AlfalfaGEDB | Msa0242720

M. sativa cultivar zhongmu-4 / Msa0242720

KEGG: -
GO: -
PFAM: PF00407.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242720	XP_003594836.1	99.363	157	1	0	1	157	1	157	2.04e-108	315

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242720	sp\|E6YBW4\|PR10_SOYBN	77.707	157	35	0	1	157	1	157	3.65e-85	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242720	G7IMZ2	99.363	157	1	0	1	157	1	157	9.74e-109	315

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0242720	-0.802904	4.495931e-49	-8.615850e-47
Msa0000800	Msa0242720	0.839585	1.451086e-57	-8.615850e-47
Msa0004940	Msa0242720	0.824075	9.825632e-54	-8.615850e-47
Msa0004990	Msa0242720	0.800206	1.606879e-48	-8.615850e-47
Msa0006080	Msa0242720	0.808401	3.154494e-50	-8.615850e-47
Msa0006480	Msa0242720	0.835689	1.450013e-56	-8.615850e-47
Msa0007810	Msa0242720	-0.824962	6.072609e-54	-8.615850e-47
Msa0010150	Msa0242720	0.807274	5.475391e-50	-8.615850e-47
Msa0011010	Msa0242720	0.827727	1.333631e-54	-8.615850e-47
Msa0011040	Msa0242720	0.821325	4.287760e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0242720	MtrunA17_Chr2g0295081	99.363	157	1	1	157	1	157	1.88e-112	315
Msa0242720	MtrunA17_Chr2g0295021	60.510	157	62	1	157	1	157	2.87e-63	191
Msa0242720	MtrunA17_Chr2g0295001	60.510	157	62	1	157	1	157	2.87e-63	191
Msa0242720	MtrunA17_Chr2g0295064	58.599	157	65	1	157	68	224	4.13e-61	188
Msa0242720	MtrunA17_Chr2g0295041	57.962	157	66	1	157	1	157	1.22e-59	182
Msa0242720	MtrunA17_Chr2g0295051	56.688	157	68	1	157	1	157	3.12e-58	178
Msa0242720	MtrunA17_Chr4g0067951	55.414	157	70	1	157	1	157	5.26e-56	172
Msa0242720	MtrunA17_Chr6g0462311	54.140	157	72	1	157	1	157	1.38e-54	169
Msa0242720	MtrunA17_Chr2g0295141	48.408	157	81	1	157	1	157	6.60e-50	157
Msa0242720	MtrunA17_Chr2g0295091	47.771	157	82	1	157	1	157	2.42e-48	153

