AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0064450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064450 MtrunA17_Chr1g0166281 100.000 150 0 0 1 150 1 150 4.78e-105 296
Msa0064450 MtrunA17_Chr1g0188171 86.577 149 20 0 1 149 1 149 1.25e-91 262
Msa0064450 MtrunA17_Chr3g0093271 78.912 147 31 0 1 147 52 198 8.03e-84 244
Msa0064450 MtrunA17_Chr3g0093271 47.692 65 34 0 12 76 136 200 1.02e-11 60.1
Msa0064450 MtrunA17_Chr6g0460211 78.378 148 32 0 1 148 1 148 2.68e-83 241
Msa0064450 MtrunA17_Chr6g0460211 47.692 65 34 0 12 76 85 149 4.14e-12 60.1
Msa0064450 MtrunA17_Chr5g0440931 77.703 148 33 0 1 148 1 148 1.42e-82 239
Msa0064450 MtrunA17_Chr5g0440931 47.692 65 34 0 12 76 85 149 4.19e-12 60.1
Msa0064450 MtrunA17_Chr7g0254731 77.027 148 34 0 1 148 1 148 1.26e-81 237
Msa0064450 MtrunA17_Chr7g0254731 47.692 65 34 0 12 76 85 149 3.29e-12 60.5
Msa0064450 MtrunA17_Chr7g0274101 67.114 149 49 0 1 149 1 149 6.31e-61 184
Msa0064450 MtrunA17_Chr1g0185001 61.905 147 55 1 1 147 1 146 2.20e-60 183
Msa0064450 MtrunA17_Chr5g0398751 42.568 148 83 1 1 148 1 146 3.52e-40 132
Msa0064450 MtrunA17_Chr8g0366401 43.537 147 80 1 5 148 10 156 4.02e-40 132
Msa0064450 MtrunA17_Chr3g0100541 48.667 150 62 1 1 150 41 175 1.35e-38 129
Msa0064450 MtrunA17_Chr7g0245231 45.205 146 80 0 5 150 23 168 9.43e-38 126
Msa0064450 MtrunA17_Chr1g0161211 49.265 136 69 0 12 147 46 181 3.47e-36 123
Msa0064450 MtrunA17_Chr1g0161211 42.857 77 44 0 69 145 30 106 6.67e-15 68.6
Msa0064450 MtrunA17_Chr4g0062221 42.553 141 79 1 8 146 7 147 1.59e-34 118
Msa0064450 MtrunA17_Chr4g0062221 43.421 76 39 2 2 76 78 150 2.48e-12 61.2
Msa0064450 MtrunA17_Chr6g0450921 45.185 135 74 0 12 146 29 163 1.78e-34 118
Msa0064450 MtrunA17_Chr6g0450921 44.444 63 35 0 84 146 28 90 4.16e-11 57.8
Msa0064450 MtrunA17_Chr8g0392951 46.667 135 71 1 12 146 24 157 1.16e-32 113
Msa0064450 MtrunA17_Chr8g0368681 41.216 148 85 1 1 146 1 148 3.79e-32 112
Msa0064450 MtrunA17_Chr8g0368681 38.356 73 42 1 4 76 82 151 6.90e-11 57.0
Msa0064450 MtrunA17_Chr8g0391691 47.328 131 69 0 12 142 36 166 5.99e-32 112
Msa0064450 MtrunA17_Chr8g0391691 51.515 66 31 1 5 69 101 166 1.01e-13 65.1
Msa0064450 MtrunA17_Chr3g0100511 43.448 145 67 1 1 145 41 170 1.84e-31 110
Msa0064450 MtrunA17_Chr5g0434951 42.222 135 77 1 12 146 4 137 2.46e-30 107
Msa0064450 MtrunA17_Chr4g0033601 42.553 141 79 1 12 150 5 145 9.38e-30 105
Msa0064450 MtrunA17_Chr3g0100561 42.069 145 69 1 1 145 41 170 6.90e-29 104
Msa0064450 MtrunA17_Chr6g0482731 45.255 137 71 3 12 146 26 160 7.14e-29 104
Msa0064450 MtrunA17_Chr6g0482731 38.667 75 46 0 13 87 100 174 9.06e-11 57.0
Msa0064450 MtrunA17_Chr1g0169581 40.876 137 79 1 12 146 4 140 1.64e-28 102
Msa0064450 MtrunA17_Chr3g0111371 44.444 135 71 2 12 146 5 135 2.16e-27 99.4
Msa0064450 MtrunA17_Chr5g0397101 37.838 148 86 3 1 146 360 503 2.67e-26 103
Msa0064450 MtrunA17_Chr7g0256701 41.844 141 77 3 11 146 72 212 4.83e-26 98.2
Msa0064450 MtrunA17_Chr4g0074811 37.584 149 89 3 1 148 385 530 7.05e-26 102
Msa0064450 MtrunA17_Chr5g0444171 38.255 149 88 3 1 148 386 531 1.80e-25 100
Msa0064450 MtrunA17_Chr4g0059951 39.333 150 86 4 1 148 367 513 3.32e-25 100
Msa0064450 MtrunA17_Chr8g0387671 37.162 148 87 3 1 146 360 503 2.40e-24 97.4
Msa0064450 MtrunA17_Chr7g0256171 45.255 137 73 1 12 146 5 141 3.50e-24 91.7
Msa0064450 MtrunA17_Chr8g0351681 41.497 147 77 4 12 150 49 194 4.42e-24 92.4
Msa0064450 MtrunA17_Chr7g0242561 36.486 148 93 1 1 148 350 496 4.80e-24 96.7
Msa0064450 MtrunA17_Chr1g0200601 40.541 148 81 3 1 146 324 466 6.28e-24 96.3
Msa0064450 MtrunA17_Chr3g0098951 37.013 154 90 3 1 148 377 529 6.62e-24 96.3
Msa0064450 MtrunA17_Chr4g0064231 40.127 157 76 3 12 150 64 220 8.27e-24 92.4
Msa0064450 MtrunA17_Chr1g0176751 35.616 146 91 2 1 146 418 560 1.16e-23 95.9
Msa0064450 MtrunA17_Chr8g0385341 36.986 146 89 2 1 146 324 466 3.29e-23 94.4
Msa0064450 MtrunA17_Chr3g0100471 56.338 71 31 0 5 75 45 115 3.43e-23 87.8
Msa0064450 MtrunA17_Chr1g0157131 35.135 148 90 3 1 146 368 511 4.94e-23 94.0
Msa0064450 MtrunA17_Chr7g0267751 37.671 146 88 2 1 146 429 571 5.63e-23 94.0
Msa0064450 MtrunA17_Chr7g0245911 38.356 146 81 3 12 148 47 192 6.96e-23 89.4
