Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249720 | KEH28584.1 | 92.798 | 361 | 25 | 1 | 17 | 377 | 1 | 360 | 0.0 | 699 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249720 | A0A072UFQ5 | 92.798 | 361 | 25 | 1 | 17 | 377 | 1 | 360 | 0.0 | 699 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063140 | Msa0249720 | 0.837490 | 5.039533e-57 | -8.615850e-47 |
| Msa0249720 | Msa0461160 | 0.817799 | 2.733925e-52 | -8.615850e-47 |
| Msa0249720 | Msa0660560 | 0.972393 | 1.081359e-134 | -8.615850e-47 |
| Msa0249720 | Msa1392380 | 0.954136 | 5.821372e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0249720 | MtrunA17_Chr4g0002051 | 84.076 | 314 | 16 | 2 | 97 | 377 | 9 | 321 | 0.0 | 535 |
| Msa0249720 | MtrunA17_Chr8g0381471 | 95.480 | 177 | 8 | 0 | 201 | 377 | 1 | 177 | 5.08e-125 | 357 |
| Msa0249720 | MtrunA17_Chr4g0002061 | 87.000 | 100 | 13 | 0 | 1 | 100 | 14 | 113 | 7.24e-58 | 184 |
| Msa0249720 | MtrunA17_Chr2g0287671 | 33.852 | 257 | 138 | 12 | 149 | 377 | 183 | 435 | 1.81e-29 | 118 |
| Msa0249720 | MtrunA17_Chr8g0361701 | 37.762 | 143 | 81 | 3 | 187 | 329 | 108 | 242 | 7.81e-24 | 99.0 |
| Msa0249720 | MtrunA17_Chr8g0349211 | 32.990 | 97 | 60 | 2 | 196 | 288 | 9 | 104 | 2.19e-13 | 66.6 |
| Msa0249720 | MtrunA17_Chr7g0225291 | 26.144 | 306 | 198 | 15 | 70 | 359 | 232 | 525 | 5.81e-13 | 70.1 |
| Msa0249720 | MtrunA17_Chr5g0406671 | 22.897 | 214 | 158 | 6 | 149 | 359 | 271 | 480 | 9.97e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATACCATAACAAGTTTA+TGG | 0.178722 | 2_2:+37127692 | Msa0249720:CDS |
| CCTAGTCACTCCGAATGATT+TGG | 0.276768 | 2_2:+37128138 | Msa0249720:CDS |
| GATAGCATTGGATTTGATAT+TGG | 0.305750 | 2_2:+37128424 | Msa0249720:CDS |
| TTAGGAATGATTGTGGAATA+TGG | 0.306351 | 2_2:+37128247 | Msa0249720:intron |
| TTACTTACACTAGGAATAAA+AGG | 0.320416 | 2_2:-37126112 | None:intergenic |
| TCTCTTGTTCCTTCACAGTA+TGG | 0.328040 | 2_2:-37126436 | None:intergenic |
| GACACTCACAGTAAATTATA+TGG | 0.333918 | 2_2:+37126088 | Msa0249720:CDS |
| CAGTGAAGAAGACATAAATA+TGG | 0.342237 | 2_2:+37125662 | Msa0249720:intron |
| GTGAGTTTGTACCGAGAAAA+TGG | 0.351582 | 2_2:-37127532 | None:intergenic |
| TTGGCTTTAGGCTTTGTATA+TGG | 0.351595 | 2_2:+37128045 | Msa0249720:intron |
| GTCGTAGCCAGCACTCCAAC+TGG | 0.353438 | 2_2:+37126037 | Msa0249720:CDS |
| GAAAAGAAATATTTGAAGAT+TGG | 0.359106 | 2_2:+37125697 | Msa0249720:CDS |
| AAATACCATAACAAGTTTAT+GGG | 0.365331 | 2_2:+37127693 | Msa0249720:CDS |
| AGGTCCCCATAAACTTGTTA+TGG | 0.415010 | 2_2:-37127698 | None:intergenic |
| CGGAGTGACTAGGCTAAATT+CGG | 0.418219 | 2_2:-37128128 | None:intergenic |
| GTCTCATTCAATAAGTTTGA+AGG | 0.422134 | 2_2:-37128449 | None:intergenic |
| CTAGTCACTCCGAATGATTT+GGG | 0.432092 | 2_2:+37128139 | Msa0249720:CDS |
| GATGCGAAGCATTAAGAAAC+TGG | 0.441723 | 2_2:+37127935 | Msa0249720:CDS |
| TTGTGGATTTGGTACCAGAT+AGG | 0.443107 | 2_2:+37124283 | Msa0249720:CDS |
| AGGCTAAATTCGGATATGTT+CGG | 0.457136 | 2_2:-37128118 | None:intergenic |
| GTCATTCAGCCCGTGCTGAC+AGG | 0.457526 | 2_2:+37127913 | Msa0249720:CDS |
| GGCTAAGATGGAGCTATCCT+TGG | 0.458948 | 2_2:+37125847 | Msa0249720:CDS |
| AAAACAAAGGATGGCTAAGA+TGG | 0.462193 | 2_2:+37125835 | Msa0249720:CDS |
| GCCTGCATTCCCAAATCATT+CGG | 0.464260 | 2_2:-37128148 | None:intergenic |
| TCTATCATAGCAATATGTTC+TGG | 0.467480 | 2_2:+37127638 | Msa0249720:intron |
| ATAATTTACTGTGAGTGTCT+TGG | 0.468217 | 2_2:-37126084 | None:intergenic |
| CTTATTGAATGAGACAACTT+TGG | 0.469819 | 2_2:+37128457 | Msa0249720:CDS |
| TCCGAATGATTTGGGAATGC+AGG | 0.472595 | 2_2:+37128147 | Msa0249720:CDS |
