Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087010 | A0A072VJ46 | 80.220 | 91 | 17 | 1 | 1 | 90 | 87 | 177 | 8.95e-26 | 105 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017280 | Msa0087010 | 0.993370 | 2.883293e-199 | -8.615850e-47 |
| Msa0017290 | Msa0087010 | 0.823886 | 1.088008e-53 | -8.615850e-47 |
| Msa0065500 | Msa0087010 | 0.837205 | 5.964663e-57 | -8.615850e-47 |
| Msa0065510 | Msa0087010 | 0.909475 | 5.465868e-82 | -8.615850e-47 |
| Msa0087010 | Msa0087020 | 0.833202 | 6.106014e-56 | -8.615850e-47 |
| Msa0087010 | Msa0094760 | 0.827837 | 1.254754e-54 | -8.615850e-47 |
| Msa0087010 | Msa0157210 | 0.854248 | 1.396396e-61 | -8.615850e-47 |
| Msa0087010 | Msa0520410 | 0.847623 | 1.028296e-59 | -8.615850e-47 |
| Msa0087010 | Msa0542240 | 0.822977 | 1.774476e-53 | -8.615850e-47 |
| Msa0087010 | Msa0606960 | 0.835876 | 1.300029e-56 | -8.615850e-47 |
| Msa0087010 | Msa0655670 | 0.806004 | 1.015432e-49 | -8.615850e-47 |
| Msa0087010 | Msa1003060 | 0.802873 | 4.562888e-49 | -8.615850e-47 |
| Msa0087010 | Msa1009560 | 0.848379 | 6.363325e-60 | -8.615850e-47 |
| Msa0087010 | Msa1252370 | 0.801059 | 1.076384e-48 | -8.615850e-47 |
| Msa0087010 | Msa1306260 | 0.860720 | 1.696378e-63 | -8.615850e-47 |
| Msa0087010 | Msa1405570 | 0.841215 | 5.440788e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTAATGCTGGTAGTTTA+TGG | 0.143974 | 1_2:-67805035 | Msa0087010:CDS |
| TGCTGGTAGTTTATGGTTAT+TGG | 0.150578 | 1_2:-67805028 | Msa0087010:CDS |
| CTGCCTTCTGCAAAGTTGCT+TGG | 0.273006 | 1_2:+67804887 | None:intergenic |
| GCTGGTAGTTTATGGTTATT+GGG | 0.315171 | 1_2:-67805027 | Msa0087010:CDS |
| AAACTACCAGCATTAATTTC+AGG | 0.316356 | 1_2:+67805039 | None:intergenic |
| TTGGCTCCTAGTGTTGAATA+AGG | 0.358271 | 1_2:+67804906 | None:intergenic |
| AGACAGGAGTCTAGAATAGT+TGG | 0.450727 | 1_2:-67803365 | Msa0087010:intron |
| CCATCAAAATCTACTGGAAA+GGG | 0.459432 | 1_2:-67804838 | Msa0087010:CDS |
| AGATTGGCTAGATGTTGAAC+TGG | 0.460501 | 1_2:-67804947 | Msa0087010:CDS |
| GCAGCTCCATCAAAATCTAC+TGG | 0.466548 | 1_2:-67804844 | Msa0087010:CDS |
| ATGATGATGATGATTTAGAT+TGG | 0.471179 | 1_2:-67804963 | Msa0087010:CDS |
| GGAAAGGGAAAGGGAAATCA+AGG | 0.485934 | 1_2:-67804817 | Msa0087010:CDS |
| AAAGGGAAATCAAGGGGCAA+AGG | 0.488992 | 1_2:-67804809 | Msa0087010:CDS |
| AAGGGAAATCAAGGGGCAAA+GGG | 0.491418 | 1_2:-67804808 | Msa0087010:CDS |
| CAAGGGGCAAAGGGAAAGCA+AGG | 0.496510 | 1_2:-67804799 | Msa0087010:CDS |
| TGGCTCCTAGTGTTGAATAA+GGG | 0.500293 | 1_2:+67804907 | None:intergenic |
| CCGAGCCCTTATTCAACACT+AGG | 0.506076 | 1_2:-67804912 | Msa0087010:CDS |
| AAAATCTACTGGAAAGGGAA+AGG | 0.525200 | 1_2:-67804833 | Msa0087010:CDS |
| ACTGGAAAGGGAAAGGGAAA+GGG | 0.526937 | 1_2:-67804826 | Msa0087010:CDS |
| AAATCTACTGGAAAGGGAAA+GGG | 0.528332 | 1_2:-67804832 | Msa0087010:CDS |
| GAGAAAGTTTCCAAGGGAAA+AGG | 0.528586 | 1_2:-67804775 | Msa0087010:CDS |
| AAAGGGAAAGGGAAATCAAG+GGG | 0.533778 | 1_2:-67804815 | Msa0087010:CDS |
| TACTGGAAAGGGAAAGGGAA+AGG | 0.534955 | 1_2:-67804827 | Msa0087010:CDS |
| CCTAGTGTTGAATAAGGGCT+CGG | 0.535922 | 1_2:+67804912 | None:intergenic |
| TCCATCAAAATCTACTGGAA+AGG | 0.541789 | 1_2:-67804839 | Msa0087010:CDS |
| GATGATCCTGAAATTAATGC+TGG | 0.573270 | 1_2:-67805045 | Msa0087010:CDS |
| GCAAGGGGAGAAAGTTTCCA+AGG | 0.585552 | 1_2:-67804782 | Msa0087010:CDS |
| GAGCCAAGCAACTTTGCAGA+AGG | 0.597989 | 1_2:-67804890 | Msa0087010:CDS |
| GAAAGGGAAAGGGAAATCAA+GGG | 0.604555 | 1_2:-67804816 | Msa0087010:CDS |
| CAAGGGAAAAGGAAAGAAAG+TGG | 0.607971 | 1_2:-67804764 | Msa0087010:intron |