Msa0064450 MtrunA17_Chr3g0131181 36.301 146 90 2 1 146 323 465 7.68e-23 93.2
Msa0064450 MtrunA17_Chr1g0169621 34.756 164 80 3 12 148 4 167 1.65e-22 87.8
Msa0064450 MtrunA17_Chr7g0225921 33.333 141 92 2 8 147 2 141 9.34e-22 85.1
Msa0064450 MtrunA17_Chr0c02g0489761 35.135 148 90 3 1 146 372 515 1.40e-21 89.7
Msa0064450 MtrunA17_Chr5g0441691 34.459 148 91 3 1 146 362 505 3.15e-21 88.6
Msa0064450 MtrunA17_Chr3g0116141 35.433 127 81 1 20 146 13 138 4.82e-21 83.2
Msa0064450 MtrunA17_Chr3g0116151 35.433 127 81 1 20 146 14 139 4.94e-21 83.2
Msa0064450 MtrunA17_Chr5g0402331 35.762 151 89 3 2 148 38 184 1.01e-20 83.6
Msa0064450 MtrunA17_Chr7g0245371 37.333 150 82 2 11 148 23 172 1.65e-20 82.8
Msa0064450 MtrunA17_Chr5g0448721 34.247 146 93 2 1 146 390 532 2.35e-20 86.3
Msa0064450 MtrunA17_Chr4g0033371 37.086 151 91 3 1 150 366 513 2.39e-20 86.3
Msa0064450 MtrunA17_Chr1g0170281 34.247 146 93 2 1 146 412 554 3.33e-20 85.9
Msa0064450 MtrunA17_Chr4g0044961 36.296 135 84 1 12 146 57 189 3.96e-20 82.0
Msa0064450 MtrunA17_Chr4g0057641 35.294 136 87 1 11 146 5 139 4.53e-20 80.5
Msa0064450 MtrunA17_Chr5g0402361 37.143 140 81 2 12 148 48 183 4.54e-20 84.7
Msa0064450 MtrunA17_Chr5g0402361 35.762 151 89 3 2 148 210 356 1.22e-19 83.6
Msa0064450 MtrunA17_Chr5g0402361 30.061 163 86 3 12 146 120 282 5.82e-14 67.8
Msa0064450 MtrunA17_Chr4g0057651 34.559 136 88 1 11 146 5 139 1.04e-19 79.7
Msa0064450 MtrunA17_Chr6g0459231 32.143 140 94 1 8 147 4 142 1.92e-19 79.0
Msa0064450 MtrunA17_Chr8g0373691 35.915 142 88 3 6 146 48 187 2.64e-19 79.7
Msa0064450 MtrunA17_Chr8g0373691 42.254 71 38 1 79 146 44 114 6.77e-11 57.8
Msa0064450 MtrunA17_Chr2g0329371 38.129 139 82 2 12 146 64 202 4.25e-19 79.7
Msa0064450 MtrunA17_Chr5g0409441 31.852 135 92 0 8 142 18 152 5.20e-19 78.6
Msa0064450 MtrunA17_Chr3g0100461 61.111 54 21 0 93 146 53 106 5.46e-19 77.0
Msa0064450 MtrunA17_Chr3g0100461 50.000 56 28 0 20 75 53 108 1.14e-11 58.2
Msa0064450 MtrunA17_Chr4g0057661 33.824 136 89 1 11 146 5 139 3.11e-18 75.9
Msa0064450 MtrunA17_Chr4g0074791 32.653 147 84 5 1 146 390 522 8.66e-18 79.0
Msa0064450 MtrunA17_Chr7g0257751 30.822 146 100 1 1 146 352 496 1.29e-17 78.6
Msa0064450 MtrunA17_Chr3g0100501 51.613 62 30 0 83 144 70 131 1.67e-17 73.9
Msa0064450 MtrunA17_Chr5g0405421 29.870 154 96 5 1 148 395 542 2.88e-17 77.4
Msa0064450 MtrunA17_Chr1g0173541 28.767 146 103 1 1 146 346 490 2.14e-16 75.1
Msa0064450 MtrunA17_Chr1g0176421 33.094 139 90 2 1 139 455 590 1.91e-15 72.4
Msa0064450 MtrunA17_Chr3g0121191 33.088 136 81 1 12 147 93 218 7.08e-15 68.9
Msa0064450 MtrunA17_Chr3g0121191 41.176 68 40 0 6 73 150 217 8.22e-11 58.2
Msa0064450 MtrunA17_Chr5g0396261 34.513 113 70 3 36 145 1 112 2.03e-14 65.5
Msa0064450 MtrunA17_Chr3g0125311 32.394 142 78 5 21 147 22 160 1.67e-12 61.6
Msa0064450 MtrunA17_Chr7g0252401 25.532 141 99 1 7 147 30 164 3.94e-12 62.8
Msa0064450 MtrunA17_Chr4g0068501 27.273 143 94 3 11 146 15 154 1.29e-11 59.3
Msa0064450 MtrunA17_Chr2g0333301 26.797 153 98 5 3 150 22 165 1.70e-11 58.9
Msa0064450 MtrunA17_Chr1g0160151 31.429 140 76 4 20 147 30 161 2.90e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0064450 AT3G22930.1 84.247 146 23 0 5 150 28 173 7.45e-88 254
Msa0064450 AT4G14640.1 83.448 145 24 0 5 149 6 150 1.24e-86 250
Msa0064450 AT2G27030.3 79.054 148 31 0 1 148 1 148 1.11e-83 244
Msa0064450 AT2G27030.3 46.269 67 36 0 12 78 85 151 5.36e-12 60.8
Msa0064450 AT3G56800.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0064450 AT3G56800.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0064450 AT2G41110.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0064450 AT2G41110.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0064450 AT2G27030.1 79.054 148 31 0 1 148 1 148 2.52e-83 241
Msa0064450 AT2G27030.1 47.692 65 34 0 12 76 85 149 6.91e-12 60.1
Msa0064450 AT3G43810.1 78.378 148 32 0 1 148 1 148 3.70e-83 241
Msa0064450 AT3G43810.1 47.692 65 34 0 12 76 85 149 5.72e-12 60.1
Msa0064450 AT3G43810.2 78.378 148 32 0 1 148 1 148 9.33e-83 243
Msa0064450 AT5G21274.1 77.703 148 33 0 1 148 1 148 1.35e-82 239
