |
| Msa1392380 | MtrunA17_Chr2g0287671 | 32.090 | 268 | 155 | 12 | 149 | 404 | 183 | 435 | 3.35e-26 | 109 |
| Msa1392380 | MtrunA17_Chr8g0361701 | 37.762 | 143 | 81 | 3 | 214 | 356 | 108 | 242 | 1.16e-23 | 99.0 |
| Msa1392380 | MtrunA17_Chr8g0349211 | 32.990 | 97 | 60 | 2 | 223 | 315 | 9 | 104 | 2.77e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATACCATAACAAGTTTA+TGG | 0.178722 | tig0021499:-49353 | Msa1392380:CDS |
| CCTAGTCACTCCGAATGATT+TGG | 0.276768 | tig0021499:-48907 | Msa1392380:CDS |
| GATAGCATTGGATTTGATAT+TGG | 0.305750 | tig0021499:-48621 | Msa1392380:CDS |
| TTAGGAATGATTGTGGAATA+TGG | 0.306351 | tig0021499:-48798 | Msa1392380:intron |
| TTACTTACACTAGGAATAAA+AGG | 0.320416 | tig0021499:+50984 | None:intergenic |
| TCTCTTGTTCCTTCACAGTA+TGG | 0.328040 | tig0021499:+50660 | None:intergenic |
| CAGTGAAGAAGACATAAATA+TGG | 0.342237 | tig0021499:-51434 | Msa1392380:CDS |
| GTGAGTTTGTACCGAGAAAA+TGG | 0.351582 | tig0021499:+49513 | None:intergenic |
| TTGGCTTTAGGCTTTGTATA+TGG | 0.351595 | tig0021499:-49000 | Msa1392380:intron |
| GTCGTAGCCAGCACTCCAAC+TGG | 0.353438 | tig0021499:-51059 | Msa1392380:CDS |
| GAAAAGAAATATTTGAAGAT+TGG | 0.359106 | tig0021499:-51399 | Msa1392380:CDS |
| AAATACCATAACAAGTTTAT+GGG | 0.365331 | tig0021499:-49352 | Msa1392380:CDS |
| AGGTCCCCATAAACTTGTTA+TGG | 0.415010 | tig0021499:+49347 | None:intergenic |
| CGGAGTGACTAGGCTAAATT+CGG | 0.418219 | tig0021499:+48917 | None:intergenic |
| GTCTCATTCAATAAGTTTGA+AGG | 0.422134 | tig0021499:+48596 | None:intergenic |
| CTAGTCACTCCGAATGATTT+GGG | 0.432092 | tig0021499:-48906 | Msa1392380:CDS |
| GATGCGAAGCATTAAGAAAC+TGG | 0.441723 | tig0021499:-49110 | Msa1392380:intron |
| TTGTGGATTTGGTACCAGAT+AGG | 0.443107 | tig0021499:-52830 | Msa1392380:intron |
| AGGCTAAATTCGGATATGTT+CGG | 0.457136 | tig0021499:+48927 | None:intergenic |
| GTCATTCAGCCCGTGCTGAC+AGG | 0.457526 | tig0021499:-49132 | Msa1392380:CDS |
| GGCTAAGATGGAGCTATCCT+TGG | 0.458948 | tig0021499:-51249 | Msa1392380:CDS |
| AAAACAAAGGATGGCTAAGA+TGG | 0.462193 | tig0021499:-51261 | Msa1392380:CDS |
| GCCTGCATTCCCAAATCATT+CGG | 0.464260 | tig0021499:+48897 | None:intergenic |
| TCTATCATAGCAATATGTTC+TGG | 0.467480 | tig0021499:-49407 | Msa1392380:intron |
| CTTATTGAATGAGACAACTT+TGG | 0.469819 | tig0021499:-48588 | Msa1392380:CDS |
| TCCGAATGATTTGGGAATGC+AGG | 0.472595 | tig0021499:-48898 | Msa1392380:CDS |
| TACCTTTGAAATCTTATCAA+AGG | 0.474112 | tig0021499:+49327 | None:intergenic |
| GTAGAACCCAGTTGGAGTGC+TGG | 0.478262 | tig0021499:+51052 | None:intergenic |
| ATAATTTACTGTGAGTGTCT+TGG | 0.481255 | tig0021499:+51012 | None:intergenic |
| TTCAATGTTAGGAATGATTG+TGG | 0.482902 | tig0021499:-48805 | Msa1392380:intron |
| TCTGGTACCAAATCCACAAA+AGG | 0.506332 | tig0021499:+52834 | None:intergenic |
| TGAAATAAAACGCCGACGAA+CGG | 0.507912 | tig0021499:-52925 | Msa1392380:CDS |
| ATGGGTCATAAAGTGGATGA+TGG | 0.508546 | tig0021499:-48779 | Msa1392380:CDS |
| TCAGCACGGGCTGAATGACT+TGG | 0.509750 | tig0021499:+49136 | None:intergenic |
| TCTTGGTCAAGCATTTCTCT+AGG | 0.517758 | tig0021499:+50618 | None:intergenic |
| AAAATAAGATTACTACGTCT+TGG | 0.519892 | tig0021499:+50601 | None:intergenic |
| TTGACACTAGACATCGGAAC+TGG | 0.520973 | tig0021499:+51188 | None:intergenic |
| TATCCCTTTGATCTCTTCCA+AGG | 0.525111 | tig0021499:+51232 | None:intergenic |
| CATAAATATGGATTCCAACA+AGG | 0.526400 | tig0021499:-51422 | Msa1392380:CDS |
| TATCCTTGGAAGAGATCAAA+GGG | 0.526992 | tig0021499:-51235 | Msa1392380:CDS |
