AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0065960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065960 MtrunA17_Chr1g0169671 99.015 203 2 0 1 203 1 203 4.01e-149 412
Msa0065960 MtrunA17_Chr4g0019761 64.925 134 38 3 1 130 1 129 1.50e-47 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0065960 AT4G20280.1 68.800 125 39 0 79 203 86 210 2.73e-62 192
Msa0065960 AT1G20000.1 51.471 204 67 5 1 203 32 204 1.85e-57 180

Find 62 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGTTTCATATTAGCTTTC+TGG 0.049364 1_2:+28818158 None:intergenic
AGAGATGAATTGGTTGAATT+AGG 0.172587 1_2:+28818516 None:intergenic
CAAGTTCTTACAAGCATATT+TGG 0.190986 1_2:-28815842 Msa0065960:three_prime_UTR
ATTCTTGGTGATTGTGTTAT+TGG 0.196949 1_2:+28818437 None:intergenic
AATCAATGTTGGTAGTAAAA+TGG 0.203532 1_2:-28816001 Msa0065960:three_prime_UTR
ATCTTCTTCATCTTTATTCT+TGG 0.203770 1_2:+28818422 None:intergenic
ATTTATGCATAGTACATAAA+AGG 0.212168 1_2:-28815772 None:intergenic
CCAATTACGATTGCAGTATC+AGG 0.212295 1_2:-28816477 Msa0065960:CDS
CCTGATACTGCAATCGTAAT+TGG 0.229693 1_2:+28816477 None:intergenic
GTGATTGTGTTATTGGAGTT+TGG 0.254521 1_2:+28818444 None:intergenic
TCGGTTTCGATTGGAGATTC+TGG 0.259132 1_2:+28818567 None:intergenic
ATCATTGTGCAAGGGTTAAA+AGG 0.270747 1_2:-28815806 Msa0065960:three_prime_UTR
GAGATGAATTGGTTGAATTA+GGG 0.297810 1_2:+28818517 None:intergenic
TGCTGGTGACCCTCATAAAA+TGG 0.315270 1_2:-28818352 Msa0065960:CDS
TGATGAAGAAGAAGATAATA+TGG 0.321458 1_2:-28818400 Msa0065960:CDS
TGATTGTGTTATTGGAGTTT+GGG 0.321471 1_2:+28818445 None:intergenic
CCTCGAGGCTCTTTCGATAA+TGG 0.321964 1_2:-28816131 Msa0065960:exon
CAGTTATTGGCAAGCATCAC+TGG 0.325154 1_2:-28816519 Msa0065960:CDS
ATTCACTCATTCCTGTTGAT+TGG 0.353615 1_2:+28816021 None:intergenic
CTCAGATGACAGGGCCGAAT+TGG 0.356800 1_2:+28816204 None:intergenic
ATCAATGTTGGTAGTAAAAT+GGG 0.360628 1_2:-28816000 Msa0065960:three_prime_UTR
ATGAAAGAGAGGAAGGAAAC+TGG 0.371797 1_2:-28816228 Msa0065960:CDS
GTGGGTGAAGTTGTGGAAAC+AGG 0.382133 1_2:-28816438 Msa0065960:intron
TCAGTGGATGCATCTGGGTC+TGG 0.383613 1_2:+28818543 None:intergenic
GTCCAGCTCTTCCAATCAAC+AGG 0.412491 1_2:-28816032 Msa0065960:three_prime_UTR
GATTGGAAGAGCTGGACATT+TGG 0.413664 1_2:+28816038 None:intergenic
GGATTGTGGAAGAGATGAAT+TGG 0.441716 1_2:+28818506 None:intergenic
GGATGCATCTGGGTCTGGTT+CGG 0.445353 1_2:+28818548 None:intergenic
ATGTGCTTCTCTCAGATGAC+AGG 0.458430 1_2:+28816194 None:intergenic
TCCAGAAAGCTAATATGAAA+CGG 0.459070 1_2:-28818159 Msa0065960:CDS
TTCCTGTTGATTGGAAGAGC+TGG 0.463030 1_2:+28816030 None:intergenic
TATGAGTCATTTCGTAGAGC+TGG 0.466823 1_2:-28818184 Msa0065960:CDS
TCTTCGAATGCTGCTTCGAA+TGG 0.472886 1_2:+28818597 None:intergenic
CATAGACGACTAAAGCTTGA+AGG 0.473602 1_2:-28816174 Msa0065960:CDS
TTTATGCATAGTACATAAAA+GGG 0.476084 1_2:-28815771 None:intergenic
CCAGAAAGCTAATATGAAAC+GGG 0.477611 1_2:-28818158 Msa0065960:intron
GGGTCTGGTTCGGTTTCGAT+TGG 0.479555 1_2:+28818558 None:intergenic
GGAAGGAAACTGGACCAATT+CGG 0.484795 1_2:-28816218 Msa0065960:CDS
CTTGCTAAGTTTCCTACTGC+TGG 0.491386 1_2:-28818369 Msa0065960:CDS
TGCAACGGTGGCATGCAGGC+AGG 0.492346 1_2:-28816074 Msa0065960:three_prime_UTR
AACAATTATGAAAGAGAGGA+AGG 0.500999 1_2:-28816235 Msa0065960:CDS
CAATTACGATTGCAGTATCA+GGG 0.504962 1_2:-28816476 Msa0065960:CDS
GGCTTGCAACGGTGGCATGC+AGG 0.508178 1_2:-28816078 Msa0065960:three_prime_UTR
AGGGATTGCGAAAGTGTTTG+TGG 0.510161 1_2:-28816457 Msa0065960:CDS
TTCTTCTTCATGAGTGAGAG+TGG 0.513530 1_2:+28818485 None:intergenic
CTAGAACAATTATGAAAGAG+AGG 0.568793 1_2:-28816239 Msa0065960:CDS
TTAGAATAGATCATTGTGCA+AGG 0.569919 1_2:-28815815 Msa0065960:three_prime_UTR
GAAGAGAATGAAGCAATCAA+AGG 0.578499 1_2:-28818622 Msa0065960:intron
GGGATTGCGAAAGTGTTTGT+GGG 0.579315 1_2:-28816456 Msa0065960:CDS
AGGAATGAGTGAATCAATGT+TGG 0.580613 1_2:-28816012 Msa0065960:three_prime_UTR
ATATGATTGGCTTGCAACGG+TGG 0.585134 1_2:-28816086 Msa0065960:three_prime_UTR
AGTGTTTGTGGGTGAAGTTG+TGG 0.586275 1_2:-28816445 Msa0065960:CDS
TAGAATAGATCATTGTGCAA+GGG 0.595572 1_2:-28815814 Msa0065960:three_prime_UTR
TTATGAGGGTCACCAGCAGT+AGG 0.599687 1_2:+28818357 None:intergenic
GTTTCGATTGGAGATTCTGG+TGG 0.607774 1_2:+28818570 None:intergenic
AGTTATTGGCAAGCATCACT+GGG 0.610992 1_2:-28816518 Msa0065960:CDS
GATTGTGTTATTGGAGTTTG+GGG 0.619765 1_2:+28818446 None:intergenic
TCATGAGTGAGAGTGGATTG+TGG 0.620736 1_2:+28818492 None:intergenic
ATCATATGATTGGCTTGCAA+CGG 0.624174 1_2:-28816089 Msa0065960:three_prime_UTR
TGTGCTTCTCTCAGATGACA+GGG 0.664896 1_2:+28816195 None:intergenic
CCATTATCGAAAGAGCCTCG+AGG 0.733132 1_2:+28816131 None:intergenic
