AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0242720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0242720 MtrunA17_Chr2g0295081 99.363 157 1 0 1 157 1 157 1.88e-112 315
Msa0242720 MtrunA17_Chr2g0295021 60.510 157 62 0 1 157 1 157 2.87e-63 191
Msa0242720 MtrunA17_Chr2g0295001 60.510 157 62 0 1 157 1 157 2.87e-63 191
Msa0242720 MtrunA17_Chr2g0295064 58.599 157 65 0 1 157 68 224 4.13e-61 188
Msa0242720 MtrunA17_Chr2g0295041 57.962 157 66 0 1 157 1 157 1.22e-59 182
Msa0242720 MtrunA17_Chr2g0295051 56.688 157 68 0 1 157 1 157 3.12e-58 178
Msa0242720 MtrunA17_Chr4g0067951 55.414 157 70 0 1 157 1 157 5.26e-56 172
Msa0242720 MtrunA17_Chr6g0462311 54.140 157 72 0 1 157 1 157 1.38e-54 169
Msa0242720 MtrunA17_Chr2g0295141 48.408 157 81 0 1 157 1 157 6.60e-50 157
Msa0242720 MtrunA17_Chr2g0295091 47.771 157 82 0 1 157 1 157 2.42e-48 153
Msa0242720 MtrunA17_Chr2g0295104 47.771 157 82 0 1 157 1 157 5.20e-48 152
Msa0242720 MtrunA17_Chr2g0295124 49.315 146 74 0 12 157 12 157 2.62e-47 150
Msa0242720 MtrunA17_Chr6g0462291 53.957 139 64 0 1 139 1 139 7.92e-46 147
Msa0242720 MtrunA17_Chr2g0295211 36.184 152 94 2 5 155 7 156 2.22e-30 107
Msa0242720 MtrunA17_Chr4g0067841 32.692 156 104 1 1 155 1 156 1.39e-28 103
Msa0242720 MtrunA17_Chr4g0067921 39.752 161 90 5 1 157 1 158 2.24e-25 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTATATAATGTATTATT+TGG 0.170616 2_2:-19075081 None:intergenic
GTGTACAACTTTAGCATTAT+TGG 0.213546 2_2:+19075941 Msa0242720:CDS
TGTACAACTTTAGCATTATT+GGG 0.243931 2_2:+19075942 Msa0242720:CDS
TTTGTTGTTGTGGTTATTAT+TGG 0.252319 2_2:-19074970 None:intergenic
TTATTATTGGGAATAGTATT+TGG 0.281380 2_2:-19074957 None:intergenic
AATTAATAACAACCAGATTA+AGG 0.281625 2_2:+19076221 Msa0242720:three_prime_UTR
ATAAGATAAGATGAAATATT+TGG 0.289744 2_2:+19076389 Msa0242720:three_prime_UTR
TGGATCACTTCCACAAGCTT+TGG 0.317240 2_2:-19075305 None:intergenic
TTAATAAGAACTTGGCTATA+TGG 0.336303 2_2:+19076194 Msa0242720:three_prime_UTR
ATTAAACACATTCAGTAATC+AGG 0.345127 2_2:-19076166 None:intergenic
CATTTGGTCCTTCAACCAAT+TGG 0.345692 2_2:-19076009 None:intergenic
TTGTTGTTGTGGTTATTATT+GGG 0.349218 2_2:-19074969 None:intergenic
GGATCACTTCCACAAGCTTT+GGG 0.357297 2_2:-19075304 None:intergenic
CTTACAACCCAACCTTAATC+TGG 0.358489 2_2:-19076233 None:intergenic
TAACAATTGGAGGAATTTGC+AGG 0.381600 2_2:-19074923 None:intergenic
TATATAATGTATTATTTGGT+TGG 0.388756 2_2:-19075077 None:intergenic
ATGGCTTTGAAGAGCCTAAC+AGG 0.389381 2_2:-19075257 None:intergenic
CTGCTGCTGTTCCTCCTGTT+AGG 0.389483 2_2:+19075243 Msa0242720:CDS
CTTCAGTGAACTCAATACTT+TGG 0.401346 2_2:-19075325 None:intergenic
CATTGAGAAATTCTTCATCA+TGG 0.402402 2_2:+19075193 Msa0242720:exon
ATCAACATGTACATTCCTAA+TGG 0.402440 2_2:-19076038 None:intergenic
ACTTAAATTATAATCACCTT+TGG 0.409104 2_2:-19076068 None:intergenic
TTCCTAATGGACCCTCCATT+TGG 0.409557 2_2:-19076025 None:intergenic
GCTTGTTGAAGGGTACCTTT+TGG 0.410083 2_2:+19076138 Msa0242720:CDS
ATTAAGGTTGGGTTGTAAGA+TGG 0.410527 2_2:+19076237 Msa0242720:three_prime_UTR
CACTCTGTGTAGCACATACT+TGG 0.421047 2_2:-19075894 None:intergenic