| ATTACCTCATGTTCACATGT+TGG | 0.530470 | tig0021499:+51373 | None:intergenic |
| GACACTCACAGTAAATTATG+TGG | 0.534907 | tig0021499:-51008 | Msa1392380:CDS |
| GACCTTTGATAAGATTTCAA+AGG | 0.535769 | tig0021499:-49329 | Msa1392380:intron |
| CCAAATCATTCGGAGTGACT+AGG | 0.536951 | tig0021499:+48907 | None:intergenic |
| TACAAGACTCAGGATAGCAT+TGG | 0.545324 | tig0021499:-48633 | Msa1392380:CDS |
| GCAATATGTTCTGGCATGGA+AGG | 0.545775 | tig0021499:-49398 | Msa1392380:CDS |
| TAGGAATGATTGTGGAATAT+GGG | 0.546242 | tig0021499:-48797 | Msa1392380:CDS |
| TGTCAAAGTCGATCACAAGC+AGG | 0.547083 | tig0021499:+49188 | None:intergenic |
| TGCTTCGCATCCTGTCAGCA+CGG | 0.548361 | tig0021499:+49122 | None:intergenic |
| GTGGAATATGGGTCATAAAG+TGG | 0.551770 | tig0021499:-48786 | Msa1392380:CDS |
| GCTTCGCATCCTGTCAGCAC+GGG | 0.553266 | tig0021499:+49123 | None:intergenic |
| CATAGCAATATGTTCTGGCA+TGG | 0.557578 | tig0021499:-49402 | Msa1392380:intron |
| CATTGCAAACCTCCGTTCGT+CGG | 0.559198 | tig0021499:+52913 | None:intergenic |
| TGTATGTTATAGGTTGATGA+AGG | 0.572157 | tig0021499:-48656 | Msa1392380:intron |
| GATCTAATGTAGAACCCAGT+TGG | 0.573469 | tig0021499:+51044 | None:intergenic |
| TTGATGAAGGTACAAGACTC+AGG | 0.574689 | tig0021499:-48643 | Msa1392380:CDS |
| CTATCCTTGGAAGAGATCAA+AGG | 0.582658 | tig0021499:-51236 | Msa1392380:CDS |
| ATAAATATGGATTCCAACAA+GGG | 0.583084 | tig0021499:-51421 | Msa1392380:CDS |
| TGGCAGTTGCAAAACAGTCA+AGG | 0.585684 | tig0021499:-48568 | Msa1392380:CDS |
| ATAAAGTGGATGATGGAAAG+AGG | 0.602413 | tig0021499:-48772 | Msa1392380:CDS |
| TCGTAGCCAGCACTCCAACT+GGG | 0.605063 | tig0021499:-51058 | Msa1392380:CDS |
| ACAGGAGCTAAAACAAAGGA+TGG | 0.609797 | tig0021499:-51270 | Msa1392380:intron |
| TCGGAACTGGTTGGTGTGTG+AGG | 0.609902 | tig0021499:+51201 | None:intergenic |
| GGCATGGAAGGCACAAACAC+AGG | 0.610947 | tig0021499:-49386 | Msa1392380:CDS |
| AATACCATAACAAGTTTATG+GGG | 0.611042 | tig0021499:-49351 | Msa1392380:CDS |
| CACTAGACATCGGAACTGGT+TGG | 0.615732 | tig0021499:+51192 | None:intergenic |
| GGAGTGCTGGCTACGACAAG+AGG | 0.618013 | tig0021499:+51065 | None:intergenic |
| GAATCCAACATGTGAACATG+AGG | 0.618024 | tig0021499:-51377 | Msa1392380:intron |
| GTATATGGAAGAGTTCCTCA+TGG | 0.622722 | tig0021499:-48985 | Msa1392380:CDS |
| GAGCATTCAGAATCATGCAC+TGG | 0.624661 | tig0021499:+49220 | None:intergenic |
| GTGAACAGGAGCTAAAACAA+AGG | 0.629847 | tig0021499:-51274 | Msa1392380:intron |
| AATAAAACGCCGACGAACGG+AGG | 0.630467 | tig0021499:-52922 | Msa1392380:CDS |
| ATGATTCTGAATGCTCACAT+TGG | 0.634837 | tig0021499:-49213 | Msa1392380:CDS |
| CGACGAACGGAGGTTTGCAA+TGG | 0.641886 | tig0021499:-52912 | Msa1392380:CDS |
| TCAGACATACCATACTGTGA+AGG | 0.650977 | tig0021499:-50669 | Msa1392380:CDS |
| AGTTGCAAAACAGTCAAGGA+GGG | 0.665111 | tig0021499:-48564 | Msa1392380:CDS |
| GTTTGTACCGAGAAAATGGT+CGG | 0.671456 | tig0021499:+49517 | None:intergenic |
| CAGTTGCAAAACAGTCAAGG+AGG | 0.684092 | tig0021499:-48565 | Msa1392380:CDS |
| ATACTGTGAAGGAACAAGAG+AGG | 0.703777 | tig0021499:-50658 | Msa1392380:CDS |
| TCAGCATTGACACTAGACAT+CGG | 0.708624 | tig0021499:+51182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTA+TGG | - | tig0021499:51058-51077 | Msa1392380:CDS | 0.0% |
| !!! | TCATTTTATATTTTAAATTG+CGG | - | tig0021499:49374-49393 | Msa1392380:CDS | 10.0% |