| AGGGGCAAAGGGAAAGCAAG+GGG | 0.608380 | 1_2:-67804797 | Msa0087010:CDS |
| TGGATCGATTGTTAAGCACA+AGG | 0.628444 | 1_2:-67803345 | Msa0087010:CDS |
| GATGAAGTTCGTATTCGTGA+TGG | 0.631886 | 1_2:-67805003 | Msa0087010:CDS |
| AAGGGGCAAAGGGAAAGCAA+GGG | 0.648011 | 1_2:-67804798 | Msa0087010:CDS |
| CAAGGGGAGAAAGTTTCCAA+GGG | 0.666213 | 1_2:-67804781 | Msa0087010:CDS |
| CTAGATGTTGAACTGGCGAG+TGG | 0.684599 | 1_2:-67804940 | Msa0087010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTACAAATATCA+TGG | + | chr1_2:67804455-67804474 | None:intergenic | 10.0% |
| !!! | TTTTTTAATTACAAATATCA+TGG | + | chr1_2:67804455-67804474 | None:intergenic | 10.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | + | chr1_2:67803858-67803877 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | + | chr1_2:67804291-67804310 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | - | chr1_2:67804290-67804309 | Msa0087010:intron | 15.0% |
| !!! | TCTTAAAAATAATGTTACTT+TGG | + | chr1_2:67804658-67804677 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | + | chr1_2:67804807-67804826 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | + | chr1_2:67804808-67804827 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | - | chr1_2:67804814-67804833 | Msa0087010:CDS | 15.0% |
| !! | AGAAATACTAATAAAATTCA+AGG | + | chr1_2:67803858-67803877 | None:intergenic | 15.0% |
| !! | TCAAAATAAACAATAAAATC+AGG | + | chr1_2:67804291-67804310 | None:intergenic | 15.0% |
| !!! | TGATTTTATTGTTTATTTTG+AGG | - | chr1_2:67804290-67804309 | Msa0087010:intron | 15.0% |
| !!! | TCTTAAAAATAATGTTACTT+TGG | + | chr1_2:67804658-67804677 | None:intergenic | 15.0% |
| !!! | CGTGTTTTTAATTAATTAAT+GGG | + | chr1_2:67804807-67804826 | None:intergenic | 15.0% |
| !!! | ACGTGTTTTTAATTAATTAA+TGG | + | chr1_2:67804808-67804827 | None:intergenic | 15.0% |
| !! | AATTAAAAACACGTTTATAT+TGG | - | chr1_2:67804814-67804833 | Msa0087010:CDS | 15.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | - | chr1_2:67804381-67804400 | Msa0087010:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | + | chr1_2:67804393-67804412 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | + | chr1_2:67804430-67804449 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | - | chr1_2:67804671-67804690 | Msa0087010:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | + | chr1_2:67804700-67804719 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | - | chr1_2:67804826-67804845 | Msa0087010:CDS | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | - | chr1_2:67804827-67804846 | Msa0087010:CDS | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | - | chr1_2:67804977-67804996 | Msa0087010:CDS | 20.0% |
| !!! | TTATCATAACCATGTTTTTA+TGG | - | chr1_2:67804381-67804400 | Msa0087010:intron | 20.0% |
| !! | TTTAAACTTCCATAAAAACA+TGG | + | chr1_2:67804393-67804412 | None:intergenic | 20.0% |
| !! | TATGATAATCAAGAAAAACA+TGG | + | chr1_2:67804430-67804449 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAGTAATAGCTA+TGG | - | chr1_2:67804671-67804690 | Msa0087010:intron | 20.0% |
| !! | AATAAGTGGTACAATAAAAA+AGG | + | chr1_2:67804700-67804719 | None:intergenic | 20.0% |
| !!! | GTTTATATTGGTTTGATAAT+GGG | - | chr1_2:67804826-67804845 | Msa0087010:CDS | 20.0% |
| !!! | TTTATATTGGTTTGATAATG+GGG | - | chr1_2:67804827-67804846 | Msa0087010:CDS | 20.0% |
