AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1139000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139000 MtrunA17_Chr7g0258611 95.710 303 11 2 1 303 1 301 0.0 587
Msa1139000 MtrunA17_Chr1g0175201 71.569 306 68 9 1 303 1 290 9.35e-139 394
Msa1139000 MtrunA17_Chr1g0213721 59.774 266 84 9 46 303 5 255 1.66e-99 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1139000 AT3G12130.1 52.597 308 77 6 1 303 1 244 6.05e-91 271
Msa1139000 AT5G06770.6 51.923 208 84 8 103 303 16 214 3.44e-56 181
Msa1139000 AT5G06770.6 73.770 61 16 0 25 85 5 65 1.12e-25 102
Msa1139000 AT5G06770.1 51.923 208 84 8 103 303 38 236 6.76e-56 181
Msa1139000 AT5G06770.1 70.115 87 24 1 1 85 1 87 3.66e-36 130
Msa1139000 AT5G06770.3 51.244 201 82 8 110 303 18 209 2.04e-52 171
Msa1139000 AT5G06770.3 62.791 43 16 0 43 85 18 60 2.52e-12 65.5
Msa1139000 AT5G06770.2 51.244 201 82 8 110 303 18 209 2.04e-52 171
Msa1139000 AT5G06770.2 62.791 43 16 0 43 85 18 60 2.52e-12 65.5
Msa1139000 AT5G06770.4 51.244 201 82 8 110 303 18 209 2.04e-52 171
Msa1139000 AT5G06770.4 62.791 43 16 0 43 85 18 60 2.52e-12 65.5
Msa1139000 AT3G12130.2 57.647 170 57 3 149 303 3 172 8.77e-52 168
Msa1139000 AT5G06770.5 60.135 148 51 5 157 303 24 164 4.26e-49 161

Find 117 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTGGGGCTGGAACATTTC+TGG 0.073478 7_4:+8966807 None:intergenic
AAGCTAATGTTGCTATTTAA+AGG 0.172257 7_4:+8966009 None:intergenic
AGTTCAATGTTTCTCAGATT+TGG 0.216072 7_4:+8966403 None:intergenic
GCAAAAGGATCTTGCACTTT+TGG 0.239220 7_4:-8966208 Msa1139000:CDS
ACTGCTGAAGGCTGCAAATT+TGG 0.247553 7_4:-8966718 Msa1139000:CDS
GGGAACATTTGAACAAATTA+AGG 0.249250 7_4:-8966377 Msa1139000:CDS
CACTTCTTGCACCATGTTCC+TGG 0.251613 7_4:-8966886 Msa1139000:CDS
GGGGCGCCTTGGTTTGAATT+AGG 0.279247 7_4:+8966301 None:intergenic
ATTGTTGTGCATTGCTCCTT+AGG 0.286515 7_4:-8966075 Msa1139000:three_prime_UTR
TTTCTTCCTCCGCTAGGGTT+AGG 0.294576 7_4:-8969966 Msa1139000:five_prime_UTR
GTTCAATGTTTCTCAGATTT+GGG 0.294737 7_4:+8966404 None:intergenic
CGTGGGGCTGGAACATTTCT+GGG 0.304605 7_4:+8966808 None:intergenic
AGCACTTCTGGCTGCCCATT+TGG 0.307249 7_4:-8966919 Msa1139000:CDS
ATGATCTCGAATTGAAAGTT+TGG 0.321235 7_4:+8966432 None:intergenic
TAGGTGGTGCAGACATTTGC+AGG 0.328616 7_4:+8966320 None:intergenic
GGGGCCATCATGGCGCCCCT+GGG 0.351234 7_4:-8966276 Msa1139000:CDS
CCTCCTGTTCCAGCTAGCTT+TGG 0.360587 7_4:-8966556 Msa1139000:CDS
AAGGCGGTGGCTGTGATAAA+AGG 0.361237 7_4:+8970006 None:intergenic
CAGGTGTTAGATTCATCATC+TGG 0.374375 7_4:+8966845 None:intergenic
TTCTTCCTCCGCTAGGGTTA+GGG 0.374608 7_4:-8969965 Msa1139000:five_prime_UTR
AATTCAAACCAAGGCGCCCC+TGG 0.376150 7_4:-8966298 Msa1139000:CDS
ATTGTTGTTGAATCCATGTT+CGG 0.378655 7_4:+8969885 None:intergenic
GTCATTTCGCCCACGGAGAA+TGG 0.389283 7_4:-8966687 Msa1139000:CDS
AGTGTTGAAGCCTCCTTGGC+TGG 0.405561 7_4:-8966511 Msa1139000:CDS
GGCTGGAGCTATCATTGGTA+AGG 0.406355 7_4:-8966494 Msa1139000:CDS
CTGCCAAAACGGCTAGCATT+GGG 0.408913 7_4:+8966595 None:intergenic
GCTTCCTACACCAGTTGATA+AGG 0.410010 7_4:+8969101 None:intergenic
TGGGCGCATGTGCATTTCGT+GGG 0.412329 7_4:+8966791 None:intergenic
TTGTTGTTGAATCCATGTTC+GGG 0.412697 7_4:+8969886 None:intergenic
AAACAGATCTGTCGTCAAAC+TGG 0.418288 7_4:-8966457 Msa1139000:CDS
GGAGGCTTCAACACTGATCT+TGG 0.422971 7_4:+8966519 None:intergenic
CAATCTGATGAGGGAGAGAA+TGG 0.423046 7_4:+8965954 None:intergenic
AGCAGATGGCGCAGAACCAT+TGG 0.426240 7_4:+8966771 None:intergenic
GGCCATCATGGCGCCCCTGG+GGG 0.431404 7_4:-8966274 Msa1139000:CDS
AAGTGGCAGCTCTCACCAAA+TGG 0.432857 7_4:+8966904 None:intergenic
GCTGGAACATTTCTGGGTGC+AGG 0.442312 7_4:+8966814 None:intergenic
GCAGATGGCGCAGAACCATT+GGG 0.447775 7_4:+8966772 None:intergenic
CTGGGTGCAGGAGGTGCTGC+AGG 0.454430 7_4:+8966826 None:intergenic
GCACCAAAGCTAGCTGGAAC+AGG 0.460612 7_4:+8966553 None:intergenic
CAACACCAAATTCATAAAAC+AGG 0.460654 7_4:+8965865 None:intergenic
GATCAGTGTTGAAGCCTCCT+TGG 0.462907 7_4:-8966515 Msa1139000:CDS
TCCTCTCTTGCGCATATCCA+TGG 0.463127 7_4:+8969912 None:intergenic
TTGTTGTGCATTGCTCCTTA+GGG 0.470128 7_4:-8966074 Msa1139000:three_prime_UTR
TCATTTCGCCCACGGAGAAT+GGG 0.473005 7_4:-8966686 Msa1139000:CDS
GCATGTGCATTTCGTGGGGC+TGG 0.479969 7_4:+8966796 None:intergenic