Msa0064450 AT5G21274.1 46.154 65 35 0 12 76 85 149 1.69e-11 58.9
Msa0064450 AT1G66410.1 77.703 148 33 0 1 148 1 148 4.61e-82 238
Msa0064450 AT1G66410.1 47.692 65 34 0 12 76 85 149 2.15e-12 61.2
Msa0064450 AT5G37780.1 77.703 148 33 0 1 148 1 148 4.61e-82 238
Msa0064450 AT5G37780.1 47.692 65 34 0 12 76 85 149 2.15e-12 61.2
Msa0064450 AT2G41110.2 73.125 160 31 1 1 148 1 160 9.26e-80 233
Msa0064450 AT2G41110.2 47.692 65 34 0 12 76 97 161 9.19e-12 59.7
Msa0064450 AT5G37780.2 70.552 163 33 1 1 148 1 163 1.55e-77 228
Msa0064450 AT5G37780.2 47.692 65 34 0 12 76 100 164 4.28e-12 60.8
Msa0064450 AT5G37780.3 66.092 174 33 1 1 148 1 174 6.24e-76 224
Msa0064450 AT5G37780.3 47.692 65 34 0 12 76 111 175 4.91e-12 60.8
Msa0064450 AT1G66410.2 72.785 158 33 1 1 148 1 158 1.73e-73 217
Msa0064450 AT1G66410.2 47.692 65 34 0 12 76 95 159 4.35e-12 60.8
Msa0064450 AT4G14640.2 83.871 124 20 0 26 149 9 132 1.85e-73 216
Msa0064450 AT4G14640.2 45.161 62 34 0 12 73 68 129 2.32e-11 58.2
Msa0064450 AT5G37780.4 79.675 123 25 0 26 148 13 135 1.58e-69 206
Msa0064450 AT5G37780.4 47.692 65 34 0 12 76 72 136 3.05e-12 60.5
Msa0064450 AT3G43810.4 80.357 112 22 0 37 148 1 112 1.79e-63 190
Msa0064450 AT3G43810.4 47.692 65 34 0 12 76 49 113 1.73e-12 60.5
Msa0064450 AT3G43810.3 80.357 112 22 0 37 148 1 112 1.79e-63 190
Msa0064450 AT3G43810.3 47.692 65 34 0 12 76 49 113 1.73e-12 60.5
Msa0064450 AT1G66410.4 80.357 112 22 0 37 148 1 112 3.95e-63 189
Msa0064450 AT1G66410.4 47.692 65 34 0 12 76 49 113 6.49e-13 61.6
Msa0064450 AT1G66410.3 80.357 112 22 0 37 148 1 112 3.95e-63 189
Msa0064450 AT1G66410.3 47.692 65 34 0 12 76 49 113 6.49e-13 61.6
Msa0064450 AT4G14640.3 81.553 103 19 0 5 107 6 108 1.16e-58 178
Msa0064450 AT3G22930.2 79.808 104 21 0 5 108 28 131 2.56e-57 175
Msa0064450 AT2G41090.1 53.061 147 66 1 1 147 1 144 2.77e-48 154
Msa0064450 AT2G41100.7 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0064450 AT2G41100.7 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0064450 AT2G41100.7 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0064450 AT2G41100.6 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0064450 AT2G41100.6 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0064450 AT2G41100.6 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0064450 AT2G41100.3 50.920 163 63 2 1 146 55 217 3.99e-44 147
Msa0064450 AT2G41100.3 40.945 127 59 2 36 146 1 127 2.29e-25 98.2
Msa0064450 AT2G41100.3 52.688 93 41 1 5 97 149 238 2.87e-24 95.5
Msa0064450 AT3G51920.1 48.649 148 76 0 1 148 1 148 7.72e-44 142
Msa0064450 AT2G41100.4 50.920 163 63 2 1 146 90 252 8.87e-44 147
Msa0064450 AT2G41100.4 45.062 162 73 2 1 146 1 162 4.21e-41 140
Msa0064450 AT2G41100.4 52.688 93 41 1 5 97 184 273 5.04e-24 95.5
Msa0064450 AT2G41100.1 50.920 163 63 2 1 146 90 252 8.87e-44 147
Msa0064450 AT2G41100.1 45.062 162 73 2 1 146 1 162 4.21e-41 140
Msa0064450 AT2G41100.1 52.688 93 41 1 5 97 184 273 5.04e-24 95.5
Msa0064450 AT1G62820.1 42.361 144 81 1 5 148 6 147 6.42e-39 129
Msa0064450 AT1G12310.1 41.667 144 82 1 5 148 6 147 3.15e-38 127
Msa0064450 AT3G50360.1 47.407 135 71 0 12 146 27 161 1.24e-37 126
Msa0064450 AT3G50360.1 44.776 67 37 0 80 146 22 88 3.60e-12 61.2
Msa0064450 AT1G32250.1 41.892 148 80 2 5 146 9 156 1.95e-36 123
Msa0064450 AT1G66400.1 48.227 141 71 1 12 150 15 155 7.61e-36 121
Msa0064450 AT1G66400.1 41.176 68 40 0 6 73 84 151 2.82e-11 58.5
Msa0064450 AT1G18530.1 42.254 142 80 1 7 146 2 143 6.56e-34 117
Msa0064450 AT1G18530.1 43.836 73 38 1 4 76 77 146 1.05e-12 62.4
Msa0064450 AT5G37770.1 46.853 143 72 1 12 150 17 159 6.81e-34 117
Msa0064450 AT5G37770.2 46.853 143 72 1 12 150 17 159 6.81e-34 117
Msa0064450 AT4G37010.1 44.444 135 75 0 12 146 27 161 2.36e-33 115
Msa0064450 AT4G37010.2 44.444 135 75 0 12 146 31 165 2.39e-33 115
Msa0064450 AT1G24620.1 45.775 142 76 1 9 150 34 174 1.03e-32 114
Msa0064450 AT3G03000.1 43.448 145 81 1 5 148 13 157 1.12e-32 114
Msa0064450 AT3G25600.1 39.189 148 88 1 1 146 1 148 1.68e-30 108
Msa0064450 AT3G25600.1 41.096 73 40 1 4 76 82 151 3.43e-12 60.8
Msa0064450 AT1G18210.2 42.963 135 73 1 12 146 23 153 2.30e-29 105
Msa0064450 AT1G18210.1 42.963 135 73 1 12 146 23 153 2.30e-29 105