TCTTTAAGAGAACAACCTCG+AGG 0.744964 1_2:-28816146 Msa0065960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACATAAAAACAAAATTA+GGG + chr1_2:28819100-28819119 None:intergenic 10.0%
!! AAATACATAAAAACAAAATT+AGG + chr1_2:28819101-28819120 None:intergenic 10.0%
!! CTAATTCTTATTATATTAAA+CGG + chr1_2:28820979-28820998 None:intergenic 10.0%
!! ATTTATATGAATTAATCAAC+TGG - chr1_2:28816479-28816498 Msa0065960:CDS 15.0%
!!! AAGTTGATAGTATTAATAAA+GGG + chr1_2:28817546-28817565 None:intergenic 15.0%
!!! TTTTAGTAGAAAATAAGTTA+TGG - chr1_2:28818093-28818112 Msa0065960:intron 15.0%
!!! TTATGTATTTGTTGATTTTT+AGG - chr1_2:28819111-28819130 Msa0065960:intron 15.0%
!!! TATGTATTTGTTGATTTTTA+GGG - chr1_2:28819112-28819131 Msa0065960:intron 15.0%
!! ACAAAAAATTAAGAAAACAA+AGG + chr1_2:28819403-28819422 None:intergenic 15.0%
!!! TTTTCTTAATTTTTTGTATG+AGG - chr1_2:28819406-28819425 Msa0065960:intron 15.0%
!!! TTTTAAATGAACATGATATA+GGG - chr1_2:28819900-28819919 Msa0065960:intron 15.0%
!! CAAAAAAAAAAAAAAAACGT+TGG + chr1_2:28820030-28820049 None:intergenic 15.0%
!! TATTTATAAACAACTACAAT+TGG - chr1_2:28820506-28820525 Msa0065960:intron 15.0%
!! AATTATTCAATATTTCTCAG+TGG + chr1_2:28816204-28816223 None:intergenic 20.0%
!! TATAATTGTAAGCCAATTTA+TGG + chr1_2:28816640-28816659 None:intergenic 20.0%
!! ATTTATTTAGAAGTAGAAGT+AGG - chr1_2:28816677-28816696 Msa0065960:intron 20.0%
!!! GGATTCATTTATTTTTTATC+CGG - chr1_2:28816731-28816750 Msa0065960:intron 20.0%
!!! AGAGTAATTGCATTTTTATT+TGG + chr1_2:28817503-28817522 None:intergenic 20.0%
!!! CAAGTTGATAGTATTAATAA+AGG + chr1_2:28817547-28817566 None:intergenic 20.0%
!! TTAATACTATCAACTTGTAT+TGG - chr1_2:28817550-28817569 Msa0065960:intron 20.0%
!! AAAATAGAAAATGATCACTT+TGG - chr1_2:28817817-28817836 Msa0065960:intron 20.0%
!! ATATAGAGATTTAGGAATTT+GGG + chr1_2:28817879-28817898 None:intergenic 20.0%
!!! AATTGATTTTGAACAAAAGA+GGG + chr1_2:28817913-28817932 None:intergenic 20.0%
!!! AAATTGATTTTGAACAAAAG+AGG + chr1_2:28817914-28817933 None:intergenic 20.0%
!!! TATTATACTTTTTGGAATTG+AGG + chr1_2:28818004-28818023 None:intergenic 20.0%
!! TGTTTAGTTAAAACAAAGTT+TGG - chr1_2:28818117-28818136 Msa0065960:intron 20.0%
!! ATTTAGAGATTTAAGGATTT+GGG - chr1_2:28818317-28818336 Msa0065960:intron 20.0%
!!! AATTTAGGGATATTGATTTT+CGG - chr1_2:28818352-28818371 Msa0065960:CDS 20.0%
!!! TCTTTGAAAATAGTTTTTCT+AGG + chr1_2:28819642-28819661 None:intergenic 20.0%
!!! ATTTGAGTTGTTAATTAAAG+AGG - chr1_2:28819875-28819894 Msa0065960:intron 20.0%
!!! GTTTTAAATGAACATGATAT+AGG - chr1_2:28819899-28819918 Msa0065960:intron 20.0%
!!! TTTTTGACAAATAAAACCAA+CGG - chr1_2:28820044-28820063 Msa0065960:intron 20.0%
!! TTTATTTAAATAACAACCGT+TGG + chr1_2:28820063-28820082 None:intergenic 20.0%
!! TATACAAAAAGTAGAAAACA+CGG + chr1_2:28820198-28820217 None:intergenic 20.0%
!!! CTTTTTAATTTTTTGATGCT+AGG - chr1_2:28820307-28820326 Msa0065960:intron 20.0%
!! TAAGAATTAGAAAAATGTGA+AGG - chr1_2:28820989-28821008 Msa0065960:intron 20.0%
!!! ACATTTTATTGTGTAGTAAT+GGG + chr1_2:28821390-28821409 None:intergenic 20.0%
! TGACAAGAACATAACTTTAA+AGG - chr1_2:28815805-28815824 Msa0065960:three_prime_UTR 25.0%
! TATAAAATGCCGAAATTCTT+AGG + chr1_2:28816432-28816451 None:intergenic 25.0%
! AAATAATTCCCAAACTAAGT+TGG + chr1_2:28817289-28817308 None:intergenic 25.0%
! TTGTATTGAATCCTAAGTTT+GGG + chr1_2:28817695-28817714 None:intergenic 25.0%
! TTTGTATTGAATCCTAAGTT+TGG + chr1_2:28817696-28817715 None:intergenic 25.0%
!!! AATTTGGGGATATTAGTTTT+CGG + chr1_2:28817851-28817870 None:intergenic 25.0%
! TATAGAGATTTAGGAATTTG+GGG + chr1_2:28817878-28817897 None:intergenic 25.0%
! GATATAGAGATTTAGGAATT+TGG + chr1_2:28817880-28817899 None:intergenic 25.0%
! TAGATGAGATATAGAGATTT+AGG + chr1_2:28817887-28817906 None:intergenic 25.0%
!! GAGGGAAATATTATACTTTT+TGG + chr1_2:28818012-28818031 None:intergenic 25.0%
! ATAGTATGTCTTATGTCAAA+TGG + chr1_2:28818145-28818164 None:intergenic 25.0%
! AGATGAGATTTAGAGATTTA+AGG - chr1_2:28818310-28818329 Msa0065960:intron 25.0%
! GATTTAGAGATTTAAGGATT+TGG - chr1_2:28818316-28818335 Msa0065960:intron 25.0%
! TTTAGAGATTTAAGGATTTG+GGG - chr1_2:28818318-28818337 Msa0065960:intron 25.0%
! ACTAAGATGAAAGTAGAAAA+TGG + chr1_2:28818395-28818414 None:intergenic 25.0%
! AAAACTTCTGTTAAATGATG+AGG + chr1_2:28818442-28818461 None:intergenic 25.0%
! GATTGATTATACTGTAGAAT+TGG + chr1_2:28818698-28818717 None:intergenic 25.0%
!! ACAGTATAATCAATCAGTTT+TGG - chr1_2:28818703-28818722 Msa0065960:intron 25.0%
! ATCTTCTTCATCTTTATTCT+TGG + chr1_2:28818938-28818957 None:intergenic 25.0%
! TGATGAAGAAGAAGATAATA+TGG - chr1_2:28818957-28818976 Msa0065960:intron 25.0%
! TGATCTTGTGTATATGTTAA+TGG - chr1_2:28819273-28819292 Msa0065960:intron 25.0%