TTGGGCGCATGTGCATTTCG+TGG 0.481654 7_4:+8966790 None:intergenic
GAAATGGAGTCCTTATCAAC+TGG 0.481779 7_4:-8969111 Msa1139000:CDS
ACAGAACACTACTGCTGCTA+CGG 0.482520 7_4:+8965921 None:intergenic
ATTCAAACCAAGGCGCCCCT+GGG 0.483309 7_4:-8966297 Msa1139000:CDS
GGTGCACTGTCGTGTCAGAC+AGG 0.483317 7_4:-8966119 Msa1139000:three_prime_UTR
TCCTTGGCTGGAGCTATCAT+TGG 0.488960 7_4:-8966499 Msa1139000:CDS
GCCCACGGAGAATGGGAACT+TGG 0.492658 7_4:-8966679 Msa1139000:CDS
ACTGCCAAAACGGCTAGCAT+TGG 0.497485 7_4:+8966594 None:intergenic
CTGAGAAACATTGAACTTGA+GGG 0.498316 7_4:-8966397 Msa1139000:CDS
TCATCAAACGATGGAGCTAC+AGG 0.504501 7_4:+8966652 None:intergenic
GCATTTGCACCAAAGCTAGC+TGG 0.505722 7_4:+8966547 None:intergenic
CGGAGGAAGAAAAGAAAAGA+GGG 0.510484 7_4:+8969977 None:intergenic
ATGAAAATCTTACCTTAATG+AGG 0.513346 7_4:-8966143 Msa1139000:exon
AAGCTAGCTGGAACAGGAGG+AGG 0.517450 7_4:+8966559 None:intergenic
TCTGAGAAACATTGAACTTG+AGG 0.528852 7_4:-8966398 Msa1139000:CDS
AGTGGCAGCTCTCACCAAAT+GGG 0.532140 7_4:+8966905 None:intergenic
CAGAACACTACTGCTGCTAC+GGG 0.544619 7_4:+8965922 None:intergenic
CATTATAACCGCCAGGAACA+TGG 0.547838 7_4:+8966875 None:intergenic
GCGCCTTGGTTTGAATTAGG+TGG 0.551052 7_4:+8966304 None:intergenic
CAAGATTCGATCTCGATCCA+TGG 0.552952 7_4:-8969929 Msa1139000:exon
CCATCCGATGACTGCCAAAA+CGG 0.555273 7_4:+8966584 None:intergenic
TCACAATGGTCACCGTCACA+TGG 0.555494 7_4:-8966623 Msa1139000:CDS
ACTATGATAAGTTCAGTGTA+GGG 0.555898 7_4:+8965889 None:intergenic
TTCAACACTGATCTTGGCAG+TGG 0.556993 7_4:+8966525 None:intergenic
GGAACATTTCTGGGTGCAGG+AGG 0.557375 7_4:+8966817 None:intergenic
TGCCAAAACGGCTAGCATTG+GGG 0.565996 7_4:+8966596 None:intergenic
AACTATGATAAGTTCAGTGT+AGG 0.569604 7_4:+8965888 None:intergenic
ACCAAGTTCCCATTCTCCGT+GGG 0.571356 7_4:+8966678 None:intergenic
GCCAAAACGGCTAGCATTGG+GGG 0.571562 7_4:+8966597 None:intergenic
GACAAATGTCATTTCGCCCA+CGG 0.574168 7_4:-8966694 Msa1139000:CDS
GGAGCTATCATTGGTAAGGG+TGG 0.574888 7_4:-8966490 Msa1139000:CDS
GAGTCCTTATCAACTGGTGT+AGG 0.575007 7_4:-8969105 Msa1139000:CDS
GCGGAGGAAGAAAAGAAAAG+AGG 0.576822 7_4:+8969976 None:intergenic
CGAAATGCACATGCGCCCAA+TGG 0.577209 7_4:-8966787 Msa1139000:CDS
TATTAAACTTGCTGCATATG+CGG 0.578734 7_4:+8966740 None:intergenic
GCTGGAGCTATCATTGGTAA+GGG 0.579604 7_4:-8966493 Msa1139000:CDS
TACCAAGTTCCCATTCTCCG+TGG 0.580757 7_4:+8966677 None:intergenic
CAGGAACATGGTGCAAGAAG+TGG 0.580928 7_4:+8966887 None:intergenic
TTCAAACCAAGGCGCCCCTG+GGG 0.582988 7_4:-8966296 Msa1139000:CDS
GGATGCAAGCAACATGGTGA+AGG 0.586493 7_4:-8966356 Msa1139000:CDS
ACCAATGATAGCTCCAGCCA+AGG 0.601213 7_4:+8966498 None:intergenic
AGCAAGTTTAATACTGCTGA+AGG 0.610803 7_4:-8966730 Msa1139000:CDS
CACAATGGTCACCGTCACAT+GGG 0.612054 7_4:-8966622 Msa1139000:CDS
GAACATGGATTCAACAACAA+TGG 0.613103 7_4:-8969883 Msa1139000:CDS
GTGCACTGTCGTGTCAGACA+GGG 0.614557 7_4:-8966118 Msa1139000:three_prime_UTR
GAAACAGCATTATAACCGCC+AGG 0.616377 7_4:+8966868 None:intergenic
TAAGTCCTGTCAGTACCCTA+AGG 0.617456 7_4:+8966059 None:intergenic
TACAGTCAACAATCTGATGA+GGG 0.620247 7_4:+8965945 None:intergenic
TCCATGGATATGCGCAAGAG+AGG 0.620448 7_4:-8969913 Msa1139000:CDS
CCAAAGCTAGCTGGAACAGG+AGG 0.620733 7_4:+8966556 None:intergenic
AGGTGTTAGATTCATCATCT+GGG 0.623445 7_4:+8966846 None:intergenic
TTGCTCCTTAGGGTACTGAC+AGG 0.626554 7_4:-8966064 Msa1139000:three_prime_UTR
GTACAGTCAACAATCTGATG+AGG 0.628204 7_4:+8965944 None:intergenic
TCAACAGAAAGGATGGCAGA+AGG 0.629208 7_4:+8965819 None:intergenic
TTTGATGATCACCGTCACAA+TGG 0.633364 7_4:-8966637 Msa1139000:CDS
AAAATCTTACCTTAATGAGG+CGG 0.634934 7_4:-8966140 Msa1139000:three_prime_UTR
AAGAGAGGAAGACCCGAACA+TGG 0.639026 7_4:-8969898 Msa1139000:CDS
AATTAAGGATGCAAGCAACA+TGG 0.639069 7_4:-8966362 Msa1139000:CDS
TCAAACCAAGGCGCCCCTGG+GGG 0.642892 7_4:-8966295 Msa1139000:CDS
GGGCGCATGTGCATTTCGTG+GGG 0.653124 7_4:+8966792 None:intergenic
AGGTGGTGCAGACATTTGCA+GGG 0.654364 7_4:+8966321 None:intergenic
GCACCACCTAATTCAAACCA+AGG 0.655471 7_4:-8966307 Msa1139000:CDS
GGAGGAAGAAAAGAAAAGAG+GGG 0.658122 7_4:+8969978 None:intergenic
CCAAAACGGCTAGCATTGGG+GGG 0.662448 7_4:+8966598 None:intergenic
TAAAACCCTAACCCTAGCGG+AGG 0.665514 7_4:+8969960 None:intergenic
TTCTTGCACCATGTTCCTGG+CGG 0.668994 7_4:-8966883 Msa1139000:CDS