| TACCTTTGAAATCTTATCAA+AGG | 0.474112 | 2_2:-37127718 | None:intergenic |
| GTAGAACCCAGTTGGAGTGC+TGG | 0.478262 | 2_2:-37126044 | None:intergenic |
| TTCAATGTTAGGAATGATTG+TGG | 0.482902 | 2_2:+37128240 | Msa0249720:intron |
| TCTGGTACCAAATCCACAAA+AGG | 0.506332 | 2_2:-37124279 | None:intergenic |
| TGAAATAAAACGCCGACGAA+CGG | 0.507912 | 2_2:+37124188 | Msa0249720:CDS |
| ATGGGTCATAAAGTGGATGA+TGG | 0.508546 | 2_2:+37128266 | Msa0249720:CDS |
| TCAGCACGGGCTGAATGACT+TGG | 0.509750 | 2_2:-37127909 | None:intergenic |
| TCTTGGTCAAGCATTTCTCT+AGG | 0.517758 | 2_2:-37126478 | None:intergenic |
| AAAATAAGATTACTACGTCT+TGG | 0.519892 | 2_2:-37126495 | None:intergenic |
| TTGACACTAGACATCGGAAC+TGG | 0.520973 | 2_2:-37125908 | None:intergenic |
| TATCCCTTTGATCTCTTCCA+AGG | 0.525111 | 2_2:-37125864 | None:intergenic |
| CATAAATATGGATTCCAACA+AGG | 0.526400 | 2_2:+37125674 | Msa0249720:CDS |
| TATCCTTGGAAGAGATCAAA+GGG | 0.526992 | 2_2:+37125861 | Msa0249720:CDS |
| ATTACCTCATGTTCACATGT+TGG | 0.530470 | 2_2:-37125723 | None:intergenic |
| GACCTTTGATAAGATTTCAA+AGG | 0.535769 | 2_2:+37127716 | Msa0249720:CDS |
| CCAAATCATTCGGAGTGACT+AGG | 0.536951 | 2_2:-37128138 | None:intergenic |
| TACAAGACTCAGGATAGCAT+TGG | 0.545324 | 2_2:+37128412 | Msa0249720:CDS |
| GCAATATGTTCTGGCATGGA+AGG | 0.545775 | 2_2:+37127647 | Msa0249720:intron |
| TAGGAATGATTGTGGAATAT+GGG | 0.546242 | 2_2:+37128248 | Msa0249720:intron |
| TGTCAAAGTCGATCACAAGC+AGG | 0.547083 | 2_2:-37127857 | None:intergenic |
| TGCTTCGCATCCTGTCAGCA+CGG | 0.548361 | 2_2:-37127923 | None:intergenic |
| GTGGAATATGGGTCATAAAG+TGG | 0.551770 | 2_2:+37128259 | Msa0249720:CDS |
| GCTTCGCATCCTGTCAGCAC+GGG | 0.553266 | 2_2:-37127922 | None:intergenic |
| CATAGCAATATGTTCTGGCA+TGG | 0.557578 | 2_2:+37127643 | Msa0249720:intron |
| CATTGCAAACCTCCGTTCGT+CGG | 0.559198 | 2_2:-37124200 | None:intergenic |
| TGTATGTTATAGGTTGATGA+AGG | 0.572157 | 2_2:+37128389 | Msa0249720:intron |
| GATCTAATGTAGAACCCAGT+TGG | 0.573469 | 2_2:-37126052 | None:intergenic |
| TTGATGAAGGTACAAGACTC+AGG | 0.574689 | 2_2:+37128402 | Msa0249720:CDS |
| CTATCCTTGGAAGAGATCAA+AGG | 0.582658 | 2_2:+37125860 | Msa0249720:CDS |
| ATAAATATGGATTCCAACAA+GGG | 0.583084 | 2_2:+37125675 | Msa0249720:CDS |
| TGGCAGTTGCAAAACAGTCA+AGG | 0.585684 | 2_2:+37128477 | Msa0249720:CDS |
| ATAAAGTGGATGATGGAAAG+AGG | 0.602413 | 2_2:+37128273 | Msa0249720:CDS |
| TCGTAGCCAGCACTCCAACT+GGG | 0.605063 | 2_2:+37126038 | Msa0249720:CDS |
| ACAGGAGCTAAAACAAAGGA+TGG | 0.609797 | 2_2:+37125826 | Msa0249720:intron |
| TCGGAACTGGTTGGTGTGTG+AGG | 0.609902 | 2_2:-37125895 | None:intergenic |
| GGCATGGAAGGCACAAACAC+AGG | 0.610947 | 2_2:+37127659 | Msa0249720:CDS |
| AATACCATAACAAGTTTATG+GGG | 0.611042 | 2_2:+37127694 | Msa0249720:CDS |
| CACTAGACATCGGAACTGGT+TGG | 0.615732 | 2_2:-37125904 | None:intergenic |
| GGAGTGCTGGCTACGACAAG+AGG | 0.618013 | 2_2:-37126031 | None:intergenic |
| GAATCCAACATGTGAACATG+AGG | 0.618024 | 2_2:+37125719 | Msa0249720:CDS |
| GTATATGGAAGAGTTCCTCA+TGG | 0.622722 | 2_2:+37128060 | Msa0249720:CDS |
| GAGCATTCAGAATCATGCAC+TGG | 0.624661 | 2_2:-37127825 | None:intergenic |
| GTGAACAGGAGCTAAAACAA+AGG | 0.629847 | 2_2:+37125822 | Msa0249720:intron |
| AATAAAACGCCGACGAACGG+AGG | 0.630467 | 2_2:+37124191 | Msa0249720:CDS |
| ATGATTCTGAATGCTCACAT+TGG | 0.634837 | 2_2:+37127832 | Msa0249720:CDS |
| CGACGAACGGAGGTTTGCAA+TGG | 0.641886 | 2_2:+37124201 | Msa0249720:CDS |
| TCAGACATACCATACTGTGA+AGG | 0.650977 | 2_2:+37126427 | Msa0249720:CDS |
| AGTTGCAAAACAGTCAAGGA+GGG | 0.665111 | 2_2:+37128481 | Msa0249720:CDS |
| GTTTGTACCGAGAAAATGGT+CGG | 0.671456 | 2_2:-37127528 | None:intergenic |
