AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162550 MtrunA17_Chr7g0258611 96.040 303 10 2 1 303 1 301 0.0 589
Msa1162550 MtrunA17_Chr1g0175201 71.895 306 67 9 1 303 1 290 1.11e-139 396
Msa1162550 MtrunA17_Chr1g0213721 59.542 262 91 7 46 303 5 255 1.59e-99 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162550 AT3G12130.1 52.273 308 78 6 1 303 1 244 3.62e-90 269
Msa1162550 AT5G06770.6 52.404 208 83 8 103 303 16 214 6.44e-57 183
Msa1162550 AT5G06770.6 73.770 61 16 0 25 85 5 65 1.11e-25 102
Msa1162550 AT5G06770.1 52.404 208 83 8 103 303 38 236 1.28e-56 183
Msa1162550 AT5G06770.1 70.115 87 24 1 1 85 1 87 3.95e-36 130
Msa1162550 AT5G06770.3 51.741 201 81 8 110 303 18 209 3.76e-53 173
Msa1162550 AT5G06770.3 62.791 43 16 0 43 85 18 60 2.57e-12 65.5
Msa1162550 AT5G06770.2 51.741 201 81 8 110 303 18 209 3.76e-53 173
Msa1162550 AT5G06770.2 62.791 43 16 0 43 85 18 60 2.57e-12 65.5
Msa1162550 AT5G06770.4 51.741 201 81 8 110 303 18 209 3.76e-53 173
Msa1162550 AT5G06770.4 62.791 43 16 0 43 85 18 60 2.57e-12 65.5
Msa1162550 AT3G12130.2 58.235 170 56 3 149 303 3 172 1.56e-52 170
Msa1162550 AT5G06770.5 60.000 150 52 5 155 303 22 164 1.01e-49 163

Find 119 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTGGGGCTGGAACATTTC+TGG 0.073478 7_4:-53317462 None:intergenic
AAGCTAATGTTGCTATTTAA+AGG 0.172257 7_4:-53318260 None:intergenic
AGTTCAATGTTTCTCAGATT+TGG 0.216072 7_4:-53317866 None:intergenic
GCAAAAGGATCTTGCACTTT+TGG 0.239220 7_4:+53318061 Msa1162550:CDS
ACTGCTGAAGGCTGCAAATT+TGG 0.247553 7_4:+53317551 Msa1162550:CDS
GGGAACATTTGAACAAATTA+AGG 0.249250 7_4:+53317892 Msa1162550:CDS
CACTTCTTGCACCATGTTCC+TGG 0.251613 7_4:+53317383 Msa1162550:CDS
GGGGCGCCTTGGTTTGAATT+AGG 0.279247 7_4:-53317968 None:intergenic
ATTGTTGTGCATTGCTCCTT+AGG 0.286515 7_4:+53318194 Msa1162550:three_prime_UTR
TTTCTTCCTCCGCTAGGGTT+AGG 0.294576 7_4:+53314317 Msa1162550:five_prime_UTR
GTTCAATGTTTCTCAGATTT+GGG 0.294737 7_4:-53317865 None:intergenic
CGTGGGGCTGGAACATTTCT+GGG 0.304605 7_4:-53317461 None:intergenic
AGCACTTCTGGCTGCCCATT+TGG 0.307249 7_4:+53317350 Msa1162550:intron
ATGATCTCGAATTGAAAGTT+TGG 0.321235 7_4:-53317837 None:intergenic
TAGGTGGTGCAGACATTTGC+AGG 0.328616 7_4:-53317949 None:intergenic
CAATCTGATGAGGGAGATAA+TGG 0.329589 7_4:-53318315 None:intergenic
CTGCCAAAACGGCCAGCATT+GGG 0.346406 7_4:-53317674 None:intergenic
GGGGCCATCATGGCGCCCCT+GGG 0.351234 7_4:+53317993 Msa1162550:CDS
CCTCCTGTTCCAGCTAGCTT+TGG 0.360587 7_4:+53317713 Msa1162550:CDS
AAGGCGGTGGCTGTGATAAA+AGG 0.361237 7_4:-53314277 None:intergenic
CAGGTGTTAGATTCATCATC+TGG 0.374375 7_4:-53317424 None:intergenic
TTCTTCCTCCGCTAGGGTTA+GGG 0.374608 7_4:+53314318 Msa1162550:five_prime_UTR
AATTCAAACCAAGGCGCCCC+TGG 0.376150 7_4:+53317971 Msa1162550:CDS
ATTGTTGTTGAATCCATGTT+CGG 0.378655 7_4:-53314398 None:intergenic
GTCATTTCGCCCACGGAGAA+TGG 0.389283 7_4:+53317582 Msa1162550:CDS
AGTGTTGAAGCCTCCTTGGC+TGG 0.405561 7_4:+53317758 Msa1162550:CDS
GGCTGGAGCTATCATTGGTA+AGG 0.406355 7_4:+53317775 Msa1162550:CDS
GCTTCCTACACCAGTTGATA+AGG 0.410010 7_4:-53315181 None:intergenic
TGGGCGCATGTGCATTTCGT+GGG 0.412329 7_4:-53317478 None:intergenic
TTGTTGTTGAATCCATGTTC+GGG 0.412697 7_4:-53314397 None:intergenic
AAACAGATCTGTCGTCAAAC+TGG 0.418288 7_4:+53317812 Msa1162550:CDS
GGAGGCTTCAACACTGATCT+TGG 0.422971 7_4:-53317750 None:intergenic
ACTGCCAAAACGGCCAGCAT+TGG 0.424303 7_4:-53317675 None:intergenic
AGCAGATGGCGCAGAACCAT+TGG 0.426240 7_4:-53317498 None:intergenic
GGCCATCATGGCGCCCCTGG+GGG 0.431404 7_4:+53317995 Msa1162550:CDS
AAGTGGCAGCTCTCACCAAA+TGG 0.432857 7_4:-53317365 None:intergenic
GCTGGAACATTTCTGGGTGC+AGG 0.442312 7_4:-53317455 None:intergenic
GCAGATGGCGCAGAACCATT+GGG 0.447775 7_4:-53317497 None:intergenic
CTGGGTGCAGGAGGTGCTGC+AGG 0.454430 7_4:-53317443 None:intergenic
GCACCAAAGCTAGCTGGAAC+AGG 0.460612 7_4:-53317716 None:intergenic
GATCAGTGTTGAAGCCTCCT+TGG 0.462907 7_4:+53317754 Msa1162550:CDS
TCCTCTCTTGCGCATATCCA+TGG 0.463127 7_4:-53314371 None:intergenic
CAACACCAAATTCATAAAAC+AGG 0.465881 7_4:-53318404 None:intergenic
TTGTTGTGCATTGCTCCTTA+GGG 0.470128 7_4:+53318195 Msa1162550:three_prime_UTR
TCATTTCGCCCACGGAGAAT+GGG 0.473005 7_4:+53317583 Msa1162550:CDS
GCATGTGCATTTCGTGGGGC+TGG 0.479969 7_4:-53317473 None:intergenic
TTGGGCGCATGTGCATTTCG+TGG 0.481654 7_4:-53317479 None:intergenic