! ATGACAATATTATAGAGATG+AGG - chr1_2:28819475-28819494 Msa0065960:intron 25.0%
! TAGTGTTAACTTATGGATAT+AGG - chr1_2:28819779-28819798 Msa0065960:intron 25.0%
! AGTGTTAACTTATGGATATA+GGG - chr1_2:28819780-28819799 Msa0065960:intron 25.0%
!!! TAAAAGATCAGGATTAGTTA+TGG - chr1_2:28819821-28819840 Msa0065960:intron 25.0%
!!! GTGTTTTCTACTTTTTGTAT+AGG - chr1_2:28820197-28820216 Msa0065960:intron 25.0%
!!! CTACTTTTTGTATAGGTAAT+TGG - chr1_2:28820204-28820223 Msa0065960:intron 25.0%
!!! CTTTGTTTGTTTGTTATTCT+GGG + chr1_2:28820264-28820283 None:intergenic 25.0%
!!! TAATTTTTTGATGCTAGGTT+AGG - chr1_2:28820312-28820331 Msa0065960:intron 25.0%
! CCATTCTTAAATGATATACA+AGG + chr1_2:28820655-28820674 None:intergenic 25.0%
! CCTTGTATATCATTTAAGAA+TGG - chr1_2:28820652-28820671 Msa0065960:intron 25.0%
!! AATGGACCAAATATGATTTT+TGG - chr1_2:28821244-28821263 Msa0065960:intron 25.0%
!! ATGGACCAAATATGATTTTT+GGG - chr1_2:28821245-28821264 Msa0065960:intron 25.0%
! ATGATCCCAAAAATCATATT+TGG + chr1_2:28821253-28821272 None:intergenic 25.0%
!!! AATCAATGTTGGTAGTAAAA+TGG - chr1_2:28821356-28821375 Msa0065960:intron 25.0%
!!! ATCAATGTTGGTAGTAAAAT+GGG - chr1_2:28821357-28821376 Msa0065960:intron 25.0%
!! CACATTTTATTGTGTAGTAA+TGG + chr1_2:28821391-28821410 None:intergenic 25.0%
TTGAAACTCACACACATTAA+TGG - chr1_2:28816370-28816389 Msa0065960:intron 30.0%
TCATATTCTGTATGAGAATG+TGG + chr1_2:28816599-28816618 None:intergenic 30.0%
ATTGTAAGCCAATTTATGGT+AGG + chr1_2:28816636-28816655 None:intergenic 30.0%
TGTTTAACATATTCTAGCAG+TGG - chr1_2:28816707-28816726 Msa0065960:intron 30.0%
!!! TCATTTATTTTTTATCCGGC+TGG - chr1_2:28816735-28816754 Msa0065960:intron 30.0%
AAAACGTACCAACTTAGTTT+GGG - chr1_2:28817278-28817297 Msa0065960:intron 30.0%
!! CAAATTTGTTGTAATGTCAG+CGG - chr1_2:28817419-28817438 Msa0065960:intron 30.0%
AGCGGATATATTACAATTGT+TGG - chr1_2:28817437-28817456 Msa0065960:intron 30.0%
TTCCTTCCATAAACATTGTT+TGG - chr1_2:28817660-28817679 Msa0065960:intron 30.0%
TGGAATTGAGGAGTAAAATA+TGG + chr1_2:28817992-28818011 None:intergenic 30.0%
! GGAGTTTAGTTTATATGGTA+TGG + chr1_2:28818181-28818200 None:intergenic 30.0%
! TCACTGGAGTTTAGTTTATA+TGG + chr1_2:28818186-28818205 None:intergenic 30.0%
GGTTAACAACAGCAAAAAAA+AGG - chr1_2:28818260-28818279 Msa0065960:intron 30.0%
! GGGATCTAAGATTCAATTTA+GGG - chr1_2:28818338-28818357 Msa0065960:intron 30.0%
ATAACAGAAATGCACATTCA+GGG - chr1_2:28818482-28818501 Msa0065960:CDS 30.0%
GAGATGAATTGGTTGAATTA+GGG + chr1_2:28818843-28818862 None:intergenic 30.0%
AGAGATGAATTGGTTGAATT+AGG + chr1_2:28818844-28818863 None:intergenic 30.0%
! TGATTGTGTTATTGGAGTTT+GGG + chr1_2:28818915-28818934 None:intergenic 30.0%
! ATTCTTGGTGATTGTGTTAT+TGG + chr1_2:28818923-28818942 None:intergenic 30.0%
TCCAGAAAGCTAATATGAAA+CGG - chr1_2:28819198-28819217 Msa0065960:intron 30.0%
!! CTTTTGATTGAAAGTGTGTT+TGG - chr1_2:28819323-28819342 Msa0065960:intron 30.0%
!!! TTGGTGTTTTGACATATTGT+TGG - chr1_2:28819342-28819361 Msa0065960:intron 30.0%
!!! TGTTTTGACATATTGTTGGT+GGG - chr1_2:28819346-28819365 Msa0065960:intron 30.0%
CAATATTATAGAGATGAGGT+AGG - chr1_2:28819479-28819498 Msa0065960:intron 30.0%
ACTAAGAAGAGTAAATCAGA+TGG - chr1_2:28819584-28819603 Msa0065960:intron 30.0%
GAGAGTAGTCAAATCATTAA+AGG - chr1_2:28819606-28819625 Msa0065960:intron 30.0%
AGTCAAATCATTAAAGGCAA+AGG - chr1_2:28819612-28819631 Msa0065960:intron 30.0%
CGATGAGTTAGATAGAAATA+TGG - chr1_2:28819671-28819690 Msa0065960:intron 30.0%
! TGGTATATGATAGAGCATTA+TGG - chr1_2:28819691-28819710 Msa0065960:intron 30.0%
TGCTTCATAGTGTTAACTTA+TGG - chr1_2:28819772-28819791 Msa0065960:intron 30.0%
AGAATTGGAGTTAAAAGATC+AGG - chr1_2:28819810-28819829 Msa0065960:intron 30.0%
GGAATTAACAGATGTCTTTA+AGG - chr1_2:28819950-28819969 Msa0065960:intron 30.0%
!! AAACTCGTGTTTTGTTATGA+TGG - chr1_2:28820080-28820099 Msa0065960:intron 30.0%
!! AACTCGTGTTTTGTTATGAT+GGG - chr1_2:28820081-28820100 Msa0065960:intron 30.0%
! ATTCTGGGAAGAATTTAGAA+TGG + chr1_2:28820249-28820268 None:intergenic 30.0%
!! GCTTTGTTTGTTTGTTATTC+TGG + chr1_2:28820265-28820284 None:intergenic 30.0%
CAAAGCTCAATTAATGTTGA+AGG + chr1_2:28820350-28820369 None:intergenic 30.0%
CTTCAACATTAATTGAGCTT+TGG - chr1_2:28820348-28820367 Msa0065960:intron 30.0%
! TCTTTTATCCCAAACTGATT+AGG - chr1_2:28820381-28820400 Msa0065960:intron 30.0%
! CTTTTATCCCAAACTGATTA+GGG - chr1_2:28820382-28820401 Msa0065960:intron 30.0%
! AACTTTTCCCTAATCAGTTT+GGG + chr1_2:28820392-28820411 None:intergenic 30.0%
! TAACTTTTCCCTAATCAGTT+TGG + chr1_2:28820393-28820412 None:intergenic 30.0%
ATAAACAACTACAATTGGCT+TGG - chr1_2:28820511-28820530 Msa0065960:intron 30.0%
! AATTGGAATCGAGATTTTCT+GGG + chr1_2:28820866-28820885 None:intergenic 30.0%