| !! | AAGAGTTATATAGTGTATAA+TGG | - | chr1_2:67804977-67804996 | Msa0087010:CDS | 20.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | - | chr1_2:67803335-67803354 | Msa0087010:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | - | chr1_2:67803407-67803426 | Msa0087010:intron | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | - | chr1_2:67803807-67803826 | Msa0087010:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | - | chr1_2:67804157-67804176 | Msa0087010:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | - | chr1_2:67804222-67804241 | Msa0087010:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | - | chr1_2:67804567-67804586 | Msa0087010:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | - | chr1_2:67804729-67804748 | Msa0087010:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | - | chr1_2:67804750-67804769 | Msa0087010:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | - | chr1_2:67804762-67804781 | Msa0087010:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | + | chr1_2:67804790-67804809 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | - | chr1_2:67804825-67804844 | Msa0087010:CDS | 25.0% |
| ! | AAATTAATGCTGGTAGTTTA+TGG | - | chr1_2:67803335-67803354 | Msa0087010:CDS | 25.0% |
| !! | ATGATGATGATGATTTAGAT+TGG | - | chr1_2:67803407-67803426 | Msa0087010:intron | 25.0% |
| ! | TTTAGTACTTCTCTTACTTT+AGG | - | chr1_2:67803807-67803826 | Msa0087010:intron | 25.0% |
| ! | AAAATGTAGTGAAGAAATGA+TGG | - | chr1_2:67804157-67804176 | Msa0087010:intron | 25.0% |
| ! | TTTGTTTATGTTATCACCTA+CGG | - | chr1_2:67804222-67804241 | Msa0087010:intron | 25.0% |
| ! | CATAGAAATAGTCTATTAGT+AGG | - | chr1_2:67804567-67804586 | Msa0087010:intron | 25.0% |
| ! | ATGTGCTTTACATATTGTTA+CGG | - | chr1_2:67804729-67804748 | Msa0087010:intron | 25.0% |
| !!! | GGCAATAGTTTTTTTTTGTA+TGG | - | chr1_2:67804750-67804769 | Msa0087010:intron | 25.0% |
| !! | TTTTTGTATGGTATATCCAT+AGG | - | chr1_2:67804762-67804781 | Msa0087010:intron | 25.0% |
| ! | AATGGGTCATTGATAAAAAA+CGG | + | chr1_2:67804790-67804809 | None:intergenic | 25.0% |
| !!! | CGTTTATATTGGTTTGATAA+TGG | - | chr1_2:67804825-67804844 | Msa0087010:CDS | 25.0% |
| AAACTACCAGCATTAATTTC+AGG | + | chr1_2:67803334-67803353 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | - | chr1_2:67803647-67803666 | Msa0087010:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | - | chr1_2:67803648-67803667 | Msa0087010:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | - | chr1_2:67803696-67803715 | Msa0087010:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | - | chr1_2:67803702-67803721 | Msa0087010:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | + | chr1_2:67804241-67804260 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | - | chr1_2:67804498-67804517 | Msa0087010:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | - | chr1_2:67804594-67804613 | Msa0087010:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | + | chr1_2:67804714-67804733 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | + | chr1_2:67804789-67804808 | None:intergenic | 30.0% | |
| AAACTACCAGCATTAATTTC+AGG | + | chr1_2:67803334-67803353 | None:intergenic | 30.0% | |
| ATCCAGAGTTTATTACTGAT+TGG | - | chr1_2:67803647-67803666 | Msa0087010:intron | 30.0% | |
| ! | TCCAGAGTTTATTACTGATT+GGG | - | chr1_2:67803648-67803667 | Msa0087010:intron | 30.0% |
| GGAAGATAATAAAGAAGAAG+AGG | - | chr1_2:67803696-67803715 | Msa0087010:intron | 30.0% | |
| TAATAAAGAAGAAGAGGATG+AGG | - | chr1_2:67803702-67803721 | Msa0087010:intron | 30.0% | |
| GATAGTTCATTAAAAACCGT+AGG | + | chr1_2:67804241-67804260 | None:intergenic | 30.0% | |