TAATTTCACCTAACCCCATA+TGG 0.422046 2_2:+19075021 Msa0242720:five_prime_UTR
CATTCTCATAACTCATACTT+AGG 0.431391 2_2:-19076263 None:intergenic
CTTCCACAAGCTTTGGGAAG+AGG 0.431558 2_2:-19075298 None:intergenic
AGTGAGGAGGAGTTGAAAGC+TGG 0.432811 2_2:+19076088 Msa0242720:CDS
TTGATTATGAGAAGATGTTA+AGG 0.436047 2_2:-19075150 None:intergenic
GGTGATAAGAAAATAACAAT+TGG 0.436095 2_2:-19074936 None:intergenic
GGACTTGTAAAGCTTGTTGA+AGG 0.441945 2_2:+19076127 Msa0242720:CDS
AATAACAACCAGATTAAGGT+TGG 0.443346 2_2:+19076225 Msa0242720:three_prime_UTR
GACCAAATGGAGGGTCCATT+AGG 0.448487 2_2:+19076023 Msa0242720:CDS
GCTGGTAAAGCAAAGGTTGA+AGG 0.449190 2_2:+19076106 Msa0242720:CDS
TACTAGTACTACCACCATAT+GGG 0.457407 2_2:-19075035 None:intergenic
AAGAAGCTCACCACAGTTGA+AGG 0.458485 2_2:+19075371 Msa0242720:CDS
TTAAGGTTGGGTTGTAAGAT+GGG 0.462460 2_2:+19076238 Msa0242720:three_prime_UTR
ACTGAAGGAACTGGTGGTGC+TGG 0.463110 2_2:+19075341 Msa0242720:CDS
AGTAATCAGGATTTGCCAAA+AGG 0.469472 2_2:-19076153 None:intergenic
GTACTAGTACTACCACCATA+TGG 0.472406 2_2:-19075036 None:intergenic
CTAACAGGAGGAACAGCAGC+AGG 0.474433 2_2:-19075242 None:intergenic
ATTGAGAAATTCTTCATCAT+GGG 0.480342 2_2:+19075194 Msa0242720:exon
AATTAGAGTTAATAAGAACT+TGG 0.482146 2_2:+19076186 Msa0242720:three_prime_UTR
AGTCTCATTCAAGAGCCAAT+TGG 0.492931 2_2:+19075994 Msa0242720:CDS
TTCAAGAGCCAATTGGTTGA+AGG 0.493896 2_2:+19076001 Msa0242720:CDS
CCCTTCCAACCTTTAGTCCA+TGG 0.494019 2_2:-19076428 None:intergenic
ATAACAACCAGATTAAGGTT+GGG 0.499101 2_2:+19076226 Msa0242720:three_prime_UTR
ATTGAGTTCACTGAAGGAAC+TGG 0.500969 2_2:+19075332 Msa0242720:CDS
AATTAAGCTCAGTATGTGTT+TGG 0.504243 2_2:-19075003 None:intergenic
TAACCTCTTCCCAAAGCTTG+TGG 0.518650 2_2:+19075295 Msa0242720:CDS
CACTGGATTGGCTGACACAT+TGG 0.522999 2_2:+19075967 Msa0242720:CDS
TACTACCACCATATGGGGTT+AGG 0.523500 2_2:-19075029 None:intergenic
GATAAGAAAATAACAATTGG+AGG 0.535044 2_2:-19074933 None:intergenic
TGATTATAATTTAAGTGAGG+AGG 0.547716 2_2:+19076075 Msa0242720:CDS
CTGAGTGAGCCATGGACTAA+AGG 0.557309 2_2:+19076419 Msa0242720:three_prime_UTR
GTGAGCCATGGACTAAAGGT+TGG 0.560802 2_2:+19076423 Msa0242720:three_prime_UTR
CAATTGGTTGAAGGACCAAA+TGG 0.561796 2_2:+19076010 Msa0242720:CDS
AACAGGAGGAACAGCAGCAG+GGG 0.564864 2_2:-19075240 None:intergenic
GTACAACTTTAGCATTATTG+GGG 0.564914 2_2:+19075943 Msa0242720:CDS
CATCATGGGTGTACAAACTC+AGG 0.570571 2_2:+19075208 Msa0242720:exon
CAAAGTATTGAGTTCACTGA+AGG 0.574960 2_2:+19075326 Msa0242720:CDS
GCCATGGACTAAAGGTTGGA+AGG 0.576891 2_2:+19076427 Msa0242720:three_prime_UTR
GTATTTGACTGAGTGAGCCA+TGG 0.580257 2_2:+19076411 Msa0242720:three_prime_UTR
CCATGGACTAAAGGTTGGAA+GGG 0.581214 2_2:+19076428 Msa0242720:three_prime_UTR
TAATTACTGACCTTCAACTG+TGG 0.582513 2_2:-19075381 None:intergenic
TAAGGTTGGGTTGTAAGATG+GGG 0.599400 2_2:+19076239 Msa0242720:three_prime_UTR
TAACAGGAGGAACAGCAGCA+GGG 0.612336 2_2:-19075241 None:intergenic
TAAGCTCAGTATGTGTTTGG+TGG 0.615034 2_2:-19075000 None:intergenic
TTGGTTGAAGGACCAAATGG+AGG 0.621672 2_2:+19076013 Msa0242720:CDS
GACTTGTAAAGCTTGTTGAA+GGG 0.631158 2_2:+19076128 Msa0242720:CDS