| CAGTTGCAAAACAGTCAAGG+AGG | 0.684092 | 2_2:+37128480 | Msa0249720:CDS |
| ATACTGTGAAGGAACAAGAG+AGG | 0.703777 | 2_2:+37126438 | Msa0249720:CDS |
| TCAGCATTGACACTAGACAT+CGG | 0.708624 | 2_2:-37125914 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATTA+TGG | + | chr2_2:37126620-37126639 | Msa0249720:intron | 0.0% |
| !!! | TCATTTTATATTTTAAATTG+CGG | + | chr2_2:37125005-37125024 | Msa0249720:intron | 10.0% |
| !!! | TATTATTATTTTTCTTTCAT+TGG | + | chr2_2:37125379-37125398 | Msa0249720:intron | 10.0% |
| !! | ACAAATCTAATTAAATTAAT+AGG | - | chr2_2:37127572-37127591 | None:intergenic | 10.0% |
| !! | TATAAACATACATAATTATA+AGG | - | chr2_2:37127972-37127991 | None:intergenic | 10.0% |
| !! | ATTATCAAATATATATGAAC+TGG | - | chr2_2:37125256-37125275 | None:intergenic | 15.0% |
| !!! | TATTTTGAATATGCATATTA+TGG | + | chr2_2:37127044-37127063 | Msa0249720:intron | 15.0% |
| !!! | TAATAAGGATTTTAAATGAA+AGG | + | chr2_2:37127181-37127200 | Msa0249720:intron | 15.0% |
| !! | TGATATAAAATTTGTATTGA+AGG | - | chr2_2:37128007-37128026 | None:intergenic | 15.0% |
| !! | AAATATGATATGTATGTTAT+AGG | + | chr2_2:37128379-37128398 | Msa0249720:intron | 15.0% |
| !! | ACAAACAAATCACAATTATA+AGG | - | chr2_2:37124322-37124341 | None:intergenic | 20.0% |
| !! | AGAAGATAAATCAGTATATT+TGG | - | chr2_2:37124420-37124439 | None:intergenic | 20.0% |
| !! | AAGTTCTTGTAATATAAGTT+GGG | - | chr2_2:37124490-37124509 | None:intergenic | 20.0% |
| !! | AAAGTTCTTGTAATATAAGT+TGG | - | chr2_2:37124491-37124510 | None:intergenic | 20.0% |
| !! | ATATTACAAGAACTTTGTAA+TGG | + | chr2_2:37124600-37124619 | Msa0249720:intron | 20.0% |
| !! | TGCTTATATATTATAAACTG+CGG | + | chr2_2:37124643-37124662 | Msa0249720:intron | 20.0% |
| !!! | ATAAACAGTAATTTAAGTTG+CGG | - | chr2_2:37125036-37125055 | None:intergenic | 20.0% |
| !!! | TCTTTCATTGGTTTTTATTT+TGG | + | chr2_2:37125391-37125410 | Msa0249720:intron | 20.0% |
| !! | AGAAAAAAGAGCTAAAAAAT+AGG | - | chr2_2:37125531-37125550 | None:intergenic | 20.0% |
| !! | GAAAAGAAATATTTGAAGAT+TGG | + | chr2_2:37125697-37125716 | Msa0249720:CDS | 20.0% |
| !! | ATTTGTAGTATCAATTCATA+CGG | + | chr2_2:37125748-37125767 | Msa0249720:intron | 20.0% |
| !! | AGAAAGAAAAAAATAGCAAA+TGG | - | chr2_2:37126536-37126555 | None:intergenic | 20.0% |
| !!! | AAACAAGGTCTTATATATTA+AGG | + | chr2_2:37126668-37126687 | Msa0249720:intron | 20.0% |
| !!! | AATTTTCAATCATGTATATC+AGG | - | chr2_2:37127084-37127103 | None:intergenic | 20.0% |
| !!! | TGTTACTTTGAAAACTAATA+AGG | + | chr2_2:37127166-37127185 | Msa0249720:intron | 20.0% |
| !! | AAAATACCATAACAAGTTTA+TGG | + | chr2_2:37127692-37127711 | Msa0249720:CDS | 20.0% |
| !! | AAATACCATAACAAGTTTAT+GGG | + | chr2_2:37127693-37127712 | Msa0249720:CDS | 20.0% |
| !! | TACATTCACAGATAATATTT+AGG | - | chr2_2:37127791-37127810 | None:intergenic | 20.0% |
| !!! | AAATTTGTATTGAAGGTATA+AGG | - | chr2_2:37128000-37128019 | None:intergenic | 20.0% |
| !! | TAATCATGAAATTCAATGTT+AGG | + | chr2_2:37128229-37128248 | Msa0249720:intron | 20.0% |
| !! | AAATACAAAAGCAATTGAAA+AGG | - | chr2_2:37128334-37128353 | None:intergenic | 20.0% |
| ! | TTGCGCAAGTTTAAATTTAA+CGG | - | chr2_2:37124445-37124464 | None:intergenic | 25.0% |
| ! | ATATTACAAGAACTTTGCAA+TGG | + | chr2_2:37124495-37124514 | Msa0249720:intron | 25.0% |
| ! | AAGTTCTTGTAATATAAGCT+GGG | - | chr2_2:37124595-37124614 | None:intergenic | 25.0% |
| ! | AAAGTTCTTGTAATATAAGC+TGG | - | chr2_2:37124596-37124615 | None:intergenic | 25.0% |
| ! | AGGAAAATTGATCAAAGTTA+CGG | - | chr2_2:37124673-37124692 | None:intergenic | 25.0% |