! TAATTGGAATCGAGATTTTC+TGG + chr1_2:28820867-28820886 None:intergenic 30.0%
GTACTGTTTCCATTAATCAA+AGG - chr1_2:28821079-28821098 Msa0065960:intron 30.0%
! GATAGAGTACCTTTGATTAA+TGG + chr1_2:28821091-28821110 None:intergenic 30.0%
CTAGAACAATTATGAAAGAG+AGG - chr1_2:28821118-28821137 Msa0065960:intron 30.0%
AACAATTATGAAAGAGAGGA+AGG - chr1_2:28821122-28821141 Msa0065960:intron 30.0%
!!! GATTTTTGGGATCATATGAT+TGG - chr1_2:28821258-28821277 Msa0065960:intron 30.0%
CAAGTTCTTACAAGCATATT+TGG - chr1_2:28821515-28821534 Msa0065960:intron 30.0%
TTAGAATAGATCATTGTGCA+AGG - chr1_2:28821542-28821561 Msa0065960:intron 30.0%
TAGAATAGATCATTGTGCAA+GGG - chr1_2:28821543-28821562 Msa0065960:intron 30.0%
AACTGACATATGGAAGTTGT+TGG + chr1_2:28815972-28815991 None:intergenic 35.0%
TTTCACACATCTCAATCCAT+GGG - chr1_2:28816029-28816048 Msa0065960:three_prime_UTR 35.0%
GAAAAGATCTTCCAAGATCA+AGG - chr1_2:28816070-28816089 Msa0065960:three_prime_UTR 35.0%
AACTCACACACATTAATGGA+TGG - chr1_2:28816374-28816393 Msa0065960:intron 35.0%
! CATTTTATACCAGTTGAGCT+AGG - chr1_2:28816443-28816462 Msa0065960:CDS 35.0%
TGGTATTATATGTTCCAGCT+GGG - chr1_2:28816499-28816518 Msa0065960:CDS 35.0%
CTAAACCTTGTGATTACTTG+TGG + chr1_2:28816557-28816576 None:intergenic 35.0%
CTGTCATACCTACCATAAAT+TGG - chr1_2:28816625-28816644 Msa0065960:intron 35.0%
TTAACATATTCTAGCAGTGG+CGG - chr1_2:28816710-28816729 Msa0065960:intron 35.0%
TTGGATGAAATCTGTTGTGT+TGG - chr1_2:28816776-28816795 Msa0065960:intron 35.0%
! ACTGTAATCCAGTAGGTTTT+AGG - chr1_2:28817025-28817044 Msa0065960:intron 35.0%
CTTCGTAGTGAAAATTGTTC+CGG + chr1_2:28817129-28817148 None:intergenic 35.0%
AAGAAGCAGAGTGTAATGAA+AGG + chr1_2:28817256-28817275 None:intergenic 35.0%
!!! CAAACTAAGTTGGTACGTTT+TGG + chr1_2:28817279-28817298 None:intergenic 35.0%
CAAAACGTACCAACTTAGTT+TGG - chr1_2:28817277-28817296 Msa0065960:intron 35.0%
TGTATCACAAGAATGTCAAG+TGG - chr1_2:28817323-28817342 Msa0065960:intron 35.0%
GTATCACAAGAATGTCAAGT+GGG - chr1_2:28817324-28817343 Msa0065960:intron 35.0%
GTCTCAAGTTCACTCAAAAA+TGG - chr1_2:28817584-28817603 Msa0065960:intron 35.0%
! AATTGTGCTTGATGACTATG+AGG + chr1_2:28817642-28817661 None:intergenic 35.0%
CTCCAAACAATGTTTATGGA+AGG + chr1_2:28817665-28817684 None:intergenic 35.0%
! TTGAATCCTAAGTTTGGGTT+TGG + chr1_2:28817690-28817709 None:intergenic 35.0%
GTCAGAGACTAAACTGATAA+CGG + chr1_2:28817740-28817759 None:intergenic 35.0%
! GAGGTGTCACAAATACTAAA+AGG - chr1_2:28817794-28817813 Msa0065960:intron 35.0%
GAATTTGGGGATTCAATTTG+GGG + chr1_2:28817865-28817884 None:intergenic 35.0%
GGAATTTGGGGATTCAATTT+GGG + chr1_2:28817866-28817885 None:intergenic 35.0%
AGGAATTTGGGGATTCAATT+TGG + chr1_2:28817867-28817886 None:intergenic 35.0%
GCACTTACACTATAGAATGA+GGG + chr1_2:28818030-28818049 None:intergenic 35.0%
TGCACTTACACTATAGAATG+AGG + chr1_2:28818031-28818050 None:intergenic 35.0%
! CAAACTTTTTGTGTTGTCAC+TGG + chr1_2:28818202-28818221 None:intergenic 35.0%
!!! TTTTTGCTGTTGTTAACCAG+TGG + chr1_2:28818258-28818277 None:intergenic 35.0%
! GGGGATCTAAGATTCAATTT+AGG - chr1_2:28818337-28818356 Msa0065960:intron 35.0%
!!! GGATATTGATTTTCGGTTCA+GGG - chr1_2:28818359-28818378 Msa0065960:CDS 35.0%
ACTTCTGTTAAATGATGAGG+TGG + chr1_2:28818439-28818458 None:intergenic 35.0%
GATAACAGAAATGCACATTC+AGG - chr1_2:28818481-28818500 Msa0065960:CDS 35.0%
GAAGAGAATGAAGCAATCAA+AGG - chr1_2:28818735-28818754 Msa0065960:intron 35.0%
! GATTGTGTTATTGGAGTTTG+GGG + chr1_2:28818914-28818933 None:intergenic 35.0%
! GTGATTGTGTTATTGGAGTT+TGG + chr1_2:28818916-28818935 None:intergenic 35.0%
!! GCATCTTAGCCATTTTATGA+GGG + chr1_2:28819017-28819036 None:intergenic 35.0%
!! TGCATCTTAGCCATTTTATG+AGG + chr1_2:28819018-28819037 None:intergenic 35.0%
CCAGAAAGCTAATATGAAAC+GGG - chr1_2:28819199-28819218 Msa0065960:intron 35.0%
!!! GTGTTTTGACATATTGTTGG+TGG - chr1_2:28819345-28819364 Msa0065960:intron 35.0%
TTTGTATGAGGATGTTGTGT+TGG - chr1_2:28819418-28819437 Msa0065960:intron 35.0%
AGGACCTATAGTAGAAAAGA+TGG - chr1_2:28819499-28819518 Msa0065960:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr1_2:28819502-28819521 Msa0065960:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr1_2:28819506-28819525 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG - chr1_2:28819510-28819529 Msa0065960:intron 35.0%
TGATCCCATTTAGTGAGATA+AGG - chr1_2:28819721-28819740 Msa0065960:intron 35.0%
! CAAGCCTTATCTCACTAAAT+GGG + chr1_2:28819728-28819747 None:intergenic 35.0%
! ACAAGCCTTATCTCACTAAA+TGG + chr1_2:28819729-28819748 None:intergenic 35.0%
TCGTTCTTAGAGGAAACTAA+AGG - chr1_2:28819929-28819948 Msa0065960:intron 35.0%
GAGCTAAATTCAAAACAACC+AGG + chr1_2:28819976-28819995 None:intergenic 35.0%