CATGGATTCAACAACAATGG+CGG 0.674602 7_4:-8969880 Msa1139000:CDS
AATGATAGCTCCAGCCAAGG+AGG 0.680423 7_4:+8966501 None:intergenic
GGATTCAAGAAATCCAGACA+TGG 0.691625 7_4:-8969859 Msa1139000:intron
TGACGGTGATCATCAAACGA+TGG 0.692145 7_4:+8966643 None:intergenic
GAGTAAAACCCTAACCCTAG+CGG 0.695995 7_4:+8969957 None:intergenic
TGTGACGGTGACCATTGTGA+CGG 0.721866 7_4:+8966626 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAAAAATTTAAATT+TGG - chr7_4:8968292-8968311 Msa1139000:intron 0.0%
!! TGTATTATTATTATTGTTAT+TGG - chr7_4:8966191-8966210 Msa1139000:CDS 10.0%
!!! AGTTAATTTCCAATTTTTAT+CGG - chr7_4:8966234-8966253 Msa1139000:CDS 15.0%
!! TGAAATTATTGACAATTATA+AGG + chr7_4:8966278-8966297 None:intergenic 15.0%
!!! ACACAATTTTAAAACTTTTA+GGG + chr7_4:8966417-8966436 None:intergenic 15.0%
!! TTAAAATATATACAGTCTTA+GGG + chr7_4:8966669-8966688 None:intergenic 15.0%
!!! TTTAAAATATATACAGTCTT+AGG + chr7_4:8966670-8966689 None:intergenic 15.0%
!! TACTTATAATTTATTTAGAC+AGG + chr7_4:8966848-8966867 None:intergenic 15.0%
!!! TGATGTTAAAATTTTTAAAG+TGG + chr7_4:8967198-8967217 None:intergenic 15.0%
!! AAACTAATAATTTATGTGTA+CGG + chr7_4:8967335-8967354 None:intergenic 15.0%
!! TGCTTTATAATTATATGAAA+AGG + chr7_4:8967735-8967754 None:intergenic 15.0%
!!! TTTTCATATAATTATAAAGC+AGG - chr7_4:8967734-8967753 Msa1139000:intron 15.0%
!! AATTCAGTTGAAATATAAAA+TGG - chr7_4:8968158-8968177 Msa1139000:intron 15.0%
!! ATTCAGTTGAAATATAAAAT+GGG - chr7_4:8968159-8968178 Msa1139000:intron 15.0%
!!! ATATATTTGTTTTTTGTCAT+TGG - chr7_4:8968357-8968376 Msa1139000:intron 15.0%
!! ATATCTTGTCAAATAATTTA+TGG - chr7_4:8968827-8968846 Msa1139000:intron 15.0%
!! CTAAAAATCATACAAATTCA+TGG + chr7_4:8966117-8966136 None:intergenic 20.0%
!!! CATGAATTTGTATGATTTTT+AGG - chr7_4:8966115-8966134 Msa1139000:three_prime_UTR 20.0%
!!! GAAATTTTACCGATAAAAAT+TGG + chr7_4:8966246-8966265 None:intergenic 20.0%
!! AATTGTCAATAATTTCAGAT+TGG - chr7_4:8966281-8966300 Msa1139000:CDS 20.0%
!!! CACAGCAAATTTTAAAAAAT+TGG + chr7_4:8966367-8966386 None:intergenic 20.0%
!!! GACACAATTTTAAAACTTTT+AGG + chr7_4:8966418-8966437 None:intergenic 20.0%
!!! ATAATGTTTTGTAACAGAAA+TGG - chr7_4:8966754-8966773 Msa1139000:CDS 20.0%
!! GCTATTAAAAGTAGAAATTA+TGG + chr7_4:8966892-8966911 None:intergenic 20.0%
!! AAATTGTGCTATAATTAACT+CGG - chr7_4:8966984-8967003 Msa1139000:intron 20.0%
!! ATAAACAATAAAATCCACTA+CGG + chr7_4:8967231-8967250 None:intergenic 20.0%
!!! AGAAAATAGAGACATTTTTA+TGG - chr7_4:8967362-8967381 Msa1139000:intron 20.0%
!!! TCTTTTAAATTTTTTGCCTT+TGG - chr7_4:8967701-8967720 Msa1139000:intron 20.0%
!! AAAAGACATATGTGTAATAT+GGG + chr7_4:8968593-8968612 None:intergenic 20.0%
!! TAAAAGACATATGTGTAATA+TGG + chr7_4:8968594-8968613 None:intergenic 20.0%
!!! GAATGGATTTTCATAATAAA+GGG + chr7_4:8969913-8969932 None:intergenic 20.0%
!!! AGAATGGATTTTCATAATAA+AGG + chr7_4:8969914-8969933 None:intergenic 20.0%
!!! TTTTCGTATAAGCTATTTCT+TGG - chr7_4:8966564-8966583 Msa1139000:CDS 25.0%
! GTAAGAGATTAATAAATGAG+AGG - chr7_4:8966711-8966730 Msa1139000:CDS 25.0%
! AGATTATAACCTGAAAAACT+TGG + chr7_4:8966822-8966841 None:intergenic 25.0%
!! GTATATGAAGCTTTTATTAC+AGG - chr7_4:8967006-8967025 Msa1139000:intron 25.0%
! TAAACAAGTAAACACATTAG+TGG - chr7_4:8967048-8967067 Msa1139000:intron 25.0%
! AATGGTCAATTTATCATTGA+TGG + chr7_4:8967137-8967156 None:intergenic 25.0%
! GATATGAACATGAGTAAAAA+TGG + chr7_4:8967155-8967174 None:intergenic 25.0%
! TAAACAATAAAATCCACTAC+GGG + chr7_4:8967230-8967249 None:intergenic 25.0%
!! AAGTTCAATTCATGTTACTT+AGG + chr7_4:8967283-8967302 None:intergenic 25.0%
!! TAACATGAATTGAACTTGTT+TGG - chr7_4:8967286-8967305 Msa1139000:intron 25.0%
!! TTAGAATTGTTTCTTGTTCA+AGG + chr7_4:8967399-8967418 None:intergenic 25.0%
!! CTTCGATAAGTAATCAATTT+TGG - chr7_4:8967639-8967658 Msa1139000:intron 25.0%
!!! ATAAGTAATCAATTTTGGTG+AGG - chr7_4:8967644-8967663 Msa1139000:intron 25.0%
!! AGAAAAATTGATTTCTACAG+AGG + chr7_4:8967684-8967703 None:intergenic 25.0%
! AATTATAAAGCAGGATAAGT+TGG - chr7_4:8967743-8967762 Msa1139000:intron 25.0%
!! AACTTTCATGCGTATATTTT+TGG - chr7_4:8967790-8967809 Msa1139000:intron 25.0%
!!! TACTCAACTTTTCAAGAATT+TGG - chr7_4:8967909-8967928 Msa1139000:intron 25.0%
