Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065510 | KEH41817.1 | 80.220 | 91 | 17 | 1 | 1 | 90 | 87 | 177 | 1.87e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0065510 | A0A072VJ46 | 80.220 | 91 | 17 | 1 | 1 | 90 | 87 | 177 | 8.95e-26 | 105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0065510 | 0.910049 | 2.890458e-82 | -8.615850e-47 |
| Msa0065510 | Msa0087010 | 0.909475 | 5.465868e-82 | -8.615850e-47 |
| Msa0065510 | Msa1306260 | 0.800497 | 1.401551e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAATGCTGGTAGTTTA+TGG | 0.143974 | 1_2:+27868278 | Msa0065510:CDS |
| TGCTGGTAGTTTATGGTTAT+TGG | 0.150578 | 1_2:+27868285 | Msa0065510:CDS |
| CTGCCTTCTGCAAAGTTGCT+TGG | 0.273006 | 1_2:-27868426 | None:intergenic |
| GCTGGTAGTTTATGGTTATT+GGG | 0.315171 | 1_2:+27868286 | Msa0065510:CDS |
| AAACTACCAGCATTAATTTC+AGG | 0.316356 | 1_2:-27868274 | None:intergenic |
| TTGGCTCCTAGTGTTGAATA+AGG | 0.358271 | 1_2:-27868407 | None:intergenic |
| AGACAGGAGTCTAGAATAGT+TGG | 0.450727 | 1_2:+27869947 | Msa0065510:intron |
| CCATCAAAATCTACTGGAAA+GGG | 0.459432 | 1_2:+27868475 | Msa0065510:CDS |
| AGATTGGCTAGATGTTGAAC+TGG | 0.460501 | 1_2:+27868366 | Msa0065510:CDS |
| GCAGCTCCATCAAAATCTAC+TGG | 0.466548 | 1_2:+27868469 | Msa0065510:CDS |
| ATGATGATGATGATTTAGAT+TGG | 0.471179 | 1_2:+27868350 | Msa0065510:CDS |
| GGAAAGGGAAAGGGAAATCA+AGG | 0.485934 | 1_2:+27868496 | Msa0065510:CDS |
| AAAGGGAAATCAAGGGGCAA+AGG | 0.488992 | 1_2:+27868504 | Msa0065510:CDS |
| AAGGGAAATCAAGGGGCAAA+GGG | 0.491418 | 1_2:+27868505 | Msa0065510:CDS |
| CAAGGGGCAAAGGGAAAGCA+AGG | 0.496510 | 1_2:+27868514 | Msa0065510:CDS |
| TGGCTCCTAGTGTTGAATAA+GGG | 0.500293 | 1_2:-27868406 | None:intergenic |
| CCGAGCCCTTATTCAACACT+AGG | 0.506076 | 1_2:+27868401 | Msa0065510:CDS |
| AAAATCTACTGGAAAGGGAA+AGG | 0.525200 | 1_2:+27868480 | Msa0065510:CDS |
| ACTGGAAAGGGAAAGGGAAA+GGG | 0.526937 | 1_2:+27868487 | Msa0065510:CDS |
| AAATCTACTGGAAAGGGAAA+GGG | 0.528332 | 1_2:+27868481 | Msa0065510:CDS |
| GAGAAAGTTTCCAAGGGAAA+AGG | 0.528586 | 1_2:+27868538 | Msa0065510:CDS |
| AAAGGGAAAGGGAAATCAAG+GGG | 0.533778 | 1_2:+27868498 | Msa0065510:CDS |
| TACTGGAAAGGGAAAGGGAA+AGG | 0.534955 | 1_2:+27868486 | Msa0065510:CDS |
| CCTAGTGTTGAATAAGGGCT+CGG | 0.535922 | 1_2:-27868401 | None:intergenic |
| TCCATCAAAATCTACTGGAA+AGG | 0.541789 | 1_2:+27868474 | Msa0065510:CDS |
| GATGATCCTGAAATTAATGC+TGG | 0.573270 | 1_2:+27868268 | Msa0065510:CDS |
| GCAAGGGGAGAAAGTTTCCA+AGG | 0.585552 | 1_2:+27868531 | Msa0065510:CDS |
| GAGCCAAGCAACTTTGCAGA+AGG | 0.597989 | 1_2:+27868423 | Msa0065510:CDS |
| GAAAGGGAAAGGGAAATCAA+GGG | 0.604555 | 1_2:+27868497 | Msa0065510:CDS |
| CAAGGGAAAAGGAAAGAAAG+TGG | 0.607971 | 1_2:+27868549 | Msa0065510:CDS |
| AGGGGCAAAGGGAAAGCAAG+GGG | 0.608380 | 1_2:+27868516 | Msa0065510:CDS |
| TGGATCGATTGTTAAGCACA+AGG | 0.628444 | 1_2:+27869967 | Msa0065510:CDS |
| GATGAAGTTCGTATTCGTGA+TGG | 0.631886 | 1_2:+27868310 | Msa0065510:CDS |
| AAGGGGCAAAGGGAAAGCAA+GGG | 0.648011 | 1_2:+27868515 | Msa0065510:CDS |
| CAAGGGGAGAAAGTTTCCAA+GGG | 0.666213 | 1_2:+27868532 | Msa0065510:CDS |
| CTAGATGTTGAACTGGCGAG+TGG | 0.684599 | 1_2:+27868373 | Msa0065510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTACAAATATCA+TGG | - | chr1_2:27869398-27869417 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTACAAATATCA+TGG | - | chr1_2:27869398-27869417 | None:intergenic | 10.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | - | chr1_2:27868801-27868820 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | - | chr1_2:27869234-27869253 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | + | chr1_2:27869233-27869252 | Msa0065510:intron | 15.0% |
| !!! | TTCTTAAAATAATGTTACTT+TGG | - | chr1_2:27869601-27869620 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | - | chr1_2:27869749-27869768 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | - | chr1_2:27869750-27869769 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | + | chr1_2:27869756-27869775 | Msa0065510:intron | 15.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | - | chr1_2:27868801-27868820 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | - | chr1_2:27869234-27869253 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | + | chr1_2:27869233-27869252 | Msa0065510:intron | 15.0% |