TGGTTGAAGGACCAAATGGA+GGG 0.640692 2_2:+19076014 Msa0242720:CDS
GTTGAAAGCTGGTAAAGCAA+AGG 0.651458 2_2:+19076099 Msa0242720:CDS
TTTCACCTAACCCCATATGG+TGG 0.653400 2_2:+19075024 Msa0242720:five_prime_UTR
AAGGTTGGGTTGTAAGATGG+GGG 0.654059 2_2:+19076240 Msa0242720:three_prime_UTR
CAAGTATGTGCTACACAGAG+TGG 0.654201 2_2:+19075895 Msa0242720:CDS
AGGTGATTATAATTTAAGTG+AGG 0.654716 2_2:+19076072 Msa0242720:CDS
ACTAGTACTACCACCATATG+GGG 0.664820 2_2:-19075034 None:intergenic
TACAACTTTAGCATTATTGG+GGG 0.677045 2_2:+19075944 Msa0242720:CDS
GTTATGAAACTCTAATGACA+TGG 0.696174 2_2:-19075276 None:intergenic
GAGTTCACTGAAGGAACTGG+TGG 0.720921 2_2:+19075335 Msa0242720:CDS
GCTTTGAAGAGCCTAACAGG+AGG 0.746272 2_2:-19075254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAATAATGATCA+TGG - chr2_2:19075714-19075733 None:intergenic 10.0%
!! AGTTAGTTAAATTAAATTAA+TGG + chr2_2:19075831-19075850 Msa0242720:intron 10.0%
!! ATCTTATATTAAAAAAAAAC+TGG - chr2_2:19076376-19076395 None:intergenic 10.0%
!! AAAAAATAAAATAATGATCA+TGG - chr2_2:19075714-19075733 None:intergenic 10.0%
!! AGTTAGTTAAATTAAATTAA+TGG + chr2_2:19075831-19075850 Msa0242720:intron 10.0%
!! ATCTTATATTAAAAAAAAAC+TGG - chr2_2:19076376-19076395 None:intergenic 10.0%
!! TATATAATGTATTATTTGGT+TGG - chr2_2:19075080-19075099 None:intergenic 15.0%
!!! ATTTTCTCTTATTTTAATTG+AGG - chr2_2:19075490-19075509 None:intergenic 15.0%
!!! TTTTTATAGAAAAATGTTAG+TGG + chr2_2:19075731-19075750 Msa0242720:intron 15.0%
!! TATATTAAAAAAAAACTGGA+AGG - chr2_2:19076372-19076391 None:intergenic 15.0%
!! ATAAGATAAGATGAAATATT+TGG + chr2_2:19076389-19076408 Msa0242720:three_prime_UTR 15.0%
!! TATATAATGTATTATTTGGT+TGG - chr2_2:19075080-19075099 None:intergenic 15.0%
!!! ATTTTCTCTTATTTTAATTG+AGG - chr2_2:19075490-19075509 None:intergenic 15.0%
!!! TTTTTATAGAAAAATGTTAG+TGG + chr2_2:19075731-19075750 Msa0242720:intron 15.0%
!! TATATTAAAAAAAAACTGGA+AGG - chr2_2:19076372-19076391 None:intergenic 15.0%
!! ATAAGATAAGATGAAATATT+TGG + chr2_2:19076389-19076408 Msa0242720:three_prime_UTR 15.0%
!! TTATTATTGGGAATAGTATT+TGG - chr2_2:19074960-19074979 None:intergenic 20.0%
!!! TATTTTAATTCCATGACTTT+AGG + chr2_2:19075411-19075430 Msa0242720:intron 20.0%
!! TGGTTAATTCGTTAAATTAA+AGG + chr2_2:19075751-19075770 Msa0242720:intron 20.0%
!! TTCGTTAAATTAAAGGAATA+TGG + chr2_2:19075758-19075777 Msa0242720:intron 20.0%
!! ACTTAAATTATAATCACCTT+TGG - chr2_2:19076071-19076090 None:intergenic 20.0%
!! AATTAGAGTTAATAAGAACT+TGG + chr2_2:19076186-19076205 Msa0242720:three_prime_UTR 20.0%
!! AATTAATAACAACCAGATTA+AGG + chr2_2:19076221-19076240 Msa0242720:three_prime_UTR 20.0%
!! TTATTATTGGGAATAGTATT+TGG - chr2_2:19074960-19074979 None:intergenic 20.0%
!!! TATTTTAATTCCATGACTTT+AGG + chr2_2:19075411-19075430 Msa0242720:intron 20.0%
!! TGGTTAATTCGTTAAATTAA+AGG + chr2_2:19075751-19075770 Msa0242720:intron 20.0%
!! TTCGTTAAATTAAAGGAATA+TGG + chr2_2:19075758-19075777 Msa0242720:intron 20.0%
!! ACTTAAATTATAATCACCTT+TGG - chr2_2:19076071-19076090 None:intergenic 20.0%