| !! | TCACACATGTATAAAGTTTT+AGG | - | chr2_2:37124693-37124712 | None:intergenic | 25.0% |
| !! | TGTAAAAAAGTATACGCAAA+TGG | + | chr2_2:37124878-37124897 | Msa0249720:intron | 25.0% |
| ! | CATGATTTAAGAATTCTACA+GGG | - | chr2_2:37125075-37125094 | None:intergenic | 25.0% |
| ! | ACATGATTTAAGAATTCTAC+AGG | - | chr2_2:37125076-37125095 | None:intergenic | 25.0% |
| !! | ATTGATTTATCTATGTAGCA+TGG | + | chr2_2:37125298-37125317 | Msa0249720:intron | 25.0% |
| ! | TTGATTTATCTATGTAGCAT+GGG | + | chr2_2:37125299-37125318 | Msa0249720:intron | 25.0% |
| ! | AGTCAAAATTAACCAAACAA+AGG | - | chr2_2:37125479-37125498 | None:intergenic | 25.0% |
| ! | AACATTACAAAAAAATCACG+TGG | - | chr2_2:37125575-37125594 | None:intergenic | 25.0% |
| ! | ATAAATATGGATTCCAACAA+GGG | + | chr2_2:37125675-37125694 | Msa0249720:CDS | 25.0% |
| !! | AAATATTTCTTTTCCCTTGT+TGG | - | chr2_2:37125691-37125710 | None:intergenic | 25.0% |
| ! | TTACTTACACTAGGAATAAA+AGG | - | chr2_2:37126115-37126134 | None:intergenic | 25.0% |
| ! | AAAGGTAAATTACTTACACT+AGG | - | chr2_2:37126124-37126143 | None:intergenic | 25.0% |
| ! | ATAGCAAATGAGTAACATAA+AGG | - | chr2_2:37126142-37126161 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTTGCAGCAAAC+AGG | + | chr2_2:37126393-37126412 | Msa0249720:intron | 25.0% |
| ! | AAAATAAGATTACTACGTCT+TGG | - | chr2_2:37126498-37126517 | None:intergenic | 25.0% |
| !!! | GTTATTTTTCTTCCTGTATA+TGG | + | chr2_2:37126571-37126590 | Msa0249720:intron | 25.0% |
| !! | CACAACACAATTACTAATTT+TGG | - | chr2_2:37127241-37127260 | None:intergenic | 25.0% |
| !! | CCTTTTAACAAAACTGTATT+TGG | - | chr2_2:37127299-37127318 | None:intergenic | 25.0% |
| !!! | CCAAATACAGTTTTGTTAAA+AGG | + | chr2_2:37127296-37127315 | Msa0249720:intron | 25.0% |
| ! | AAAGGATGAATATTCTTCAT+TGG | + | chr2_2:37127314-37127333 | Msa0249720:intron | 25.0% |
| ! | AATACCATAACAAGTTTATG+GGG | + | chr2_2:37127694-37127713 | Msa0249720:CDS | 25.0% |
| !!! | TACCTTTGAAATCTTATCAA+AGG | - | chr2_2:37127721-37127740 | None:intergenic | 25.0% |
| ! | ATATCACTAACAAACATTGT+TGG | + | chr2_2:37128026-37128045 | Msa0249720:intron | 25.0% |
| !!! | TCCTTTTTTTTGTCTGAAGA+GGG | - | chr2_2:37124240-37124259 | None:intergenic | 30.0% |
| !!! | AAAAAAGGAGCAGTTTTTTC+AGG | + | chr2_2:37124251-37124270 | Msa0249720:CDS | 30.0% |
| !!! | AAAAAGGAGCAGTTTTTTCA+GGG | + | chr2_2:37124252-37124271 | Msa0249720:CDS | 30.0% |
| AAAGTGCATTATCATATTGC+TGG | + | chr2_2:37124393-37124412 | Msa0249720:intron | 30.0% | |
| !!! | ATAGCTTTTTCGCAAGATTT+CGG | + | chr2_2:37124545-37124564 | Msa0249720:intron | 30.0% |
| TGGGAAATTGATCAAAGTAT+CGG | - | chr2_2:37124576-37124595 | None:intergenic | 30.0% | |
| TACAAGAACTTTGTAATGGT+TGG | + | chr2_2:37124604-37124623 | Msa0249720:intron | 30.0% | |
| AAAATTGATCAAAGTTACGG+TGG | - | chr2_2:37124670-37124689 | None:intergenic | 30.0% | |
| AAAACATTAGGATCATTCTG+TGG | + | chr2_2:37124831-37124850 | Msa0249720:intron | 30.0% | |
| !! | TATCAGCATTTTGATGTTTG+CGG | + | chr2_2:37124982-37125001 | Msa0249720:intron | 30.0% |
| AATGTATCAGACAAGAATGA+TGG | + | chr2_2:37125110-37125129 | Msa0249720:intron | 30.0% | |
| TTCATCAAAATAACACGAAC+AGG | + | chr2_2:37125187-37125206 | Msa0249720:intron | 30.0% | |
| !!! | ATGTGGCTATTTTTTTGGAA+AGG | - | chr2_2:37125453-37125472 | None:intergenic | 30.0% |
| CAGTGAAGAAGACATAAATA+TGG | + | chr2_2:37125662-37125681 | Msa0249720:intron | 30.0% | |
| CATAAATATGGATTCCAACA+AGG | + | chr2_2:37125674-37125693 | Msa0249720:CDS | 30.0% | |
| !! | TAATTTGCTAACATGTGAAC+AGG | + | chr2_2:37125808-37125827 | Msa0249720:intron | 30.0% |