| !!! | TTCTTAAAATAATGTTACTT+TGG | - | chr1_2:27869601-27869620 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | - | chr1_2:27869749-27869768 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | - | chr1_2:27869750-27869769 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | + | chr1_2:27869756-27869775 | Msa0065510:intron | 15.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | + | chr1_2:27869324-27869343 | Msa0065510:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | - | chr1_2:27869336-27869355 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | - | chr1_2:27869373-27869392 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | + | chr1_2:27869613-27869632 | Msa0065510:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | - | chr1_2:27869642-27869661 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | + | chr1_2:27869768-27869787 | Msa0065510:intron | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | + | chr1_2:27869769-27869788 | Msa0065510:intron | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | + | chr1_2:27869919-27869938 | Msa0065510:intron | 20.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | + | chr1_2:27869324-27869343 | Msa0065510:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | - | chr1_2:27869336-27869355 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | - | chr1_2:27869373-27869392 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | + | chr1_2:27869613-27869632 | Msa0065510:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | - | chr1_2:27869642-27869661 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | + | chr1_2:27869768-27869787 | Msa0065510:intron | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | + | chr1_2:27869769-27869788 | Msa0065510:intron | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | + | chr1_2:27869919-27869938 | Msa0065510:intron | 20.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | + | chr1_2:27868278-27868297 | Msa0065510:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | + | chr1_2:27868350-27868369 | Msa0065510:CDS | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | + | chr1_2:27868750-27868769 | Msa0065510:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | + | chr1_2:27869100-27869119 | Msa0065510:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | + | chr1_2:27869165-27869184 | Msa0065510:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | + | chr1_2:27869510-27869529 | Msa0065510:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | + | chr1_2:27869671-27869690 | Msa0065510:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | + | chr1_2:27869692-27869711 | Msa0065510:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | + | chr1_2:27869704-27869723 | Msa0065510:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | - | chr1_2:27869732-27869751 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | + | chr1_2:27869767-27869786 | Msa0065510:intron | 25.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | + | chr1_2:27868278-27868297 | Msa0065510:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | + | chr1_2:27868350-27868369 | Msa0065510:CDS | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | + | chr1_2:27868750-27868769 | Msa0065510:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | + | chr1_2:27869100-27869119 | Msa0065510:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | + | chr1_2:27869165-27869184 | Msa0065510:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | + | chr1_2:27869510-27869529 | Msa0065510:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | + | chr1_2:27869671-27869690 | Msa0065510:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | + | chr1_2:27869692-27869711 | Msa0065510:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | + | chr1_2:27869704-27869723 | Msa0065510:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | - | chr1_2:27869732-27869751 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | + | chr1_2:27869767-27869786 | Msa0065510:intron | 25.0% |
| AAACTACCAGCATTAATTTC+AGG | - | chr1_2:27868277-27868296 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | + | chr1_2:27868590-27868609 | Msa0065510:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | + | chr1_2:27868591-27868610 | Msa0065510:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | + | chr1_2:27868639-27868658 | Msa0065510:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | + | chr1_2:27868645-27868664 | Msa0065510:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | - | chr1_2:27869184-27869203 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | + | chr1_2:27869441-27869460 | Msa0065510:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | + | chr1_2:27869537-27869556 | Msa0065510:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | - | chr1_2:27869656-27869675 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | - | chr1_2:27869731-27869750 | None:intergenic | 30.0% | |