Msa0064450 AT2G41100.2 48.800 125 47 2 39 146 3 127 7.27e-29 105
Msa0064450 AT2G41100.2 52.688 93 41 1 5 97 59 148 3.65e-25 95.9
Msa0064450 AT1G73630.1 41.304 138 77 1 11 148 19 152 1.73e-28 103
Msa0064450 AT1G05990.1 43.165 139 76 2 11 146 4 142 1.28e-27 100
Msa0064450 AT2G43290.1 41.549 142 76 2 12 146 65 206 1.65e-27 102
Msa0064450 AT1G76040.1 38.356 146 88 2 1 146 167 310 4.55e-27 103
Msa0064450 AT1G76040.4 38.356 146 88 2 1 146 167 310 4.55e-27 103
Msa0064450 AT2G41100.5 52.577 97 43 1 1 97 1 94 4.78e-27 99.0
Msa0064450 AT2G41100.5 47.297 74 38 1 73 146 1 73 3.23e-15 68.6
Msa0064450 AT3G10190.1 40.541 148 85 3 1 146 59 205 7.74e-27 100
Msa0064450 AT2G15680.1 36.806 144 89 1 5 148 43 184 1.81e-26 98.6
Msa0064450 AT1G76040.2 38.356 146 88 2 1 146 405 548 3.05e-26 103
Msa0064450 AT4G04720.2 39.597 149 86 3 1 148 373 518 5.37e-26 102
Msa0064450 AT4G04720.1 39.597 149 86 3 1 148 373 518 5.37e-26 102
Msa0064450 AT3G59440.1 40.714 140 80 2 11 148 50 188 2.96e-25 95.9
Msa0064450 AT3G59440.1 45.946 74 38 1 2 73 113 186 2.51e-11 59.3
Msa0064450 AT4G21940.1 38.255 149 88 3 1 148 395 540 4.53e-25 100
Msa0064450 AT4G21940.2 38.255 149 88 3 1 148 395 540 5.12e-25 100
Msa0064450 AT1G35670.1 39.726 146 85 2 1 146 320 462 5.69e-25 99.8
Msa0064450 AT4G23650.1 37.162 148 87 3 1 146 372 515 5.96e-25 99.8
Msa0064450 AT4G03290.1 40.426 141 79 2 11 146 4 144 9.36e-25 93.6
Msa0064450 AT4G03290.1 49.231 65 31 1 13 75 82 146 8.53e-13 62.4
Msa0064450 AT5G23580.1 39.726 146 85 2 1 146 316 458 1.09e-24 99.0
Msa0064450 AT5G17470.1 40.580 138 80 1 11 146 1 138 1.10e-24 93.2
Msa0064450 AT3G50770.1 38.571 140 81 2 12 146 64 203 1.56e-24 94.4
Msa0064450 AT3G50770.1 43.077 65 37 0 82 146 61 125 1.96e-11 59.7
Msa0064450 AT4G09570.1 40.541 148 81 3 1 146 319 461 1.78e-24 98.2
Msa0064450 AT5G19360.1 38.776 147 86 3 1 146 362 505 5.79e-24 97.1
Msa0064450 AT4G12860.1 40.426 141 82 1 12 150 5 145 1.47e-23 90.1
Msa0064450 AT4G04740.4 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT4G04740.6 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT4G04740.5 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT4G04740.3 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT4G04740.1 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT4G04740.7 38.462 143 84 3 5 146 366 505 1.64e-23 95.5
Msa0064450 AT5G12180.1 38.095 147 87 3 1 146 367 510 2.20e-23 95.1
Msa0064450 AT4G04700.1 40.268 149 85 3 1 148 325 470 4.05e-23 94.4
Msa0064450 AT4G04695.1 38.255 149 88 3 1 148 325 470 4.50e-23 94.4
Msa0064450 AT3G07490.1 41.304 138 79 1 11 146 4 141 5.32e-23 89.0
Msa0064450 AT1G61950.1 34.667 150 92 3 1 148 393 538 1.58e-22 92.8
Msa0064450 AT2G36180.1 43.796 137 74 2 13 146 1 137 1.68e-22 87.4
Msa0064450 AT3G20410.2 33.784 148 96 2 1 148 385 530 2.37e-22 92.4
Msa0064450 AT3G20410.1 33.784 148 96 2 1 148 385 530 2.37e-22 92.4
Msa0064450 AT2G41410.1 38.194 144 86 3 8 148 66 209 4.05e-22 88.2
Msa0064450 AT4G38230.1 35.616 146 91 2 1 146 174 316 4.86e-22 90.1
Msa0064450 AT4G38230.2 35.616 146 91 2 1 146 348 490 1.06e-21 90.5
Msa0064450 AT4G38230.4 35.616 146 91 2 1 146 318 460 1.28e-21 90.1
Msa0064450 AT4G38230.3 35.616 146 91 2 1 146 318 460 1.28e-21 90.1
Msa0064450 AT2G17290.1 35.616 146 91 2 1 146 379 521 1.81e-21 89.7
Msa0064450 AT2G17290.2 35.616 146 91 2 1 146 379 521 1.81e-21 89.7
Msa0064450 AT1G50700.1 32.432 148 98 2 1 148 367 512 1.95e-21 89.7
Msa0064450 AT3G51850.1 35.135 148 95 1 1 148 348 494 2.56e-21 89.4
Msa0064450 AT3G03400.1 35.878 131 82 1 11 139 4 134 5.15e-21 83.2
Msa0064450 AT2G38910.1 34.000 150 96 2 1 150 428 574 1.67e-20 87.0
Msa0064450 AT3G10660.2 32.877 146 95 2 1 146 480 622 1.74e-20 87.0
Msa0064450 AT3G10660.1 32.877 146 95 2 1 146 480 622 1.74e-20 87.0
Msa0064450 AT5G04870.1 33.562 146 94 2 1 146 444 586 2.32e-20 86.7
Msa0064450 AT1G74740.1 35.374 147 92 3 1 146 353 497 7.87e-20 85.1
Msa0064450 AT5G12480.2 35.374 147 93 2 1 146 259 404 8.63e-20 84.7
Msa0064450 AT4G35310.2 32.877 146 95 2 1 146 391 533 1.05e-19 84.7
Msa0064450 AT4G35310.1 32.877 146 95 2 1 146 391 533 1.05e-19 84.7