GAAATGGAGTCCTTATCAAC+TGG 0.481779 7_4:+53315171 Msa1162550:intron
CCATCCGATGACTGCCAAAA+CGG 0.482989 7_4:-53317685 None:intergenic
ATTCAAACCAAGGCGCCCCT+GGG 0.483309 7_4:+53317972 Msa1162550:CDS
GGTGCACTGTCGTGTCAGAC+AGG 0.483317 7_4:+53318150 Msa1162550:three_prime_UTR
TCCTTGGCTGGAGCTATCAT+TGG 0.488960 7_4:+53317770 Msa1162550:CDS
GCCCACGGAGAATGGGAACT+TGG 0.492658 7_4:+53317590 Msa1162550:CDS
TCATCAAATGATGGAGCTAC+AGG 0.495349 7_4:-53317617 None:intergenic
CTGAGAAACATTGAACTTGA+GGG 0.498316 7_4:+53317872 Msa1162550:CDS
ACAGAACACTACCGCTGCTA+CGG 0.503200 7_4:-53318348 None:intergenic
GCATTTGCACCAAAGCTAGC+TGG 0.505722 7_4:-53317722 None:intergenic
CGGAGGAAGAAAAGAAAAGA+GGG 0.510484 7_4:-53314306 None:intergenic
ATGAAAATCTTACCTTAATG+AGG 0.513346 7_4:+53318126 Msa1162550:exon
AAGCTAGCTGGAACAGGAGG+AGG 0.517450 7_4:-53317710 None:intergenic
GCCAAAACGGCCAGCATTGG+GGG 0.527237 7_4:-53317672 None:intergenic
TCTGAGAAACATTGAACTTG+AGG 0.528852 7_4:+53317871 Msa1162550:CDS
AGTGGCAGCTCTCACCAAAT+GGG 0.532140 7_4:-53317364 None:intergenic
CAGAACACTACCGCTGCTAC+GGG 0.536221 7_4:-53318347 None:intergenic
CCCTACACTGAACTTATCAT+AGG 0.538334 7_4:+53318380 Msa1162550:three_prime_UTR
CATTATAACCGCCAGGAACA+TGG 0.547838 7_4:-53317394 None:intergenic
GCGCCTTGGTTTGAATTAGG+TGG 0.551052 7_4:-53317965 None:intergenic
TGCCAAAACGGCCAGCATTG+GGG 0.551878 7_4:-53317673 None:intergenic
CAAGATTCGATCTCGATCCA+TGG 0.552952 7_4:+53314354 Msa1162550:exon
TCACAATGGTCACCGTCACA+TGG 0.555494 7_4:+53317646 Msa1162550:CDS
CCTATGATAAGTTCAGTGTA+GGG 0.556882 7_4:-53318380 None:intergenic
TTCAACACTGATCTTGGCAG+TGG 0.556993 7_4:-53317744 None:intergenic
GGAACATTTCTGGGTGCAGG+AGG 0.557375 7_4:-53317452 None:intergenic
ACCAAGTTCCCATTCTCCGT+GGG 0.571356 7_4:-53317591 None:intergenic
GACAAATGTCATTTCGCCCA+CGG 0.574168 7_4:+53317575 Msa1162550:CDS
GGAGCTATCATTGGTAAGGG+TGG 0.574888 7_4:+53317779 Msa1162550:CDS
GAGTCCTTATCAACTGGTGT+AGG 0.575007 7_4:+53315177 Msa1162550:CDS
GCGGAGGAAGAAAAGAAAAG+AGG 0.576822 7_4:-53314307 None:intergenic
CGAAATGCACATGCGCCCAA+TGG 0.577209 7_4:+53317482 Msa1162550:CDS
TATTAAACTTGCTGCATATG+CGG 0.578734 7_4:-53317529 None:intergenic
GCTGGAGCTATCATTGGTAA+GGG 0.579604 7_4:+53317776 Msa1162550:CDS
TACCAAGTTCCCATTCTCCG+TGG 0.580757 7_4:-53317592 None:intergenic
CAGGAACATGGTGCAAGAAG+TGG 0.580928 7_4:-53317382 None:intergenic
TTCAAACCAAGGCGCCCCTG+GGG 0.582988 7_4:+53317973 Msa1162550:CDS
ACCTATGATAAGTTCAGTGT+AGG 0.583042 7_4:-53318381 None:intergenic
GGATGCAAGCAACATGGTGA+AGG 0.586493 7_4:+53317913 Msa1162550:CDS
TGACGGTGATCATCAAATGA+TGG 0.598806 7_4:-53317626 None:intergenic
ACCAATGATAGCTCCAGCCA+AGG 0.601213 7_4:-53317771 None:intergenic
AGCAAGTTTAATACTGCTGA+AGG 0.610803 7_4:+53317539 Msa1162550:CDS
CACAATGGTCACCGTCACAT+GGG 0.612054 7_4:+53317647 Msa1162550:CDS
GAACATGGATTCAACAACAA+TGG 0.613103 7_4:+53314400 Msa1162550:CDS
GTGCACTGTCGTGTCAGACA+GGG 0.614557 7_4:+53318151 Msa1162550:three_prime_UTR
GAAACAGCATTATAACCGCC+AGG 0.616377 7_4:-53317401 None:intergenic
TAAGTCCTGTCAGTACCCTA+AGG 0.617456 7_4:-53318210 None:intergenic
TACAGTCAACAATCTGATGA+GGG 0.620247 7_4:-53318324 None:intergenic
TCCATGGATATGCGCAAGAG+AGG 0.620448 7_4:+53314370 Msa1162550:exon
CCAAAGCTAGCTGGAACAGG+AGG 0.620733 7_4:-53317713 None:intergenic
AGGTGTTAGATTCATCATCT+GGG 0.623445 7_4:-53317423 None:intergenic
TTGCTCCTTAGGGTACTGAC+AGG 0.626554 7_4:+53318205 Msa1162550:three_prime_UTR
GTACAGTCAACAATCTGATG+AGG 0.628204 7_4:-53318325 None:intergenic
TCGACAGAAAGGATGGCAGA+AGG 0.629208 7_4:-53318450 None:intergenic
TTTGATGATCACCGTCACAA+TGG 0.633364 7_4:+53317632 Msa1162550:CDS
CCAAAACGGCCAGCATTGGG+GGG 0.633415 7_4:-53317671 None:intergenic
AAAATCTTACCTTAATGAGG+CGG 0.634934 7_4:+53318129 Msa1162550:exon
AAGAGAGGAAGACCCGAACA+TGG 0.639026 7_4:+53314385 Msa1162550:CDS
AATTAAGGATGCAAGCAACA+TGG 0.639069 7_4:+53317907 Msa1162550:CDS
TCAAACCAAGGCGCCCCTGG+GGG 0.642892 7_4:+53317974 Msa1162550:CDS
GGGCGCATGTGCATTTCGTG+GGG 0.653124 7_4:-53317477 None:intergenic
AGGTGGTGCAGACATTTGCA+GGG 0.654364 7_4:-53317948 None:intergenic
GCACCACCTAATTCAAACCA+AGG 0.655471 7_4:+53317962 Msa1162550:CDS
GGAGGAAGAAAAGAAAAGAG+GGG 0.658122 7_4:-53314305 None:intergenic
TAAAACCCTAACCCTAGCGG+AGG 0.665514 7_4:-53314323 None:intergenic
TTCTTGCACCATGTTCCTGG+CGG 0.668994 7_4:+53317386 Msa1162550:CDS