!!! GGTTTTGGAATAACAGGATA+TGG - chr1_2:28820543-28820562 Msa0065960:intron 35.0%
! TGTATTAGTCTCTCTCTTAC+AGG + chr1_2:28820570-28820589 None:intergenic 35.0%
!! ACTAATACACTGCTTTTCGT+AGG - chr1_2:28820581-28820600 Msa0065960:intron 35.0%
TTAGCTCAGGACAAAAACTA+GGG + chr1_2:28820615-28820634 None:intergenic 35.0%
AATTTGAGTAAGCTTAGCTC+AGG + chr1_2:28820628-28820647 None:intergenic 35.0%
AGAATGGTTTCTGTCATGTT+AGG - chr1_2:28820668-28820687 Msa0065960:intron 35.0%
TGAACTCATGTACTTCTACA+TGG - chr1_2:28820711-28820730 Msa0065960:intron 35.0%
ACAAGTTGTCTCTTCTCTAT+TGG - chr1_2:28820804-28820823 Msa0065960:intron 35.0%
CAATTACGATTGCAGTATCA+GGG - chr1_2:28820881-28820900 Msa0065960:intron 35.0%
! TCATAATTGTTCTAGCTGCA+AGG + chr1_2:28821113-28821132 None:intergenic 35.0%
!! ATCATATGATTGGCTTGCAA+CGG - chr1_2:28821268-28821287 Msa0065960:intron 35.0%
ATTCACTCATTCCTGTTGAT+TGG + chr1_2:28821339-28821358 None:intergenic 35.0%
AGGAATGAGTGAATCAATGT+TGG - chr1_2:28821345-28821364 Msa0065960:intron 35.0%
ATCATTGTGCAAGGGTTAAA+AGG - chr1_2:28821551-28821570 Msa0065960:intron 35.0%
GGTGCATCTGAATTGGATTT+GGG - chr1_2:28815844-28815863 Msa0065960:three_prime_UTR 40.0%
GTGCATCTGAATTGGATTTG+GGG - chr1_2:28815845-28815864 Msa0065960:three_prime_UTR 40.0%
TTTAGCTGAGAGATCAGATG+AGG - chr1_2:28815943-28815962 Msa0065960:three_prime_UTR 40.0%
CAACTTCCATATGTCAGTTG+TGG - chr1_2:28815973-28815992 Msa0065960:three_prime_UTR 40.0%
TCATCTCCACAACTGACATA+TGG + chr1_2:28815982-28816001 None:intergenic 40.0%
CTTTCACACATCTCAATCCA+TGG - chr1_2:28816028-28816047 Msa0065960:three_prime_UTR 40.0%
TATGAGTCATCATCTTCCCA+TGG + chr1_2:28816048-28816067 None:intergenic 40.0%
TGGGAAGATGATGACTCATA+TGG - chr1_2:28816048-28816067 Msa0065960:three_prime_UTR 40.0%
TGAGTTCAACACCTTGATCT+TGG + chr1_2:28816084-28816103 None:intergenic 40.0%
!! AGATCAAGGTGTTGAACTCA+TGG - chr1_2:28816084-28816103 Msa0065960:three_prime_UTR 40.0%
GAACTTCCATATGCTAGTTG+TGG - chr1_2:28816150-28816169 Msa0065960:CDS 40.0%
TCATCTCCACAACTAGCATA+TGG + chr1_2:28816159-28816178 None:intergenic 40.0%
! ACACACATTAATGGATGGAC+CGG - chr1_2:28816379-28816398 Msa0065960:intron 40.0%
AAATGCCGAAATTCTTAGGC+CGG + chr1_2:28816428-28816447 None:intergenic 40.0%
CTGGTATTATATGTTCCAGC+TGG - chr1_2:28816498-28816517 Msa0065960:CDS 40.0%
AACCTTGTGATTACTTGTGG+AGG + chr1_2:28816554-28816573 None:intergenic 40.0%
ATCCAACCAACCATCTTCTT+AGG + chr1_2:28816762-28816781 None:intergenic 40.0%
GATGAAATCTGTTGTGTTGG+AGG - chr1_2:28816779-28816798 Msa0065960:intron 40.0%
AACCTACTGGATTACAGTAC+AGG + chr1_2:28817023-28817042 None:intergenic 40.0%
! TTTTAGGCCGTGTCATCATA+TGG - chr1_2:28817041-28817060 Msa0065960:intron 40.0%
ATATGGTGTAGCCAACTTAG+TGG - chr1_2:28817058-28817077 Msa0065960:intron 40.0%
! CGGAACAATTTTCACTACGA+AGG - chr1_2:28817127-28817146 Msa0065960:intron 40.0%
ACTATGAGGTTGAGCACAAT+GGG + chr1_2:28817628-28817647 None:intergenic 40.0%
GGAGCTCCAAACAATGTTTA+TGG + chr1_2:28817669-28817688 None:intergenic 40.0%
! ATAACGGAAATGCGCATTCA+AGG + chr1_2:28817724-28817743 None:intergenic 40.0%
AAACCTTCTAACTGACGAAG+TGG - chr1_2:28817764-28817783 Msa0065960:intron 40.0%
GTGGAGATTTGTGGTAAGAA+AGG + chr1_2:28818239-28818258 None:intergenic 40.0%
TTCTTACCACAAATCTCCAC+TGG - chr1_2:28818239-28818258 Msa0065960:intron 40.0%
TGTTAACCAGTGGAGATTTG+TGG + chr1_2:28818248-28818267 None:intergenic 40.0%
!!! GGGATATTGATTTTCGGTTC+AGG - chr1_2:28818358-28818377 Msa0065960:CDS 40.0%
! GGTTGAATTAGGGTTTTCAG+TGG + chr1_2:28818833-28818852 None:intergenic 40.0%
GGATTGTGGAAGAGATGAAT+TGG + chr1_2:28818854-28818873 None:intergenic 40.0%
TTCTTCTTCATGAGTGAGAG+TGG + chr1_2:28818875-28818894 None:intergenic 40.0%
TATGAGTCATTTCGTAGAGC+TGG - chr1_2:28819173-28819192 Msa0065960:intron 40.0%
!! CCCGTTTCATATTAGCTTTC+TGG + chr1_2:28819202-28819221 None:intergenic 40.0%
GTGTCAGTGTTATGTCTTGT+CGG + chr1_2:28819377-28819396 None:intergenic 40.0%
GGATGTGTAGTAAGACTAGA+CGG - chr1_2:28819439-28819458 Msa0065960:intron 40.0%
GATGTGTAGTAAGACTAGAC+GGG - chr1_2:28819440-28819459 Msa0065960:intron 40.0%
AACTTATGGATATAGGGCTG+TGG - chr1_2:28819786-28819805 Msa0065960:intron 40.0%
ATATAGGGCTGTGGAAGAAT+TGG - chr1_2:28819795-28819814 Msa0065960:intron 40.0%
! GATTAGTTATGGCTGTTGAG+TGG - chr1_2:28819832-28819851 Msa0065960:intron 40.0%
!! TAACAGATGTCTTTAAGGCC+TGG - chr1_2:28819955-28819974 Msa0065960:intron 40.0%
!! ATGTTCACCATGGAAGTGTT+GGG - chr1_2:28820171-28820190 Msa0065960:intron 40.0%
CTGTTATTCCAAAACCAGAG+AGG + chr1_2:28820539-28820558 None:intergenic 40.0%
!!! CTCTCTGGTTTTGGAATAAC+AGG - chr1_2:28820537-28820556 Msa0065960:intron 40.0%