!! AATTAGAGTTAATAAGAACT+TGG + chr2_2:19076186-19076205 Msa0242720:three_prime_UTR 20.0%
!! AATTAATAACAACCAGATTA+AGG + chr2_2:19076221-19076240 Msa0242720:three_prime_UTR 20.0%
! GATAAGAAAATAACAATTGG+AGG - chr2_2:19074936-19074955 None:intergenic 25.0%
! GGTGATAAGAAAATAACAAT+TGG - chr2_2:19074939-19074958 None:intergenic 25.0%
!! TTGTTGTTGTGGTTATTATT+GGG - chr2_2:19074972-19074991 None:intergenic 25.0%
!!! TTTGTTGTTGTGGTTATTAT+TGG - chr2_2:19074973-19074992 None:intergenic 25.0%
! TTGATTATGAGAAGATGTTA+AGG - chr2_2:19075153-19075172 None:intergenic 25.0%
! ATTGAGAAATTCTTCATCAT+GGG + chr2_2:19075194-19075213 Msa0242720:exon 25.0%
! ATATAAGTAGGTGCAAATTA+TGG - chr2_2:19075585-19075604 None:intergenic 25.0%
! AAGTTTACAACGATATAAGT+AGG - chr2_2:19075597-19075616 None:intergenic 25.0%
! TGTACAACTTTAGCATTATT+GGG + chr2_2:19075942-19075961 Msa0242720:CDS 25.0%
!!! CATGTTGATTATTTTACCAA+AGG + chr2_2:19076052-19076071 Msa0242720:CDS 25.0%
! AGGTGATTATAATTTAAGTG+AGG + chr2_2:19076072-19076091 Msa0242720:CDS 25.0%
! TGATTATAATTTAAGTGAGG+AGG + chr2_2:19076075-19076094 Msa0242720:CDS 25.0%
! ATTAAACACATTCAGTAATC+AGG - chr2_2:19076169-19076188 None:intergenic 25.0%
! TTAATAAGAACTTGGCTATA+TGG + chr2_2:19076194-19076213 Msa0242720:three_prime_UTR 25.0%
! GATAAGAAAATAACAATTGG+AGG - chr2_2:19074936-19074955 None:intergenic 25.0%
! GGTGATAAGAAAATAACAAT+TGG - chr2_2:19074939-19074958 None:intergenic 25.0%
!! TTGTTGTTGTGGTTATTATT+GGG - chr2_2:19074972-19074991 None:intergenic 25.0%
!!! TTTGTTGTTGTGGTTATTAT+TGG - chr2_2:19074973-19074992 None:intergenic 25.0%
! TTGATTATGAGAAGATGTTA+AGG - chr2_2:19075153-19075172 None:intergenic 25.0%
! ATTGAGAAATTCTTCATCAT+GGG + chr2_2:19075194-19075213 Msa0242720:exon 25.0%
! ATATAAGTAGGTGCAAATTA+TGG - chr2_2:19075585-19075604 None:intergenic 25.0%
! AAGTTTACAACGATATAAGT+AGG - chr2_2:19075597-19075616 None:intergenic 25.0%
! TGTACAACTTTAGCATTATT+GGG + chr2_2:19075942-19075961 Msa0242720:CDS 25.0%
!!! CATGTTGATTATTTTACCAA+AGG + chr2_2:19076052-19076071 Msa0242720:CDS 25.0%
! AGGTGATTATAATTTAAGTG+AGG + chr2_2:19076072-19076091 Msa0242720:CDS 25.0%
! TGATTATAATTTAAGTGAGG+AGG + chr2_2:19076075-19076094 Msa0242720:CDS 25.0%
! ATTAAACACATTCAGTAATC+AGG - chr2_2:19076169-19076188 None:intergenic 25.0%
! TTAATAAGAACTTGGCTATA+TGG + chr2_2:19076194-19076213 Msa0242720:three_prime_UTR 25.0%
AATTAAGCTCAGTATGTGTT+TGG - chr2_2:19075006-19075025 None:intergenic 30.0%
CATTGAGAAATTCTTCATCA+TGG + chr2_2:19075193-19075212 Msa0242720:exon 30.0%
GTTATGAAACTCTAATGACA+TGG - chr2_2:19075279-19075298 None:intergenic 30.0%
! GTCTTACTTGTGATGATTTT+TGG - chr2_2:19075657-19075676 None:intergenic 30.0%
TGAGTGAATTTGATGAATAC+AGG + chr2_2:19075863-19075882 Msa0242720:intron 30.0%
GTGTACAACTTTAGCATTAT+TGG + chr2_2:19075941-19075960 Msa0242720:CDS 30.0%
GTACAACTTTAGCATTATTG+GGG + chr2_2:19075943-19075962 Msa0242720:CDS 30.0%
TACAACTTTAGCATTATTGG+GGG + chr2_2:19075944-19075963 Msa0242720:CDS 30.0%
ATCAACATGTACATTCCTAA+TGG - chr2_2:19076041-19076060 None:intergenic 30.0%
AATAACAACCAGATTAAGGT+TGG + chr2_2:19076225-19076244 Msa0242720:three_prime_UTR 30.0%