GTTGACTGTACCCGTAGCAG+CGG 0.670030 7_4:+53318337 Msa1162550:three_prime_UTR
CATGGATTCAACAACAATGG+CGG 0.674602 7_4:+53314403 Msa1162550:CDS
AATGATAGCTCCAGCCAAGG+AGG 0.680423 7_4:-53317768 None:intergenic
GGATTCAAGAAATCCAGACA+TGG 0.691625 7_4:+53314424 Msa1162550:CDS
GAGTAAAACCCTAACCCTAG+CGG 0.695995 7_4:-53314326 None:intergenic
TGTGACGGTGACCATTGTGA+CGG 0.721866 7_4:-53317643 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAAAAATTTAAATT+TGG + chr7_4:53316688-53316707 Msa1162550:intron 0.0%
!! TGTATTATTATTATTGTTAT+TGG + chr7_4:53314587-53314606 Msa1162550:intron 10.0%
!!! AGTTAATTTCCAATTTTTAT+CGG + chr7_4:53314630-53314649 Msa1162550:intron 15.0%
!!! ACACAATTTTAAAACTTTTA+GGG - chr7_4:53314813-53314832 None:intergenic 15.0%
!! TTAAAATATATACAGACTTA+GGG - chr7_4:53315065-53315084 None:intergenic 15.0%
!!! TTTAAAATATATACAGACTT+AGG - chr7_4:53315066-53315085 None:intergenic 15.0%
!! TACTTATAATTTATTTAGAC+AGG - chr7_4:53315249-53315268 None:intergenic 15.0%
!! AAATTGTGTTATAATTAACT+CGG + chr7_4:53315385-53315404 Msa1162550:intron 15.0%
!!! TGATGTTAAAATTTTTAAAG+TGG - chr7_4:53315599-53315618 None:intergenic 15.0%
!! AAACTAATAATTTATGTGTA+CGG - chr7_4:53315736-53315755 None:intergenic 15.0%
!! TGCTTTATAATTATATGAAA+AGG - chr7_4:53316136-53316155 None:intergenic 15.0%
!!! TTTTCATATAATTATAAAGC+AGG + chr7_4:53316135-53316154 Msa1162550:intron 15.0%
!! AATTCAGTTGAAATATAAAA+TGG + chr7_4:53316554-53316573 Msa1162550:intron 15.0%
!! ATTCAGTTGAAATATAAAAT+GGG + chr7_4:53316555-53316574 Msa1162550:intron 15.0%
!!! ATATATTTGTTTTTTGTCAT+TGG + chr7_4:53316753-53316772 Msa1162550:intron 15.0%
!!! TAATGGATTTTCATAATAAA+GGG - chr7_4:53318301-53318320 None:intergenic 15.0%
!!! ATAATGGATTTTCATAATAA+AGG - chr7_4:53318302-53318321 None:intergenic 15.0%
!! CTAAAAATCATACAAATTCA+TGG - chr7_4:53314513-53314532 None:intergenic 20.0%
!!! CATGAATTTGTATGATTTTT+AGG + chr7_4:53314511-53314530 Msa1162550:intron 20.0%
!!! GAAATTTTACCGATAAAAAT+TGG - chr7_4:53314642-53314661 None:intergenic 20.0%
!! TGAAATTATCGACAATTATA+AGG - chr7_4:53314674-53314693 None:intergenic 20.0%
!!! CACAGCAAATTTTAAAAAAT+TGG - chr7_4:53314763-53314782 None:intergenic 20.0%
!!! GACACAATTTTAAAACTTTT+AGG - chr7_4:53314814-53314833 None:intergenic 20.0%
!!! TTTTTGTATAAGCTATTTCT+TGG + chr7_4:53314960-53314979 Msa1162550:intron 20.0%
!!! ATAATGTTTTGTAACAGAAA+TGG + chr7_4:53315155-53315174 Msa1162550:intron 20.0%
!! ATAAACAATAAAATCCACTA+CGG - chr7_4:53315632-53315651 None:intergenic 20.0%
!!! AGAAAATAGAGACATTTTTA+TGG + chr7_4:53315763-53315782 Msa1162550:intron 20.0%
!! ATAAAAGACATGTGTAATAT+GGG - chr7_4:53316989-53317008 None:intergenic 20.0%
!! TATAAAAGACATGTGTAATA+TGG - chr7_4:53316990-53317009 None:intergenic 20.0%
!! ATATCTTGTCAAATAATTCA+TGG + chr7_4:53317217-53317236 Msa1162550:intron 20.0%
! AATTGTCGATAATTTCAGAT+TGG + chr7_4:53314677-53314696 Msa1162550:intron 25.0%
! GTAAGAGATTAATAAATGAG+AGG + chr7_4:53315112-53315131 Msa1162550:intron 25.0%
! AGATTATAACCTGAAAAACT+TGG - chr7_4:53315223-53315242 None:intergenic 25.0%
!! GTATATGAAGCTTTTATTAC+AGG + chr7_4:53315407-53315426 Msa1162550:intron 25.0%
! TAAACAAGTAAACACATTAG+TGG + chr7_4:53315449-53315468 Msa1162550:intron 25.0%
! AATGGTCAATTTATCATTGA+TGG - chr7_4:53315538-53315557 None:intergenic 25.0%
! GATATGAACATGAGTAAAAA+TGG - chr7_4:53315556-53315575 None:intergenic 25.0%
! TAAACAATAAAATCCACTAC+GGG - chr7_4:53315631-53315650 None:intergenic 25.0%
!! AAGTTCAATTCATGTTACTT+AGG - chr7_4:53315684-53315703 None:intergenic 25.0%
!! TAACATGAATTGAACTTGTT+TGG + chr7_4:53315687-53315706 Msa1162550:intron 25.0%
!! TTAGAATTGTTTCTTGTTCA+AGG - chr7_4:53315800-53315819 None:intergenic 25.0%
!! CTTCGATAAGTAATCAATTT+TGG + chr7_4:53316040-53316059 Msa1162550:intron 25.0%
!!! ATAAGTAATCAATTTTGGTG+AGG + chr7_4:53316045-53316064 Msa1162550:intron 25.0%
!! AGAAAAATTGATTTCTACAG+AGG - chr7_4:53316085-53316104 None:intergenic 25.0%
!!! TCTTTTACATTTTTTGCCTT+TGG + chr7_4:53316102-53316121 Msa1162550:intron 25.0%
! AATTATAAAGCAGGATAAGT+TGG + chr7_4:53316144-53316163 Msa1162550:intron 25.0%
!! AACTTTCATGCGTATATTTT+TGG + chr7_4:53316191-53316210 Msa1162550:intron 25.0%
!!! TACTCAACTTTTCAAGAATT+TGG + chr7_4:53316310-53316329 Msa1162550:intron 25.0%
!!! ATCATTGATTTGATTCAAAC+TGG + chr7_4:53316388-53316407 Msa1162550:intron 25.0%