!! TACACTGCTTTTCGTAGGTT+AGG - chr1_2:28820586-28820605 Msa0065960:intron 40.0%
TAGCTCAGGACAAAAACTAG+GGG + chr1_2:28820614-28820633 None:intergenic 40.0%
CTTAGCTCAGGACAAAAACT+AGG + chr1_2:28820616-28820635 None:intergenic 40.0%
GGTTTCCTGTAACCAGTTAT+TGG - chr1_2:28820825-28820844 Msa0065960:intron 40.0%
AGTTATTGGCAAGCATCACT+GGG - chr1_2:28820839-28820858 Msa0065960:intron 40.0%
CCTGATACTGCAATCGTAAT+TGG + chr1_2:28820883-28820902 None:intergenic 40.0%
CCAATTACGATTGCAGTATC+AGG - chr1_2:28820880-28820899 Msa0065960:intron 40.0%
GAAGCATGTGATGCTTGTAA+AGG + chr1_2:28820957-28820976 None:intergenic 40.0%
CTTAGAAACATGATATGCGC+AGG + chr1_2:28821035-28821054 None:intergenic 40.0%
! CTGCGCATATCATGTTTCTA+AGG - chr1_2:28821033-28821052 Msa0065960:intron 40.0%
ATGAAAGAGAGGAAGGAAAC+TGG - chr1_2:28821129-28821148 Msa0065960:intron 40.0%
CATAGACGACTAAAGCTTGA+AGG - chr1_2:28821183-28821202 Msa0065960:intron 40.0%
! TCTTTAAGAGAACAACCTCG+AGG - chr1_2:28821211-28821230 Msa0065960:intron 40.0%
CGTATGCTTTGATGCACATC+AGG - chr1_2:28815780-28815799 Msa0065960:three_prime_UTR 45.0%
AAAGGAGCTTACATGCCCAA+CGG - chr1_2:28815823-28815842 Msa0065960:three_prime_UTR 45.0%
TCCAATTCAGATGCACCGTT+GGG + chr1_2:28815841-28815860 None:intergenic 45.0%
ATCCAATTCAGATGCACCGT+TGG + chr1_2:28815842-28815861 None:intergenic 45.0%
CGGTGCATCTGAATTGGATT+TGG - chr1_2:28815843-28815862 Msa0065960:three_prime_UTR 45.0%
GCAATACTTGAAGCATGCAG+TGG + chr1_2:28815872-28815891 None:intergenic 45.0%
AGAACCCTATCACAAGCAGT+GGG + chr1_2:28815895-28815914 None:intergenic 45.0%
TAGAACCCTATCACAAGCAG+TGG + chr1_2:28815896-28815915 None:intergenic 45.0%
!! TGGTGTTGACGAAGACTATG+CGG - chr1_2:28816117-28816136 Msa0065960:exon 45.0%
! CACACATTAATGGATGGACC+GGG - chr1_2:28816380-28816399 Msa0065960:intron 45.0%
! ACACATTAATGGATGGACCG+GGG - chr1_2:28816381-28816400 Msa0065960:intron 45.0%
! ATAACAGACTTTTGCCCAGC+TGG + chr1_2:28816516-28816535 None:intergenic 45.0%
TGCCTCCACAAGTAATCACA+AGG - chr1_2:28816549-28816568 Msa0065960:intron 45.0%
GACCTAAGAAGATGGTTGGT+TGG - chr1_2:28816757-28816776 Msa0065960:intron 45.0%
!! TTGGAGGATCGAGCTTTGTT+CGG - chr1_2:28816795-28816814 Msa0065960:intron 45.0%
ACCTAAGACAGACGACTGAA+CGG + chr1_2:28816839-28816858 None:intergenic 45.0%
TGTCTTAGGTTCTTCTCCAC+CGG - chr1_2:28816849-28816868 Msa0065960:intron 45.0%
ATAGATGGCTGGAGAAGTGA+GGG + chr1_2:28816928-28816947 None:intergenic 45.0%
GACCAATGGTGAGGAAATCT+CGG - chr1_2:28816997-28817016 Msa0065960:intron 45.0%
GGCTACACCATATGATGACA+CGG + chr1_2:28817051-28817070 None:intergenic 45.0%
!! TGTAGCCAACTTAGTGGACT+CGG - chr1_2:28817064-28817083 Msa0065960:intron 45.0%
GACCCGAGCTTAATCAGATT+GGG - chr1_2:28817091-28817110 Msa0065960:intron 45.0%
AGGCCCAATCTGATTAAGCT+CGG + chr1_2:28817097-28817116 None:intergenic 45.0%
AGCTTAATCAGATTGGGCCT+TGG - chr1_2:28817097-28817116 Msa0065960:intron 45.0%
GCTTAATCAGATTGGGCCTT+GGG - chr1_2:28817098-28817117 Msa0065960:intron 45.0%
AATTGTTCCGGACTTACCCA+AGG + chr1_2:28817117-28817136 None:intergenic 45.0%
CACAAGAATGTCAAGTGGGT+TGG - chr1_2:28817328-28817347 Msa0065960:intron 45.0%
!! AAGAATGTCAAGTGGGTTGG+AGG - chr1_2:28817331-28817350 Msa0065960:intron 45.0%
CTATGAGGTTGAGCACAATG+GGG + chr1_2:28817627-28817646 None:intergenic 45.0%
GACTATGAGGTTGAGCACAA+TGG + chr1_2:28817629-28817648 None:intergenic 45.0%
GGCATGCATGACTTATCACA+AGG + chr1_2:28818418-28818437 None:intergenic 45.0%
! TCTTCGAATGCTGCTTCGAA+TGG + chr1_2:28818763-28818782 None:intergenic 45.0%
GTTTCGATTGGAGATTCTGG+TGG + chr1_2:28818790-28818809 None:intergenic 45.0%
TCGGTTTCGATTGGAGATTC+TGG + chr1_2:28818793-28818812 None:intergenic 45.0%
! GGTTTTCAGTGGATGCATCT+GGG + chr1_2:28818822-28818841 None:intergenic 45.0%
!! TCATGAGTGAGAGTGGATTG+TGG + chr1_2:28818868-28818887 None:intergenic 45.0%
CTTGCTAAGTTTCCTACTGC+TGG - chr1_2:28818988-28819007 Msa0065960:intron 45.0%
TGCTGGTGACCCTCATAAAA+TGG - chr1_2:28819005-28819024 Msa0065960:intron 45.0%
!! AAGATGGTGGAAACTAGGCT+TGG - chr1_2:28819515-28819534 Msa0065960:intron 45.0%
!! AGATGGTGGAAACTAGGCTT+GGG - chr1_2:28819516-28819535 Msa0065960:intron 45.0%
AAACTAGGCTTGGGTGGTTT+GGG - chr1_2:28819525-28819544 Msa0065960:intron 45.0%
AGGGTCTGAATCGTTCTTAG+AGG - chr1_2:28819919-28819938 Msa0065960:intron 45.0%
CTAACGTGAGATGTTCACCA+TGG - chr1_2:28820161-28820180 Msa0065960:intron 45.0%
! GATGTTCACCATGGAAGTGT+TGG - chr1_2:28820170-28820189 Msa0065960:intron 45.0%
GCTTGCCAATAACTGGTTAC+AGG + chr1_2:28820833-28820852 None:intergenic 45.0%
CAGTGATGCTTGCCAATAAC+TGG + chr1_2:28820840-28820859 None:intergenic 45.0%
CAGTTATTGGCAAGCATCAC+TGG - chr1_2:28820838-28820857 Msa0065960:intron 45.0%