| !!! | ATTATTATTATTTCTTTCAT+TGG | - | tig0021499:49765-49784 | Msa1392380:intron | 10.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | + | tig0021499:52009-52028 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | + | tig0021499:52409-52428 | None:intergenic | 10.0% |
| !! | ATTATCAAATATATATGAAC+TGG | + | tig0021499:49625-49644 | None:intergenic | 15.0% |
| !!! | TATTTTGAATATGCATATTA+TGG | - | tig0021499:51481-51500 | Msa1392380:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | - | tig0021499:51618-51637 | Msa1392380:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | + | tig0021499:52444-52463 | None:intergenic | 15.0% |
| !! | AAATATGATATGTATGTTAT+AGG | - | tig0021499:52816-52835 | Msa1392380:intron | 15.0% |
| !! | ACAAACAAATCACAATTATA+AGG | + | tig0021499:48691-48710 | None:intergenic | 20.0% |
| !! | AGAAGATAAATCAGTATATT+TGG | + | tig0021499:48789-48808 | None:intergenic | 20.0% |
| !! | AAGTTCTTGTAATATAAGTT+GGG | + | tig0021499:48859-48878 | None:intergenic | 20.0% |
| !! | AAAGTTCTTGTAATATAAGT+TGG | + | tig0021499:48860-48879 | None:intergenic | 20.0% |
| !! | ATATTACAAGAACTTTGTAA+TGG | - | tig0021499:48969-48988 | Msa1392380:CDS | 20.0% |
| !! | TGCTTATATATTATAAACTG+CGG | - | tig0021499:49012-49031 | Msa1392380:intron | 20.0% |
| !!! | ATAAACAGTAATTTAAGTTG+CGG | + | tig0021499:49405-49424 | None:intergenic | 20.0% |
| !!! | TCTTTCATTGGTTTTTATTT+TGG | - | tig0021499:49777-49796 | Msa1392380:intron | 20.0% |
| !! | AGAAAAAAGAGCTAAAAAAT+AGG | + | tig0021499:49917-49936 | None:intergenic | 20.0% |
| !! | GAAAAGAAATATTTGAAGAT+TGG | - | tig0021499:50083-50102 | Msa1392380:intron | 20.0% |
| !! | ATTTGTAGTATCAATTCATA+CGG | - | tig0021499:50134-50153 | Msa1392380:intron | 20.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | + | tig0021499:50922-50941 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | - | tig0021499:51106-51125 | Msa1392380:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | + | tig0021499:51521-51540 | None:intergenic | 20.0% |
| !!! | TGTTACTTTGAAAACTAATA+AGG | - | tig0021499:51603-51622 | Msa1392380:intron | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | - | tig0021499:52129-52148 | Msa1392380:intron | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | - | tig0021499:52130-52149 | Msa1392380:intron | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | + | tig0021499:52228-52247 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | + | tig0021499:52437-52456 | None:intergenic | 20.0% |
| !! | TAATCATGAAATTCAATGTT+AGG | - | tig0021499:52666-52685 | Msa1392380:intron | 20.0% |
| !! | AAATACAAAAGCAATTGAAA+AGG | + | tig0021499:52771-52790 | None:intergenic | 20.0% |
| ! | TTGCGCAAGTTTAAATTTAA+CGG | + | tig0021499:48814-48833 | None:intergenic | 25.0% |
| ! | ATATTACAAGAACTTTGCAA+TGG | - | tig0021499:48864-48883 | Msa1392380:intron | 25.0% |
| ! | AAGTTCTTGTAATATAAGCT+GGG | + | tig0021499:48964-48983 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGTAATATAAGC+TGG | + | tig0021499:48965-48984 | None:intergenic | 25.0% |
| ! | AGGAAAATTGATCAAAGTTA+CGG | + | tig0021499:49042-49061 | None:intergenic | 25.0% |
| !! | TGTAAAAAAGTATACGCAAA+TGG | - | tig0021499:49247-49266 | Msa1392380:intron | 25.0% |
| ! | CATGATTTAAGAATTCTACA+GGG | + | tig0021499:49444-49463 | None:intergenic | 25.0% |
| ! | ACATGATTTAAGAATTCTAC+AGG | + | tig0021499:49445-49464 | None:intergenic | 25.0% |
| !! | ATTGATTTATCTATGTAGCA+TGG | - | tig0021499:49667-49686 | Msa1392380:intron | 25.0% |
| ! | TTGATTTATCTATGTAGCAT+GGG | - | tig0021499:49668-49687 | Msa1392380:intron | 25.0% |