| CCATCAGGTAAAAACAAAAA+CGG | + | chr2_2:37126001-37126020 | Msa0249720:intron | 30.0% | |
| ATAATTTACTGTGAGTGTCT+TGG | - | chr2_2:37126087-37126106 | None:intergenic | 30.0% | |
| GACACTCACAGTAAATTATA+TGG | + | chr2_2:37126088-37126107 | Msa0249720:CDS | 30.0% | |
| ! | GATATGGCATCTTATTTGTT+TGG | + | chr2_2:37126274-37126293 | Msa0249720:intron | 30.0% |
| ACTGTCATCATGATTTAGTT+AGG | + | chr2_2:37126966-37126985 | Msa0249720:intron | 30.0% | |
| ! | CAAGCATTTTCACATTTAGA+TGG | - | chr2_2:37127387-37127406 | None:intergenic | 30.0% |
| CATCTAAATGTGAAAATGCT+TGG | + | chr2_2:37127385-37127404 | Msa0249720:intron | 30.0% | |
| AAGAATGAAGTGACAAAAAG+AGG | + | chr2_2:37127492-37127511 | Msa0249720:CDS | 30.0% | |
| AAGTGACAAAAAGAGGAATT+TGG | + | chr2_2:37127499-37127518 | Msa0249720:CDS | 30.0% | |
| TCTATCATAGCAATATGTTC+TGG | + | chr2_2:37127638-37127657 | Msa0249720:intron | 30.0% | |
| GACCTTTGATAAGATTTCAA+AGG | + | chr2_2:37127716-37127735 | Msa0249720:CDS | 30.0% | |
| AATATCATTACACGACACAT+AGG | + | chr2_2:37127752-37127771 | Msa0249720:intron | 30.0% | |
| !! | TAACAAACATTGTTGGCTTT+AGG | + | chr2_2:37128033-37128052 | Msa0249720:intron | 30.0% |
| ! | ACTCCTCTTTTTATATGACT+TGG | + | chr2_2:37128083-37128102 | Msa0249720:CDS | 30.0% |
| TGTCCAAGTCATATAAAAAG+AGG | - | chr2_2:37128089-37128108 | None:intergenic | 30.0% | |
| TTCAATGTTAGGAATGATTG+TGG | + | chr2_2:37128240-37128259 | Msa0249720:intron | 30.0% | |
| TTAGGAATGATTGTGGAATA+TGG | + | chr2_2:37128247-37128266 | Msa0249720:intron | 30.0% | |
| TAGGAATGATTGTGGAATAT+GGG | + | chr2_2:37128248-37128267 | Msa0249720:intron | 30.0% | |
| !! | TGTATGTTATAGGTTGATGA+AGG | + | chr2_2:37128389-37128408 | Msa0249720:intron | 30.0% |
| ! | GATAGCATTGGATTTGATAT+TGG | + | chr2_2:37128424-37128443 | Msa0249720:CDS | 30.0% |
| GTCTCATTCAATAAGTTTGA+AGG | - | chr2_2:37128452-37128471 | None:intergenic | 30.0% | |
| CTTATTGAATGAGACAACTT+TGG | + | chr2_2:37128457-37128476 | Msa0249720:CDS | 30.0% | |
| ACCCTCTTCAGACAAAAAAA+AGG | + | chr2_2:37124236-37124255 | Msa0249720:CDS | 35.0% | |
| !!! | CTCCTTTTTTTTGTCTGAAG+AGG | - | chr2_2:37124241-37124260 | None:intergenic | 35.0% |
| GAAAAAGATGAGTACCTATC+TGG | - | chr2_2:37124300-37124319 | None:intergenic | 35.0% | |
| CTTGCGAAAAAGCTATCTAA+TGG | - | chr2_2:37124541-37124560 | None:intergenic | 35.0% | |
| ACATATCTGTCTGTTAGACA+TGG | + | chr2_2:37124712-37124731 | Msa0249720:intron | 35.0% | |
| !! | TGTTAGACATGGTTTTACGA+TGG | + | chr2_2:37124723-37124742 | Msa0249720:intron | 35.0% |
| !! | GTTAGACATGGTTTTACGAT+GGG | + | chr2_2:37124724-37124743 | Msa0249720:intron | 35.0% |
| !! | TTTACGATGGGTTATCATAG+AGG | + | chr2_2:37124736-37124755 | Msa0249720:intron | 35.0% |
| !! | TTACGATGGGTTATCATAGA+GGG | + | chr2_2:37124737-37124756 | Msa0249720:intron | 35.0% |
| ! | ATGTTTTCGATTGATCAGCA+CGG | - | chr2_2:37124818-37124837 | None:intergenic | 35.0% |
| GCTGATCAATCGAAAACATT+AGG | + | chr2_2:37124819-37124838 | Msa0249720:intron | 35.0% | |
| ATCATACAATGCGTCTGAAA+AGG | + | chr2_2:37124941-37124960 | Msa0249720:intron | 35.0% | |
| TTGGAAAGGAATGTACATGT+GGG | - | chr2_2:37125439-37125458 | None:intergenic | 35.0% | |
| TTTGGAAAGGAATGTACATG+TGG | - | chr2_2:37125440-37125459 | None:intergenic | 35.0% | |
| !!! | GGTACATGTGGCTATTTTTT+TGG | - | chr2_2:37125458-37125477 | None:intergenic | 35.0% |
| ! | TAACCAAACAAAGGTACATG+TGG | - | chr2_2:37125470-37125489 | None:intergenic | 35.0% |
| TCACGTGGTCAACAATTAAA+TGG | - | chr2_2:37125560-37125579 | None:intergenic | 35.0% | |
| ATTACCTCATGTTCACATGT+TGG | - | chr2_2:37125726-37125745 | None:intergenic | 35.0% | |