!!! TCATTGATTTGATTCAAACT+GGG + chr7_4:53316389-53316408 Msa1162550:intron 25.0%
! TTAAAGAACATCTCTAATAG+GGG - chr7_4:53316648-53316667 None:intergenic 25.0%
! GTTAAAGAACATCTCTAATA+GGG - chr7_4:53316649-53316668 None:intergenic 25.0%
! AGTTAAAGAACATCTCTAAT+AGG - chr7_4:53316650-53316669 None:intergenic 25.0%
!! TTACATGCACTATTCTAAAA+TGG + chr7_4:53316923-53316942 Msa1162550:intron 25.0%
! TTAGCTTATTCATATGTATC+TGG + chr7_4:53317067-53317086 Msa1162550:intron 25.0%
! TAGCTTATTCATATGTATCT+GGG + chr7_4:53317068-53317087 Msa1162550:intron 25.0%
!! AGAACAAAGGTGTATTAATT+AGG - chr7_4:53317183-53317202 None:intergenic 25.0%
! TATATATAGAGAGAGAACAA+AGG - chr7_4:53317196-53317215 None:intergenic 25.0%
! ATGAAAATCTTACCTTAATG+AGG + chr7_4:53318126-53318145 Msa1162550:exon 25.0%
!!! AAGCTAATGTTGCTATTTAA+AGG - chr7_4:53318263-53318282 None:intergenic 25.0%
! ATTGTTGTTGAATCCATGTT+CGG - chr7_4:53314401-53314420 None:intergenic 30.0%
AAAAAAAAACGAACCATGTC+TGG - chr7_4:53314440-53314459 None:intergenic 30.0%
! TTGGTCAAATTTTCAGTAGT+TGG + chr7_4:53314696-53314715 Msa1162550:intron 30.0%
! TGGTCAAATTTTCAGTAGTT+GGG + chr7_4:53314697-53314716 Msa1162550:intron 30.0%
ATAAACTGTTTGTCCAAACA+GGG - chr7_4:53314854-53314873 None:intergenic 30.0%
AATAAACTGTTTGTCCAAAC+AGG - chr7_4:53314855-53314874 None:intergenic 30.0%
TACAGGTACAAACTGTTATT+TGG + chr7_4:53315424-53315443 Msa1162550:intron 30.0%
!! CAAAGTGTAGTCTTTTAAGT+AGG - chr7_4:53315489-53315508 None:intergenic 30.0%
! TTATGAACCAACCTTTTGAT+CGG + chr7_4:53315648-53315667 Msa1162550:intron 30.0%
! TGAATTGAACTTGTTTGGTT+CGG + chr7_4:53315692-53315711 Msa1162550:intron 30.0%
TGTTTCTTGTTCAAGGTTTA+TGG - chr7_4:53315793-53315812 None:intergenic 30.0%
AAACAATTCTAATCGATCTC+AGG + chr7_4:53315808-53315827 Msa1162550:intron 30.0%
! ATTCGTCAATTGTTTCTTGA+TGG - chr7_4:53315852-53315871 None:intergenic 30.0%
CCATTAGAGAAACAATAAGA+GGG - chr7_4:53315880-53315899 None:intergenic 30.0%
ACCATTAGAGAAACAATAAG+AGG - chr7_4:53315881-53315900 None:intergenic 30.0%
AGACGATAAAATGGCAATAA+TGG - chr7_4:53316234-53316253 None:intergenic 30.0%
!!! TATTGCCATTTTATCGTCTA+CGG + chr7_4:53316235-53316254 Msa1162550:intron 30.0%
! TTTTGTTCCGTATGAAATTC+TGG + chr7_4:53316275-53316294 Msa1162550:intron 30.0%
! GGATTTTCCAGAATTTCATA+CGG - chr7_4:53316285-53316304 None:intergenic 30.0%
! ATGAAATTCTGGAAAATCCT+AGG + chr7_4:53316286-53316305 Msa1162550:intron 30.0%
TTACAAGTCAAAATGTGTGA+AGG + chr7_4:53316347-53316366 Msa1162550:intron 30.0%
TAAAGAACATCTCTAATAGG+GGG - chr7_4:53316647-53316666 None:intergenic 30.0%
!!! GTGAAGTCTTTTTAGAATGT+TGG + chr7_4:53316780-53316799 Msa1162550:intron 30.0%
!! TAATATGTAGAGTGTCGTTT+GGG + chr7_4:53316856-53316875 Msa1162550:intron 30.0%
! CACATGTCTTTTATACTGTT+TGG + chr7_4:53316995-53317014 Msa1162550:intron 30.0%
AGCTTATTCATATGTATCTG+GGG + chr7_4:53317069-53317088 Msa1162550:intron 30.0%
TGTCAAATAATTCATGGATC+TGG + chr7_4:53317223-53317242 Msa1162550:intron 30.0%
GTCAAATAATTCATGGATCT+GGG + chr7_4:53317224-53317243 Msa1162550:intron 30.0%
!! TATTAAACTTGCTGCATATG+CGG - chr7_4:53317532-53317551 None:intergenic 30.0%
ATGATCTCGAATTGAAAGTT+TGG - chr7_4:53317840-53317859 None:intergenic 30.0%
GTTCAATGTTTCTCAGATTT+GGG - chr7_4:53317868-53317887 None:intergenic 30.0%
AGTTCAATGTTTCTCAGATT+TGG - chr7_4:53317869-53317888 None:intergenic 30.0%
GGGAACATTTGAACAAATTA+AGG + chr7_4:53317892-53317911 Msa1162550:CDS 30.0%
!!! TTTTCAAGTTGTTTCCATGA+TGG - chr7_4:53318021-53318040 None:intergenic 30.0%
AAAATCTTACCTTAATGAGG+CGG + chr7_4:53318129-53318148 Msa1162550:exon 30.0%
! TAGGTCCTGTTTTATGAATT+TGG + chr7_4:53318399-53318418 Msa1162550:three_prime_UTR 30.0%
CAACACCAAATTCATAAAAC+AGG - chr7_4:53318407-53318426 None:intergenic 30.0%
!!! GTTTTATGAATTTGGTGTTG+CGG + chr7_4:53318407-53318426 Msa1162550:three_prime_UTR 30.0%
!! AAAGAAAAGAGGGGTTTTGA+AGG - chr7_4:53314299-53314318 None:intergenic 35.0%
! TTGTTGTTGAATCCATGTTC+GGG - chr7_4:53314400-53314419 None:intergenic 35.0%
GAACATGGATTCAACAACAA+TGG + chr7_4:53314400-53314419 Msa1162550:CDS 35.0%
! TTGGTGTGTTTCTGTGTAAT+TGG + chr7_4:53314606-53314625 Msa1162550:intron 35.0%
! GGTCAAATTTTCAGTAGTTG+GGG + chr7_4:53314698-53314717 Msa1162550:intron 35.0%
AACCTGAAAAACTTGGTACA+TGG - chr7_4:53315216-53315235 None:intergenic 35.0%