ATAACAACCAGATTAAGGTT+GGG + chr2_2:19076226-19076245 Msa0242720:three_prime_UTR 30.0%
CATTCTCATAACTCATACTT+AGG - chr2_2:19076266-19076285 None:intergenic 30.0%
AATTAAGCTCAGTATGTGTT+TGG - chr2_2:19075006-19075025 None:intergenic 30.0%
CATTGAGAAATTCTTCATCA+TGG + chr2_2:19075193-19075212 Msa0242720:exon 30.0%
GTTATGAAACTCTAATGACA+TGG - chr2_2:19075279-19075298 None:intergenic 30.0%
! GTCTTACTTGTGATGATTTT+TGG - chr2_2:19075657-19075676 None:intergenic 30.0%
TGAGTGAATTTGATGAATAC+AGG + chr2_2:19075863-19075882 Msa0242720:intron 30.0%
GTGTACAACTTTAGCATTAT+TGG + chr2_2:19075941-19075960 Msa0242720:CDS 30.0%
GTACAACTTTAGCATTATTG+GGG + chr2_2:19075943-19075962 Msa0242720:CDS 30.0%
TACAACTTTAGCATTATTGG+GGG + chr2_2:19075944-19075963 Msa0242720:CDS 30.0%
ATCAACATGTACATTCCTAA+TGG - chr2_2:19076041-19076060 None:intergenic 30.0%
AATAACAACCAGATTAAGGT+TGG + chr2_2:19076225-19076244 Msa0242720:three_prime_UTR 30.0%
ATAACAACCAGATTAAGGTT+GGG + chr2_2:19076226-19076245 Msa0242720:three_prime_UTR 30.0%
CATTCTCATAACTCATACTT+AGG - chr2_2:19076266-19076285 None:intergenic 30.0%
!!! TGGTGTCTTTTTTGTTGTTG+TGG - chr2_2:19074983-19075002 None:intergenic 35.0%
TAATTTCACCTAACCCCATA+TGG + chr2_2:19075021-19075040 Msa0242720:five_prime_UTR 35.0%
TACTAGTACTACCACCATAT+GGG - chr2_2:19075038-19075057 None:intergenic 35.0%
CTTCAGTGAACTCAATACTT+TGG - chr2_2:19075328-19075347 None:intergenic 35.0%
!! CAAAGTATTGAGTTCACTGA+AGG + chr2_2:19075326-19075345 Msa0242720:CDS 35.0%
TAATTACTGACCTTCAACTG+TGG - chr2_2:19075384-19075403 None:intergenic 35.0%
AGACTCAAATCCTAAAGTCA+TGG - chr2_2:19075424-19075443 None:intergenic 35.0%
! TCATTTTACAGTTGTCTCAG+AGG + chr2_2:19075537-19075556 Msa0242720:intron 35.0%
GTGAATTTGATGAATACAGG+TGG + chr2_2:19075866-19075885 Msa0242720:intron 35.0%
!! GACTTGTAAAGCTTGTTGAA+GGG + chr2_2:19076128-19076147 Msa0242720:CDS 35.0%
AGTAATCAGGATTTGCCAAA+AGG - chr2_2:19076156-19076175 None:intergenic 35.0%
! ATTAAGGTTGGGTTGTAAGA+TGG + chr2_2:19076237-19076256 Msa0242720:three_prime_UTR 35.0%
! TTAAGGTTGGGTTGTAAGAT+GGG + chr2_2:19076238-19076257 Msa0242720:three_prime_UTR 35.0%
!!! TGGTGTCTTTTTTGTTGTTG+TGG - chr2_2:19074983-19075002 None:intergenic 35.0%
TAATTTCACCTAACCCCATA+TGG + chr2_2:19075021-19075040 Msa0242720:five_prime_UTR 35.0%
TACTAGTACTACCACCATAT+GGG - chr2_2:19075038-19075057 None:intergenic 35.0%
CTTCAGTGAACTCAATACTT+TGG - chr2_2:19075328-19075347 None:intergenic 35.0%
!! CAAAGTATTGAGTTCACTGA+AGG + chr2_2:19075326-19075345 Msa0242720:CDS 35.0%
TAATTACTGACCTTCAACTG+TGG - chr2_2:19075384-19075403 None:intergenic 35.0%
AGACTCAAATCCTAAAGTCA+TGG - chr2_2:19075424-19075443 None:intergenic 35.0%
! TCATTTTACAGTTGTCTCAG+AGG + chr2_2:19075537-19075556 Msa0242720:intron 35.0%
GTGAATTTGATGAATACAGG+TGG + chr2_2:19075866-19075885 Msa0242720:intron 35.0%
!! GACTTGTAAAGCTTGTTGAA+GGG + chr2_2:19076128-19076147 Msa0242720:CDS 35.0%
AGTAATCAGGATTTGCCAAA+AGG - chr2_2:19076156-19076175 None:intergenic 35.0%
! ATTAAGGTTGGGTTGTAAGA+TGG + chr2_2:19076237-19076256 Msa0242720:three_prime_UTR 35.0%
