Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017280 | KEH41817.1 | 80.220 | 91 | 17 | 1 | 1 | 90 | 87 | 177 | 1.87e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0017290 | 0.826931 | 2.069415e-54 | -8.615850e-47 |
| Msa0017280 | Msa0065500 | 0.836023 | 1.193235e-56 | -8.615850e-47 |
| Msa0017280 | Msa0065510 | 0.910049 | 2.890458e-82 | -8.615850e-47 |
| Msa0017280 | Msa0087010 | 0.993370 | 2.883293e-199 | -8.615850e-47 |
| Msa0017280 | Msa0087020 | 0.830422 | 2.962979e-55 | -8.615850e-47 |
| Msa0017280 | Msa0094760 | 0.826501 | 2.620248e-54 | -8.615850e-47 |
| Msa0017280 | Msa0157210 | 0.853710 | 1.995503e-61 | -8.615850e-47 |
| Msa0017280 | Msa0520410 | 0.848119 | 7.508966e-60 | -8.615850e-47 |
| Msa0017280 | Msa0542240 | 0.826580 | 2.509485e-54 | -8.615850e-47 |
| Msa0017280 | Msa0606960 | 0.831284 | 1.821336e-55 | -8.615850e-47 |
| Msa0017280 | Msa0655670 | 0.814524 | 1.474519e-51 | -8.615850e-47 |
| Msa0017280 | Msa1003060 | 0.802681 | 4.998528e-49 | -8.615850e-47 |
| Msa0017280 | Msa1009560 | 0.849835 | 2.504639e-60 | -8.615850e-47 |
| Msa0017280 | Msa1306260 | 0.860144 | 2.534541e-63 | -8.615850e-47 |
| Msa0017280 | Msa1405570 | 0.846399 | 2.226250e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAATGCTGGTAGTTTA+TGG | 0.143974 | 1_1:-28654034 | Msa0017280:CDS |
| TGCTGGTAGTTTATGGTTAT+TGG | 0.150578 | 1_1:-28654027 | Msa0017280:CDS |
| CTGCCTTCTGCAAAGTTGCT+TGG | 0.273006 | 1_1:+28653886 | None:intergenic |
| GCTGGTAGTTTATGGTTATT+GGG | 0.315171 | 1_1:-28654026 | Msa0017280:CDS |
| AAACTACCAGCATTAATTTC+AGG | 0.316356 | 1_1:+28654038 | None:intergenic |
| TTGGCTCCTAGTGTTGAATA+AGG | 0.358271 | 1_1:+28653905 | None:intergenic |
| AGACAGGAGTCTAGAATAGT+TGG | 0.450727 | 1_1:-28652364 | Msa0017280:intron |
| CCATCAAAATCTACTGGAAA+GGG | 0.459432 | 1_1:-28653837 | Msa0017280:CDS |
| AGATTGGCTAGATGTTGAAC+TGG | 0.460501 | 1_1:-28653946 | Msa0017280:CDS |
| GCAGCTCCATCAAAATCTAC+TGG | 0.466548 | 1_1:-28653843 | Msa0017280:CDS |
| ATGATGATGATGATTTAGAT+TGG | 0.471179 | 1_1:-28653962 | Msa0017280:CDS |
| GGAAAGGGAAAGGGAAATCA+AGG | 0.485934 | 1_1:-28653816 | Msa0017280:CDS |
| AAAGGGAAATCAAGGGGCAA+AGG | 0.488992 | 1_1:-28653808 | Msa0017280:CDS |
| AAGGGAAATCAAGGGGCAAA+GGG | 0.491418 | 1_1:-28653807 | Msa0017280:CDS |
| CAAGGGGCAAAGGGAAAGCA+AGG | 0.496510 | 1_1:-28653798 | Msa0017280:CDS |
| TGGCTCCTAGTGTTGAATAA+GGG | 0.500293 | 1_1:+28653906 | None:intergenic |
| CCGAGCCCTTATTCAACACT+AGG | 0.506076 | 1_1:-28653911 | Msa0017280:CDS |
| AAAATCTACTGGAAAGGGAA+AGG | 0.525200 | 1_1:-28653832 | Msa0017280:CDS |
| ACTGGAAAGGGAAAGGGAAA+GGG | 0.526937 | 1_1:-28653825 | Msa0017280:CDS |
| AAATCTACTGGAAAGGGAAA+GGG | 0.528332 | 1_1:-28653831 | Msa0017280:CDS |
| GAGAAAGTTTCCAAGGGAAA+AGG | 0.528586 | 1_1:-28653774 | Msa0017280:CDS |
| AAAGGGAAAGGGAAATCAAG+GGG | 0.533778 | 1_1:-28653814 | Msa0017280:CDS |
| TACTGGAAAGGGAAAGGGAA+AGG | 0.534955 | 1_1:-28653826 | Msa0017280:CDS |
| CCTAGTGTTGAATAAGGGCT+CGG | 0.535922 | 1_1:+28653911 | None:intergenic |
| TCCATCAAAATCTACTGGAA+AGG | 0.541789 | 1_1:-28653838 | Msa0017280:CDS |
| GATGATCCTGAAATTAATGC+TGG | 0.573270 | 1_1:-28654044 | Msa0017280:CDS |
| GCAAGGGGAGAAAGTTTCCA+AGG | 0.585552 | 1_1:-28653781 | Msa0017280:CDS |
| GAGCCAAGCAACTTTGCAGA+AGG | 0.597989 | 1_1:-28653889 | Msa0017280:CDS |
| GAAAGGGAAAGGGAAATCAA+GGG | 0.604555 | 1_1:-28653815 | Msa0017280:CDS |
| CAAGGGAAAAGGAAAGAAAG+TGG | 0.607971 | 1_1:-28653763 | Msa0017280:intron |
| AGGGGCAAAGGGAAAGCAAG+GGG | 0.608380 | 1_1:-28653796 | Msa0017280:CDS |
| TGGATCGATTGTTAAGCACA+AGG | 0.628444 | 1_1:-28652344 | Msa0017280:CDS |
| GATGAAGTTCGTATTCGTGA+TGG | 0.631886 | 1_1:-28654002 | Msa0017280:CDS |
| AAGGGGCAAAGGGAAAGCAA+GGG | 0.648011 | 1_1:-28653797 | Msa0017280:CDS |
| CAAGGGGAGAAAGTTTCCAA+GGG | 0.666213 | 1_1:-28653780 | Msa0017280:CDS |
| CTAGATGTTGAACTGGCGAG+TGG | 0.684599 | 1_1:-28653939 | Msa0017280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTACAAATATCA+TGG | + | chr1_1:28653454-28653473 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTACAAATATCA+TGG | + | chr1_1:28653454-28653473 | None:intergenic | 10.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | + | chr1_1:28652857-28652876 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | + | chr1_1:28653290-28653309 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | - | chr1_1:28653289-28653308 | Msa0017280:intron | 15.0% |
| !!! | TCTTAAAAATAATGTTACTT+TGG | + | chr1_1:28653657-28653676 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | + | chr1_1:28653806-28653825 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | + | chr1_1:28653807-28653826 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | - | chr1_1:28653813-28653832 | Msa0017280:CDS | 15.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | + | chr1_1:28652857-28652876 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | + | chr1_1:28653290-28653309 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | - | chr1_1:28653289-28653308 | Msa0017280:intron | 15.0% |