| ! | AGTCAAAATTAACCAAACAA+AGG | + | tig0021499:49865-49884 | None:intergenic | 25.0% |
| ! | AACATTACAAAAAAATCACG+TGG | + | tig0021499:49961-49980 | None:intergenic | 25.0% |
| ! | ATAAATATGGATTCCAACAA+GGG | - | tig0021499:50061-50080 | Msa1392380:intron | 25.0% |
| !! | AAATATTTCTTTTCCCTTGT+TGG | + | tig0021499:50077-50096 | None:intergenic | 25.0% |
| ! | TTACTTACACTAGGAATAAA+AGG | + | tig0021499:50501-50520 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTACTTACACT+AGG | + | tig0021499:50510-50529 | None:intergenic | 25.0% |
| ! | ATAGCAAATGAGTAACATAA+AGG | + | tig0021499:50528-50547 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTTGCAGCAAAC+AGG | - | tig0021499:50779-50798 | Msa1392380:intron | 25.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | + | tig0021499:50884-50903 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | - | tig0021499:50957-50976 | Msa1392380:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | + | tig0021499:51678-51697 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | + | tig0021499:51736-51755 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | - | tig0021499:51733-51752 | Msa1392380:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | - | tig0021499:51751-51770 | Msa1392380:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | - | tig0021499:52131-52150 | Msa1392380:intron | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | + | tig0021499:52158-52177 | None:intergenic | 25.0% |
| ! | ATATCACTAACAAACATTGT+TGG | - | tig0021499:52463-52482 | Msa1392380:intron | 25.0% |
| !!! | TCCTTTTTTTTGTCTGAAGA+GGG | + | tig0021499:48609-48628 | None:intergenic | 30.0% |
| !!! | AAAAAAGGAGCAGTTTTTTC+AGG | - | tig0021499:48620-48639 | Msa1392380:CDS | 30.0% |
| !!! | AAAAAGGAGCAGTTTTTTCA+GGG | - | tig0021499:48621-48640 | Msa1392380:CDS | 30.0% |
| AAAGTGCATTATCATATTGC+TGG | - | tig0021499:48762-48781 | Msa1392380:CDS | 30.0% | |
| !!! | ATAGCTTTTTCGCAAGATTT+CGG | - | tig0021499:48914-48933 | Msa1392380:CDS | 30.0% |
| TGGGAAATTGATCAAAGTAT+CGG | + | tig0021499:48945-48964 | None:intergenic | 30.0% | |
| TACAAGAACTTTGTAATGGT+TGG | - | tig0021499:48973-48992 | Msa1392380:CDS | 30.0% | |
| AAAATTGATCAAAGTTACGG+TGG | + | tig0021499:49039-49058 | None:intergenic | 30.0% | |
| ! | TCACACACGTATAAAGTTTT+AGG | + | tig0021499:49062-49081 | None:intergenic | 30.0% |
| AAAACATTAGGATCATTCTG+TGG | - | tig0021499:49200-49219 | Msa1392380:CDS | 30.0% | |
| !! | TATCAGCATTTTGATGTTTG+CGG | - | tig0021499:49351-49370 | Msa1392380:CDS | 30.0% |
| AATGTATCAGACAAGAATGA+TGG | - | tig0021499:49479-49498 | Msa1392380:intron | 30.0% | |
| TTCATCAAAATAACACGAAC+AGG | - | tig0021499:49556-49575 | Msa1392380:CDS | 30.0% | |
| !!! | ATGTGGCTATTTTTTTGGAA+AGG | + | tig0021499:49839-49858 | None:intergenic | 30.0% |
| CAGTGAAGAAGACATAAATA+TGG | - | tig0021499:50048-50067 | Msa1392380:intron | 30.0% | |
| CATAAATATGGATTCCAACA+AGG | - | tig0021499:50060-50079 | Msa1392380:intron | 30.0% | |
| !! | TAATTTGCTAACATGTGAAC+AGG | - | tig0021499:50194-50213 | Msa1392380:intron | 30.0% |
| CCATCAGGTAAAAACAAAAA+CGG | - | tig0021499:50387-50406 | Msa1392380:intron | 30.0% | |
| ATAATTTACTGTGAGTGTCT+TGG | + | tig0021499:50473-50492 | None:intergenic | 30.0% | |
| ! | GATATGGCATCTTATTTGTT+TGG | - | tig0021499:50660-50679 | Msa1392380:CDS | 30.0% |