! TTAAGGTTGGGTTGTAAGAT+GGG + chr2_2:19076238-19076257 Msa0242720:three_prime_UTR 35.0%
TAAGCTCAGTATGTGTTTGG+TGG - chr2_2:19075003-19075022 None:intergenic 40.0%
ACTAGTACTACCACCATATG+GGG - chr2_2:19075037-19075056 None:intergenic 40.0%
GTACTAGTACTACCACCATA+TGG - chr2_2:19075039-19075058 None:intergenic 40.0%
ATTGAGTTCACTGAAGGAAC+TGG + chr2_2:19075332-19075351 Msa0242720:CDS 40.0%
CTTTGTTAGAGTGACAAGTG+AGG + chr2_2:19075442-19075461 Msa0242720:intron 40.0%
AGTCTCATTCAAGAGCCAAT+TGG + chr2_2:19075994-19076013 Msa0242720:CDS 40.0%
TTCAAGAGCCAATTGGTTGA+AGG + chr2_2:19076001-19076020 Msa0242720:CDS 40.0%
CATTTGGTCCTTCAACCAAT+TGG - chr2_2:19076012-19076031 None:intergenic 40.0%
CAATTGGTTGAAGGACCAAA+TGG + chr2_2:19076010-19076029 Msa0242720:CDS 40.0%
GTTGAAAGCTGGTAAAGCAA+AGG + chr2_2:19076099-19076118 Msa0242720:CDS 40.0%
!! GGACTTGTAAAGCTTGTTGA+AGG + chr2_2:19076127-19076146 Msa0242720:CDS 40.0%
CTTACAACCCAACCTTAATC+TGG - chr2_2:19076236-19076255 None:intergenic 40.0%
! TAAGGTTGGGTTGTAAGATG+GGG + chr2_2:19076239-19076258 Msa0242720:three_prime_UTR 40.0%
TAAGCTCAGTATGTGTTTGG+TGG - chr2_2:19075003-19075022 None:intergenic 40.0%
ACTAGTACTACCACCATATG+GGG - chr2_2:19075037-19075056 None:intergenic 40.0%
GTACTAGTACTACCACCATA+TGG - chr2_2:19075039-19075058 None:intergenic 40.0%
ATTGAGTTCACTGAAGGAAC+TGG + chr2_2:19075332-19075351 Msa0242720:CDS 40.0%
CTTTGTTAGAGTGACAAGTG+AGG + chr2_2:19075442-19075461 Msa0242720:intron 40.0%
AGTCTCATTCAAGAGCCAAT+TGG + chr2_2:19075994-19076013 Msa0242720:CDS 40.0%
TTCAAGAGCCAATTGGTTGA+AGG + chr2_2:19076001-19076020 Msa0242720:CDS 40.0%
CATTTGGTCCTTCAACCAAT+TGG - chr2_2:19076012-19076031 None:intergenic 40.0%
CAATTGGTTGAAGGACCAAA+TGG + chr2_2:19076010-19076029 Msa0242720:CDS 40.0%
GTTGAAAGCTGGTAAAGCAA+AGG + chr2_2:19076099-19076118 Msa0242720:CDS 40.0%
!! GGACTTGTAAAGCTTGTTGA+AGG + chr2_2:19076127-19076146 Msa0242720:CDS 40.0%
CTTACAACCCAACCTTAATC+TGG - chr2_2:19076236-19076255 None:intergenic 40.0%
! TAAGGTTGGGTTGTAAGATG+GGG + chr2_2:19076239-19076258 Msa0242720:three_prime_UTR 40.0%
TTTCACCTAACCCCATATGG+TGG + chr2_2:19075024-19075043 Msa0242720:five_prime_UTR 45.0%
TACTACCACCATATGGGGTT+AGG - chr2_2:19075032-19075051 None:intergenic 45.0%
CATCATGGGTGTACAAACTC+AGG + chr2_2:19075208-19075227 Msa0242720:exon 45.0%
!! ATGGCTTTGAAGAGCCTAAC+AGG - chr2_2:19075260-19075279 None:intergenic 45.0%
TAACCTCTTCCCAAAGCTTG+TGG + chr2_2:19075295-19075314 Msa0242720:CDS 45.0%
GGATCACTTCCACAAGCTTT+GGG - chr2_2:19075307-19075326 None:intergenic 45.0%
TGGATCACTTCCACAAGCTT+TGG - chr2_2:19075308-19075327 None:intergenic 45.0%
AAGAAGCTCACCACAGTTGA+AGG + chr2_2:19075371-19075390 Msa0242720:CDS 45.0%
CACTCTGTGTAGCACATACT+TGG - chr2_2:19075897-19075916 None:intergenic 45.0%
CAAGTATGTGCTACACAGAG+TGG + chr2_2:19075895-19075914 Msa0242720:CDS 45.0%
! TTTAGCATTATTGGGGGCAC+TGG + chr2_2:19075950-19075969 Msa0242720:CDS 45.0%
TTGGTTGAAGGACCAAATGG+AGG + chr2_2:19076013-19076032 Msa0242720:CDS 45.0%
TGGTTGAAGGACCAAATGGA+GGG + chr2_2:19076014-19076033 Msa0242720:CDS 45.0%
! TTCCTAATGGACCCTCCATT+TGG - chr2_2:19076028-19076047 None:intergenic 45.0%