| AAAACAAAGGATGGCTAAGA+TGG | + | chr2_2:37125835-37125854 | Msa0249720:CDS | 35.0% | |
| TATCCTTGGAAGAGATCAAA+GGG | + | chr2_2:37125861-37125880 | Msa0249720:CDS | 35.0% | |
| TGATAAGGAAGATGGCAATA+AGG | + | chr2_2:37125934-37125953 | Msa0249720:intron | 35.0% | |
| !!! | CCGTTTTTGTTTTTACCTGA+TGG | - | chr2_2:37126004-37126023 | None:intergenic | 35.0% |
| TTCAAAGTCATTGCTTTCAC+TGG | - | chr2_2:37126241-37126260 | None:intergenic | 35.0% | |
| TGACTAACTCATCAGTTGAA+TGG | - | chr2_2:37126300-37126319 | None:intergenic | 35.0% | |
| TAGAAACTGAGACCATATAC+AGG | - | chr2_2:37126586-37126605 | None:intergenic | 35.0% | |
| TGACAATGACAGATGAAACA+AGG | + | chr2_2:37126653-37126672 | Msa0249720:intron | 35.0% | |
| GAAACTCGTTGGCATTTAAA+TGG | + | chr2_2:37126736-37126755 | Msa0249720:intron | 35.0% | |
| AGAGTGATGCATATGTGAAA+AGG | + | chr2_2:37127272-37127291 | Msa0249720:intron | 35.0% | |
| ATGATTCTGAATGCTCACAT+TGG | + | chr2_2:37127832-37127851 | Msa0249720:CDS | 35.0% | |
| !! | TTGGCTTTAGGCTTTGTATA+TGG | + | chr2_2:37128045-37128064 | Msa0249720:intron | 35.0% |
| TATAAAAAGAGGAGTCCATG+AGG | - | chr2_2:37128078-37128097 | None:intergenic | 35.0% | |
| AGGCTAAATTCGGATATGTT+CGG | - | chr2_2:37128121-37128140 | None:intergenic | 35.0% | |
| !! | ATAAAGTGGATGATGGAAAG+AGG | + | chr2_2:37128273-37128292 | Msa0249720:CDS | 35.0% |
| !!! | TCGGCGTTTTATTTCAACCA+TGG | - | chr2_2:37124184-37124203 | None:intergenic | 40.0% |
| TGAAATAAAACGCCGACGAA+CGG | + | chr2_2:37124188-37124207 | Msa0249720:CDS | 40.0% | |
| !! | TTTTCAGGGAAGACCTTTTG+TGG | + | chr2_2:37124266-37124285 | Msa0249720:CDS | 40.0% |
| TCTGGTACCAAATCCACAAA+AGG | - | chr2_2:37124282-37124301 | None:intergenic | 40.0% | |
| ! | TTGTGGATTTGGTACCAGAT+AGG | + | chr2_2:37124283-37124302 | Msa0249720:CDS | 40.0% |
| ATGATCAAGCTCAACGACAT+AGG | - | chr2_2:37124926-37124945 | None:intergenic | 40.0% | |
| TAGCCACATGTACCTTTGTT+TGG | + | chr2_2:37125464-37125483 | Msa0249720:intron | 40.0% | |
| GAATCCAACATGTGAACATG+AGG | + | chr2_2:37125719-37125738 | Msa0249720:CDS | 40.0% | |
| GTGAACAGGAGCTAAAACAA+AGG | + | chr2_2:37125822-37125841 | Msa0249720:intron | 40.0% | |
| ACAGGAGCTAAAACAAAGGA+TGG | + | chr2_2:37125826-37125845 | Msa0249720:intron | 40.0% | |
| CTATCCTTGGAAGAGATCAA+AGG | + | chr2_2:37125860-37125879 | Msa0249720:CDS | 40.0% | |
| TATCCCTTTGATCTCTTCCA+AGG | - | chr2_2:37125867-37125886 | None:intergenic | 40.0% | |
| !! | TCAGCATTGACACTAGACAT+CGG | - | chr2_2:37125917-37125936 | None:intergenic | 40.0% |
| GTCTAGTGTCAATGCTGATA+AGG | + | chr2_2:37125919-37125938 | Msa0249720:intron | 40.0% | |
| GTCAATGCTGATAAGGAAGA+TGG | + | chr2_2:37125926-37125945 | Msa0249720:intron | 40.0% | |
| CGAAACATTTCCTTGTCAAC+GGG | - | chr2_2:37125968-37125987 | None:intergenic | 40.0% | |
| CCGAAACATTTCCTTGTCAA+CGG | - | chr2_2:37125969-37125988 | None:intergenic | 40.0% | |
| CCGTTGACAAGGAAATGTTT+CGG | + | chr2_2:37125966-37125985 | Msa0249720:intron | 40.0% | |
| !!! | CGGAAAGTGTTTTTACCATC+AGG | + | chr2_2:37125986-37126005 | Msa0249720:intron | 40.0% |
| GATCTAATGTAGAACCCAGT+TGG | - | chr2_2:37126055-37126074 | None:intergenic | 40.0% | |
| !!! | GTGAGTGTCTTGGCTTTTTT+GGG | - | chr2_2:37126077-37126096 | None:intergenic | 40.0% |
| !!! | TGTGAGTGTCTTGGCTTTTT+TGG | - | chr2_2:37126078-37126097 | None:intergenic | 40.0% |
| TATGCCATATGTTCATGCAG+TGG | + | chr2_2:37126197-37126216 | Msa0249720:intron | 40.0% | |
| GAACTCTGACGAATGTGATA+TGG | + | chr2_2:37126258-37126277 | Msa0249720:intron | 40.0% | |
| TCAGACATACCATACTGTGA+AGG | + | chr2_2:37126427-37126446 | Msa0249720:CDS | 40.0% | |