| ACTGTCATCATGATTTAGTT+AGG | - | tig0021499:51403-51422 | Msa1392380:CDS | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | + | tig0021499:51824-51843 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | - | tig0021499:51822-51841 | Msa1392380:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | - | tig0021499:51929-51948 | Msa1392380:intron | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | - | tig0021499:51936-51955 | Msa1392380:intron | 30.0% | |
| TCTATCATAGCAATATGTTC+TGG | - | tig0021499:52075-52094 | Msa1392380:intron | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | - | tig0021499:52153-52172 | Msa1392380:intron | 30.0% | |
| AATATCATTACACGACACAT+AGG | - | tig0021499:52189-52208 | Msa1392380:intron | 30.0% | |
| !! | TAACAAACATTGTTGGCTTT+AGG | - | tig0021499:52470-52489 | Msa1392380:intron | 30.0% |
| ! | ACTCCTCTTTTTATATGACT+TGG | - | tig0021499:52520-52539 | Msa1392380:intron | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | + | tig0021499:52526-52545 | None:intergenic | 30.0% | |
| TTCAATGTTAGGAATGATTG+TGG | - | tig0021499:52677-52696 | Msa1392380:intron | 30.0% | |
| TTAGGAATGATTGTGGAATA+TGG | - | tig0021499:52684-52703 | Msa1392380:intron | 30.0% | |
| TAGGAATGATTGTGGAATAT+GGG | - | tig0021499:52685-52704 | Msa1392380:intron | 30.0% | |
| !! | TGTATGTTATAGGTTGATGA+AGG | - | tig0021499:52826-52845 | Msa1392380:intron | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | - | tig0021499:52861-52880 | Msa1392380:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | + | tig0021499:52889-52908 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | - | tig0021499:52894-52913 | Msa1392380:CDS | 30.0% | |
| ACCCTCTTCAGACAAAAAAA+AGG | - | tig0021499:48605-48624 | Msa1392380:CDS | 35.0% | |
| !!! | CTCCTTTTTTTTGTCTGAAG+AGG | + | tig0021499:48610-48629 | None:intergenic | 35.0% |
| GAAAAAGATGAGTACCTATC+TGG | + | tig0021499:48669-48688 | None:intergenic | 35.0% | |
| CTTGCGAAAAAGCTATCTAA+TGG | + | tig0021499:48910-48929 | None:intergenic | 35.0% | |
| ACATATCTGTCTGTTAGACA+TGG | - | tig0021499:49081-49100 | Msa1392380:intron | 35.0% | |
| !! | TGTTAGACATGGTTTTACGA+TGG | - | tig0021499:49092-49111 | Msa1392380:intron | 35.0% |
| !! | GTTAGACATGGTTTTACGAT+GGG | - | tig0021499:49093-49112 | Msa1392380:intron | 35.0% |
| !! | TTTACGATGGGTTATCATAG+AGG | - | tig0021499:49105-49124 | Msa1392380:intron | 35.0% |
| !! | TTACGATGGGTTATCATAGA+GGG | - | tig0021499:49106-49125 | Msa1392380:intron | 35.0% |
| ! | ATGTTTTCGATTGATCAGCA+CGG | + | tig0021499:49187-49206 | None:intergenic | 35.0% |
| GCTGATCAATCGAAAACATT+AGG | - | tig0021499:49188-49207 | Msa1392380:CDS | 35.0% | |
| ATCATACAATGCGTCTGAAA+AGG | - | tig0021499:49310-49329 | Msa1392380:intron | 35.0% | |
| TTGGAAAGGAATGTACATGT+GGG | + | tig0021499:49825-49844 | None:intergenic | 35.0% | |
| TTTGGAAAGGAATGTACATG+TGG | + | tig0021499:49826-49845 | None:intergenic | 35.0% | |
| !!! | GGTACATGTGGCTATTTTTT+TGG | + | tig0021499:49844-49863 | None:intergenic | 35.0% |
| ! | TAACCAAACAAAGGTACATG+TGG | + | tig0021499:49856-49875 | None:intergenic | 35.0% |
| TCACGTGGTCAACAATTAAA+TGG | + | tig0021499:49946-49965 | None:intergenic | 35.0% | |
| ATTACCTCATGTTCACATGT+TGG | + | tig0021499:50112-50131 | None:intergenic | 35.0% | |
| AAAACAAAGGATGGCTAAGA+TGG | - | tig0021499:50221-50240 | Msa1392380:intron | 35.0% | |
| TATCCTTGGAAGAGATCAAA+GGG | - | tig0021499:50247-50266 | Msa1392380:intron | 35.0% | |
| TGATAAGGAAGATGGCAATA+AGG | - | tig0021499:50320-50339 | Msa1392380:intron | 35.0% | |
| !!! | CCGTTTTTGTTTTTACCTGA+TGG | + | tig0021499:50390-50409 | None:intergenic | 35.0% |