GCTGGTAAAGCAAAGGTTGA+AGG + chr2_2:19076106-19076125 Msa0242720:CDS 45.0%
!!! GCTTGTTGAAGGGTACCTTT+TGG + chr2_2:19076138-19076157 Msa0242720:CDS 45.0%
! AAGGTTGGGTTGTAAGATGG+GGG + chr2_2:19076240-19076259 Msa0242720:three_prime_UTR 45.0%
GTATTTGACTGAGTGAGCCA+TGG + chr2_2:19076411-19076430 Msa0242720:three_prime_UTR 45.0%
! CCATGGACTAAAGGTTGGAA+GGG + chr2_2:19076428-19076447 Msa0242720:three_prime_UTR 45.0%
TTTCACCTAACCCCATATGG+TGG + chr2_2:19075024-19075043 Msa0242720:five_prime_UTR 45.0%
TACTACCACCATATGGGGTT+AGG - chr2_2:19075032-19075051 None:intergenic 45.0%
CATCATGGGTGTACAAACTC+AGG + chr2_2:19075208-19075227 Msa0242720:exon 45.0%
!! ATGGCTTTGAAGAGCCTAAC+AGG - chr2_2:19075260-19075279 None:intergenic 45.0%
TAACCTCTTCCCAAAGCTTG+TGG + chr2_2:19075295-19075314 Msa0242720:CDS 45.0%
GGATCACTTCCACAAGCTTT+GGG - chr2_2:19075307-19075326 None:intergenic 45.0%
TGGATCACTTCCACAAGCTT+TGG - chr2_2:19075308-19075327 None:intergenic 45.0%
AAGAAGCTCACCACAGTTGA+AGG + chr2_2:19075371-19075390 Msa0242720:CDS 45.0%
CACTCTGTGTAGCACATACT+TGG - chr2_2:19075897-19075916 None:intergenic 45.0%
CAAGTATGTGCTACACAGAG+TGG + chr2_2:19075895-19075914 Msa0242720:CDS 45.0%
! TTTAGCATTATTGGGGGCAC+TGG + chr2_2:19075950-19075969 Msa0242720:CDS 45.0%
TTGGTTGAAGGACCAAATGG+AGG + chr2_2:19076013-19076032 Msa0242720:CDS 45.0%
TGGTTGAAGGACCAAATGGA+GGG + chr2_2:19076014-19076033 Msa0242720:CDS 45.0%
! TTCCTAATGGACCCTCCATT+TGG - chr2_2:19076028-19076047 None:intergenic 45.0%
GCTGGTAAAGCAAAGGTTGA+AGG + chr2_2:19076106-19076125 Msa0242720:CDS 45.0%
!!! GCTTGTTGAAGGGTACCTTT+TGG + chr2_2:19076138-19076157 Msa0242720:CDS 45.0%
! AAGGTTGGGTTGTAAGATGG+GGG + chr2_2:19076240-19076259 Msa0242720:three_prime_UTR 45.0%
GTATTTGACTGAGTGAGCCA+TGG + chr2_2:19076411-19076430 Msa0242720:three_prime_UTR 45.0%
! CCATGGACTAAAGGTTGGAA+GGG + chr2_2:19076428-19076447 Msa0242720:three_prime_UTR 45.0%
!! TTATTATATAATGTATTATT+TGG - chr2_2:19075084-19075103 None:intergenic 5.0%
!! TTATTATATAATGTATTATT+TGG - chr2_2:19075084-19075103 None:intergenic 5.0%
TAACAGGAGGAACAGCAGCA+GGG - chr2_2:19075244-19075263 None:intergenic 50.0%
!! GCTTTGAAGAGCCTAACAGG+AGG - chr2_2:19075257-19075276 None:intergenic 50.0%
!! CTTCCACAAGCTTTGGGAAG+AGG - chr2_2:19075301-19075320 None:intergenic 50.0%
GAGTTCACTGAAGGAACTGG+TGG + chr2_2:19075335-19075354 Msa0242720:CDS 50.0%
!! CATTATTGGGGGCACTGGAT+TGG + chr2_2:19075955-19075974 Msa0242720:CDS 50.0%
!! CACTGGATTGGCTGACACAT+TGG + chr2_2:19075967-19075986 Msa0242720:CDS 50.0%
GACCAAATGGAGGGTCCATT+AGG + chr2_2:19076023-19076042 Msa0242720:CDS 50.0%
AGTGAGGAGGAGTTGAAAGC+TGG + chr2_2:19076088-19076107 Msa0242720:CDS 50.0%
! CTGAGTGAGCCATGGACTAA+AGG + chr2_2:19076419-19076438 Msa0242720:three_prime_UTR 50.0%
! GTGAGCCATGGACTAAAGGT+TGG + chr2_2:19076423-19076442 Msa0242720:three_prime_UTR 50.0%
! GCCATGGACTAAAGGTTGGA+AGG + chr2_2:19076427-19076446 Msa0242720:three_prime_UTR 50.0%
CCCTTCCAACCTTTAGTCCA+TGG - chr2_2:19076431-19076450 None:intergenic 50.0%
TAACAGGAGGAACAGCAGCA+GGG - chr2_2:19075244-19075263 None:intergenic 50.0%