!!! ATCATTGATTTGATTCAAAC+TGG - chr7_4:8967987-8968006 Msa1139000:intron 25.0%
!!! TCATTGATTTGATTCAAACT+GGG - chr7_4:8967988-8968007 Msa1139000:intron 25.0%
! TTAAAGAACATCTCTAATAG+GGG + chr7_4:8968252-8968271 None:intergenic 25.0%
! GTTAAAGAACATCTCTAATA+GGG + chr7_4:8968253-8968272 None:intergenic 25.0%
! AGTTAAAGAACATCTCTAAT+AGG + chr7_4:8968254-8968273 None:intergenic 25.0%
!! TTACATGCACTATTCTAAAA+TGG - chr7_4:8968527-8968546 Msa1139000:intron 25.0%
!! CATATGTCTTTTATACTGTT+TGG - chr7_4:8968601-8968620 Msa1139000:intron 25.0%
! TTAGCTTATTCATATGTATC+TGG - chr7_4:8968673-8968692 Msa1139000:intron 25.0%
! TAGCTTATTCATATGTATCT+GGG - chr7_4:8968674-8968693 Msa1139000:intron 25.0%
!! AGAACAAAGGTGTATTAATT+AGG + chr7_4:8968789-8968808 None:intergenic 25.0%
! TGTCAAATAATTTATGGATC+TGG - chr7_4:8968833-8968852 Msa1139000:intron 25.0%
! GTCAAATAATTTATGGATCT+GGG - chr7_4:8968834-8968853 Msa1139000:intron 25.0%
! TCAAATAATTTATGGATCTG+GGG - chr7_4:8968835-8968854 Msa1139000:intron 25.0%
! ATGAAAATCTTACCTTAATG+AGG - chr7_4:8969738-8969757 Msa1139000:intron 25.0%
!!! AAGCTAATGTTGCTATTTAA+AGG + chr7_4:8969875-8969894 None:intergenic 25.0%
!! TAGTTCCTGTTTTATGAATT+TGG - chr7_4:8970011-8970030 Msa1139000:five_prime_UTR 25.0%
! ATTGTTGTTGAATCCATGTT+CGG + chr7_4:8965999-8966018 None:intergenic 30.0%
AAAAAAAAACGAACCATGTC+TGG + chr7_4:8966038-8966057 None:intergenic 30.0%
TTGGTCAAATATTCAGTAGA+TGG - chr7_4:8966300-8966319 Msa1139000:CDS 30.0%
TGGTCAAATATTCAGTAGAT+GGG - chr7_4:8966301-8966320 Msa1139000:CDS 30.0%
TACAGGTACAAACTGTTATT+TGG - chr7_4:8967023-8967042 Msa1139000:intron 30.0%
!! CAAAGTGTAGTCTTTTAAGT+AGG + chr7_4:8967088-8967107 None:intergenic 30.0%
! TTATGAACCAACCTTTTGAT+CGG - chr7_4:8967247-8967266 Msa1139000:intron 30.0%
! TGAATTGAACTTGTTTGGTT+CGG - chr7_4:8967291-8967310 Msa1139000:intron 30.0%
TGTTTCTTGTTCAAGGTTTA+TGG + chr7_4:8967392-8967411 None:intergenic 30.0%
AAACAATTCTAATCGATCTC+AGG - chr7_4:8967407-8967426 Msa1139000:intron 30.0%
! ATTCGTCAATTGTTTCTTGA+TGG + chr7_4:8967451-8967470 None:intergenic 30.0%
CCATTAGAGAAACAATAAGA+GGG + chr7_4:8967479-8967498 None:intergenic 30.0%
ACCATTAGAGAAACAATAAG+AGG + chr7_4:8967480-8967499 None:intergenic 30.0%
AGACGATAAAATGGCAATAA+TGG + chr7_4:8967833-8967852 None:intergenic 30.0%
! TTTTGTTCCGTATGAAATTC+TGG - chr7_4:8967874-8967893 Msa1139000:intron 30.0%
! GGATTTTCCAGAATTTCATA+CGG + chr7_4:8967884-8967903 None:intergenic 30.0%
! ATGAAATTCTGGAAAATCCT+AGG - chr7_4:8967885-8967904 Msa1139000:intron 30.0%
TTACAAGTCAAAATGTGTGA+AGG - chr7_4:8967946-8967965 Msa1139000:intron 30.0%
TAAAGAACATCTCTAATAGG+GGG + chr7_4:8968251-8968270 None:intergenic 30.0%
!!! GTGAAGTCTTTTTAGAATGT+TGG - chr7_4:8968384-8968403 Msa1139000:intron 30.0%
!! TAATATGTAGAGTGTCGTTT+GGG - chr7_4:8968460-8968479 Msa1139000:intron 30.0%
AGCTTATTCATATGTATCTG+GGG - chr7_4:8968675-8968694 Msa1139000:intron 30.0%
CAAATAATTTATGGATCTGG+GGG - chr7_4:8968836-8968855 Msa1139000:intron 30.0%
!! TATTAAACTTGCTGCATATG+CGG + chr7_4:8969144-8969163 None:intergenic 30.0%
ATGATCTCGAATTGAAAGTT+TGG + chr7_4:8969452-8969471 None:intergenic 30.0%
GTTCAATGTTTCTCAGATTT+GGG + chr7_4:8969480-8969499 None:intergenic 30.0%
AGTTCAATGTTTCTCAGATT+TGG + chr7_4:8969481-8969500 None:intergenic 30.0%
GGGAACATTTGAACAAATTA+AGG - chr7_4:8969504-8969523 Msa1139000:intron 30.0%
!!! TTTTCAAGTTGTTTCCATGA+TGG + chr7_4:8969633-8969652 None:intergenic 30.0%
AAAATCTTACCTTAATGAGG+CGG - chr7_4:8969741-8969760 Msa1139000:intron 30.0%
ACTATGATAAGTTCAGTGTA+GGG + chr7_4:8969995-8970014 None:intergenic 30.0%
AACTATGATAAGTTCAGTGT+AGG + chr7_4:8969996-8970015 None:intergenic 30.0%
CAACACCAAATTCATAAAAC+AGG + chr7_4:8970019-8970038 None:intergenic 30.0%
!!! GTTTTATGAATTTGGTGTTG+CGG - chr7_4:8970019-8970038 Msa1139000:five_prime_UTR 30.0%
!! AAAGAAAAGAGGGGTTTTGA+AGG + chr7_4:8965897-8965916 None:intergenic 35.0%
! TTGTTGTTGAATCCATGTTC+GGG + chr7_4:8965998-8966017 None:intergenic 35.0%
GAACATGGATTCAACAACAA+TGG - chr7_4:8965998-8966017 Msa1139000:three_prime_UTR 35.0%
! TTGGTGTGTTTCTGTGTAAT+TGG - chr7_4:8966210-8966229 Msa1139000:CDS 35.0%
GGTCAAATATTCAGTAGATG+GGG - chr7_4:8966302-8966321 Msa1139000:CDS 35.0%
ATAAGCTGTTTGTCCAAACA+GGG + chr7_4:8966458-8966477 None:intergenic 35.0%