| !!! | TCTTAAAAATAATGTTACTT+TGG | + | chr1_1:28653657-28653676 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | + | chr1_1:28653806-28653825 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | + | chr1_1:28653807-28653826 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | - | chr1_1:28653813-28653832 | Msa0017280:CDS | 15.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | - | chr1_1:28653380-28653399 | Msa0017280:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | + | chr1_1:28653392-28653411 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | + | chr1_1:28653429-28653448 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | - | chr1_1:28653670-28653689 | Msa0017280:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | + | chr1_1:28653699-28653718 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | - | chr1_1:28653825-28653844 | Msa0017280:CDS | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | - | chr1_1:28653826-28653845 | Msa0017280:CDS | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | - | chr1_1:28653976-28653995 | Msa0017280:CDS | 20.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | - | chr1_1:28653380-28653399 | Msa0017280:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | + | chr1_1:28653392-28653411 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | + | chr1_1:28653429-28653448 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | - | chr1_1:28653670-28653689 | Msa0017280:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | + | chr1_1:28653699-28653718 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | - | chr1_1:28653825-28653844 | Msa0017280:CDS | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | - | chr1_1:28653826-28653845 | Msa0017280:CDS | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | - | chr1_1:28653976-28653995 | Msa0017280:CDS | 20.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | - | chr1_1:28652334-28652353 | Msa0017280:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | - | chr1_1:28652406-28652425 | Msa0017280:intron | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | - | chr1_1:28652806-28652825 | Msa0017280:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | - | chr1_1:28653156-28653175 | Msa0017280:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | - | chr1_1:28653221-28653240 | Msa0017280:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | - | chr1_1:28653566-28653585 | Msa0017280:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | - | chr1_1:28653728-28653747 | Msa0017280:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | - | chr1_1:28653749-28653768 | Msa0017280:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | - | chr1_1:28653761-28653780 | Msa0017280:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | + | chr1_1:28653789-28653808 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | - | chr1_1:28653824-28653843 | Msa0017280:CDS | 25.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | - | chr1_1:28652334-28652353 | Msa0017280:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | - | chr1_1:28652406-28652425 | Msa0017280:intron | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | - | chr1_1:28652806-28652825 | Msa0017280:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | - | chr1_1:28653156-28653175 | Msa0017280:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | - | chr1_1:28653221-28653240 | Msa0017280:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | - | chr1_1:28653566-28653585 | Msa0017280:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | - | chr1_1:28653728-28653747 | Msa0017280:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | - | chr1_1:28653749-28653768 | Msa0017280:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | - | chr1_1:28653761-28653780 | Msa0017280:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | + | chr1_1:28653789-28653808 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | - | chr1_1:28653824-28653843 | Msa0017280:CDS | 25.0% |
| AAACTACCAGCATTAATTTC+AGG | + | chr1_1:28652333-28652352 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | - | chr1_1:28652646-28652665 | Msa0017280:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | - | chr1_1:28652647-28652666 | Msa0017280:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | - | chr1_1:28652695-28652714 | Msa0017280:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | - | chr1_1:28652701-28652720 | Msa0017280:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | + | chr1_1:28653240-28653259 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | - | chr1_1:28653497-28653516 | Msa0017280:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | - | chr1_1:28653593-28653612 | Msa0017280:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | + | chr1_1:28653713-28653732 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | + | chr1_1:28653788-28653807 | None:intergenic | 30.0% | |