| ATTCAATGAGTGTAAAGCAA+TGG | - | chr1_2:67804498-67804517 | Msa0087010:intron | 30.0% | |
| ATGAAGAAAAGCAATAGTTG+TGG | - | chr1_2:67804594-67804613 | Msa0087010:intron | 30.0% | |
| CACATGAGATAGAAAATAAG+TGG | + | chr1_2:67804714-67804733 | None:intergenic | 30.0% | |
| ATGGGTCATTGATAAAAAAC+GGG | + | chr1_2:67804789-67804808 | None:intergenic | 30.0% | |
| GATGATCCTGAAATTAATGC+TGG | - | chr1_2:67803325-67803344 | Msa0087010:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | - | chr1_2:67803342-67803361 | Msa0087010:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | - | chr1_2:67803343-67803362 | Msa0087010:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | - | chr1_2:67803531-67803550 | Msa0087010:intron | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | - | chr1_2:67803532-67803551 | Msa0087010:intron | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | - | chr1_2:67803537-67803556 | Msa0087010:intron | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | - | chr1_2:67803538-67803557 | Msa0087010:intron | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | - | chr1_2:67803649-67803668 | Msa0087010:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | - | chr1_2:67803650-67803669 | Msa0087010:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | - | chr1_2:67803651-67803670 | Msa0087010:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | - | chr1_2:67803675-67803694 | Msa0087010:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | - | chr1_2:67803816-67803835 | Msa0087010:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | - | chr1_2:67804325-67804344 | Msa0087010:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | + | chr1_2:67804346-67804365 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | - | chr1_2:67804528-67804547 | Msa0087010:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | + | chr1_2:67804781-67804800 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | - | chr1_2:67804989-67805008 | Msa0087010:CDS | 35.0% |
| GATGATCCTGAAATTAATGC+TGG | - | chr1_2:67803325-67803344 | Msa0087010:CDS | 35.0% | |
| TGCTGGTAGTTTATGGTTAT+TGG | - | chr1_2:67803342-67803361 | Msa0087010:CDS | 35.0% | |
| GCTGGTAGTTTATGGTTATT+GGG | - | chr1_2:67803343-67803362 | Msa0087010:CDS | 35.0% | |
| TCCATCAAAATCTACTGGAA+AGG | - | chr1_2:67803531-67803550 | Msa0087010:intron | 35.0% | |
| CCATCAAAATCTACTGGAAA+GGG | - | chr1_2:67803532-67803551 | Msa0087010:intron | 35.0% | |
| AAAATCTACTGGAAAGGGAA+AGG | - | chr1_2:67803537-67803556 | Msa0087010:intron | 35.0% | |
| AAATCTACTGGAAAGGGAAA+GGG | - | chr1_2:67803538-67803557 | Msa0087010:intron | 35.0% | |
| ! | CCAGAGTTTATTACTGATTG+GGG | - | chr1_2:67803649-67803668 | Msa0087010:intron | 35.0% |
| ! | CAGAGTTTATTACTGATTGG+GGG | - | chr1_2:67803650-67803669 | Msa0087010:intron | 35.0% |
| ! | AGAGTTTATTACTGATTGGG+GGG | - | chr1_2:67803651-67803670 | Msa0087010:intron | 35.0% |
| TGAAGAAAAAGAGGATGAAG+AGG | - | chr1_2:67803675-67803694 | Msa0087010:intron | 35.0% | |
| ! | TCTCTTACTTTAGGCTTTAG+AGG | - | chr1_2:67803816-67803835 | Msa0087010:intron | 35.0% |
| ATTCAAATGCAACATTTGCC+TGG | - | chr1_2:67804325-67804344 | Msa0087010:intron | 35.0% | |
| GTGTAGAAGTTTACATATCC+AGG | + | chr1_2:67804346-67804365 | None:intergenic | 35.0% | |
| ACTGGCTAAATGATCTTGTT+GGG | - | chr1_2:67804528-67804547 | Msa0087010:intron | 35.0% | |
| TTGATAAAAAACGGGTCCTA+TGG | + | chr1_2:67804781-67804800 | None:intergenic | 35.0% | |
| ! | GTGTATAATGGTTTCTAGAC+AGG | - | chr1_2:67804989-67805008 | Msa0087010:CDS | 35.0% |