AATAAGCTGTTTGTCCAAAC+AGG + chr7_4:8966459-8966478 None:intergenic 35.0%
AAATGAGAGGATGTTAACTG+AGG - chr7_4:8966724-8966743 Msa1139000:CDS 35.0%
AACCTGAAAAACTTGGTACA+TGG + chr7_4:8966815-8966834 None:intergenic 35.0%
CTTAAAAGACTACACTTTGC+AGG - chr7_4:8967089-8967108 Msa1139000:intron 35.0%
TTAGAGAAACAATAAGAGGG+TGG + chr7_4:8967476-8967495 None:intergenic 35.0%
! CCCTCTTATTGTTTCTCTAA+TGG - chr7_4:8967476-8967495 Msa1139000:intron 35.0%
AGGGATACAGTAAACAATGA+GGG + chr7_4:8967540-8967559 None:intergenic 35.0%
AAGGGATACAGTAAACAATG+AGG + chr7_4:8967541-8967560 None:intergenic 35.0%
GACAGAGCAGAAAAACAAAA+GGG + chr7_4:8967559-8967578 None:intergenic 35.0%
TGACAGAGCAGAAAAACAAA+AGG + chr7_4:8967560-8967579 None:intergenic 35.0%
!! ATCAATTTTGGTGAGGTGAA+TGG - chr7_4:8967651-8967670 Msa1139000:intron 35.0%
!! TCAATTTTGGTGAGGTGAAT+GGG - chr7_4:8967652-8967671 Msa1139000:intron 35.0%
AAGCTCTGTAGACGATAAAA+TGG + chr7_4:8967842-8967861 None:intergenic 35.0%
CTTGAAAAGTTGAGTAACCT+AGG + chr7_4:8967905-8967924 None:intergenic 35.0%
GATTTGATTCAAACTGGGTT+AGG - chr7_4:8967993-8968012 Msa1139000:intron 35.0%
TGAACACACGAACATAATCT+AGG - chr7_4:8968056-8968075 Msa1139000:intron 35.0%
!! GTAATATGTAGAGTGTCGTT+TGG - chr7_4:8968459-8968478 Msa1139000:intron 35.0%
AAACATACAGCACGAACATT+TGG + chr7_4:8968627-8968646 None:intergenic 35.0%
! GTGCTGTATGTTTTCCTTTA+AGG - chr7_4:8968634-8968653 Msa1139000:intron 35.0%
GCTTATTCATATGTATCTGG+GGG - chr7_4:8968676-8968695 Msa1139000:intron 35.0%
CTTATTCATATGTATCTGGG+GGG - chr7_4:8968677-8968696 Msa1139000:intron 35.0%
AGCATTTGAGAGTTTATGAC+TGG - chr7_4:8968729-8968748 Msa1139000:intron 35.0%
ATGCAAAGTAGATCTGTGAA+TGG - chr7_4:8968755-8968774 Msa1139000:intron 35.0%
! TTGTATTGATGCTCTTATGC+AGG - chr7_4:8968860-8968879 Msa1139000:intron 35.0%
!!! TTTTTGTTTTGCAGCACTTC+TGG - chr7_4:8968950-8968969 Msa1139000:intron 35.0%
AGGTGTTAGATTCATCATCT+GGG + chr7_4:8969038-8969057 None:intergenic 35.0%
AGCAAGTTTAATACTGCTGA+AGG - chr7_4:8969151-8969170 Msa1139000:intron 35.0%
TCTGAGAAACATTGAACTTG+AGG - chr7_4:8969483-8969502 Msa1139000:intron 35.0%
CTGAGAAACATTGAACTTGA+GGG - chr7_4:8969484-8969503 Msa1139000:intron 35.0%
AATTAAGGATGCAAGCAACA+TGG - chr7_4:8969519-8969538 Msa1139000:intron 35.0%
! CTCTGTGAGAATTTTGCAAA+AGG - chr7_4:8969658-8969677 Msa1139000:intron 35.0%
!!! GAAAGATGTCATTTTGCACA+TGG - chr7_4:8969697-8969716 Msa1139000:intron 35.0%
TACAGTCAACAATCTGATGA+GGG + chr7_4:8969939-8969958 None:intergenic 35.0%
GGAGGAAGAAAAGAAAAGAG+GGG + chr7_4:8965906-8965925 None:intergenic 40.0%
CGGAGGAAGAAAAGAAAAGA+GGG + chr7_4:8965907-8965926 None:intergenic 40.0%
! TTTTCTTTTCTTCCTCCGCT+AGG - chr7_4:8965909-8965928 Msa1139000:three_prime_UTR 40.0%
! TTTCTTTTCTTCCTCCGCTA+GGG - chr7_4:8965910-8965929 Msa1139000:three_prime_UTR 40.0%
CATGGATTCAACAACAATGG+CGG - chr7_4:8966001-8966020 Msa1139000:three_prime_UTR 40.0%
GGATTCAAGAAATCCAGACA+TGG - chr7_4:8966022-8966041 Msa1139000:three_prime_UTR 40.0%
TGGTAAAAACGAAAGCGAAG+CGG + chr7_4:8966097-8966116 None:intergenic 40.0%
! TTGTGTCACTCTACAAAGCA+AGG - chr7_4:8966431-8966450 Msa1139000:CDS 40.0%
! TGTGTCACTCTACAAAGCAA+GGG - chr7_4:8966432-8966451 Msa1139000:CDS 40.0%
TCAGATAAGCCAATCCAAAC+AGG - chr7_4:8966643-8966662 Msa1139000:CDS 40.0%
GAAATGGAGTCCTTATCAAC+TGG - chr7_4:8966770-8966789 Msa1139000:CDS 40.0%
! AGCCATGTACCAAGTTTTTC+AGG - chr7_4:8966810-8966829 Msa1139000:CDS 40.0%
ACACTTTGCAGGACAATAGT+TGG - chr7_4:8967100-8967119 Msa1139000:intron 40.0%
CACTTTGCAGGACAATAGTT+GGG - chr7_4:8967101-8967120 Msa1139000:intron 40.0%
TAGCTTACCGATCAAAAGGT+TGG + chr7_4:8967257-8967276 None:intergenic 40.0%
!!! GGTCTGCAATGTTTTGAAGT+TGG - chr7_4:8967497-8967516 Msa1139000:intron 40.0%
CAGTAAACAATGAGGGAAAG+TGG + chr7_4:8967533-8967552 None:intergenic 40.0%
TGAAAAGGTCAGACAACCAA+AGG + chr7_4:8967720-8967739 None:intergenic 40.0%
! TCCTCTGTGTTCTTTTCACT+TGG - chr7_4:8968221-8968240 Msa1139000:intron 40.0%
ACCAAGTGAAAAGAACACAG+AGG + chr7_4:8968225-8968244 None:intergenic 40.0%
!! TTAAGTGTCCTAGAAGTGTC+TGG - chr7_4:8968407-8968426 Msa1139000:intron 40.0%
!! TAAGTGTCCTAGAAGTGTCT+GGG - chr7_4:8968408-8968427 Msa1139000:intron 40.0%