| AAACTACCAGCATTAATTTC+AGG | + | chr1_1:28652333-28652352 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | - | chr1_1:28652646-28652665 | Msa0017280:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | - | chr1_1:28652647-28652666 | Msa0017280:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | - | chr1_1:28652695-28652714 | Msa0017280:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | - | chr1_1:28652701-28652720 | Msa0017280:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | + | chr1_1:28653240-28653259 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | - | chr1_1:28653497-28653516 | Msa0017280:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | - | chr1_1:28653593-28653612 | Msa0017280:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | + | chr1_1:28653713-28653732 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | + | chr1_1:28653788-28653807 | None:intergenic | 30.0% | |
| GATGATCCTGAAATTAATGC+TGG | - | chr1_1:28652324-28652343 | Msa0017280:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | - | chr1_1:28652341-28652360 | Msa0017280:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | - | chr1_1:28652342-28652361 | Msa0017280:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | - | chr1_1:28652530-28652549 | Msa0017280:intron | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | - | chr1_1:28652531-28652550 | Msa0017280:intron | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | - | chr1_1:28652536-28652555 | Msa0017280:intron | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | - | chr1_1:28652537-28652556 | Msa0017280:intron | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | - | chr1_1:28652648-28652667 | Msa0017280:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | - | chr1_1:28652649-28652668 | Msa0017280:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | - | chr1_1:28652650-28652669 | Msa0017280:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | - | chr1_1:28652674-28652693 | Msa0017280:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | - | chr1_1:28652815-28652834 | Msa0017280:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | - | chr1_1:28653324-28653343 | Msa0017280:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | + | chr1_1:28653345-28653364 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | - | chr1_1:28653527-28653546 | Msa0017280:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | + | chr1_1:28653780-28653799 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | - | chr1_1:28653988-28654007 | Msa0017280:CDS | 35.0% |
| GATGATCCTGAAATTAATGC+TGG | - | chr1_1:28652324-28652343 | Msa0017280:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | - | chr1_1:28652341-28652360 | Msa0017280:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | - | chr1_1:28652342-28652361 | Msa0017280:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | - | chr1_1:28652530-28652549 | Msa0017280:intron | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | - | chr1_1:28652531-28652550 | Msa0017280:intron | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | - | chr1_1:28652536-28652555 | Msa0017280:intron | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | - | chr1_1:28652537-28652556 | Msa0017280:intron | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | - | chr1_1:28652648-28652667 | Msa0017280:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | - | chr1_1:28652649-28652668 | Msa0017280:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | - | chr1_1:28652650-28652669 | Msa0017280:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | - | chr1_1:28652674-28652693 | Msa0017280:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | - | chr1_1:28652815-28652834 | Msa0017280:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | - | chr1_1:28653324-28653343 | Msa0017280:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | + | chr1_1:28653345-28653364 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | - | chr1_1:28653527-28653546 | Msa0017280:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | + | chr1_1:28653780-28653799 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | - | chr1_1:28653988-28654007 | Msa0017280:CDS | 35.0% |
| GATGAAGTTCGTATTCGTGA+TGG | - | chr1_1:28652366-28652385 | Msa0017280:intron | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | - | chr1_1:28652422-28652441 | Msa0017280:intron | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | + | chr1_1:28652465-28652484 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | + | chr1_1:28652466-28652485 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | + | chr1_1:28652534-28652553 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | - | chr1_1:28652553-28652572 | Msa0017280:intron | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | - | chr1_1:28652554-28652573 | Msa0017280:intron | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | - | chr1_1:28652594-28652613 | Msa0017280:intron | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | + | chr1_1:28652607-28652626 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | - | chr1_1:28652605-28652624 | Msa0017280:intron | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | + | chr1_1:28652651-28652670 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | - | chr1_1:28652822-28652841 | Msa0017280:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | - | chr1_1:28653509-28653528 | Msa0017280:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | + | chr1_1:28653528-28653547 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | - | chr1_1:28653526-28653545 | Msa0017280:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | - | chr1_1:28654004-28654023 | Msa0017280:CDS | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | - | chr1_1:28654024-28654043 | Msa0017280:CDS | 40.0% | |
| GATGAAGTTCGTATTCGTGA+TGG | - | chr1_1:28652366-28652385 | Msa0017280:intron | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | - | chr1_1:28652422-28652441 | Msa0017280:intron | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | + | chr1_1:28652465-28652484 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | + | chr1_1:28652466-28652485 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | + | chr1_1:28652534-28652553 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | - | chr1_1:28652553-28652572 | Msa0017280:intron | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | - | chr1_1:28652554-28652573 | Msa0017280:intron | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | - | chr1_1:28652594-28652613 | Msa0017280:intron | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | + | chr1_1:28652607-28652626 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | - | chr1_1:28652605-28652624 | Msa0017280:intron | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | + | chr1_1:28652651-28652670 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | - | chr1_1:28652822-28652841 | Msa0017280:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | - | chr1_1:28653509-28653528 | Msa0017280:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | + | chr1_1:28653528-28653547 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | - | chr1_1:28653526-28653545 | Msa0017280:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | - | chr1_1:28654004-28654023 | Msa0017280:CDS | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | - | chr1_1:28654024-28654043 | Msa0017280:CDS | 40.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | + | chr1_1:28652460-28652479 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | + | chr1_1:28652525-28652544 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | - | chr1_1:28652525-28652544 | Msa0017280:intron | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | - | chr1_1:28652542-28652561 | Msa0017280:intron | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | - | chr1_1:28652543-28652562 | Msa0017280:intron | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | - | chr1_1:28652552-28652571 | Msa0017280:intron | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | - | chr1_1:28652560-28652579 | Msa0017280:intron | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | - | chr1_1:28652561-28652580 | Msa0017280:intron | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | - | chr1_1:28652588-28652607 | Msa0017280:intron | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | - | chr1_1:28652665-28652684 | Msa0017280:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | - | chr1_1:28652729-28652748 | Msa0017280:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | - | chr1_1:28652735-28652754 | Msa0017280:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | + | chr1_1:28653101-28653120 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | - | chr1_1:28653542-28653561 | Msa0017280:intron | 45.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | + | chr1_1:28652460-28652479 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | + | chr1_1:28652525-28652544 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | - | chr1_1:28652525-28652544 | Msa0017280:intron | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | - | chr1_1:28652542-28652561 | Msa0017280:intron | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | - | chr1_1:28652543-28652562 | Msa0017280:intron | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | - | chr1_1:28652552-28652571 | Msa0017280:intron | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | - | chr1_1:28652560-28652579 | Msa0017280:intron | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | - | chr1_1:28652561-28652580 | Msa0017280:intron | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | - | chr1_1:28652588-28652607 | Msa0017280:intron | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | - | chr1_1:28652665-28652684 | Msa0017280:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | - | chr1_1:28652729-28652748 | Msa0017280:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | - | chr1_1:28652735-28652754 | Msa0017280:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | + | chr1_1:28653101-28653120 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | - | chr1_1:28653542-28653561 | Msa0017280:intron | 45.0% | |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | + | chr1_1:28653936-28653955 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | + | chr1_1:28653936-28653955 | None:intergenic | 5.0% |