CTTAAAAGACTACACTTTGC+AGG + chr7_4:53315490-53315509 Msa1162550:intron 35.0%
TTAGAGAAACAATAAGAGGG+TGG - chr7_4:53315877-53315896 None:intergenic 35.0%
! CCCTCTTATTGTTTCTCTAA+TGG + chr7_4:53315877-53315896 Msa1162550:intron 35.0%
AGGGATACAGTAAACAATGA+GGG - chr7_4:53315941-53315960 None:intergenic 35.0%
AAGGGATACAGTAAACAATG+AGG - chr7_4:53315942-53315961 None:intergenic 35.0%
GACAGAGCAGAAAAACAAAA+GGG - chr7_4:53315960-53315979 None:intergenic 35.0%
TGACAGAGCAGAAAAACAAA+AGG - chr7_4:53315961-53315980 None:intergenic 35.0%
!! ATCAATTTTGGTGAGGTGAA+TGG + chr7_4:53316052-53316071 Msa1162550:intron 35.0%
!! TCAATTTTGGTGAGGTGAAT+GGG + chr7_4:53316053-53316072 Msa1162550:intron 35.0%
CTTGAAAAGTTGAGTAACCT+AGG - chr7_4:53316306-53316325 None:intergenic 35.0%
GATTTGATTCAAACTGGGTT+AGG + chr7_4:53316394-53316413 Msa1162550:intron 35.0%
TGAACACACGAACATAATCT+AGG + chr7_4:53316457-53316476 Msa1162550:intron 35.0%
!! GTAATATGTAGAGTGTCGTT+TGG + chr7_4:53316855-53316874 Msa1162550:intron 35.0%
AAACATACAGCACGAACATT+TGG - chr7_4:53317021-53317040 None:intergenic 35.0%
GCTTATTCATATGTATCTGG+GGG + chr7_4:53317070-53317089 Msa1162550:intron 35.0%
CTTATTCATATGTATCTGGG+GGG + chr7_4:53317071-53317090 Msa1162550:intron 35.0%
AGCATTTGAGAGTTTATGAC+TGG + chr7_4:53317123-53317142 Msa1162550:intron 35.0%
ATGCAAAGTAGATCTGTGAA+TGG + chr7_4:53317149-53317168 Msa1162550:intron 35.0%
! TTGTATTGATGCTCTTATGC+AGG + chr7_4:53317248-53317267 Msa1162550:intron 35.0%
!!! TTTTTGTTTTGCAGCACTTC+TGG + chr7_4:53317338-53317357 Msa1162550:intron 35.0%
AGGTGTTAGATTCATCATCT+GGG - chr7_4:53317426-53317445 None:intergenic 35.0%
AGCAAGTTTAATACTGCTGA+AGG + chr7_4:53317539-53317558 Msa1162550:CDS 35.0%
TCTGAGAAACATTGAACTTG+AGG + chr7_4:53317871-53317890 Msa1162550:CDS 35.0%
CTGAGAAACATTGAACTTGA+GGG + chr7_4:53317872-53317891 Msa1162550:CDS 35.0%
AATTAAGGATGCAAGCAACA+TGG + chr7_4:53317907-53317926 Msa1162550:CDS 35.0%
! CTGTGTGAGAATTTTGCAAA+AGG + chr7_4:53318046-53318065 Msa1162550:CDS 35.0%
!!! GAAAGATGTCATTTTGCACA+TGG + chr7_4:53318085-53318104 Msa1162550:CDS 35.0%
TACAGTCAACAATCTGATGA+GGG - chr7_4:53318327-53318346 None:intergenic 35.0%
CCTATGATAAGTTCAGTGTA+GGG - chr7_4:53318383-53318402 None:intergenic 35.0%
ACCTATGATAAGTTCAGTGT+AGG - chr7_4:53318384-53318403 None:intergenic 35.0%
GGAGGAAGAAAAGAAAAGAG+GGG - chr7_4:53314308-53314327 None:intergenic 40.0%
CGGAGGAAGAAAAGAAAAGA+GGG - chr7_4:53314309-53314328 None:intergenic 40.0%
! TTTTCTTTTCTTCCTCCGCT+AGG + chr7_4:53314311-53314330 Msa1162550:five_prime_UTR 40.0%
! TTTCTTTTCTTCCTCCGCTA+GGG + chr7_4:53314312-53314331 Msa1162550:five_prime_UTR 40.0%
CATGGATTCAACAACAATGG+CGG + chr7_4:53314403-53314422 Msa1162550:CDS 40.0%
GGATTCAAGAAATCCAGACA+TGG + chr7_4:53314424-53314443 Msa1162550:CDS 40.0%
TGGTAAAAACGAAAGCGAAG+CGG - chr7_4:53314493-53314512 None:intergenic 40.0%
! TTGTGTCACTCTACAAAGCA+AGG + chr7_4:53314827-53314846 Msa1162550:intron 40.0%
! TGTGTCACTCTACAAAGCAA+GGG + chr7_4:53314828-53314847 Msa1162550:intron 40.0%
TCAGATAAGCCAATCCAAAC+AGG + chr7_4:53315039-53315058 Msa1162550:intron 40.0%
GAAATGGAGTCCTTATCAAC+TGG + chr7_4:53315171-53315190 Msa1162550:intron 40.0%
! AGCCATGTACCAAGTTTTTC+AGG + chr7_4:53315211-53315230 Msa1162550:CDS 40.0%
ACACTTTGCAGGACAATAGT+TGG + chr7_4:53315501-53315520 Msa1162550:intron 40.0%
CACTTTGCAGGACAATAGTT+GGG + chr7_4:53315502-53315521 Msa1162550:intron 40.0%
TAGCTTACCGATCAAAAGGT+TGG - chr7_4:53315658-53315677 None:intergenic 40.0%
!!! GGTCTGCAATGTTTTGAAGT+TGG + chr7_4:53315898-53315917 Msa1162550:intron 40.0%
CAGTAAACAATGAGGGAAAG+TGG - chr7_4:53315934-53315953 None:intergenic 40.0%
TGAAAAGGTCAGACAACCAA+AGG - chr7_4:53316121-53316140 None:intergenic 40.0%
AAGCTCCGTAGACGATAAAA+TGG - chr7_4:53316243-53316262 None:intergenic 40.0%
! TCCTCTGTGTTCTTTTCACT+TGG + chr7_4:53316617-53316636 Msa1162550:intron 40.0%
ACCAAGTGAAAAGAACACAG+AGG - chr7_4:53316621-53316640 None:intergenic 40.0%
!! TTAAGTGTCCTAGAAGTGTC+TGG + chr7_4:53316803-53316822 Msa1162550:intron 40.0%
!! TAAGTGTCCTAGAAGTGTCT+GGG + chr7_4:53316804-53316823 Msa1162550:intron 40.0%
GTTGGAAATATGCCAGACAT+TGG + chr7_4:53316891-53316910 Msa1162550:intron 40.0%
TAACAGTTACAGCCAATGTC+TGG - chr7_4:53316906-53316925 None:intergenic 40.0%
TAATATGGGACAGATCTAGC+AGG - chr7_4:53316975-53316994 None:intergenic 40.0%