| GACACTCACAGTAAATTATG+TGG | - | tig0021499:50474-50493 | Msa1392380:intron | 35.0% | |
| TTCAAAGTCATTGCTTTCAC+TGG | + | tig0021499:50627-50646 | None:intergenic | 35.0% | |
| TGACTAACTCATCAGTTGAA+TGG | + | tig0021499:50686-50705 | None:intergenic | 35.0% | |
| TAGAAACTGAGACCATATAC+AGG | + | tig0021499:50972-50991 | None:intergenic | 35.0% | |
| TGACAATGACAGATGAAACA+AGG | - | tig0021499:51091-51110 | Msa1392380:CDS | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | - | tig0021499:51173-51192 | Msa1392380:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | - | tig0021499:51709-51728 | Msa1392380:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | - | tig0021499:52269-52288 | Msa1392380:intron | 35.0% | |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | - | tig0021499:52482-52501 | Msa1392380:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | + | tig0021499:52515-52534 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | + | tig0021499:52558-52577 | None:intergenic | 35.0% | |
| !! | ATAAAGTGGATGATGGAAAG+AGG | - | tig0021499:52710-52729 | Msa1392380:intron | 35.0% |
| !!! | TCGGCGTTTTATTTCAACCA+TGG | + | tig0021499:48553-48572 | None:intergenic | 40.0% |
| TGAAATAAAACGCCGACGAA+CGG | - | tig0021499:48557-48576 | Msa1392380:CDS | 40.0% | |
| !! | TTTTCAGGGAAGACCTTTTG+TGG | - | tig0021499:48635-48654 | Msa1392380:CDS | 40.0% |
| TCTGGTACCAAATCCACAAA+AGG | + | tig0021499:48651-48670 | None:intergenic | 40.0% | |
| ! | TTGTGGATTTGGTACCAGAT+AGG | - | tig0021499:48652-48671 | Msa1392380:intron | 40.0% |
| ATGATCAAGCTCAACGACAT+AGG | + | tig0021499:49295-49314 | None:intergenic | 40.0% | |
| TAGCCACATGTACCTTTGTT+TGG | - | tig0021499:49850-49869 | Msa1392380:intron | 40.0% | |
| GAATCCAACATGTGAACATG+AGG | - | tig0021499:50105-50124 | Msa1392380:intron | 40.0% | |
| GTGAACAGGAGCTAAAACAA+AGG | - | tig0021499:50208-50227 | Msa1392380:intron | 40.0% | |
| ACAGGAGCTAAAACAAAGGA+TGG | - | tig0021499:50212-50231 | Msa1392380:intron | 40.0% | |
| CTATCCTTGGAAGAGATCAA+AGG | - | tig0021499:50246-50265 | Msa1392380:intron | 40.0% | |
| TATCCCTTTGATCTCTTCCA+AGG | + | tig0021499:50253-50272 | None:intergenic | 40.0% | |
| !! | TCAGCATTGACACTAGACAT+CGG | + | tig0021499:50303-50322 | None:intergenic | 40.0% |
| GTCTAGTGTCAATGCTGATA+AGG | - | tig0021499:50305-50324 | Msa1392380:intron | 40.0% | |
| GTCAATGCTGATAAGGAAGA+TGG | - | tig0021499:50312-50331 | Msa1392380:intron | 40.0% | |
| CGAAACATTTCCTTGTCAAC+GGG | + | tig0021499:50354-50373 | None:intergenic | 40.0% | |
| CCGAAACATTTCCTTGTCAA+CGG | + | tig0021499:50355-50374 | None:intergenic | 40.0% | |
| CCGTTGACAAGGAAATGTTT+CGG | - | tig0021499:50352-50371 | Msa1392380:intron | 40.0% | |
| !!! | CGGAAAGTGTTTTTACCATC+AGG | - | tig0021499:50372-50391 | Msa1392380:intron | 40.0% |
| GATCTAATGTAGAACCCAGT+TGG | + | tig0021499:50441-50460 | None:intergenic | 40.0% | |
| !!! | GTGAGTGTCTTGGCTTTTTT+GGG | + | tig0021499:50463-50482 | None:intergenic | 40.0% |
| !!! | TGTGAGTGTCTTGGCTTTTT+TGG | + | tig0021499:50464-50483 | None:intergenic | 40.0% |
| TATGCCATATGTTCATGCAG+TGG | - | tig0021499:50583-50602 | Msa1392380:CDS | 40.0% | |
| GAACTCTGACGAATGTGATA+TGG | - | tig0021499:50644-50663 | Msa1392380:CDS | 40.0% | |
| TCAGACATACCATACTGTGA+AGG | - | tig0021499:50813-50832 | Msa1392380:intron | 40.0% | |
| TCTCTTGTTCCTTCACAGTA+TGG | + | tig0021499:50825-50844 | None:intergenic | 40.0% | |