| GATGAAGTTCGTATTCGTGA+TGG | - | chr1_2:67803367-67803386 | Msa0087010:intron | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | - | chr1_2:67803423-67803442 | Msa0087010:intron | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | + | chr1_2:67803466-67803485 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | + | chr1_2:67803467-67803486 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | + | chr1_2:67803535-67803554 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | - | chr1_2:67803554-67803573 | Msa0087010:intron | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | - | chr1_2:67803555-67803574 | Msa0087010:intron | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | - | chr1_2:67803595-67803614 | Msa0087010:intron | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | + | chr1_2:67803608-67803627 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | - | chr1_2:67803606-67803625 | Msa0087010:intron | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | + | chr1_2:67803652-67803671 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | - | chr1_2:67803823-67803842 | Msa0087010:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | - | chr1_2:67804510-67804529 | Msa0087010:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | + | chr1_2:67804529-67804548 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | - | chr1_2:67804527-67804546 | Msa0087010:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | - | chr1_2:67805005-67805024 | Msa0087010:CDS | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | - | chr1_2:67805025-67805044 | Msa0087010:CDS | 40.0% | |
| GATGAAGTTCGTATTCGTGA+TGG | - | chr1_2:67803367-67803386 | Msa0087010:intron | 40.0% | |
| ! | AGATTGGCTAGATGTTGAAC+TGG | - | chr1_2:67803423-67803442 | Msa0087010:intron | 40.0% |
| ! | TGGCTCCTAGTGTTGAATAA+GGG | + | chr1_2:67803466-67803485 | None:intergenic | 40.0% |
| ! | TTGGCTCCTAGTGTTGAATA+AGG | + | chr1_2:67803467-67803486 | None:intergenic | 40.0% |
| ! | CCCTTTCCAGTAGATTTTGA+TGG | + | chr1_2:67803535-67803554 | None:intergenic | 40.0% |
| GAAAGGGAAAGGGAAATCAA+GGG | - | chr1_2:67803554-67803573 | Msa0087010:intron | 40.0% | |
| AAAGGGAAAGGGAAATCAAG+GGG | - | chr1_2:67803555-67803574 | Msa0087010:intron | 40.0% | |
| GAGAAAGTTTCCAAGGGAAA+AGG | - | chr1_2:67803595-67803614 | Msa0087010:intron | 40.0% | |
| ! | CACTTTCTTTCCTTTTCCCT+TGG | + | chr1_2:67803608-67803627 | None:intergenic | 40.0% |
| CAAGGGAAAAGGAAAGAAAG+TGG | - | chr1_2:67803606-67803625 | Msa0087010:intron | 40.0% | |
| CCCCAATCAGTAATAAACTC+TGG | + | chr1_2:67803652-67803671 | None:intergenic | 40.0% | |
| !! | CTTTAGGCTTTAGAGGCTTA+AGG | - | chr1_2:67803823-67803842 | Msa0087010:intron | 40.0% |
| !! | TAAAGCAATGGATTGTCCAC+TGG | - | chr1_2:67804510-67804529 | Msa0087010:intron | 40.0% |
| CAACAAGATCATTTAGCCAG+TGG | + | chr1_2:67804529-67804548 | None:intergenic | 40.0% | |
| ! | CACTGGCTAAATGATCTTGT+TGG | - | chr1_2:67804527-67804546 | Msa0087010:intron | 40.0% |
| ! | AGACAGGAGTCTAGAATAGT+TGG | - | chr1_2:67805005-67805024 | Msa0087010:CDS | 40.0% |