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 83 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGGAACAGCAGCAG+GGG	0.564864	2_2:-19075240	None:intergenic
AAGAAGCTCACCACAGTTGA+AGG	0.458485	2_2:+19075371	Msa0242720:CDS
AAGGTTGGGTTGTAAGATGG+GGG	0.654059	2_2:+19076240	Msa0242720:three_prime_UTR
AATAACAACCAGATTAAGGT+TGG	0.443346	2_2:+19076225	Msa0242720:three_prime_UTR
AATTAAGCTCAGTATGTGTT+TGG	0.504243	2_2:-19075003	None:intergenic
AATTAATAACAACCAGATTA+AGG	0.281625	2_2:+19076221	Msa0242720:three_prime_UTR
AATTAGAGTTAATAAGAACT+TGG	0.482146	2_2:+19076186	Msa0242720:three_prime_UTR
ACTAGTACTACCACCATATG+GGG	0.664820	2_2:-19075034	None:intergenic
ACTGAAGGAACTGGTGGTGC+TGG	0.463110	2_2:+19075341	Msa0242720:CDS
ACTTAAATTATAATCACCTT+TGG	0.409104	2_2:-19076068	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAAGCTCAGTATGTGTT+TGG	-	chr2_2:19075006-19075025	None:intergenic	30.0%
CATTGAGAAATTCTTCATCA+TGG	+	chr2_2:19075193-19075212	Msa0242720:exon	30.0%
GTTATGAAACTCTAATGACA+TGG	-	chr2_2:19075279-19075298	None:intergenic	30.0%
TGAGTGAATTTGATGAATAC+AGG	+	chr2_2:19075863-19075882	Msa0242720:intron	30.0%
GTGTACAACTTTAGCATTAT+TGG	+	chr2_2:19075941-19075960	Msa0242720:CDS	30.0%
GTACAACTTTAGCATTATTG+GGG	+	chr2_2:19075943-19075962	Msa0242720:CDS	30.0%
TACAACTTTAGCATTATTGG+GGG	+	chr2_2:19075944-19075963	Msa0242720:CDS	30.0%
ATCAACATGTACATTCCTAA+TGG	-	chr2_2:19076041-19076060	None:intergenic	30.0%
AATAACAACCAGATTAAGGT+TGG	+	chr2_2:19076225-19076244	Msa0242720:three_prime_UTR	30.0%
ATAACAACCAGATTAAGGTT+GGG	+	chr2_2:19076226-19076245	Msa0242720:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	19074926	19076528	19074926	ID=Msa0242720;Name=Msa0242720
chr2_2	mRNA	19074926	19076528	19074926	ID=Msa0242720-mRNA-1;Parent=Msa0242720;Name=Msa0242720-mRNA-1;_AED=0.37;_eAED=0.37;_QI=286\|1\|1\|1\|1\|1\|2\|351\|157
chr2_2	exon	19074926	19075392	19074926	ID=Msa0242720-mRNA-1:exon:7777;Parent=Msa0242720-mRNA-1
chr2_2	exon	19075885	19076528	19075885	ID=Msa0242720-mRNA-1:exon:7778;Parent=Msa0242720-mRNA-1
chr2_2	five_prime_UTR	19074926	19075211	19074926	ID=Msa0242720-mRNA-1:five_prime_utr;Parent=Msa0242720-mRNA-1
chr2_2	CDS	19075212	19075392	19075212	ID=Msa0242720-mRNA-1:cds;Parent=Msa0242720-mRNA-1
chr2_2	CDS	19075885	19076177	19075885	ID=Msa0242720-mRNA-1:cds;Parent=Msa0242720-mRNA-1
chr2_2	three_prime_UTR	19076178	19076528	19076178	ID=Msa0242720-mRNA-1:three_prime_utr;Parent=Msa0242720-mRNA-1

Gene Sequence

>Msa0242720

ATGGGTGTACAAACTCAGGAGTATGCTACCCCTGCTGCTGTTCCTCCTGTTAGGCTCTTCAAAGCCATGTCATTAGAGTTTCATAACCTCTTCCCAAAGCTTGTGGAAGTGATCCAAAGTATTGAGTTCACTGAAGGAACTGGTGGTGCTGGAACAATCAAGAAGCTCACCACAGTTGAAGGTGGAGAGACCAAGTATGTGCTACACAGAGTGGATGAAATTGATGAGACTAAATTTGTGTACAACTTTAGCATTATTGGGGGCACTGGATTGGCTGACACATTGGAGAAAGTCTCATTCAAGAGCCAATTGGTTGAAGGACCAAATGGAGGGTCCATTAGGAATGTACATGTTGATTATTTTACCAAAGGTGATTATAATTTAAGTGAGGAGGAGTTGAAAGCTGGTAAAGCAAAGGTTGAAGGACTTGTAAAGCTTGTTGAAGGGTACCTTTTGGCAAATCCTGATTACTGA

Protein sequence

>Msa0242720

MGVQTQEYATPAAVPPVRLFKAMSLEFHNLFPKLVEVIQSIEFTEGTGGAGTIKKLTTVEGGETKYVLHRVDEIDETKFVYNFSIIGGTGLADTLEKVSFKSQLVEGPNGGSIRNVHVDYFTKGDYNLSEEELKAGKAKVEGLVKLVEGYLLANPDY*