| AAACTACCAGCATTAATTTC+AGG | - | chr1_2:27868277-27868296 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | + | chr1_2:27868590-27868609 | Msa0065510:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | + | chr1_2:27868591-27868610 | Msa0065510:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | + | chr1_2:27868639-27868658 | Msa0065510:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | + | chr1_2:27868645-27868664 | Msa0065510:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | - | chr1_2:27869184-27869203 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | + | chr1_2:27869441-27869460 | Msa0065510:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | + | chr1_2:27869537-27869556 | Msa0065510:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | - | chr1_2:27869656-27869675 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | - | chr1_2:27869731-27869750 | None:intergenic | 30.0% | |
| GATGATCCTGAAATTAATGC+TGG | + | chr1_2:27868268-27868287 | Msa0065510:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | + | chr1_2:27868285-27868304 | Msa0065510:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | + | chr1_2:27868286-27868305 | Msa0065510:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | + | chr1_2:27868474-27868493 | Msa0065510:CDS | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | + | chr1_2:27868475-27868494 | Msa0065510:CDS | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | + | chr1_2:27868480-27868499 | Msa0065510:CDS | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | + | chr1_2:27868481-27868500 | Msa0065510:CDS | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | + | chr1_2:27868592-27868611 | Msa0065510:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | + | chr1_2:27868593-27868612 | Msa0065510:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | + | chr1_2:27868594-27868613 | Msa0065510:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | + | chr1_2:27868618-27868637 | Msa0065510:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | + | chr1_2:27868759-27868778 | Msa0065510:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | + | chr1_2:27869268-27869287 | Msa0065510:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | - | chr1_2:27869289-27869308 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | + | chr1_2:27869471-27869490 | Msa0065510:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | - | chr1_2:27869723-27869742 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | + | chr1_2:27869931-27869950 | Msa0065510:intron | 35.0% |
| GATGATCCTGAAATTAATGC+TGG | + | chr1_2:27868268-27868287 | Msa0065510:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | + | chr1_2:27868285-27868304 | Msa0065510:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | + | chr1_2:27868286-27868305 | Msa0065510:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | + | chr1_2:27868474-27868493 | Msa0065510:CDS | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | + | chr1_2:27868475-27868494 | Msa0065510:CDS | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | + | chr1_2:27868480-27868499 | Msa0065510:CDS | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | + | chr1_2:27868481-27868500 | Msa0065510:CDS | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | + | chr1_2:27868592-27868611 | Msa0065510:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | + | chr1_2:27868593-27868612 | Msa0065510:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | + | chr1_2:27868594-27868613 | Msa0065510:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | + | chr1_2:27868618-27868637 | Msa0065510:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | + | chr1_2:27868759-27868778 | Msa0065510:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | + | chr1_2:27869268-27869287 | Msa0065510:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | - | chr1_2:27869289-27869308 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | + | chr1_2:27869471-27869490 | Msa0065510:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | - | chr1_2:27869723-27869742 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | + | chr1_2:27869931-27869950 | Msa0065510:intron | 35.0% |
| GATGAAGTTCGTATTCGTGA+TGG | + | chr1_2:27868310-27868329 | Msa0065510:CDS | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | + | chr1_2:27868366-27868385 | Msa0065510:CDS | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | - | chr1_2:27868409-27868428 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | - | chr1_2:27868410-27868429 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | - | chr1_2:27868478-27868497 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | + | chr1_2:27868497-27868516 | Msa0065510:CDS | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | + | chr1_2:27868498-27868517 | Msa0065510:CDS | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | + | chr1_2:27868538-27868557 | Msa0065510:CDS | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | - | chr1_2:27868551-27868570 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | + | chr1_2:27868549-27868568 | Msa0065510:CDS | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | - | chr1_2:27868595-27868614 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | + | chr1_2:27868766-27868785 | Msa0065510:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | + | chr1_2:27869453-27869472 | Msa0065510:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | - | chr1_2:27869472-27869491 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | + | chr1_2:27869470-27869489 | Msa0065510:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | + | chr1_2:27869947-27869966 | Msa0065510:intron | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | + | chr1_2:27869967-27869986 | Msa0065510:CDS | 40.0% | |