!! GCTTTGAAGAGCCTAACAGG+AGG - chr2_2:19075257-19075276 None:intergenic 50.0%
!! CTTCCACAAGCTTTGGGAAG+AGG - chr2_2:19075301-19075320 None:intergenic 50.0%
GAGTTCACTGAAGGAACTGG+TGG + chr2_2:19075335-19075354 Msa0242720:CDS 50.0%
!! CATTATTGGGGGCACTGGAT+TGG + chr2_2:19075955-19075974 Msa0242720:CDS 50.0%
!! CACTGGATTGGCTGACACAT+TGG + chr2_2:19075967-19075986 Msa0242720:CDS 50.0%
GACCAAATGGAGGGTCCATT+AGG + chr2_2:19076023-19076042 Msa0242720:CDS 50.0%
AGTGAGGAGGAGTTGAAAGC+TGG + chr2_2:19076088-19076107 Msa0242720:CDS 50.0%
! CTGAGTGAGCCATGGACTAA+AGG + chr2_2:19076419-19076438 Msa0242720:three_prime_UTR 50.0%
! GTGAGCCATGGACTAAAGGT+TGG + chr2_2:19076423-19076442 Msa0242720:three_prime_UTR 50.0%
! GCCATGGACTAAAGGTTGGA+AGG + chr2_2:19076427-19076446 Msa0242720:three_prime_UTR 50.0%
CCCTTCCAACCTTTAGTCCA+TGG - chr2_2:19076431-19076450 None:intergenic 50.0%
AACAGGAGGAACAGCAGCAG+GGG - chr2_2:19075243-19075262 None:intergenic 55.0%
CTAACAGGAGGAACAGCAGC+AGG - chr2_2:19075245-19075264 None:intergenic 55.0%
CTGCTGCTGTTCCTCCTGTT+AGG + chr2_2:19075243-19075262 Msa0242720:CDS 55.0%
! ACTGAAGGAACTGGTGGTGC+TGG + chr2_2:19075341-19075360 Msa0242720:CDS 55.0%
AACAGGAGGAACAGCAGCAG+GGG - chr2_2:19075243-19075262 None:intergenic 55.0%
CTAACAGGAGGAACAGCAGC+AGG - chr2_2:19075245-19075264 None:intergenic 55.0%
CTGCTGCTGTTCCTCCTGTT+AGG + chr2_2:19075243-19075262 Msa0242720:CDS 55.0%
! ACTGAAGGAACTGGTGGTGC+TGG + chr2_2:19075341-19075360 Msa0242720:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 19074926 19076528 19074926 ID=Msa0242720;Name=Msa0242720
chr2_2 mRNA 19074926 19076528 19074926 ID=Msa0242720-mRNA-1;Parent=Msa0242720;Name=Msa0242720-mRNA-1;_AED=0.37;_eAED=0.37;_QI=286|1|1|1|1|1|2|351|157
chr2_2 exon 19074926 19075392 19074926 ID=Msa0242720-mRNA-1:exon:7777;Parent=Msa0242720-mRNA-1
chr2_2 exon 19075885 19076528 19075885 ID=Msa0242720-mRNA-1:exon:7778;Parent=Msa0242720-mRNA-1
chr2_2 five_prime_UTR 19074926 19075211 19074926 ID=Msa0242720-mRNA-1:five_prime_utr;Parent=Msa0242720-mRNA-1
chr2_2 CDS 19075212 19075392 19075212 ID=Msa0242720-mRNA-1:cds;Parent=Msa0242720-mRNA-1
chr2_2 CDS 19075885 19076177 19075885 ID=Msa0242720-mRNA-1:cds;Parent=Msa0242720-mRNA-1
chr2_2 three_prime_UTR 19076178 19076528 19076178 ID=Msa0242720-mRNA-1:three_prime_utr;Parent=Msa0242720-mRNA-1
Gene Sequence

>Msa0242720

ATGGGTGTACAAACTCAGGAGTATGCTACCCCTGCTGCTGTTCCTCCTGTTAGGCTCTTCAAAGCCATGTCATTAGAGTTTCATAACCTCTTCCCAAAGCTTGTGGAAGTGATCCAAAGTATTGAGTTCACTGAAGGAACTGGTGGTGCTGGAACAATCAAGAAGCTCACCACAGTTGAAGGTGGAGAGACCAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGACTAAATTTGTGTACAACTTTAGCATTATTGGGGGCACTGGATTGGCTGACACATTGGAGAAAGTCTCATTCAAGAGCCAATTGGTTGAAGGACCAAATGGAGGGTCCATTAGGAATGTACATGTTGATTATTTTACCAAAGGTGATTATAATTTAAGTGAGGAGGAGTTGAAAGCTGGTAAAGCAAAGGTTGAAGGACTTGTAAAGCTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA

Protein sequence

>Msa0242720

MGVQTQEYATPAAVPPVRLFKAMSLEFHNLFPKLVEVIQSIEFTEGTGGAGTIKKLTTVEGGETKYVLHRVDEIDETKFVYNFSIIGGTGLADTLEKVSFKSQLVEGPNGGSIRNVHVDYFTKGDYNLSEEELKAGKAKVEGLVKLVEGYLLANPDY*