| ATACTGTGAAGGAACAAGAG+AGG | - | tig0021499:50824-50843 | Msa1392380:intron | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | + | tig0021499:50867-50886 | None:intergenic | 40.0% | |
| GTCTGAATCATGAAACTCGT+TGG | - | tig0021499:51162-51181 | Msa1392380:intron | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | - | tig0021499:51958-51977 | Msa1392380:intron | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | + | tig0021499:51968-51987 | None:intergenic | 40.0% | |
| GTGAGTTTGTACCGAGAAAA+TGG | + | tig0021499:51972-51991 | None:intergenic | 40.0% | |
| CATAGCAATATGTTCTGGCA+TGG | - | tig0021499:52080-52099 | Msa1392380:intron | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | + | tig0021499:52138-52157 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | - | tig0021499:52372-52391 | Msa1392380:intron | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | - | tig0021499:52497-52516 | Msa1392380:intron | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | - | tig0021499:52576-52595 | Msa1392380:intron | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | - | tig0021499:52696-52715 | Msa1392380:intron | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | - | tig0021499:52703-52722 | Msa1392380:intron | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | - | tig0021499:52839-52858 | Msa1392380:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | - | tig0021499:52849-52868 | Msa1392380:CDS | 40.0% | |
| AGTTGCAAAACAGTCAAGGA+GGG | - | tig0021499:52918-52937 | Msa1392380:CDS | 40.0% | |
| ! | GGGAAGACCTTTTGTGGATT+TGG | - | tig0021499:48641-48660 | Msa1392380:CDS | 45.0% |
| AGACGACATGCACATGCAAA+AGG | + | tig0021499:49152-49171 | None:intergenic | 45.0% | |
| TTGCATGTGCATGTCGTCTT+TGG | - | tig0021499:49153-49172 | Msa1392380:CDS | 45.0% | |
| TTGACACTAGACATCGGAAC+TGG | + | tig0021499:50297-50316 | None:intergenic | 45.0% | |
| ACAGCCACTGCATGAACATA+TGG | + | tig0021499:50590-50609 | None:intergenic | 45.0% | |
| GCAATATGTTCTGGCATGGA+AGG | - | tig0021499:52084-52103 | Msa1392380:intron | 45.0% | |
| GAGCATTCAGAATCATGCAC+TGG | + | tig0021499:52265-52284 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | + | tig0021499:52297-52316 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | + | tig0021499:52568-52587 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | + | tig0021499:52578-52597 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | - | tig0021499:52575-52594 | Msa1392380:intron | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | - | tig0021499:52584-52603 | Msa1392380:intron | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | + | tig0021499:52588-52607 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAAACAGTCA+AGG | - | tig0021499:52914-52933 | Msa1392380:CDS | 45.0% | |
| CAGTTGCAAAACAGTCAAGG+AGG | - | tig0021499:52917-52936 | Msa1392380:CDS | 45.0% | |
| AATAAAACGCCGACGAACGG+AGG | - | tig0021499:48560-48579 | Msa1392380:CDS | 50.0% | |
| CATTGCAAACCTCCGTTCGT+CGG | + | tig0021499:48572-48591 | None:intergenic | 50.0% | |
| GACATGCACATGCAAAAGGC+TGG | + | tig0021499:49148-49167 | None:intergenic | 50.0% | |
| GGCTAAGATGGAGCTATCCT+TGG | - | tig0021499:50233-50252 | Msa1392380:intron | 50.0% | |
| CACTAGACATCGGAACTGGT+TGG | + | tig0021499:50293-50312 | None:intergenic | 50.0% | |
| GTTCATGCAGTGGCTGTCTT+CGG | - | tig0021499:50593-50612 | Msa1392380:CDS | 50.0% | |
| CGACGAACGGAGGTTTGCAA+TGG | - | tig0021499:48570-48589 | Msa1392380:CDS | 55.0% | |
| ! | TCGGAACTGGTTGGTGTGTG+AGG | + | tig0021499:50284-50303 | None:intergenic | 55.0% |