GTTGGAAATATGCCAGACAT+TGG - chr7_4:8968495-8968514 Msa1139000:intron 40.0%
TAACAGTTACAGCCAATGTC+TGG + chr7_4:8968510-8968529 None:intergenic 40.0%
TAATATGGGACAGATCTAGC+AGG + chr7_4:8968579-8968598 None:intergenic 40.0%
! TCCTTTAAGGATCTCAGTGT+TGG - chr7_4:8968647-8968666 Msa1139000:intron 40.0%
TCCAACACTGAGATCCTTAA+AGG + chr7_4:8968651-8968670 None:intergenic 40.0%
TAGAGAGAGAGAGAGAACAA+AGG + chr7_4:8968802-8968821 None:intergenic 40.0%
TATTGATGCTCTTATGCAGG+TGG - chr7_4:8968863-8968882 Msa1139000:intron 40.0%
CAGGTGTTAGATTCATCATC+TGG + chr7_4:8969039-8969058 None:intergenic 40.0%
! TTTGATGATCACCGTCACAA+TGG - chr7_4:8969244-8969263 Msa1139000:intron 40.0%
AAACAGATCTGTCGTCAAAC+TGG - chr7_4:8969424-8969443 Msa1139000:intron 40.0%
! GCAAAAGGATCTTGCACTTT+TGG - chr7_4:8969673-8969692 Msa1139000:intron 40.0%
ATTGTTGTGCATTGCTCCTT+AGG - chr7_4:8969806-8969825 Msa1139000:intron 40.0%
TTGTTGTGCATTGCTCCTTA+GGG - chr7_4:8969807-8969826 Msa1139000:intron 40.0%
GTACAGTCAACAATCTGATG+AGG + chr7_4:8969940-8969959 None:intergenic 40.0%
!!! GAAAAGAGGGGTTTTGAAGG+CGG + chr7_4:8965894-8965913 None:intergenic 45.0%
GCGGAGGAAGAAAAGAAAAG+AGG + chr7_4:8965908-8965927 None:intergenic 45.0%
GAGTAAAACCCTAACCCTAG+CGG + chr7_4:8965927-8965946 None:intergenic 45.0%
CAAGATTCGATCTCGATCCA+TGG - chr7_4:8965952-8965971 Msa1139000:three_prime_UTR 45.0%
ATACAGTCTTAGGGCCTGTT+TGG + chr7_4:8966660-8966679 None:intergenic 45.0%
GAGTCCTTATCAACTGGTGT+AGG - chr7_4:8966776-8966795 Msa1139000:CDS 45.0%
! GCTTCCTACACCAGTTGATA+AGG + chr7_4:8966783-8966802 None:intergenic 45.0%
GCGATAGCTTACCGATCAAA+AGG + chr7_4:8967261-8967280 None:intergenic 45.0%
!! TGAACTTGTTTGGTTCGGTC+AGG - chr7_4:8967296-8967315 Msa1139000:intron 45.0%
ACTGCATGTGTGTGTACTTG+TGG - chr7_4:8968089-8968108 Msa1139000:intron 45.0%
!! TTTGGGTGTTGGTGTTGTGT+TGG - chr7_4:8968477-8968496 Msa1139000:intron 45.0%
CCAACTTCAAAGGATCACAC+AGG + chr7_4:8968556-8968575 None:intergenic 45.0%
!! CCTGTGTGATCCTTTGAAGT+TGG - chr7_4:8968553-8968572 Msa1139000:intron 45.0%
ATCTAGCAGGCCAACTTCAA+AGG + chr7_4:8968566-8968585 None:intergenic 45.0%
TGCTCTTATGCAGGTGGATA+AGG - chr7_4:8968869-8968888 Msa1139000:intron 45.0%
GCTCTTATGCAGGTGGATAA+GGG - chr7_4:8968870-8968889 Msa1139000:intron 45.0%
TTATGCAGGTGGATAAGGGT+GGG - chr7_4:8968874-8968893 Msa1139000:intron 45.0%
CATTATAACCGCCAGGAACA+TGG + chr7_4:8969009-8969028 None:intergenic 45.0%
GAAACAGCATTATAACCGCC+AGG + chr7_4:8969016-8969035 None:intergenic 45.0%
! ATGCGGCTTTTAACAGCAGA+TGG + chr7_4:8969127-8969146 None:intergenic 45.0%
ACTGCTGAAGGCTGCAAATT+TGG - chr7_4:8969163-8969182 Msa1139000:intron 45.0%
! GACAAATGTCATTTCGCCCA+CGG - chr7_4:8969187-8969206 Msa1139000:intron 45.0%
TCATCAAACGATGGAGCTAC+AGG + chr7_4:8969232-8969251 None:intergenic 45.0%
TGACGGTGATCATCAAACGA+TGG + chr7_4:8969241-8969260 None:intergenic 45.0%
TTCAACACTGATCTTGGCAG+TGG + chr7_4:8969359-8969378 None:intergenic 45.0%
GCTGGAGCTATCATTGGTAA+GGG - chr7_4:8969388-8969407 Msa1139000:intron 45.0%
GCACCACCTAATTCAAACCA+AGG - chr7_4:8969574-8969593 Msa1139000:intron 45.0%
TAAGTCCTGTCAGTACCCTA+AGG + chr7_4:8969825-8969844 None:intergenic 45.0%
CAATCTGATGAGGGAGAGAA+TGG + chr7_4:8969930-8969949 None:intergenic 45.0%
ACAGAACACTACTGCTGCTA+CGG + chr7_4:8969963-8969982 None:intergenic 45.0%
AAGGCGGTGGCTGTGATAAA+AGG + chr7_4:8965878-8965897 None:intergenic 50.0%
TTTCTTCCTCCGCTAGGGTT+AGG - chr7_4:8965915-8965934 Msa1139000:three_prime_UTR 50.0%
TTCTTCCTCCGCTAGGGTTA+GGG - chr7_4:8965916-8965935 Msa1139000:three_prime_UTR 50.0%
TAAAACCCTAACCCTAGCGG+AGG + chr7_4:8965924-8965943 None:intergenic 50.0%
TCCATGGATATGCGCAAGAG+AGG - chr7_4:8965968-8965987 Msa1139000:three_prime_UTR 50.0%
TCCTCTCTTGCGCATATCCA+TGG + chr7_4:8965972-8965991 None:intergenic 50.0%
AAGAGAGGAAGACCCGAACA+TGG - chr7_4:8965983-8966002 Msa1139000:three_prime_UTR 50.0%
TACAAAGCAAGGGCCCTGTT+TGG - chr7_4:8966442-8966461 Msa1139000:CDS 50.0%
GTCTTAGGGCCTGTTTGGAT+TGG + chr7_4:8966655-8966674 None:intergenic 50.0%
ATCAAGCTTTCAGCCCGTAG+TGG - chr7_4:8967214-8967233 Msa1139000:intron 50.0%
! AAGTGTCTGGGTGCTTGCTA+GGG - chr7_4:8968420-8968439 Msa1139000:intron 50.0%
!! GTAGAGTGTCGTTTGGGTGT+TGG - chr7_4:8968466-8968485 Msa1139000:intron 50.0%