Msa0064450 AT5G12480.1 35.374 147 93 2 1 146 353 498 1.30e-19 84.7
Msa0064450 AT3G03410.1 36.496 137 76 2 14 150 4 129 3.11e-19 78.6
Msa0064450 AT4G04710.3 35.374 147 91 3 1 146 312 455 5.09e-19 82.8
Msa0064450 AT4G04710.2 35.374 147 91 3 1 146 326 469 5.47e-19 82.8
Msa0064450 AT4G20780.1 34.591 159 84 2 11 149 28 186 5.98e-19 79.3
Msa0064450 AT4G04710.1 35.374 147 91 3 1 146 339 482 6.02e-19 82.8
Msa0064450 AT3G57530.1 34.228 149 94 3 1 148 357 502 6.50e-19 82.4
Msa0064450 AT1G18890.1 36.486 148 89 4 1 146 357 501 3.73e-18 80.5
Msa0064450 AT5G19450.2 34.014 147 95 2 1 146 351 496 7.58e-18 79.3
Msa0064450 AT5G19450.1 34.014 147 95 2 1 146 351 496 7.58e-18 79.3
Msa0064450 AT4G04710.4 35.570 149 90 4 1 146 339 484 8.31e-18 79.3
Msa0064450 AT5G42380.1 34.058 138 90 1 10 146 47 184 8.45e-18 76.3
Msa0064450 AT1G50700.2 28.161 174 97 3 1 148 367 538 5.82e-17 77.0
Msa0064450 AT5G44460.1 34.868 152 85 3 11 149 27 177 7.77e-17 73.6
Msa0064450 AT4G04740.2 35.659 129 79 3 5 132 366 491 1.63e-16 75.9
Msa0064450 AT2G31500.1 32.450 151 98 3 1 148 360 509 1.94e-16 75.5
Msa0064450 AT2G41860.2 31.081 148 101 1 1 148 348 494 5.03e-16 74.3
Msa0064450 AT2G41860.1 31.081 148 101 1 1 148 348 494 5.44e-16 74.3
Msa0064450 AT5G66210.1 27.922 154 99 5 1 148 358 505 6.08e-16 73.9
Msa0064450 AT5G66210.2 27.922 154 99 5 1 148 358 505 6.08e-16 73.9
Msa0064450 AT3G51850.2 37.736 106 65 1 1 106 348 452 1.07e-15 73.2
Msa0064450 AT2G17890.1 26.623 154 101 5 1 148 404 551 4.24e-15 71.6
Msa0064450 AT4G21940.3 38.384 99 60 1 1 99 395 492 6.02e-15 71.2
Msa0064450 AT1G76040.3 35.644 101 64 1 1 101 405 504 5.17e-14 68.6
Msa0064450 AT1G76640.1 28.873 142 99 1 7 146 17 158 9.15e-14 65.1
Msa0064450 AT1G76650.1 32.143 140 94 1 7 146 38 176 1.03e-13 65.5
Msa0064450 AT1G76650.3 32.143 140 94 1 7 146 38 176 1.03e-13 65.5
Msa0064450 AT1G21550.1 32.877 146 90 3 12 149 10 155 3.44e-13 63.5
Msa0064450 AT1G50700.3 33.333 99 65 1 1 99 367 464 2.79e-12 63.5
Msa0064450 AT5G66210.3 26.718 131 90 3 1 125 358 488 1.16e-11 61.6
Msa0064450 AT4G36070.1 25.974 154 102 5 1 148 367 514 1.91e-11 61.2
Msa0064450 AT4G36070.2 25.974 154 102 5 1 148 367 514 1.98e-11 61.2
Msa0064450 AT5G49480.1 31.429 140 90 3 13 146 19 158 2.34e-11 58.9

Find 44 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATTCAAATTTGTTAATT+TGG 0.116892 1_2:+25579271 Msa0064450:three_prime_UTR
TGTTGAGTTCTTGAACTTAA+TGG 0.156792 1_2:+25577484 Msa0064450:CDS
CAACCTCGTTTATCATTTCT+TGG 0.231199 1_2:-25577433 None:intergenic
AGACACGTTATGATCAATTT+AGG 0.232191 1_2:+25579098 Msa0064450:CDS
CTTCTTTGATCTCAACAATT+TGG 0.239416 1_2:-25577102 None:intergenic
TGAAAGAGGATGAGATTAAT+AGG 0.303679 1_2:-25579296 None:intergenic
GATGATTAAAGAAGCAGATT+TGG 0.325770 1_2:+25579151 Msa0064450:CDS
CTTGGAGCTCTTCCTCTGTT+GGG 0.341743 1_2:-25577415 None:intergenic
TCTTGGAGCTCTTCCTCTGT+TGG 0.366378 1_2:-25577416 None:intergenic
TGCAACTGTAATTAGGTCAT+TGG 0.376466 1_2:+25577385 Msa0064450:CDS
AGATCTCAAAGAGGCTTTCA+AGG 0.399505 1_2:+25577636 Msa0064450:CDS
AAGAACTTGCAACTGTAATT+AGG 0.411307 1_2:+25577378 Msa0064450:CDS
TGGGTGGGATGTCACTCTAA+TGG 0.423891 1_2:-25579399 None:intergenic
GAAAGCAGAGAGAGGGAGAG+AGG 0.426093 1_2:-25576998 None:intergenic
GAGGTTGATGCAGATGGAAA+TGG 0.427391 1_2:+25577449 Msa0064450:CDS
CATTTATTATTTCTTGAAAG+AGG 0.434761 1_2:-25579310 None:intergenic
CAAGAACTCAACAAATTCAA+TGG 0.441259 1_2:-25577474 None:intergenic
GGGTGGGATGTCACTCTAAT+GGG 0.445878 1_2:-25579398 None:intergenic
CCACACTTAAATCTACATAT+AGG 0.446117 1_2:+25576926 Msa0064450:intron
ATCTTTGTCAAACAAGCAAA+AGG 0.476240 1_2:-25577125 None:intergenic
AAAGCAGAGAGAGGGAGAGA+GGG 0.490456 1_2:-25576997 None:intergenic
GGATAGTTTATTTCATCCAA+TGG 0.496741 1_2:-25579222 None:intergenic
TTTCAAACTTCAAAGAGTGT+TGG 0.497299 1_2:+25577017 Msa0064450:five_prime_UTR
GAGTATAGCTCAATCTTAGC+TGG 0.502101 1_2:-25576949 None:intergenic
GTTAAGATGATGATGACCAT+TGG 0.525117 1_2:+25579206 Msa0064450:CDS
GAAGCAGATTTGGACGGTGA+TGG 0.535179 1_2:+25579161 Msa0064450:CDS
GAAGTTTGAAAGCAGAGAGA+GGG 0.539443 1_2:-25577005 None:intergenic
GGGATGTCACTCTAATGGGT+TGG 0.547301 1_2:-25579394 None:intergenic
ATAAACGAGGTTGATGCAGA+TGG 0.548616 1_2:+25577443 Msa0064450:CDS