| GATGAAGTTCGTATTCGTGA+TGG | + | chr1_2:27868310-27868329 | Msa0065510:CDS | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | + | chr1_2:27868366-27868385 | Msa0065510:CDS | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | - | chr1_2:27868409-27868428 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | - | chr1_2:27868410-27868429 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | - | chr1_2:27868478-27868497 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | + | chr1_2:27868497-27868516 | Msa0065510:CDS | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | + | chr1_2:27868498-27868517 | Msa0065510:CDS | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | + | chr1_2:27868538-27868557 | Msa0065510:CDS | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | - | chr1_2:27868551-27868570 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | + | chr1_2:27868549-27868568 | Msa0065510:CDS | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | - | chr1_2:27868595-27868614 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | + | chr1_2:27868766-27868785 | Msa0065510:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | + | chr1_2:27869453-27869472 | Msa0065510:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | - | chr1_2:27869472-27869491 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | + | chr1_2:27869470-27869489 | Msa0065510:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | + | chr1_2:27869947-27869966 | Msa0065510:intron | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | + | chr1_2:27869967-27869986 | Msa0065510:CDS | 40.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | - | chr1_2:27868404-27868423 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | - | chr1_2:27868469-27868488 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | + | chr1_2:27868469-27868488 | Msa0065510:CDS | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | + | chr1_2:27868486-27868505 | Msa0065510:CDS | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | + | chr1_2:27868487-27868506 | Msa0065510:CDS | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | + | chr1_2:27868496-27868515 | Msa0065510:CDS | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | + | chr1_2:27868504-27868523 | Msa0065510:CDS | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | + | chr1_2:27868505-27868524 | Msa0065510:CDS | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | + | chr1_2:27868532-27868551 | Msa0065510:CDS | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | + | chr1_2:27868609-27868628 | Msa0065510:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | + | chr1_2:27868673-27868692 | Msa0065510:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | + | chr1_2:27868679-27868698 | Msa0065510:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | - | chr1_2:27869045-27869064 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | + | chr1_2:27869486-27869505 | Msa0065510:intron | 45.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | - | chr1_2:27868404-27868423 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | - | chr1_2:27868469-27868488 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | + | chr1_2:27868469-27868488 | Msa0065510:CDS | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | + | chr1_2:27868486-27868505 | Msa0065510:CDS | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | + | chr1_2:27868487-27868506 | Msa0065510:CDS | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | + | chr1_2:27868496-27868515 | Msa0065510:CDS | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | + | chr1_2:27868504-27868523 | Msa0065510:CDS | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | + | chr1_2:27868505-27868524 | Msa0065510:CDS | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | + | chr1_2:27868532-27868551 | Msa0065510:CDS | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | + | chr1_2:27868609-27868628 | Msa0065510:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | + | chr1_2:27868673-27868692 | Msa0065510:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | + | chr1_2:27868679-27868698 | Msa0065510:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | - | chr1_2:27869045-27869064 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | + | chr1_2:27869486-27869505 | Msa0065510:intron | 45.0% | |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | - | chr1_2:27869879-27869898 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | - | chr1_2:27869879-27869898 | None:intergenic | 5.0% |