TGGGGGGACTTACGATATTC+TGG - chr7_4:8968693-8968712 Msa1139000:intron 50.0%
CTTATGCAGGTGGATAAGGG+TGG - chr7_4:8968873-8968892 Msa1139000:intron 50.0%
AGTGGCAGCTCTCACCAAAT+GGG + chr7_4:8968979-8968998 None:intergenic 50.0%
AAGTGGCAGCTCTCACCAAA+TGG + chr7_4:8968980-8968999 None:intergenic 50.0%
CAGGAACATGGTGCAAGAAG+TGG + chr7_4:8968997-8969016 None:intergenic 50.0%
CACTTCTTGCACCATGTTCC+TGG - chr7_4:8968995-8969014 Msa1139000:intron 50.0%
TTCTTGCACCATGTTCCTGG+CGG - chr7_4:8968998-8969017 Msa1139000:intron 50.0%
TCATTTCGCCCACGGAGAAT+GGG - chr7_4:8969195-8969214 Msa1139000:intron 50.0%
ACCAAGTTCCCATTCTCCGT+GGG + chr7_4:8969206-8969225 None:intergenic 50.0%
TACCAAGTTCCCATTCTCCG+TGG + chr7_4:8969207-8969226 None:intergenic 50.0%
TGTGACGGTGACCATTGTGA+CGG + chr7_4:8969258-8969277 None:intergenic 50.0%
TCACAATGGTCACCGTCACA+TGG - chr7_4:8969258-8969277 Msa1139000:intron 50.0%
CACAATGGTCACCGTCACAT+GGG - chr7_4:8969259-8969278 Msa1139000:intron 50.0%
TGCCAAAACGGCTAGCATTG+GGG + chr7_4:8969288-8969307 None:intergenic 50.0%
CTGCCAAAACGGCTAGCATT+GGG + chr7_4:8969289-8969308 None:intergenic 50.0%
ACTGCCAAAACGGCTAGCAT+TGG + chr7_4:8969290-8969309 None:intergenic 50.0%
!! CTAGCCGTTTTGGCAGTCAT+CGG - chr7_4:8969293-8969312 Msa1139000:intron 50.0%
CCATCCGATGACTGCCAAAA+CGG + chr7_4:8969300-8969319 None:intergenic 50.0%
GCATTTGCACCAAAGCTAGC+TGG + chr7_4:8969337-8969356 None:intergenic 50.0%
GGAGGCTTCAACACTGATCT+TGG + chr7_4:8969365-8969384 None:intergenic 50.0%
! GATCAGTGTTGAAGCCTCCT+TGG - chr7_4:8969366-8969385 Msa1139000:intron 50.0%
AATGATAGCTCCAGCCAAGG+AGG + chr7_4:8969383-8969402 None:intergenic 50.0%
TCCTTGGCTGGAGCTATCAT+TGG - chr7_4:8969382-8969401 Msa1139000:intron 50.0%
ACCAATGATAGCTCCAGCCA+AGG + chr7_4:8969386-8969405 None:intergenic 50.0%
GGCTGGAGCTATCATTGGTA+AGG - chr7_4:8969387-8969406 Msa1139000:intron 50.0%
GGAGCTATCATTGGTAAGGG+TGG - chr7_4:8969391-8969410 Msa1139000:intron 50.0%
GGATGCAAGCAACATGGTGA+AGG - chr7_4:8969525-8969544 Msa1139000:intron 50.0%
AGGTGGTGCAGACATTTGCA+GGG + chr7_4:8969563-8969582 None:intergenic 50.0%
TAGGTGGTGCAGACATTTGC+AGG + chr7_4:8969564-8969583 None:intergenic 50.0%
! GCGCCTTGGTTTGAATTAGG+TGG + chr7_4:8969580-8969599 None:intergenic 50.0%
!! TTGCTCCTTAGGGTACTGAC+AGG - chr7_4:8969817-8969836 Msa1139000:intron 50.0%
CAGAACACTACTGCTGCTAC+GGG + chr7_4:8969962-8969981 None:intergenic 50.0%
!!! AAGAGGGGTTTTGAAGGCGG+TGG + chr7_4:8965891-8965910 None:intergenic 55.0%
GCAAGCACCCAGACACTTCT+AGG + chr7_4:8968418-8968437 None:intergenic 55.0%
! GAAGTGTCTGGGTGCTTGCT+AGG - chr7_4:8968419-8968438 Msa1139000:intron 55.0%
! AGCACTTCTGGCTGCCCATT+TGG - chr7_4:8968962-8968981 Msa1139000:intron 55.0%
! GGAACATTTCTGGGTGCAGG+AGG + chr7_4:8969067-8969086 None:intergenic 55.0%
! GCTGGAACATTTCTGGGTGC+AGG + chr7_4:8969070-8969089 None:intergenic 55.0%
CGTGGGGCTGGAACATTTCT+GGG + chr7_4:8969076-8969095 None:intergenic 55.0%
TCGTGGGGCTGGAACATTTC+TGG + chr7_4:8969077-8969096 None:intergenic 55.0%
TGGGCGCATGTGCATTTCGT+GGG + chr7_4:8969093-8969112 None:intergenic 55.0%
TTGGGCGCATGTGCATTTCG+TGG + chr7_4:8969094-8969113 None:intergenic 55.0%
CGAAATGCACATGCGCCCAA+TGG - chr7_4:8969094-8969113 Msa1139000:CDS 55.0%
GCAGATGGCGCAGAACCATT+GGG + chr7_4:8969112-8969131 None:intergenic 55.0%
AGCAGATGGCGCAGAACCAT+TGG + chr7_4:8969113-8969132 None:intergenic 55.0%
GTCATTTCGCCCACGGAGAA+TGG - chr7_4:8969194-8969213 Msa1139000:intron 55.0%
! CCAAAACGGCTAGCATTGGG+GGG + chr7_4:8969286-8969305 None:intergenic 55.0%
! GCCAAAACGGCTAGCATTGG+GGG + chr7_4:8969287-8969306 None:intergenic 55.0%
!! CCGTTTTGGCAGTCATCGGA+TGG - chr7_4:8969297-8969316 Msa1139000:intron 55.0%
AAGCTAGCTGGAACAGGAGG+AGG + chr7_4:8969325-8969344 None:intergenic 55.0%
CCAAAGCTAGCTGGAACAGG+AGG + chr7_4:8969328-8969347 None:intergenic 55.0%
! CCTCCTGTTCCAGCTAGCTT+TGG - chr7_4:8969325-8969344 Msa1139000:intron 55.0%
GCACCAAAGCTAGCTGGAAC+AGG + chr7_4:8969331-8969350 None:intergenic 55.0%
! AGTGTTGAAGCCTCCTTGGC+TGG - chr7_4:8969370-8969389 Msa1139000:intron 55.0%
! GGGGCGCCTTGGTTTGAATT+AGG + chr7_4:8969583-8969602 None:intergenic 55.0%
! AATTCAAACCAAGGCGCCCC+TGG - chr7_4:8969583-8969602 Msa1139000:intron 55.0%
! ATTCAAACCAAGGCGCCCCT+GGG - chr7_4:8969584-8969603 Msa1139000:intron 55.0%