AAATGATATATGTTAAATTG+TGG 0.554936 1_2:-25579243 None:intergenic
TTTAATAGGTTGCATTACTG+TGG 0.584530 1_2:+25577355 Msa0064450:intron
TGAAGTTTGAAAGCAGAGAG+AGG 0.584781 1_2:-25577006 None:intergenic
TGGTTATATTTCCGCTAGTG+AGG 0.592900 1_2:+25577678 Msa0064450:CDS
GTTGAACAAATCAAATGATG+TGG 0.593439 1_2:-25579419 None:intergenic
AAAATTAACTGATGAAGAGG+TGG 0.600647 1_2:+25579124 Msa0064450:CDS
ATTAAAGAAGCAGATTTGGA+CGG 0.618310 1_2:+25579155 Msa0064450:CDS
TTGTTTGACAAAGATGGAGA+TGG 0.622259 1_2:+25577133 Msa0064450:CDS
AACAAATCAAATGATGTGGG+TGG 0.623765 1_2:-25579415 None:intergenic
TGCAGATGAAGATCTCAAAG+AGG 0.636781 1_2:+25577627 Msa0064450:CDS
ACAAATCAAATGATGTGGGT+GGG 0.653799 1_2:-25579414 None:intergenic
TTGAACAAATCAAATGATGT+GGG 0.659925 1_2:-25579418 None:intergenic
ATATTTATATACCTCACTAG+CGG 0.685027 1_2:-25577689 None:intergenic
ATTGGATCAAAACCCAACAG+AGG 0.719116 1_2:+25577403 Msa0064450:CDS
GCTCCAAGAAATGATAAACG+AGG 0.724641 1_2:+25577430 Msa0064450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTTTACTTAATATATAA+GGG - chr1_2:25576867-25576886 None:intergenic 10.0%
!!! TTACTTTTACTTAATATATA+AGG - chr1_2:25576868-25576887 None:intergenic 10.0%
!! TATATAATTGAAATGAAATA+TGG - chr1_2:25577194-25577213 None:intergenic 10.0%
!! TTCAAAAATATTATAGTATT+AGG - chr1_2:25577293-25577312 None:intergenic 10.0%
!! ATACTATAAAATAAAATAAG+GGG - chr1_2:25578093-25578112 None:intergenic 10.0%
!!! TATAATAAAACAATTTTTTG+AGG + chr1_2:25578559-25578578 Msa0064450:intron 10.0%
!!! ATAATAAAACAATTTTTTGA+GGG + chr1_2:25578560-25578579 Msa0064450:intron 10.0%
!!! AATTTTTTTCATAGTTTTAA+TGG - chr1_2:25578653-25578672 None:intergenic 10.0%
!! CACATTAATATTATAGTATA+AGG - chr1_2:25577320-25577339 None:intergenic 15.0%
!!! AATAATTACTTTCATTTTCT+TGG - chr1_2:25577510-25577529 None:intergenic 15.0%
!!! AACAAATTTTTTCTTGTATA+TGG + chr1_2:25577978-25577997 Msa0064450:intron 15.0%
!! TACTATAAAATAAAATAAGG+GGG - chr1_2:25578092-25578111 None:intergenic 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr1_2:25578257-25578276 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1_2:25578281-25578300 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1_2:25578280-25578299 Msa0064450:intron 15.0%
!! AAATGATATATGTTAAATTG+TGG - chr1_2:25579246-25579265 None:intergenic 15.0%
!!! GTTATTCAAATTTGTTAATT+TGG + chr1_2:25579271-25579290 Msa0064450:three_prime_UTR 15.0%
!!! GTTTTATTATTTATTGTTTG+TGG + chr1_2:25579332-25579351 Msa0064450:three_prime_UTR 15.0%
!! TGAAAAACAAGCATATAAAA+TGG + chr1_2:25577060-25577079 Msa0064450:exon 20.0%
!! CTTCTTGATTAATCTTTAAT+AGG + chr1_2:25577341-25577360 Msa0064450:intron 20.0%
!! CATTATTGTAAGAAATGAAA+GGG - chr1_2:25577537-25577556 None:intergenic 20.0%
!! ACATTATTGTAAGAAATGAA+AGG - chr1_2:25577538-25577557 None:intergenic 20.0%
!!! GTTTTTGATAAAGATCAAAA+TGG + chr1_2:25577658-25577677 Msa0064450:CDS 20.0%
!!! TATATAAATATTTTCCTCTC+CGG + chr1_2:25577701-25577720 Msa0064450:intron 20.0%
!! AATAACTGTATAAGTGTAAT+GGG - chr1_2:25577950-25577969 None:intergenic 20.0%
!! TAATAACTGTATAAGTGTAA+TGG - chr1_2:25577951-25577970 None:intergenic 20.0%
!! ACACTTATACAGTTATTAAA+TGG + chr1_2:25577953-25577972 Msa0064450:intron 20.0%
!!! TTTTCTTGTATATGGAAAAA+AGG + chr1_2:25577986-25578005 Msa0064450:intron 20.0%
!! ATACATTATGATAGATTTCA+TGG + chr1_2:25578030-25578049 Msa0064450:intron 20.0%
!!! TTTTTTTGTTGAATGAATGA+GGG - chr1_2:25578058-25578077 None:intergenic 20.0%
!!! TTTTTTTTGTTGAATGAATG+AGG - chr1_2:25578059-25578078 None:intergenic 20.0%
!! TTCAACAAAAAAAAACTTCA+TGG + chr1_2:25578065-25578084 Msa0064450:intron 20.0%
!! ACTATAAAATAAAATAAGGG+GGG - chr1_2:25578091-25578110 None:intergenic 20.0%
!!! CATTTTGAAACAAATTTTTC+TGG - chr1_2:25578154-25578173 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1_2:25578194-25578213 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_2:25578271-25578290 Msa0064450:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr1_2:25578314-25578333 None:intergenic 20.0%
!! AAAAATTTATTGAAGCATAG+AGG + chr1_2:25578666-25578685 Msa0064450:intron 20.0%
!!! CATTTATTATTTCTTGAAAG+AGG - chr1_2:25579313-25579332 None:intergenic 20.0%