!! AGGGATTGCGAAAGTGTTTG+TGG - chr1_2:28820900-28820919 Msa0065960:intron 45.0%
!! GGGATTGCGAAAGTGTTTGT+GGG - chr1_2:28820901-28820920 Msa0065960:intron 45.0%
AGTGTTTGTGGGTGAAGTTG+TGG - chr1_2:28820912-28820931 Msa0065960:intron 45.0%
GGAAGGAAACTGGACCAATT+CGG - chr1_2:28821139-28821158 Msa0065960:intron 45.0%
TGTGCTTCTCTCAGATGACA+GGG + chr1_2:28821165-28821184 None:intergenic 45.0%
ATGTGCTTCTCTCAGATGAC+AGG + chr1_2:28821166-28821185 None:intergenic 45.0%
!! ATATGATTGGCTTGCAACGG+TGG - chr1_2:28821271-28821290 Msa0065960:intron 45.0%
GATTGGAAGAGCTGGACATT+TGG + chr1_2:28821322-28821341 None:intergenic 45.0%
! TTCCTGTTGATTGGAAGAGC+TGG + chr1_2:28821330-28821349 None:intergenic 45.0%
!!! TTTATCTATATTTATTATTT+TGG + chr1_2:28818602-28818621 None:intergenic 5.0%
ATTGCCCCACTGCTTGTGAT+AGG - chr1_2:28815887-28815906 Msa0065960:three_prime_UTR 50.0%
TTGCCCCACTGCTTGTGATA+GGG - chr1_2:28815888-28815907 Msa0065960:three_prime_UTR 50.0%
GAACCCTATCACAAGCAGTG+GGG + chr1_2:28815894-28815913 None:intergenic 50.0%
GAACTCATGGCTGAGTTGCT+TGG - chr1_2:28816097-28816116 Msa0065960:three_prime_UTR 50.0%
ACCAGTTGAGCTAGGACTTG+TGG - chr1_2:28816451-28816470 Msa0065960:CDS 50.0%
TCCACAAGTCCTAGCTCAAC+TGG + chr1_2:28816455-28816474 None:intergenic 50.0%
ACCATCTTCTTAGGTCCAGC+CGG + chr1_2:28816753-28816772 None:intergenic 50.0%
GCTGGACCTAAGAAGATGGT+TGG - chr1_2:28816753-28816772 Msa0065960:intron 50.0%
TCCGTTCAGTCGTCTGTCTT+AGG - chr1_2:28816835-28816854 Msa0065960:intron 50.0%
TTAGGTTCTTCTCCACCGGA+AGG - chr1_2:28816853-28816872 Msa0065960:intron 50.0%
TAGATGGCTGGAGAAGTGAG+GGG + chr1_2:28816927-28816946 None:intergenic 50.0%
CATAGATGGCTGGAGAAGTG+AGG + chr1_2:28816929-28816948 None:intergenic 50.0%
TTCTCCAGCCATCTATGCCT+GGG - chr1_2:28816932-28816951 Msa0065960:intron 50.0%
GTACGGACATGAGTAACCCT+CGG - chr1_2:28816956-28816975 Msa0065960:intron 50.0%
TACGGACATGAGTAACCCTC+GGG - chr1_2:28816957-28816976 Msa0065960:intron 50.0%
GGCCTGTACTGTAATCCAGT+AGG - chr1_2:28817018-28817037 Msa0065960:intron 50.0%
TGACACGGCCTAAAACCTAC+TGG + chr1_2:28817036-28817055 None:intergenic 50.0%
!! GTAGCCAACTTAGTGGACTC+GGG - chr1_2:28817065-28817084 Msa0065960:intron 50.0%
GGACCCGAGCTTAATCAGAT+TGG - chr1_2:28817090-28817109 Msa0065960:intron 50.0%
GGCCCAATCTGATTAAGCTC+GGG + chr1_2:28817096-28817115 None:intergenic 50.0%
AATGGGGAGTGAACAACGGT+GGG + chr1_2:28817611-28817630 None:intergenic 50.0%
GCACAATGGGGAGTGAACAA+CGG + chr1_2:28817615-28817634 None:intergenic 50.0%
GGAGCTCCAAACCCAAACTT+AGG - chr1_2:28817681-28817700 Msa0065960:intron 50.0%
ACGCCACTTCGTCAGTTAGA+AGG + chr1_2:28817770-28817789 None:intergenic 50.0%
! GGGTTTTCAGTGGATGCATC+TGG + chr1_2:28818823-28818842 None:intergenic 50.0%
TTATGAGGGTCACCAGCAGT+AGG + chr1_2:28819003-28819022 None:intergenic 50.0%
GAAACTAGGCTTGGGTGGTT+TGG - chr1_2:28819524-28819543 Msa0065960:intron 50.0%
ACAATTGCACGTGTCTGTGC+TGG + chr1_2:28820452-28820471 None:intergenic 50.0%
!! CAATTGGCTTGGATCCTCTC+TGG - chr1_2:28820522-28820541 Msa0065960:intron 50.0%
!! GCTTGGATCCTCTCTGGTTT+TGG - chr1_2:28820528-28820547 Msa0065960:intron 50.0%
GTGGGTGAAGTTGTGGAAAC+AGG - chr1_2:28820919-28820938 Msa0065960:intron 50.0%
CCATTATCGAAAGAGCCTCG+AGG + chr1_2:28821229-28821248 None:intergenic 50.0%
CCTCGAGGCTCTTTCGATAA+TGG - chr1_2:28821226-28821245 Msa0065960:intron 50.0%
GTCCAGCTCTTCCAATCAAC+AGG - chr1_2:28821325-28821344 Msa0065960:intron 50.0%
GCCCAACGGTGCATCTGAAT+TGG - chr1_2:28815837-28815856 Msa0065960:three_prime_UTR 55.0%
TGACGAAGACTATGCGGTCG+AGG - chr1_2:28816123-28816142 Msa0065960:exon 55.0%
GGCGTCCGGCCTAAGAATTT+CGG - chr1_2:28816420-28816439 Msa0065960:intron 55.0%
TCCGGCTGGACCTAAGAAGA+TGG - chr1_2:28816749-28816768 Msa0065960:intron 55.0%
TGTTCGGTCTGTCGTGAGCA+TGG - chr1_2:28816811-28816830 Msa0065960:intron 55.0%
CAGGTACACCATCCTCCTTC+CGG + chr1_2:28816871-28816890 None:intergenic 55.0%
CTTCTCCAGCCATCTATGCC+TGG - chr1_2:28816931-28816950 Msa0065960:intron 55.0%
TCTCCAGCCATCTATGCCTG+GGG - chr1_2:28816933-28816952 Msa0065960:intron 55.0%
TTACTCATGTCCGTACCCCC+AGG + chr1_2:28816952-28816971 None:intergenic 55.0%
ACGGACATGAGTAACCCTCG+GGG - chr1_2:28816958-28816977 Msa0065960:intron 55.0%
GGCCGAGATTTCCTCACCAT+TGG + chr1_2:28817002-28817021 None:intergenic 55.0%
!! CCAACTTAGTGGACTCGGGT+CGG - chr1_2:28817069-28817088 Msa0065960:intron 55.0%
GATTGGGCCTTGGGTAAGTC+CGG - chr1_2:28817107-28817126 Msa0065960:intron 55.0%
CAATGGGGAGTGAACAACGG+TGG + chr1_2:28817612-28817631 None:intergenic 55.0%
!! GGGTCTGGTTCGGTTTCGAT+TGG + chr1_2:28818802-28818821 None:intergenic 55.0%
GGATGCATCTGGGTCTGGTT+CGG + chr1_2:28818812-28818831 None:intergenic 55.0%