| CTAGATGTTGAACTGGCGAG+TGG | + | chr1_2:27868373-27868392 | Msa0065510:CDS | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | + | chr1_2:27868401-27868420 | Msa0065510:CDS | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | + | chr1_2:27868423-27868442 | Msa0065510:CDS | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | - | chr1_2:27868429-27868448 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | + | chr1_2:27868515-27868534 | Msa0065510:CDS | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | + | chr1_2:27868531-27868550 | Msa0065510:CDS | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | + | chr1_2:27868664-27868683 | Msa0065510:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | + | chr1_2:27868667-27868686 | Msa0065510:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | + | chr1_2:27868997-27869016 | Msa0065510:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | + | chr1_2:27868998-27869017 | Msa0065510:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | - | chr1_2:27869002-27869021 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | - | chr1_2:27869007-27869026 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | - | chr1_2:27869037-27869056 | None:intergenic | 50.0% | |
| CTAGATGTTGAACTGGCGAG+TGG | + | chr1_2:27868373-27868392 | Msa0065510:CDS | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | + | chr1_2:27868401-27868420 | Msa0065510:CDS | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | + | chr1_2:27868423-27868442 | Msa0065510:CDS | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | - | chr1_2:27868429-27868448 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | + | chr1_2:27868515-27868534 | Msa0065510:CDS | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | + | chr1_2:27868531-27868550 | Msa0065510:CDS | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | + | chr1_2:27868664-27868683 | Msa0065510:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | + | chr1_2:27868667-27868686 | Msa0065510:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | + | chr1_2:27868997-27869016 | Msa0065510:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | + | chr1_2:27868998-27869017 | Msa0065510:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | - | chr1_2:27869002-27869021 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | - | chr1_2:27869007-27869026 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | - | chr1_2:27869037-27869056 | None:intergenic | 50.0% | |
| CAAGGGGCAAAGGGAAAGCA+AGG | + | chr1_2:27868514-27868533 | Msa0065510:CDS | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | + | chr1_2:27868516-27868535 | Msa0065510:CDS | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | - | chr1_2:27868994-27869013 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | - | chr1_2:27868995-27869014 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | + | chr1_2:27869001-27869020 | Msa0065510:intron | 55.0% |
| CAAGGGGCAAAGGGAAAGCA+AGG | + | chr1_2:27868514-27868533 | Msa0065510:CDS | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | + | chr1_2:27868516-27868535 | Msa0065510:CDS | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | - | chr1_2:27868994-27869013 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | - | chr1_2:27868995-27869014 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | + | chr1_2:27869001-27869020 | Msa0065510:intron | 55.0% |
| GTCAAAGCGGAAACGCGGCG+TGG | - | chr1_2:27869032-27869051 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+TGG | - | chr1_2:27869032-27869051 | None:intergenic | 65.0% | |
| ! | GCGGTATGAGGGCACGACGC+AGG | - | chr1_2:27868983-27869002 | None:intergenic | 70.0% |
| ! | GCGGTATGAGGGCACGACGC+AGG | - | chr1_2:27868983-27869002 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 27868265 | 27870012 | 27868265 | ID=Msa0065510;Name=Msa0065510 |
| chr1_2 | mRNA | 27868265 | 27870012 | 27868265 | ID=Msa0065510-mRNA-1;Parent=Msa0065510;Name=Msa0065510-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|1|1|2|0|121 |
| chr1_2 | exon | 27868265 | 27868570 | 27868265 | ID=Msa0065510-mRNA-1:exon:9622;Parent=Msa0065510-mRNA-1 |
| chr1_2 | exon | 27869953 | 27870012 | 27869953 | ID=Msa0065510-mRNA-1:exon:9623;Parent=Msa0065510-mRNA-1 |
| chr1_2 | CDS | 27868265 | 27868570 | 27868265 | ID=Msa0065510-mRNA-1:cds;Parent=Msa0065510-mRNA-1 |
| chr1_2 | CDS | 27869953 | 27870012 | 27869953 | ID=Msa0065510-mRNA-1:cds;Parent=Msa0065510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