| TGGATCGATTGTTAAGCACA+AGG | - | chr1_2:67805025-67805044 | Msa0087010:CDS | 40.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | + | chr1_2:67803461-67803480 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | + | chr1_2:67803526-67803545 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | - | chr1_2:67803526-67803545 | Msa0087010:intron | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | - | chr1_2:67803543-67803562 | Msa0087010:intron | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | - | chr1_2:67803544-67803563 | Msa0087010:intron | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | - | chr1_2:67803553-67803572 | Msa0087010:intron | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | - | chr1_2:67803561-67803580 | Msa0087010:intron | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | - | chr1_2:67803562-67803581 | Msa0087010:intron | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | - | chr1_2:67803589-67803608 | Msa0087010:intron | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | - | chr1_2:67803666-67803685 | Msa0087010:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | - | chr1_2:67803730-67803749 | Msa0087010:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | - | chr1_2:67803736-67803755 | Msa0087010:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | + | chr1_2:67804102-67804121 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | - | chr1_2:67804543-67804562 | Msa0087010:intron | 45.0% | |
| ! | CCTAGTGTTGAATAAGGGCT+CGG | + | chr1_2:67803461-67803480 | None:intergenic | 45.0% |
| !! | GTAGATTTTGATGGAGCTGC+AGG | + | chr1_2:67803526-67803545 | None:intergenic | 45.0% |
| GCAGCTCCATCAAAATCTAC+TGG | - | chr1_2:67803526-67803545 | Msa0087010:intron | 45.0% | |
| TACTGGAAAGGGAAAGGGAA+AGG | - | chr1_2:67803543-67803562 | Msa0087010:intron | 45.0% | |
| ACTGGAAAGGGAAAGGGAAA+GGG | - | chr1_2:67803544-67803563 | Msa0087010:intron | 45.0% | |
| GGAAAGGGAAAGGGAAATCA+AGG | - | chr1_2:67803553-67803572 | Msa0087010:intron | 45.0% | |
| AAAGGGAAATCAAGGGGCAA+AGG | - | chr1_2:67803561-67803580 | Msa0087010:intron | 45.0% | |
| AAGGGAAATCAAGGGGCAAA+GGG | - | chr1_2:67803562-67803581 | Msa0087010:intron | 45.0% | |
| CAAGGGGAGAAAGTTTCCAA+GGG | - | chr1_2:67803589-67803608 | Msa0087010:intron | 45.0% | |
| TTGGGGGGATGAAGAAAAAG+AGG | - | chr1_2:67803666-67803685 | Msa0087010:intron | 45.0% | |
| !! | CACATGAATGATGGTGGAAG+TGG | - | chr1_2:67803730-67803749 | Msa0087010:intron | 45.0% |
| !! | AATGATGGTGGAAGTGGAAG+TGG | - | chr1_2:67803736-67803755 | Msa0087010:intron | 45.0% |
| CAAGAGCTCTGTTGTCAAAG+CGG | + | chr1_2:67804102-67804121 | None:intergenic | 45.0% | |
| TTGTTGGGCAGCATATGTGT+TGG | - | chr1_2:67804543-67804562 | Msa0087010:intron | 45.0% | |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | + | chr1_2:67804937-67804956 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAAATTTAAAGAT+TGG | + | chr1_2:67804937-67804956 | None:intergenic | 5.0% |
| CTAGATGTTGAACTGGCGAG+TGG | - | chr1_2:67803430-67803449 | Msa0087010:intron | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | - | chr1_2:67803458-67803477 | Msa0087010:intron | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | - | chr1_2:67803480-67803499 | Msa0087010:intron | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | + | chr1_2:67803486-67803505 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | - | chr1_2:67803572-67803591 | Msa0087010:intron | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | - | chr1_2:67803588-67803607 | Msa0087010:intron | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | - | chr1_2:67803721-67803740 | Msa0087010:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | - | chr1_2:67803724-67803743 | Msa0087010:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | - | chr1_2:67804054-67804073 | Msa0087010:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | - | chr1_2:67804055-67804074 | Msa0087010:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | + | chr1_2:67804059-67804078 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | + | chr1_2:67804064-67804083 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | + | chr1_2:67804094-67804113 | None:intergenic | 50.0% | |