! GTGCTGTATGTTTTCCTTCA+AGG + chr7_4:53317028-53317047 Msa1162550:intron 40.0%
TATTGATGCTCTTATGCAGG+TGG + chr7_4:53317251-53317270 Msa1162550:intron 40.0%
CAGGTGTTAGATTCATCATC+TGG - chr7_4:53317427-53317446 None:intergenic 40.0%
! TCATCAAATGATGGAGCTAC+AGG - chr7_4:53317620-53317639 None:intergenic 40.0%
TGACGGTGATCATCAAATGA+TGG - chr7_4:53317629-53317648 None:intergenic 40.0%
! TTTGATGATCACCGTCACAA+TGG + chr7_4:53317632-53317651 Msa1162550:CDS 40.0%
AAACAGATCTGTCGTCAAAC+TGG + chr7_4:53317812-53317831 Msa1162550:CDS 40.0%
! GCAAAAGGATCTTGCACTTT+TGG + chr7_4:53318061-53318080 Msa1162550:CDS 40.0%
ATTGTTGTGCATTGCTCCTT+AGG + chr7_4:53318194-53318213 Msa1162550:three_prime_UTR 40.0%
TTGTTGTGCATTGCTCCTTA+GGG + chr7_4:53318195-53318214 Msa1162550:three_prime_UTR 40.0%
CAATCTGATGAGGGAGATAA+TGG - chr7_4:53318318-53318337 None:intergenic 40.0%
GTACAGTCAACAATCTGATG+AGG - chr7_4:53318328-53318347 None:intergenic 40.0%
CCCTACACTGAACTTATCAT+AGG + chr7_4:53318380-53318399 Msa1162550:three_prime_UTR 40.0%
!!! GAAAAGAGGGGTTTTGAAGG+CGG - chr7_4:53314296-53314315 None:intergenic 45.0%
GCGGAGGAAGAAAAGAAAAG+AGG - chr7_4:53314310-53314329 None:intergenic 45.0%
GAGTAAAACCCTAACCCTAG+CGG - chr7_4:53314329-53314348 None:intergenic 45.0%
CAAGATTCGATCTCGATCCA+TGG + chr7_4:53314354-53314373 Msa1162550:exon 45.0%
ATACAGACTTAGGGCCTGTT+TGG - chr7_4:53315056-53315075 None:intergenic 45.0%
GAGTCCTTATCAACTGGTGT+AGG + chr7_4:53315177-53315196 Msa1162550:CDS 45.0%
! GCTTCCTACACCAGTTGATA+AGG - chr7_4:53315184-53315203 None:intergenic 45.0%
GCGATAGCTTACCGATCAAA+AGG - chr7_4:53315662-53315681 None:intergenic 45.0%
!! TGAACTTGTTTGGTTCGGTC+AGG + chr7_4:53315697-53315716 Msa1162550:intron 45.0%
ACTGCATGTGTGTGTACTTG+TGG + chr7_4:53316490-53316509 Msa1162550:intron 45.0%
!! TTTGGGTGTTGGTGTTGTGT+TGG + chr7_4:53316873-53316892 Msa1162550:intron 45.0%
CCAACTTCAAAGGATCACAC+AGG - chr7_4:53316952-53316971 None:intergenic 45.0%
!! CCTGTGTGATCCTTTGAAGT+TGG + chr7_4:53316949-53316968 Msa1162550:intron 45.0%
ATCTAGCAGGCCAACTTCAA+AGG - chr7_4:53316962-53316981 None:intergenic 45.0%
TCCTTCAAGGATCTCAGTGT+TGG + chr7_4:53317041-53317060 Msa1162550:intron 45.0%
TCCAACACTGAGATCCTTGA+AGG - chr7_4:53317045-53317064 None:intergenic 45.0%
TGCTCTTATGCAGGTGGATA+AGG + chr7_4:53317257-53317276 Msa1162550:intron 45.0%
GCTCTTATGCAGGTGGATAA+GGG + chr7_4:53317258-53317277 Msa1162550:intron 45.0%
TTATGCAGGTGGATAAGGGT+GGG + chr7_4:53317262-53317281 Msa1162550:intron 45.0%
CATTATAACCGCCAGGAACA+TGG - chr7_4:53317397-53317416 None:intergenic 45.0%
GAAACAGCATTATAACCGCC+AGG - chr7_4:53317404-53317423 None:intergenic 45.0%
! ATGCGGCTTTTAACAGCAGA+TGG - chr7_4:53317515-53317534 None:intergenic 45.0%
ACTGCTGAAGGCTGCAAATT+TGG + chr7_4:53317551-53317570 Msa1162550:CDS 45.0%
! GACAAATGTCATTTCGCCCA+CGG + chr7_4:53317575-53317594 Msa1162550:CDS 45.0%
TTCAACACTGATCTTGGCAG+TGG - chr7_4:53317747-53317766 None:intergenic 45.0%
GCTGGAGCTATCATTGGTAA+GGG + chr7_4:53317776-53317795 Msa1162550:CDS 45.0%
GCACCACCTAATTCAAACCA+AGG + chr7_4:53317962-53317981 Msa1162550:CDS 45.0%
TAAGTCCTGTCAGTACCCTA+AGG - chr7_4:53318213-53318232 None:intergenic 45.0%
AAGGCGGTGGCTGTGATAAA+AGG - chr7_4:53314280-53314299 None:intergenic 50.0%
TTTCTTCCTCCGCTAGGGTT+AGG + chr7_4:53314317-53314336 Msa1162550:five_prime_UTR 50.0%
TTCTTCCTCCGCTAGGGTTA+GGG + chr7_4:53314318-53314337 Msa1162550:five_prime_UTR 50.0%
TAAAACCCTAACCCTAGCGG+AGG - chr7_4:53314326-53314345 None:intergenic 50.0%
TCCATGGATATGCGCAAGAG+AGG + chr7_4:53314370-53314389 Msa1162550:exon 50.0%
TCCTCTCTTGCGCATATCCA+TGG - chr7_4:53314374-53314393 None:intergenic 50.0%
AAGAGAGGAAGACCCGAACA+TGG + chr7_4:53314385-53314404 Msa1162550:CDS 50.0%
TACAAAGCAAGGGCCCTGTT+TGG + chr7_4:53314838-53314857 Msa1162550:intron 50.0%
GACTTAGGGCCTGTTTGGAT+TGG - chr7_4:53315051-53315070 None:intergenic 50.0%
ATCAAGCTTTCAGCCCGTAG+TGG + chr7_4:53315615-53315634 Msa1162550:intron 50.0%
! AAGTGTCTGGGTGCTTGCTA+GGG + chr7_4:53316816-53316835 Msa1162550:intron 50.0%
!! GTAGAGTGTCGTTTGGGTGT+TGG + chr7_4:53316862-53316881 Msa1162550:intron 50.0%
TGGGGGGACTTACGATATTC+TGG + chr7_4:53317087-53317106 Msa1162550:intron 50.0%
CTTATGCAGGTGGATAAGGG+TGG + chr7_4:53317261-53317280 Msa1162550:intron 50.0%
AGTGGCAGCTCTCACCAAAT+GGG - chr7_4:53317367-53317386 None:intergenic 50.0%