| TCTCTTGTTCCTTCACAGTA+TGG | - | chr2_2:37126439-37126458 | None:intergenic | 40.0% | |
| ATACTGTGAAGGAACAAGAG+AGG | + | chr2_2:37126438-37126457 | Msa0249720:CDS | 40.0% | |
| TCTTGGTCAAGCATTTCTCT+AGG | - | chr2_2:37126481-37126500 | None:intergenic | 40.0% | |
| GTCTGAATCATGAAACTCGT+TGG | + | chr2_2:37126725-37126744 | Msa0249720:intron | 40.0% | |
| ! | GTTTTTGCCGACCATTTTCT+CGG | + | chr2_2:37127521-37127540 | Msa0249720:CDS | 40.0% |
| GTTTGTACCGAGAAAATGGT+CGG | - | chr2_2:37127531-37127550 | None:intergenic | 40.0% | |
| GTGAGTTTGTACCGAGAAAA+TGG | - | chr2_2:37127535-37127554 | None:intergenic | 40.0% | |
| CATAGCAATATGTTCTGGCA+TGG | + | chr2_2:37127643-37127662 | Msa0249720:intron | 40.0% | |
| !! | AGGTCCCCATAAACTTGTTA+TGG | - | chr2_2:37127701-37127720 | None:intergenic | 40.0% |
| ! | GATGCGAAGCATTAAGAAAC+TGG | + | chr2_2:37127935-37127954 | Msa0249720:CDS | 40.0% |
| GTATATGGAAGAGTTCCTCA+TGG | + | chr2_2:37128060-37128079 | Msa0249720:CDS | 40.0% | |
| CTAGTCACTCCGAATGATTT+GGG | + | chr2_2:37128139-37128158 | Msa0249720:CDS | 40.0% | |
| GTGGAATATGGGTCATAAAG+TGG | + | chr2_2:37128259-37128278 | Msa0249720:CDS | 40.0% | |
| ATGGGTCATAAAGTGGATGA+TGG | + | chr2_2:37128266-37128285 | Msa0249720:CDS | 40.0% | |
| ! | TTGATGAAGGTACAAGACTC+AGG | + | chr2_2:37128402-37128421 | Msa0249720:CDS | 40.0% |
| TACAAGACTCAGGATAGCAT+TGG | + | chr2_2:37128412-37128431 | Msa0249720:CDS | 40.0% | |
| AGTTGCAAAACAGTCAAGGA+GGG | + | chr2_2:37128481-37128500 | Msa0249720:CDS | 40.0% | |
| ! | GGGAAGACCTTTTGTGGATT+TGG | + | chr2_2:37124272-37124291 | Msa0249720:CDS | 45.0% |
| AGACGACATGCACATGCAAA+AGG | - | chr2_2:37124783-37124802 | None:intergenic | 45.0% | |
| TTGCATGTGCATGTCGTCTT+TGG | + | chr2_2:37124784-37124803 | Msa0249720:intron | 45.0% | |
| TTGACACTAGACATCGGAAC+TGG | - | chr2_2:37125911-37125930 | None:intergenic | 45.0% | |
| ACAGCCACTGCATGAACATA+TGG | - | chr2_2:37126204-37126223 | None:intergenic | 45.0% | |
| GCAATATGTTCTGGCATGGA+AGG | + | chr2_2:37127647-37127666 | Msa0249720:intron | 45.0% | |
| GAGCATTCAGAATCATGCAC+TGG | - | chr2_2:37127828-37127847 | None:intergenic | 45.0% | |
| TGTCAAAGTCGATCACAAGC+AGG | - | chr2_2:37127860-37127879 | None:intergenic | 45.0% | |
| CGGAGTGACTAGGCTAAATT+CGG | - | chr2_2:37128131-37128150 | None:intergenic | 45.0% | |
| CCAAATCATTCGGAGTGACT+AGG | - | chr2_2:37128141-37128160 | None:intergenic | 45.0% | |
| CCTAGTCACTCCGAATGATT+TGG | + | chr2_2:37128138-37128157 | Msa0249720:CDS | 45.0% | |
| ! | TCCGAATGATTTGGGAATGC+AGG | + | chr2_2:37128147-37128166 | Msa0249720:CDS | 45.0% |
| GCCTGCATTCCCAAATCATT+CGG | - | chr2_2:37128151-37128170 | None:intergenic | 45.0% | |
| TGGCAGTTGCAAAACAGTCA+AGG | + | chr2_2:37128477-37128496 | Msa0249720:CDS | 45.0% | |
| CAGTTGCAAAACAGTCAAGG+AGG | + | chr2_2:37128480-37128499 | Msa0249720:CDS | 45.0% | |
| AATAAAACGCCGACGAACGG+AGG | + | chr2_2:37124191-37124210 | Msa0249720:CDS | 50.0% | |
| CATTGCAAACCTCCGTTCGT+CGG | - | chr2_2:37124203-37124222 | None:intergenic | 50.0% | |
| GACATGCACATGCAAAAGGC+TGG | - | chr2_2:37124779-37124798 | None:intergenic | 50.0% | |
| GGCTAAGATGGAGCTATCCT+TGG | + | chr2_2:37125847-37125866 | Msa0249720:CDS | 50.0% | |
| CACTAGACATCGGAACTGGT+TGG | - | chr2_2:37125907-37125926 | None:intergenic | 50.0% | |
| GTTCATGCAGTGGCTGTCTT+CGG | + | chr2_2:37126207-37126226 | Msa0249720:intron | 50.0% | |
| CGACGAACGGAGGTTTGCAA+TGG | + | chr2_2:37124201-37124220 | Msa0249720:CDS | 55.0% | |
| ! | TCGGAACTGGTTGGTGTGTG+AGG | - | chr2_2:37125898-37125917 | None:intergenic | 55.0% |