| CTAGATGTTGAACTGGCGAG+TGG | - | chr1_2:67803430-67803449 | Msa0087010:intron | 50.0% | |
| CCGAGCCCTTATTCAACACT+AGG | - | chr1_2:67803458-67803477 | Msa0087010:intron | 50.0% | |
| GAGCCAAGCAACTTTGCAGA+AGG | - | chr1_2:67803480-67803499 | Msa0087010:intron | 50.0% | |
| CTGCCTTCTGCAAAGTTGCT+TGG | + | chr1_2:67803486-67803505 | None:intergenic | 50.0% | |
| AAGGGGCAAAGGGAAAGCAA+GGG | - | chr1_2:67803572-67803591 | Msa0087010:intron | 50.0% | |
| GCAAGGGGAGAAAGTTTCCA+AGG | - | chr1_2:67803588-67803607 | Msa0087010:intron | 50.0% | |
| GAGGCAGAGCACATGAATGA+TGG | - | chr1_2:67803721-67803740 | Msa0087010:intron | 50.0% | |
| GCAGAGCACATGAATGATGG+TGG | - | chr1_2:67803724-67803743 | Msa0087010:intron | 50.0% | |
| ! | TACCGCGCCACGTCAATTTT+TGG | - | chr1_2:67804054-67804073 | Msa0087010:intron | 50.0% |
| ! | ACCGCGCCACGTCAATTTTT+GGG | - | chr1_2:67804055-67804074 | Msa0087010:intron | 50.0% |
| ACCCAAAAATTGACGTGGCG+CGG | + | chr1_2:67804059-67804078 | None:intergenic | 50.0% | |
| CGACCACCCAAAAATTGACG+TGG | + | chr1_2:67804064-67804083 | None:intergenic | 50.0% | |
| CTGTTGTCAAAGCGGAAACG+CGG | + | chr1_2:67804094-67804113 | None:intergenic | 50.0% | |
| CAAGGGGCAAAGGGAAAGCA+AGG | - | chr1_2:67803571-67803590 | Msa0087010:intron | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | - | chr1_2:67803573-67803592 | Msa0087010:intron | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | + | chr1_2:67804051-67804070 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | + | chr1_2:67804052-67804071 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | - | chr1_2:67804058-67804077 | Msa0087010:intron | 55.0% |
| CAAGGGGCAAAGGGAAAGCA+AGG | - | chr1_2:67803571-67803590 | Msa0087010:intron | 55.0% | |
| AGGGGCAAAGGGAAAGCAAG+GGG | - | chr1_2:67803573-67803592 | Msa0087010:intron | 55.0% | |
| ATTGACGTGGCGCGGTATGA+GGG | + | chr1_2:67804051-67804070 | None:intergenic | 55.0% | |
| AATTGACGTGGCGCGGTATG+AGG | + | chr1_2:67804052-67804071 | None:intergenic | 55.0% | |
| !! | GCGCCACGTCAATTTTTGGG+TGG | - | chr1_2:67804058-67804077 | Msa0087010:intron | 55.0% |
| GTCAAAGCGGAAACGCGGCG+TGG | + | chr1_2:67804089-67804108 | None:intergenic | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+TGG | + | chr1_2:67804089-67804108 | None:intergenic | 65.0% | |
| ! | GCGGTATGAGGGCACGACGC+AGG | + | chr1_2:67804040-67804059 | None:intergenic | 70.0% |
| ! | GCGGTATGAGGGCACGACGC+AGG | + | chr1_2:67804040-67804059 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 67803322 | 67805070 | 67803322 | ID=Msa0087010;Name=Msa0087010 |
| chr1_2 | mRNA | 67803322 | 67805070 | 67803322 | ID=Msa0087010-mRNA-1;Parent=Msa0087010;Name=Msa0087010-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|0.5|1|1|2|0|121 |
| chr1_2 | exon | 67804765 | 67805070 | 67804765 | ID=Msa0087010-mRNA-1:exon:23104;Parent=Msa0087010-mRNA-1 |
| chr1_2 | exon | 67803322 | 67803381 | 67803322 | ID=Msa0087010-mRNA-1:exon:23103;Parent=Msa0087010-mRNA-1 |
| chr1_2 | CDS | 67804765 | 67805070 | 67804765 | ID=Msa0087010-mRNA-1:cds;Parent=Msa0087010-mRNA-1 |
| chr1_2 | CDS | 67803322 | 67803381 | 67803322 | ID=Msa0087010-mRNA-1:cds;Parent=Msa0087010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