AAGTGGCAGCTCTCACCAAA+TGG - chr7_4:53317368-53317387 None:intergenic 50.0%
CAGGAACATGGTGCAAGAAG+TGG - chr7_4:53317385-53317404 None:intergenic 50.0%
CACTTCTTGCACCATGTTCC+TGG + chr7_4:53317383-53317402 Msa1162550:CDS 50.0%
TTCTTGCACCATGTTCCTGG+CGG + chr7_4:53317386-53317405 Msa1162550:CDS 50.0%
TCATTTCGCCCACGGAGAAT+GGG + chr7_4:53317583-53317602 Msa1162550:CDS 50.0%
ACCAAGTTCCCATTCTCCGT+GGG - chr7_4:53317594-53317613 None:intergenic 50.0%
TACCAAGTTCCCATTCTCCG+TGG - chr7_4:53317595-53317614 None:intergenic 50.0%
TGTGACGGTGACCATTGTGA+CGG - chr7_4:53317646-53317665 None:intergenic 50.0%
TCACAATGGTCACCGTCACA+TGG + chr7_4:53317646-53317665 Msa1162550:CDS 50.0%
CACAATGGTCACCGTCACAT+GGG + chr7_4:53317647-53317666 Msa1162550:CDS 50.0%
CCATCCGATGACTGCCAAAA+CGG - chr7_4:53317688-53317707 None:intergenic 50.0%
GCATTTGCACCAAAGCTAGC+TGG - chr7_4:53317725-53317744 None:intergenic 50.0%
GGAGGCTTCAACACTGATCT+TGG - chr7_4:53317753-53317772 None:intergenic 50.0%
! GATCAGTGTTGAAGCCTCCT+TGG + chr7_4:53317754-53317773 Msa1162550:CDS 50.0%
AATGATAGCTCCAGCCAAGG+AGG - chr7_4:53317771-53317790 None:intergenic 50.0%
TCCTTGGCTGGAGCTATCAT+TGG + chr7_4:53317770-53317789 Msa1162550:CDS 50.0%
ACCAATGATAGCTCCAGCCA+AGG - chr7_4:53317774-53317793 None:intergenic 50.0%
GGCTGGAGCTATCATTGGTA+AGG + chr7_4:53317775-53317794 Msa1162550:CDS 50.0%
GGAGCTATCATTGGTAAGGG+TGG + chr7_4:53317779-53317798 Msa1162550:CDS 50.0%
GGATGCAAGCAACATGGTGA+AGG + chr7_4:53317913-53317932 Msa1162550:CDS 50.0%
AGGTGGTGCAGACATTTGCA+GGG - chr7_4:53317951-53317970 None:intergenic 50.0%
TAGGTGGTGCAGACATTTGC+AGG - chr7_4:53317952-53317971 None:intergenic 50.0%
! GCGCCTTGGTTTGAATTAGG+TGG - chr7_4:53317968-53317987 None:intergenic 50.0%
!! TTGCTCCTTAGGGTACTGAC+AGG + chr7_4:53318205-53318224 Msa1162550:three_prime_UTR 50.0%
ACAGAACACTACCGCTGCTA+CGG - chr7_4:53318351-53318370 None:intergenic 50.0%
!!! AAGAGGGGTTTTGAAGGCGG+TGG - chr7_4:53314293-53314312 None:intergenic 55.0%
GCAAGCACCCAGACACTTCT+AGG - chr7_4:53316814-53316833 None:intergenic 55.0%
! GAAGTGTCTGGGTGCTTGCT+AGG + chr7_4:53316815-53316834 Msa1162550:intron 55.0%
! AGCACTTCTGGCTGCCCATT+TGG + chr7_4:53317350-53317369 Msa1162550:intron 55.0%
! GGAACATTTCTGGGTGCAGG+AGG - chr7_4:53317455-53317474 None:intergenic 55.0%
! GCTGGAACATTTCTGGGTGC+AGG - chr7_4:53317458-53317477 None:intergenic 55.0%
CGTGGGGCTGGAACATTTCT+GGG - chr7_4:53317464-53317483 None:intergenic 55.0%
TCGTGGGGCTGGAACATTTC+TGG - chr7_4:53317465-53317484 None:intergenic 55.0%
TGGGCGCATGTGCATTTCGT+GGG - chr7_4:53317481-53317500 None:intergenic 55.0%
TTGGGCGCATGTGCATTTCG+TGG - chr7_4:53317482-53317501 None:intergenic 55.0%
CGAAATGCACATGCGCCCAA+TGG + chr7_4:53317482-53317501 Msa1162550:CDS 55.0%
GCAGATGGCGCAGAACCATT+GGG - chr7_4:53317500-53317519 None:intergenic 55.0%
AGCAGATGGCGCAGAACCAT+TGG - chr7_4:53317501-53317520 None:intergenic 55.0%
GTCATTTCGCCCACGGAGAA+TGG + chr7_4:53317582-53317601 Msa1162550:CDS 55.0%
TGCCAAAACGGCCAGCATTG+GGG - chr7_4:53317676-53317695 None:intergenic 55.0%
CTGCCAAAACGGCCAGCATT+GGG - chr7_4:53317677-53317696 None:intergenic 55.0%
ACTGCCAAAACGGCCAGCAT+TGG - chr7_4:53317678-53317697 None:intergenic 55.0%
!! CTGGCCGTTTTGGCAGTCAT+CGG + chr7_4:53317681-53317700 Msa1162550:CDS 55.0%
!! CCGTTTTGGCAGTCATCGGA+TGG + chr7_4:53317685-53317704 Msa1162550:CDS 55.0%
AAGCTAGCTGGAACAGGAGG+AGG - chr7_4:53317713-53317732 None:intergenic 55.0%
CCAAAGCTAGCTGGAACAGG+AGG - chr7_4:53317716-53317735 None:intergenic 55.0%
! CCTCCTGTTCCAGCTAGCTT+TGG + chr7_4:53317713-53317732 Msa1162550:CDS 55.0%
GCACCAAAGCTAGCTGGAAC+AGG - chr7_4:53317719-53317738 None:intergenic 55.0%
! AGTGTTGAAGCCTCCTTGGC+TGG + chr7_4:53317758-53317777 Msa1162550:CDS 55.0%
! GGGGCGCCTTGGTTTGAATT+AGG - chr7_4:53317971-53317990 None:intergenic 55.0%
! AATTCAAACCAAGGCGCCCC+TGG + chr7_4:53317971-53317990 Msa1162550:CDS 55.0%
! ATTCAAACCAAGGCGCCCCT+GGG + chr7_4:53317972-53317991 Msa1162550:CDS 55.0%
TGTTTCCATGATGGCCCCCA+GGG - chr7_4:53318012-53318031 None:intergenic 55.0%
TTGTTTCCATGATGGCCCCC+AGG - chr7_4:53318013-53318032 None:intergenic 55.0%
GACAGTGCACCGCCTCATTA+AGG - chr7_4:53318141-53318160 None:intergenic 55.0%
GTGCACTGTCGTGTCAGACA+GGG + chr7_4:53318151-53318170 Msa1162550:three_prime_UTR 55.0%