TGTTTCCATGATGGCCCCCA+GGG + chr7_4:8969624-8969643 None:intergenic 55.0%
TTGTTTCCATGATGGCCCCC+AGG + chr7_4:8969625-8969644 None:intergenic 55.0%
GACAGTGCACCGCCTCATTA+AGG + chr7_4:8969753-8969772 None:intergenic 55.0%
GTGCACTGTCGTGTCAGACA+GGG - chr7_4:8969763-8969782 Msa1139000:intron 55.0%
GCATGTGCATTTCGTGGGGC+TGG + chr7_4:8969088-8969107 None:intergenic 60.0%
GGGCGCATGTGCATTTCGTG+GGG + chr7_4:8969092-8969111 None:intergenic 60.0%
GCCCACGGAGAATGGGAACT+TGG - chr7_4:8969202-8969221 Msa1139000:intron 60.0%
CATTGGGGGGTCCCATGTGA+CGG + chr7_4:8969273-8969292 None:intergenic 60.0%
! CCCCCCAATGCTAGCCGTTT+TGG - chr7_4:8969283-8969302 Msa1139000:intron 60.0%
! TTCAAACCAAGGCGCCCCTG+GGG - chr7_4:8969585-8969604 Msa1139000:intron 60.0%
GTTTCCATGATGGCCCCCAG+GGG + chr7_4:8969623-8969642 None:intergenic 60.0%
GGTGCACTGTCGTGTCAGAC+AGG - chr7_4:8969762-8969781 Msa1139000:intron 60.0%
! TCAAACCAAGGCGCCCCTGG+GGG - chr7_4:8969586-8969605 Msa1139000:intron 65.0%
!! CTGGGTGCAGGAGGTGCTGC+AGG + chr7_4:8969058-8969077 None:intergenic 70.0%
GGCGCCATGATGGCCCCCAG+GGG + chr7_4:8969602-8969621 None:intergenic 75.0%
GGGCGCCATGATGGCCCCCA+GGG + chr7_4:8969603-8969622 None:intergenic 75.0%
GGGGCCATCATGGCGCCCCT+GGG - chr7_4:8969605-8969624 Msa1139000:intron 75.0%
GGGCCATCATGGCGCCCCTG+GGG - chr7_4:8969606-8969625 Msa1139000:intron 75.0%
GGCCATCATGGCGCCCCTGG+GGG - chr7_4:8969607-8969626 Msa1139000:intron 75.0%
!!! GATGGCCCCCAGGGGCGCCT+TGG + chr7_4:8969594-8969613 None:intergenic 80.0%
! GGCGCCCCTGGGGGCCATCA+TGG - chr7_4:8969595-8969614 Msa1139000:intron 80.0%
!! GGGGCGCCATGATGGCCCCC+AGG + chr7_4:8969604-8969623 None:intergenic 80.0%
! GGGGGCCATCATGGCGCCCC+TGG - chr7_4:8969604-8969623 Msa1139000:intron 80.0%
!!! GGCCCCCAGGGGCGCCATGA+TGG + chr7_4:8969612-8969631 None:intergenic 80.0%
! GGCGCCCCTGGGGGCCATCA+TGG - chr7_4:8969595-8969614 Msa1139000:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 8965834 8970069 8965834 ID=Msa1139000;Name=Msa1139000
chr7_4 mRNA 8965834 8970069 8965834 ID=Msa1139000-mRNA-1;Parent=Msa1139000;Name=Msa1139000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|3|328|303
chr7_4 exon 8965834 8966939 8965834 ID=Msa1139000-mRNA-1:exon:2363;Parent=Msa1139000-mRNA-1
chr7_4 exon 8969072 8969132 8969072 ID=Msa1139000-mRNA-1:exon:2362;Parent=Msa1139000-mRNA-1
chr7_4 exon 8969860 8970069 8969860 ID=Msa1139000-mRNA-1:exon:2361;Parent=Msa1139000-mRNA-1
chr7_4 five_prime_UTR 8969933 8970069 8969933 ID=Msa1139000-mRNA-1:five_prime_utr;Parent=Msa1139000-mRNA-1
chr7_4 CDS 8969860 8969932 8969860 ID=Msa1139000-mRNA-1:cds;Parent=Msa1139000-mRNA-1
chr7_4 CDS 8969072 8969132 8969072 ID=Msa1139000-mRNA-1:cds;Parent=Msa1139000-mRNA-1
chr7_4 CDS 8966162 8966939 8966162 ID=Msa1139000-mRNA-1:cds;Parent=Msa1139000-mRNA-1
chr7_4 three_prime_UTR 8965834 8966161 8965834 ID=Msa1139000-mRNA-1:three_prime_utr;Parent=Msa1139000-mRNA-1
Gene Sequence

>Msa1139000

ATGGATATGCGCAAGAGAGGAAGACCCGAACATGGATTCAACAACAATGGCGGATTCAAGAAATCCAGACATGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGCGGTTATAATGCTGTTTCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTCCAGCCCCACGAAATGCACATGCGCCCAATGGTTCTGCGCCATCTGCTGTTAAAAGCCGCATATGCAGCAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGTCATTTCGCCCACGGAGAATGGGAACTTGGTAAGCCTGTAGCTCCATCGTTTGATGATCACCGTCACAATGGTCACCGTCACATGGGACCCCCCAATGCTAGCCGTTTTGGCAGTCATCGGATGGAGCCTCCTCCTGTTCCAGCTAGCTTTGGTGCAAATGCCACTGCCAAGATCAGTGTTGAAGCCTCCTTGGCTGGAGCTATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGTCAAACTGGTGCCAAACTTTCAATTCGAGATCATGAAGACCCAAATCTGAGAAACATTGAACTTGAGGGAACATTTGAACAAATTAAGGATGCAAGCAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAATTCAAACCAAGGCGCCCCTGGGGGCCATCATGGCGCCCCTGGGGGCCATCATGGAAACAACTTGAAAACAAAACTCTGTGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGAATTGCGTAAATGA

Protein sequence

>Msa1139000

MDMRKRGRPEHGFNNNGGFKKSRHEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAVSQMMNLTPAAPPAPRNVPAPRNAHAPNGSAPSAVKSRICSKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRHNGHRHMGPPNASRFGSHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEDPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPNSNQGAPGGHHGAPGGHHGNNLKTKLCENFAKGSCTFGERCHFAHGAAELRK*