! CTATATGTAGATTTAAGTGT+GGG - chr1_2:25576928-25576947 None:intergenic 25.0%
! TGAAGCATGATGATAAATAT+TGG - chr1_2:25577243-25577262 None:intergenic 25.0%
! ATATTTATATACCTCACTAG+CGG - chr1_2:25577692-25577711 None:intergenic 25.0%
!! TAACTTCTTTGTTATAGGAT+TGG + chr1_2:25578392-25578411 Msa0064450:intron 25.0%
! AAAAAATCTCTTGCAACAAA+AGG - chr1_2:25578719-25578738 None:intergenic 25.0%
! GAAAAACATTCAACTTCTAT+AGG - chr1_2:25578744-25578763 None:intergenic 25.0%
!! CTATTATTATTCATCGATTG+CGG - chr1_2:25578925-25578944 None:intergenic 25.0%
! TGAAAAATTAACTGATGAAG+AGG + chr1_2:25579121-25579140 Msa0064450:CDS 25.0%
! TTGAACAAATCAAATGATGT+GGG - chr1_2:25579421-25579440 None:intergenic 25.0%
CCTATATGTAGATTTAAGTG+TGG - chr1_2:25576929-25576948 None:intergenic 30.0%
CCACACTTAAATCTACATAT+AGG + chr1_2:25576926-25576945 Msa0064450:intron 30.0%
! TTTCAAACTTCAAAGAGTGT+TGG + chr1_2:25577017-25577036 Msa0064450:five_prime_UTR 30.0%
CTTCTTTGATCTCAACAATT+TGG - chr1_2:25577105-25577124 None:intergenic 30.0%
ATCTTTGTCAAACAAGCAAA+AGG - chr1_2:25577128-25577147 None:intergenic 30.0%
! TTTTGCTTGTTTGACAAAGA+TGG + chr1_2:25577127-25577146 Msa0064450:CDS 30.0%
ATATTGGCAACAAACAAAGA+AGG - chr1_2:25577227-25577246 None:intergenic 30.0%
TTTAATAGGTTGCATTACTG+TGG + chr1_2:25577355-25577374 Msa0064450:intron 30.0%
AAGAACTTGCAACTGTAATT+AGG + chr1_2:25577378-25577397 Msa0064450:CDS 30.0%
CAAGAACTCAACAAATTCAA+TGG - chr1_2:25577477-25577496 None:intergenic 30.0%
TGTTGAGTTCTTGAACTTAA+TGG + chr1_2:25577484-25577503 Msa0064450:CDS 30.0%
TCATCTAAACATGCATTAAC+CGG - chr1_2:25577723-25577742 None:intergenic 30.0%
CAACGAGTTTCACATAATTA+CGG - chr1_2:25577812-25577831 None:intergenic 30.0%
! AAGAAAAAAGTGTGATGGAA+AGG - chr1_2:25577916-25577935 None:intergenic 30.0%
! CACTTAAGAAAAAAGTGTGA+TGG - chr1_2:25577921-25577940 None:intergenic 30.0%
!!! CATCACACTTTTTTCTTAAG+TGG + chr1_2:25577919-25577938 Msa0064450:intron 30.0%
!! AAGCGACACTCATTTTAAAA+CGG - chr1_2:25578128-25578147 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1_2:25578362-25578381 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_2:25578363-25578382 Msa0064450:intron 30.0%
! AGGAGTAACTTCTTTGTTAT+AGG + chr1_2:25578387-25578406 Msa0064450:intron 30.0%
ATGCACATTAATTTCACACA+TGG + chr1_2:25578831-25578850 Msa0064450:intron 30.0%
AGACACGTTATGATCAATTT+AGG + chr1_2:25579098-25579117 Msa0064450:CDS 30.0%
AAAATTAACTGATGAAGAGG+TGG + chr1_2:25579124-25579143 Msa0064450:CDS 30.0%
GATGATTAAAGAAGCAGATT+TGG + chr1_2:25579151-25579170 Msa0064450:CDS 30.0%
ATTAAAGAAGCAGATTTGGA+CGG + chr1_2:25579155-25579174 Msa0064450:CDS 30.0%
GGATAGTTTATTTCATCCAA+TGG - chr1_2:25579225-25579244 None:intergenic 30.0%
TGAAAGAGGATGAGATTAAT+AGG - chr1_2:25579299-25579318 None:intergenic 30.0%
GTTGAACAAATCAAATGATG+TGG - chr1_2:25579422-25579441 None:intergenic 30.0%
TTGTTTGACAAAGATGGAGA+TGG + chr1_2:25577133-25577152 Msa0064450:CDS 35.0%
TGCAACTGTAATTAGGTCAT+TGG + chr1_2:25577385-25577404 Msa0064450:CDS 35.0%
CAACCTCGTTTATCATTTCT+TGG - chr1_2:25577436-25577455 None:intergenic 35.0%
!!! CTATTTTTTCCCCCTCATTT+AGG + chr1_2:25577597-25577616 Msa0064450:intron 35.0%
TGCATCAGTTTCCTAAATGA+GGG - chr1_2:25577611-25577630 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+GGG - chr1_2:25578124-25578143 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+CGG + chr1_2:25578165-25578184 Msa0064450:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr1_2:25578228-25578247 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr1_2:25578232-25578251 None:intergenic 35.0%
TCTCTTGCAACAAAAGGAAT+AGG - chr1_2:25578713-25578732 None:intergenic 35.0%
ACACTTCTTCAATCAACTAG+AGG + chr1_2:25578881-25578900 Msa0064450:intron 35.0%
! ATTATTCATCGATTGCGGAA+AGG - chr1_2:25578920-25578939 None:intergenic 35.0%
! GTTAAGATGATGATGACCAT+TGG + chr1_2:25579206-25579225 Msa0064450:CDS 35.0%
ACAAATCAAATGATGTGGGT+GGG - chr1_2:25579417-25579436 None:intergenic 35.0%
AACAAATCAAATGATGTGGG+TGG - chr1_2:25579418-25579437 None:intergenic 35.0%
GAGTATAGCTCAATCTTAGC+TGG - chr1_2:25576952-25576971 None:intergenic 40.0%
GAAGTTTGAAAGCAGAGAGA+GGG - chr1_2:25577008-25577027 None:intergenic 40.0%