| GGACTGTGAACCCGTTGACA+AGG | + | chr2_2:37125955-37125974 | Msa0249720:intron | 55.0% | |
| TCGTAGCCAGCACTCCAACT+GGG | + | chr2_2:37126038-37126057 | Msa0249720:CDS | 55.0% | |
| GTAGAACCCAGTTGGAGTGC+TGG | - | chr2_2:37126047-37126066 | None:intergenic | 55.0% | |
| ! | GGCATGGAAGGCACAAACAC+AGG | + | chr2_2:37127659-37127678 | Msa0249720:CDS | 55.0% |
| ! | TCAGCACGGGCTGAATGACT+TGG | - | chr2_2:37127912-37127931 | None:intergenic | 55.0% |
| TGCTTCGCATCCTGTCAGCA+CGG | - | chr2_2:37127926-37127945 | None:intergenic | 55.0% | |
| !! | GGAGTGCTGGCTACGACAAG+AGG | - | chr2_2:37126034-37126053 | None:intergenic | 60.0% |
| GTCGTAGCCAGCACTCCAAC+TGG | + | chr2_2:37126037-37126056 | Msa0249720:CDS | 60.0% | |
| ! | GTCATTCAGCCCGTGCTGAC+AGG | + | chr2_2:37127913-37127932 | Msa0249720:CDS | 60.0% |
| GCTTCGCATCCTGTCAGCAC+GGG | - | chr2_2:37127925-37127944 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 37124181 | 37128517 | 37124181 | ID=Msa0249720;Name=Msa0249720 |
| chr2_2 | mRNA | 37124181 | 37128517 | 37124181 | ID=Msa0249720-mRNA-1;Parent=Msa0249720;Name=Msa0249720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=2|0|0|1|0.8|0.63|11|0|377 |
| chr2_2 | exon | 37124181 | 37124304 | 37124181 | ID=Msa0249720-mRNA-1:exon:11764;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37125665 | 37125740 | 37125665 | ID=Msa0249720-mRNA-1:exon:11765;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37125830 | 37125923 | 37125830 | ID=Msa0249720-mRNA-1:exon:11766;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37126008 | 37126126 | 37126008 | ID=Msa0249720-mRNA-1:exon:11767;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37126415 | 37126504 | 37126415 | ID=Msa0249720-mRNA-1:exon:11768;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37127453 | 37127542 | 37127453 | ID=Msa0249720-mRNA-1:exon:11769;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37127648 | 37127737 | 37127648 | ID=Msa0249720-mRNA-1:exon:11770;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37127816 | 37127956 | 37127816 | ID=Msa0249720-mRNA-1:exon:11771;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37128055 | 37128179 | 37128055 | ID=Msa0249720-mRNA-1:exon:11772;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37128251 | 37128317 | 37128251 | ID=Msa0249720-mRNA-1:exon:11773;Parent=Msa0249720-mRNA-1 |
| chr2_2 | exon | 37128401 | 37128517 | 37128401 | ID=Msa0249720-mRNA-1:exon:11774;Parent=Msa0249720-mRNA-1 |
| chr2_2 | five_prime_UTR | 37124181 | 37124182 | 37124181 | ID=Msa0249720-mRNA-1:five_prime_utr;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37124183 | 37124304 | 37124183 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37125665 | 37125740 | 37125665 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37125830 | 37125923 | 37125830 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37126008 | 37126126 | 37126008 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37126415 | 37126504 | 37126415 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37127453 | 37127542 | 37127453 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37127648 | 37127737 | 37127648 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37127816 | 37127956 | 37127816 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37128055 | 37128179 | 37128055 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37128251 | 37128317 | 37128251 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| chr2_2 | CDS | 37128401 | 37128517 | 37128401 | ID=Msa0249720-mRNA-1:cds;Parent=Msa0249720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