GTTGACTGTACCCGTAGCAG+CGG + chr7_4:53318337-53318356 Msa1162550:three_prime_UTR 55.0%
CAGAACACTACCGCTGCTAC+GGG - chr7_4:53318350-53318369 None:intergenic 55.0%
GCATGTGCATTTCGTGGGGC+TGG - chr7_4:53317476-53317495 None:intergenic 60.0%
GGGCGCATGTGCATTTCGTG+GGG - chr7_4:53317480-53317499 None:intergenic 60.0%
GCCCACGGAGAATGGGAACT+TGG + chr7_4:53317590-53317609 Msa1162550:CDS 60.0%
CATTGGGGGGTCCCATGTGA+CGG - chr7_4:53317661-53317680 None:intergenic 60.0%
! CCAAAACGGCCAGCATTGGG+GGG - chr7_4:53317674-53317693 None:intergenic 60.0%
! GCCAAAACGGCCAGCATTGG+GGG - chr7_4:53317675-53317694 None:intergenic 60.0%
! TTCAAACCAAGGCGCCCCTG+GGG + chr7_4:53317973-53317992 Msa1162550:CDS 60.0%
GTTTCCATGATGGCCCCCAG+GGG - chr7_4:53318011-53318030 None:intergenic 60.0%
GGTGCACTGTCGTGTCAGAC+AGG + chr7_4:53318150-53318169 Msa1162550:three_prime_UTR 60.0%
CACATGGGACCCCCCAATGC+TGG + chr7_4:53317662-53317681 Msa1162550:CDS 65.0%
! CCCCCCAATGCTGGCCGTTT+TGG + chr7_4:53317671-53317690 Msa1162550:CDS 65.0%
! TCAAACCAAGGCGCCCCTGG+GGG + chr7_4:53317974-53317993 Msa1162550:CDS 65.0%
!! CTGGGTGCAGGAGGTGCTGC+AGG - chr7_4:53317446-53317465 None:intergenic 70.0%
GGCGCCATGATGGCCCCCAG+GGG - chr7_4:53317990-53318009 None:intergenic 75.0%
GGGCGCCATGATGGCCCCCA+GGG - chr7_4:53317991-53318010 None:intergenic 75.0%
GGGGCCATCATGGCGCCCCT+GGG + chr7_4:53317993-53318012 Msa1162550:CDS 75.0%
GGGCCATCATGGCGCCCCTG+GGG + chr7_4:53317994-53318013 Msa1162550:CDS 75.0%
GGCCATCATGGCGCCCCTGG+GGG + chr7_4:53317995-53318014 Msa1162550:CDS 75.0%
!!! GATGGCCCCCAGGGGCGCCT+TGG - chr7_4:53317982-53318001 None:intergenic 80.0%
! GGCGCCCCTGGGGGCCATCA+TGG + chr7_4:53317983-53318002 Msa1162550:CDS 80.0%
!! GGGGCGCCATGATGGCCCCC+AGG - chr7_4:53317992-53318011 None:intergenic 80.0%
! GGGGGCCATCATGGCGCCCC+TGG + chr7_4:53317992-53318011 Msa1162550:CDS 80.0%
!!! GGCCCCCAGGGGCGCCATGA+TGG - chr7_4:53318000-53318019 None:intergenic 80.0%
! GGCGCCCCTGGGGGCCATCA+TGG + chr7_4:53317983-53318002 Msa1162550:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53314236 53318457 53314236 ID=Msa1162550;Name=Msa1162550
chr7_4 mRNA 53314236 53318457 53314236 ID=Msa1162550-mRNA-1;Parent=Msa1162550;Name=Msa1162550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|3|328|303
chr7_4 exon 53314236 53314445 53314236 ID=Msa1162550-mRNA-1:exon:15391;Parent=Msa1162550-mRNA-1
chr7_4 exon 53315172 53315232 53315172 ID=Msa1162550-mRNA-1:exon:15392;Parent=Msa1162550-mRNA-1
chr7_4 exon 53317352 53318457 53317352 ID=Msa1162550-mRNA-1:exon:15393;Parent=Msa1162550-mRNA-1
chr7_4 five_prime_UTR 53314236 53314372 53314236 ID=Msa1162550-mRNA-1:five_prime_utr;Parent=Msa1162550-mRNA-1
chr7_4 CDS 53314373 53314445 53314373 ID=Msa1162550-mRNA-1:cds;Parent=Msa1162550-mRNA-1
chr7_4 CDS 53315172 53315232 53315172 ID=Msa1162550-mRNA-1:cds;Parent=Msa1162550-mRNA-1
chr7_4 CDS 53317352 53318129 53317352 ID=Msa1162550-mRNA-1:cds;Parent=Msa1162550-mRNA-1
chr7_4 three_prime_UTR 53318130 53318457 53318130 ID=Msa1162550-mRNA-1:three_prime_utr;Parent=Msa1162550-mRNA-1
Gene Sequence

>Msa1162550

ATGGATATGCGCAAGAGAGGAAGACCCGAACATGGATTCAACAACAATGGCGGATTCAAGAAATCCAGACATGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGCGGTTATAATGCTGTTTCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTCCAGCCCCACGAAATGCACATGCGCCCAATGGTTCTGCGCCATCTGCTGTTAAAAGCCGCATATGCAGCAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGTCATTTCGCCCACGGAGAATGGGAACTTGGTAAGCCTGTAGCTCCATCATTTGATGATCACCGTCACAATGGTCACCGTCACATGGGACCCCCCAATGCTGGCCGTTTTGGCAGTCATCGGATGGAGCCTCCTCCTGTTCCAGCTAGCTTTGGTGCAAATGCCACTGCCAAGATCAGTGTTGAAGCCTCCTTGGCTGGAGCTATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGTCAAACTGGTGCCAAACTTTCAATTCGAGATCATGAAGACCCAAATCTGAGAAACATTGAACTTGAGGGAACATTTGAACAAATTAAGGATGCAAGCAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAATTCAAACCAAGGCGCCCCTGGGGGCCATCATGGCGCCCCTGGGGGCCATCATGGAAACAACTTGAAAACAAAACTGTGTGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCTGCTGAATTGCGTAAATGA

Protein sequence

>Msa1162550

MDMRKRGRPEHGFNNNGGFKKSRHEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAVSQMMNLTPAAPPAPRNVPAPRNAHAPNGSAPSAVKSRICSKFNTAEGCKFGDKCHFAHGEWELGKPVAPSFDDHRHNGHRHMGPPNAGRFGSHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHEDPNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPNSNQGAPGGHHGAPGGHHGNNLKTKLCENFAKGSCTFGERCHFAHGAAELRK*