TCAGTGGATGCATCTGGGTC+TGG + chr1_2:28818817-28818836 None:intergenic 55.0%
TGGTGGAAACTAGGCTTGGG+TGG - chr1_2:28819519-28819538 Msa0065960:intron 55.0%
ACACGGACCCAACACTTCCA+TGG + chr1_2:28820181-28820200 None:intergenic 55.0%
CTCAGATGACAGGGCCGAAT+TGG + chr1_2:28821156-28821175 None:intergenic 55.0%
ATGGACCGGGGTTTGAACCC+CGG - chr1_2:28816393-28816412 Msa0065960:intron 60.0%
CGTTACCGGGGTTCAAACCC+CGG + chr1_2:28816401-28816420 None:intergenic 60.0%
CGGGGTTTGAACCCCGGTAA+CGG - chr1_2:28816399-28816418 Msa0065960:intron 60.0%
GGTTCTTCTCCACCGGAAGG+AGG - chr1_2:28816856-28816875 Msa0065960:intron 60.0%
CTTCTCCACCGGAAGGAGGA+TGG - chr1_2:28816860-28816879 Msa0065960:intron 60.0%
GTACACCATCCTCCTTCCGG+TGG + chr1_2:28816868-28816887 None:intergenic 60.0%
CTCCAGCCATCTATGCCTGG+GGG - chr1_2:28816934-28816953 Msa0065960:intron 60.0%
TACCCCCAGGCATAGATGGC+TGG + chr1_2:28816939-28816958 None:intergenic 60.0%
GCCATCTATGCCTGGGGGTA+CGG - chr1_2:28816939-28816958 Msa0065960:intron 60.0%
TCCGTACCCCCAGGCATAGA+TGG + chr1_2:28816943-28816962 None:intergenic 60.0%
GACATGAGTAACCCTCGGGG+TGG - chr1_2:28816961-28816980 Msa0065960:intron 60.0%
GTGAGGAGCTCTCGGACCAA+TGG - chr1_2:28816983-28817002 Msa0065960:intron 60.0%
GAGCTCTCGGACCAATGGTG+AGG - chr1_2:28816988-28817007 Msa0065960:intron 60.0%
CCGACCCGAGTCCACTAAGT+TGG + chr1_2:28817072-28817091 None:intergenic 60.0%
CTGACGAAGTGGCGTGCATG+AGG - chr1_2:28817775-28817794 Msa0065960:intron 60.0%
! TGAACCCCGGTAACGGCGTC+CGG - chr1_2:28816406-28816425 Msa0065960:intron 65.0%
TTAGGCCGGACGCCGTTACC+GGG + chr1_2:28816414-28816433 None:intergenic 65.0%
CTTAGGCCGGACGCCGTTAC+CGG + chr1_2:28816415-28816434 None:intergenic 65.0%
GTACCTGCACTGCACGCGCT+CGG - chr1_2:28816884-28816903 Msa0065960:intron 65.0%
GAGTAACCCTCGGGGTGGTG+AGG - chr1_2:28816966-28816985 Msa0065960:intron 65.0%
AGAGCTCCTCACCACCCCGA+GGG + chr1_2:28816975-28816994 None:intergenic 65.0%
TCGGGGTGGTGAGGAGCTCT+CGG - chr1_2:28816975-28816994 Msa0065960:intron 65.0%
GGCTTGCAACGGTGGCATGC+AGG - chr1_2:28821279-28821298 Msa0065960:intron 65.0%
TGCAACGGTGGCATGCAGGC+AGG - chr1_2:28821283-28821302 Msa0065960:intron 65.0%
TAGGCCGGACGCCGTTACCG+GGG + chr1_2:28816413-28816432 None:intergenic 70.0%
TGTCCGAGCGCGTGCAGTGC+AGG + chr1_2:28816890-28816909 None:intergenic 70.0%
GAGAGCTCCTCACCACCCCG+AGG + chr1_2:28816976-28816995 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 28815773 28821606 28815773 ID=Msa0065960;Name=Msa0065960
chr1_2 mRNA 28815773 28821606 28815773 ID=Msa0065960-mRNA-1;Parent=Msa0065960;Name=Msa0065960-mRNA-1;_AED=0.07;_eAED=0.07;_QI=11|0.75|0.6|0.8|0.5|0.6|5|361|203
chr1_2 exon 28815773 28816261 28815773 ID=Msa0065960-mRNA-1:exon:9846;Parent=Msa0065960-mRNA-1
chr1_2 exon 28816439 28816538 28816439 ID=Msa0065960-mRNA-1:exon:9845;Parent=Msa0065960-mRNA-1
chr1_2 exon 28818159 28818246 28818159 ID=Msa0065960-mRNA-1:exon:9844;Parent=Msa0065960-mRNA-1
chr1_2 exon 28818342 28818640 28818342 ID=Msa0065960-mRNA-1:exon:9843;Parent=Msa0065960-mRNA-1
chr1_2 exon 28821599 28821606 28821599 ID=Msa0065960-mRNA-1:exon:9842;Parent=Msa0065960-mRNA-1
chr1_2 five_prime_UTR 28821599 28821606 28821599 ID=Msa0065960-mRNA-1:five_prime_utr;Parent=Msa0065960-mRNA-1
chr1_2 five_prime_UTR 28818638 28818640 28818638 ID=Msa0065960-mRNA-1:five_prime_utr;Parent=Msa0065960-mRNA-1
chr1_2 CDS 28818342 28818637 28818342 ID=Msa0065960-mRNA-1:cds;Parent=Msa0065960-mRNA-1
chr1_2 CDS 28818159 28818246 28818159 ID=Msa0065960-mRNA-1:cds;Parent=Msa0065960-mRNA-1
chr1_2 CDS 28816439 28816538 28816439 ID=Msa0065960-mRNA-1:cds;Parent=Msa0065960-mRNA-1
chr1_2 CDS 28816134 28816261 28816134 ID=Msa0065960-mRNA-1:cds;Parent=Msa0065960-mRNA-1
chr1_2 three_prime_UTR 28815773 28816133 28815773 ID=Msa0065960-mRNA-1:three_prime_utr;Parent=Msa0065960-mRNA-1
Gene Sequence

>Msa0065960

ATGAAGCAATCAAAGGATCCATTCGAAGCAGCATTCGAAGAATCACCACCAGAATCTCCAATCGAAACCGAACCAGACCCAGATGCATCCACTGAAAACCCTAATTCAACCAATTCATCTCTTCCACAATCCACTCTCACTCATGAAGAAGAACACAATCACATCAAAACCCCAAACTCCAATAACACAATCACCAAGAATAAAGATGAAGAAGATGATGAAGAAGAAGATAATATGGATGTTGAACTTGCTAAGTTTCCTACTGCTGGTGACCCTCATAAAATGGCTAAGATGCAGGCTATTTTGTCACAGTTTACTGAAGAACAAATGAGTAGATATGAGTCATTTCGTAGAGCTGGATTCCAGAAAGCTAATATGAAACGGTTATTGGCAAGCATCACTGGGACCCAGAAAATCTCGATTCCAATTACGATTGCAGTATCAGGGATTGCGAAAGTGTTTGTGGGTGAAGTTGTGGAAACAGCTAGAACAATTATGAAAGAGAGGAAGGAAACTGGACCAATTCGGCCCTGTCATCTGAGAGAAGCACATAGACGACTAAAGCTTGAAGGAAAAATCTTTAAGAGAACAACCTCGAGGCTCTTTCGATAA
Protein sequence

>Msa0065960

MKQSKDPFEAAFEESPPESPIETEPDPDASTENPNSTNSSLPQSTLTHEEEHNHIKTPNSNNTITKNKDEEDDEEEDNMDVELAKFPTAGDPHKMAKMQAILSQFTEEQMSRYESFRRAGFQKANMKRLLASITGTQKISIPITIAVSGIAKVFVGEVVETARTIMKERKETGPIRPCHLREAHRRLKLEGKIFKRTTSRLFR*