| GGACTGTGAACCCGTTGACA+AGG | - | tig0021499:50341-50360 | Msa1392380:intron | 55.0% | |
| TCGTAGCCAGCACTCCAACT+GGG | - | tig0021499:50424-50443 | Msa1392380:intron | 55.0% | |
| GTAGAACCCAGTTGGAGTGC+TGG | + | tig0021499:50433-50452 | None:intergenic | 55.0% | |
| ! | GGCATGGAAGGCACAAACAC+AGG | - | tig0021499:52096-52115 | Msa1392380:intron | 55.0% |
| ! | TCAGCACGGGCTGAATGACT+TGG | + | tig0021499:52349-52368 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | + | tig0021499:52363-52382 | None:intergenic | 55.0% | |
| !! | GGAGTGCTGGCTACGACAAG+AGG | + | tig0021499:50420-50439 | None:intergenic | 60.0% |
| GTCGTAGCCAGCACTCCAAC+TGG | - | tig0021499:50423-50442 | Msa1392380:intron | 60.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | - | tig0021499:52350-52369 | Msa1392380:intron | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | + | tig0021499:52362-52381 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021499 | gene | 48550 | 52954 | 48550 | ID=Msa1392380;Name=Msa1392380 |
| tig0021499 | mRNA | 48550 | 52954 | 48550 | ID=Msa1392380-mRNA-1;Parent=Msa1392380;Name=Msa1392380-mRNA-1;_AED=0.15;_eAED=0.16;_QI=2|0|0|1|0.9|0.90|11|0|404 |
| tig0021499 | exon | 52831 | 52954 | 52831 | ID=Msa1392380-mRNA-1:exon:13159;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 51378 | 51453 | 51378 | ID=Msa1392380-mRNA-1:exon:13158;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 51195 | 51288 | 51195 | ID=Msa1392380-mRNA-1:exon:13157;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 50992 | 51110 | 50992 | ID=Msa1392380-mRNA-1:exon:13156;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 50533 | 50703 | 50533 | ID=Msa1392380-mRNA-1:exon:13155;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 49525 | 49614 | 49525 | ID=Msa1392380-mRNA-1:exon:13154;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 49330 | 49419 | 49330 | ID=Msa1392380-mRNA-1:exon:13153;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 49111 | 49251 | 49111 | ID=Msa1392380-mRNA-1:exon:13152;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 48888 | 49012 | 48888 | ID=Msa1392380-mRNA-1:exon:13151;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 48750 | 48816 | 48750 | ID=Msa1392380-mRNA-1:exon:13150;Parent=Msa1392380-mRNA-1 |
| tig0021499 | exon | 48550 | 48666 | 48550 | ID=Msa1392380-mRNA-1:exon:13149;Parent=Msa1392380-mRNA-1 |
| tig0021499 | five_prime_UTR | 52953 | 52954 | 52953 | ID=Msa1392380-mRNA-1:five_prime_utr;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 52831 | 52952 | 52831 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 51378 | 51453 | 51378 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 51195 | 51288 | 51195 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 50992 | 51110 | 50992 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 50533 | 50703 | 50533 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 49525 | 49614 | 49525 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 49330 | 49419 | 49330 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 49111 | 49251 | 49111 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 48888 | 49012 | 48888 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 48750 | 48816 | 48750 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| tig0021499 | CDS | 48550 | 48666 | 48550 | ID=Msa1392380-mRNA-1:cds;Parent=Msa1392380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