| CTAGATGTTGAACTGGCGAG+TGG | - | chr1_1:28652429-28652448 | Msa0017280:intron | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | - | chr1_1:28652457-28652476 | Msa0017280:intron | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | - | chr1_1:28652479-28652498 | Msa0017280:intron | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | + | chr1_1:28652485-28652504 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | - | chr1_1:28652571-28652590 | Msa0017280:intron | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | - | chr1_1:28652587-28652606 | Msa0017280:intron | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | - | chr1_1:28652720-28652739 | Msa0017280:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | - | chr1_1:28652723-28652742 | Msa0017280:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | - | chr1_1:28653053-28653072 | Msa0017280:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | - | chr1_1:28653054-28653073 | Msa0017280:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | + | chr1_1:28653058-28653077 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | + | chr1_1:28653063-28653082 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | + | chr1_1:28653093-28653112 | None:intergenic | 50.0% | |
| CTAGATGTTGAACTGGCGAG+TGG | - | chr1_1:28652429-28652448 | Msa0017280:intron | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | - | chr1_1:28652457-28652476 | Msa0017280:intron | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | - | chr1_1:28652479-28652498 | Msa0017280:intron | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | + | chr1_1:28652485-28652504 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | - | chr1_1:28652571-28652590 | Msa0017280:intron | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | - | chr1_1:28652587-28652606 | Msa0017280:intron | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | - | chr1_1:28652720-28652739 | Msa0017280:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | - | chr1_1:28652723-28652742 | Msa0017280:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | - | chr1_1:28653053-28653072 | Msa0017280:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | - | chr1_1:28653054-28653073 | Msa0017280:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | + | chr1_1:28653058-28653077 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | + | chr1_1:28653063-28653082 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | + | chr1_1:28653093-28653112 | None:intergenic | 50.0% | |
| CAAGGGGCAAAGGGAAAGCA+AGG | - | chr1_1:28652570-28652589 | Msa0017280:intron | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | - | chr1_1:28652572-28652591 | Msa0017280:intron | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | + | chr1_1:28653050-28653069 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | + | chr1_1:28653051-28653070 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | - | chr1_1:28653057-28653076 | Msa0017280:intron | 55.0% |
| CAAGGGGCAAAGGGAAAGCA+AGG | - | chr1_1:28652570-28652589 | Msa0017280:intron | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | - | chr1_1:28652572-28652591 | Msa0017280:intron | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | + | chr1_1:28653050-28653069 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | + | chr1_1:28653051-28653070 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | - | chr1_1:28653057-28653076 | Msa0017280:intron | 55.0% |
| GTCAAAGCGGAAACGCGGCG+TGG | + | chr1_1:28653088-28653107 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+TGG | + | chr1_1:28653088-28653107 | None:intergenic | 65.0% | |
| ! | GCGGTATGAGGGCACGACGC+AGG | + | chr1_1:28653039-28653058 | None:intergenic | 70.0% |
| ! | GCGGTATGAGGGCACGACGC+AGG | + | chr1_1:28653039-28653058 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 28652321 | 28654069 | 28652321 | ID=Msa0017280;Name=Msa0017280 |
| chr1_1 | mRNA | 28652321 | 28654069 | 28652321 | ID=Msa0017280-mRNA-1;Parent=Msa0017280;Name=Msa0017280-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|1|1|2|0|121 |
| chr1_1 | exon | 28653764 | 28654069 | 28653764 | ID=Msa0017280-mRNA-1:exon:9571;Parent=Msa0017280-mRNA-1 |
| chr1_1 | exon | 28652321 | 28652380 | 28652321 | ID=Msa0017280-mRNA-1:exon:9570;Parent=Msa0017280-mRNA-1 |
| chr1_1 | CDS | 28653764 | 28654069 | 28653764 | ID=Msa0017280-mRNA-1:cds;Parent=Msa0017280-mRNA-1 |
| chr1_1 | CDS | 28652321 | 28652380 | 28652321 | ID=Msa0017280-mRNA-1:cds;Parent=Msa0017280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