TGAAGTTTGAAAGCAGAGAG+AGG - chr1_2:25577009-25577028 None:intergenic 40.0%
ATTGGATCAAAACCCAACAG+AGG + chr1_2:25577403-25577422 Msa0064450:CDS 40.0%
GCTCCAAGAAATGATAAACG+AGG + chr1_2:25577430-25577449 Msa0064450:CDS 40.0%
!! ATAAACGAGGTTGATGCAGA+TGG + chr1_2:25577443-25577462 Msa0064450:CDS 40.0%
CATCAGTTTCCTAAATGAGG+GGG - chr1_2:25577609-25577628 None:intergenic 40.0%
GCATCAGTTTCCTAAATGAG+GGG - chr1_2:25577610-25577629 None:intergenic 40.0%
CTGCATCAGTTTCCTAAATG+AGG - chr1_2:25577612-25577631 None:intergenic 40.0%
TGCAGATGAAGATCTCAAAG+AGG + chr1_2:25577627-25577646 Msa0064450:CDS 40.0%
AGATCTCAAAGAGGCTTTCA+AGG + chr1_2:25577636-25577655 Msa0064450:CDS 40.0%
TGGTTATATTTCCGCTAGTG+AGG + chr1_2:25577678-25577697 Msa0064450:CDS 40.0%
TAAACATGCATTAACCGGAG+AGG - chr1_2:25577718-25577737 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG - chr1_2:25578125-25578144 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr1_2:25578229-25578248 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+AGG + chr1_2:25578367-25578386 Msa0064450:intron 40.0%
!! GAGGTTGATGCAGATGGAAA+TGG + chr1_2:25577449-25577468 Msa0064450:CDS 45.0%
TCGTTGTCATGCAATCGTGT+AGG + chr1_2:25577826-25577845 Msa0064450:intron 45.0%
!! TATACTATAAAATAAAATAA+GGG - chr1_2:25578094-25578113 None:intergenic 5.0%
!! TTATACTATAAAATAAAATA+AGG - chr1_2:25578095-25578114 None:intergenic 5.0%
AAAGCAGAGAGAGGGAGAGA+GGG - chr1_2:25577000-25577019 None:intergenic 50.0%
CTTGGAGCTCTTCCTCTGTT+GGG - chr1_2:25577418-25577437 None:intergenic 50.0%
TCTTGGAGCTCTTCCTCTGT+TGG - chr1_2:25577419-25577438 None:intergenic 50.0%
GAAGCAGATTTGGACGGTGA+TGG + chr1_2:25579161-25579180 Msa0064450:CDS 50.0%
! GGGATGTCACTCTAATGGGT+TGG - chr1_2:25579397-25579416 None:intergenic 50.0%
GGGTGGGATGTCACTCTAAT+GGG - chr1_2:25579401-25579420 None:intergenic 50.0%
TGGGTGGGATGTCACTCTAA+TGG - chr1_2:25579402-25579421 None:intergenic 50.0%
GAAAGCAGAGAGAGGGAGAG+AGG - chr1_2:25577001-25577020 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 25576859 25579458 25576859 ID=Msa0064450;Name=Msa0064450
chr1_2 mRNA 25576859 25579458 25576859 ID=Msa0064450-mRNA-1;Parent=Msa0064450;Name=Msa0064450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=175|1|1|1|0.75|0.6|5|226|150
chr1_2 exon 25576859 25576888 25576859 ID=Msa0064450-mRNA-1:exon:9115;Parent=Msa0064450-mRNA-1
chr1_2 exon 25576934 25577154 25576934 ID=Msa0064450-mRNA-1:exon:9116;Parent=Msa0064450-mRNA-1
chr1_2 exon 25577363 25577520 25577363 ID=Msa0064450-mRNA-1:exon:9117;Parent=Msa0064450-mRNA-1
chr1_2 exon 25577619 25577699 25577619 ID=Msa0064450-mRNA-1:exon:9118;Parent=Msa0064450-mRNA-1
chr1_2 exon 25579095 25579458 25579095 ID=Msa0064450-mRNA-1:exon:9119;Parent=Msa0064450-mRNA-1
chr1_2 five_prime_UTR 25576859 25576888 25576859 ID=Msa0064450-mRNA-1:five_prime_utr;Parent=Msa0064450-mRNA-1
chr1_2 five_prime_UTR 25576934 25577078 25576934 ID=Msa0064450-mRNA-1:five_prime_utr;Parent=Msa0064450-mRNA-1
chr1_2 CDS 25577079 25577154 25577079 ID=Msa0064450-mRNA-1:cds;Parent=Msa0064450-mRNA-1
chr1_2 CDS 25577363 25577520 25577363 ID=Msa0064450-mRNA-1:cds;Parent=Msa0064450-mRNA-1
chr1_2 CDS 25577619 25577699 25577619 ID=Msa0064450-mRNA-1:cds;Parent=Msa0064450-mRNA-1
chr1_2 CDS 25579095 25579232 25579095 ID=Msa0064450-mRNA-1:cds;Parent=Msa0064450-mRNA-1
chr1_2 three_prime_UTR 25579233 25579458 25579233 ID=Msa0064450-mRNA-1:three_prime_utr;Parent=Msa0064450-mRNA-1
Gene Sequence

>Msa0064450

ATGGCAGAAATTTTGAATGAAGACCAAATTGTTGAGATCAAAGAAGCCTTTTGCTTGTTTGACAAAGATGGAGATGGTTGCATTACTGTGGAAGAACTTGCAACTGTAATTAGGTCATTGGATCAAAACCCAACAGAGGAAGAGCTCCAAGAAATGATAAACGAGGTTGATGCAGATGGAAATGGAACCATTGAATTTGTTGAGTTCTTGAACTTAATGGCCAAGAAAATGAAAGAAACTGATGCAGATGAAGATCTCAAAGAGGCTTTCAAGGTTTTTGATAAAGATCAAAATGGTTATATTTCCGCTAGTGAGTTGAGACACGTTATGATCAATTTAGGTGAAAAATTAACTGATGAAGAGGTGGATCAGATGATTAAAGAAGCAGATTTGGACGGTGATGGACAAGTGAACTTTGAAGAGTTTGTTAAGATGATGATGACCATTGGATGA
Protein sequence

>Msa0064450

MAEILNEDQIVEIKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEEELQEMINEVDADGNGTIEFVEFLNLMAKKMKETDADEDLKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNFEEFVKMMMTIG*