AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0806090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0806090 MtrunA17_Chr5g0414211 73.228 127 34 0 1 127 164 290 9.99e-57 184
Msa0806090 MtrunA17_Chr5g0414181 70.229 131 39 0 1 131 840 970 1.51e-51 177
Msa0806090 MtrunA17_Chr5g0414201 87.755 98 12 0 1 98 842 939 2.03e-50 174
Msa0806090 MtrunA17_Chr3g0087301 62.500 128 48 0 1 128 829 956 6.04e-43 153
Msa0806090 MtrunA17_Chr5g0415471 56.589 129 55 1 1 128 846 974 3.38e-36 134
Msa0806090 MtrunA17_Chr5g0414311 50.388 129 63 1 1 128 849 977 5.60e-31 119
Msa0806090 MtrunA17_Chr5g0414301 51.327 113 55 0 1 113 367 479 7.66e-25 101
Msa0806090 MtrunA17_Chr5g0430901 40.714 140 75 3 1 140 715 846 1.81e-22 94.7
Msa0806090 MtrunA17_Chr5g0430621 35.503 169 88 4 5 155 839 1004 1.28e-21 92.0
Msa0806090 MtrunA17_Chr5g0430291 37.500 160 95 5 1 159 839 994 1.44e-21 92.0
Msa0806090 MtrunA17_Chr7g0244231 39.161 143 83 4 1 143 830 968 1.69e-21 92.0
Msa0806090 MtrunA17_Chr4g0027251 40.625 128 72 4 1 127 841 965 8.18e-21 89.7
Msa0806090 MtrunA17_Chr5g0430141 43.307 127 69 3 1 127 840 963 1.14e-20 89.4
Msa0806090 MtrunA17_Chr5g0414161 65.152 66 23 0 1 66 332 397 5.54e-20 86.7
Msa0806090 MtrunA17_Chr5g0430441 41.860 129 71 4 1 128 834 959 1.11e-19 86.7
Msa0806090 MtrunA17_Chr5g0430721 38.281 128 76 3 1 128 877 1001 6.68e-19 84.3
Msa0806090 MtrunA17_Chr5g0429961 42.188 128 70 4 1 127 831 955 1.97e-18 82.8
Msa0806090 MtrunA17_Chr1g0155991 40.157 127 73 3 1 127 834 957 2.30e-18 82.8
Msa0806090 MtrunA17_Chr5g0430581 40.000 130 74 4 1 129 827 953 1.33e-17 80.5
Msa0806090 MtrunA17_Chr5g0430341 40.769 130 73 4 1 129 378 504 7.21e-17 78.2
Msa0806090 MtrunA17_Chr1g0155321 35.211 142 88 4 2 143 833 970 1.32e-16 77.8
Msa0806090 MtrunA17_Chr5g0430641 36.025 161 97 6 1 159 834 990 5.26e-16 75.9
Msa0806090 MtrunA17_Chr4g0071011 39.024 123 72 3 5 127 331 450 9.73e-16 75.1
Msa0806090 MtrunA17_Chr5g0430511 34.375 160 94 6 1 159 839 988 1.08e-15 75.1
Msa0806090 MtrunA17_Chr5g0431051 37.692 130 77 4 1 129 836 962 4.82e-15 73.2
Msa0806090 MtrunA17_Chr6g0467921 35.821 134 72 4 1 132 45 166 5.74e-13 66.6
Msa0806090 MtrunA17_Chr5g0429951 38.281 128 75 4 1 127 839 963 1.38e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 39 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGCAAGCCCAACAATTT+AGG 0.179926 5_3:-23547216 None:intergenic
CTCTTGTATGCCTCCTTCTA+TGG 0.246218 5_3:-23548523 None:intergenic
ATGCAGCAATATGTATTTCT+TGG 0.271516 5_3:-23547467 None:intergenic
CTTGCTTTCTCTGTTGGAAT+TGG 0.316540 5_3:+23548595 Msa0806090:CDS
TTCAGCCTTGCTTTCTCTGT+TGG 0.339639 5_3:+23548589 Msa0806090:CDS
GGAATTGGTGATATTCTCTT+TGG 0.344117 5_3:+23548610 Msa0806090:CDS
CTTCATTGCCACTGAACATA+AGG 0.378080 5_3:-23547326 None:intergenic
AAGGCAAGCCCAACAATTTA+GGG 0.385016 5_3:-23547215 None:intergenic
TATTGAATGCCCTAAATTGT+TGG 0.393303 5_3:+23547206 Msa0806090:CDS
ATTGAATGCCCTAAATTGTT+GGG 0.402614 5_3:+23547207 Msa0806090:CDS
CAATAATTTGCAATTGAGAA+AGG 0.417812 5_3:-23547188 None:intergenic
AGGTTTCTTAGCATCCCATC+TGG 0.438181 5_3:-23547363 None:intergenic
GAACATGTCAAAGCCATAGA+AGG 0.440493 5_3:+23548510 Msa0806090:CDS
ATTCTCTTTGGTTATGACAT+TGG 0.462216 5_3:+23548622 Msa0806090:CDS
CTAAGGTTAATGATTTCAGT+TGG 0.478030 5_3:-23547438 None:intergenic
CACTAACTTGCTTTCCAGAT+GGG 0.479211 5_3:+23547349 Msa0806090:CDS
GTATTTCTTGGACAGCACTA+AGG 0.499449 5_3:-23547455 None:intergenic
TTCATTGCCACTGAACATAA+GGG 0.508482 5_3:-23547325 None:intergenic
TAAGGTTAATGATTTCAGTT+GGG 0.511910 5_3:-23547437 None:intergenic
CTTCATCTGTCAATGACTTG+AGG 0.534996 5_3:-23547497 None:intergenic
TCAGATGTAGACTACATGAA+TGG 0.544776 5_3:+23548832 Msa0806090:CDS
GCACTAACTTGCTTTCCAGA+TGG 0.545394 5_3:+23547348 Msa0806090:CDS
TTTGCAATTGAGAAAGGTGT+GGG 0.549173 5_3:-23547182 None:intergenic
CTCATTGATATGCGTATAAG+CGG 0.551048 5_3:+23547249 Msa0806090:CDS
TCTTAAGATATTGAGTATTG+TGG 0.552185 5_3:+23547539 Msa0806090:CDS
TATAAGCGGAAAATGCAATA+CGG 0.553844 5_3:+23547263 Msa0806090:CDS
AGTTGGGAAGCTTTCAAGTG+TGG 0.554215 5_3:-23547421 None:intergenic
ATAAGCGGAAAATGCAATAC+GGG 0.561726 5_3:+23547264 Msa0806090:CDS
ATTTGCAATTGAGAAAGGTG+TGG 0.568042 5_3:-23547183 None:intergenic
CTTGAATCCCTTATGTTCAG+TGG 0.569665 5_3:+23547318 Msa0806090:CDS
CAATTCCAACAGAGAAAGCA+AGG 0.588684 5_3:-23548594 None:intergenic
TTGACAGATGAAGTATTACA+AGG 0.592495 5_3:+23547507 Msa0806090:CDS
TCAATGAGAGATGGAAGGCA+AGG 0.612167 5_3:-23547234 None:intergenic
ATACGCATATCAATGAGAGA+TGG 0.631287 5_3:-23547243 None:intergenic
GCATATCAATGAGAGATGGA+AGG 0.649270 5_3:-23547239 None:intergenic
CATGTCAAAGCCATAGAAGG+AGG 0.656435 5_3:+23548513 Msa0806090:CDS
AATGGAAAGTTTCTGCACGA+AGG 0.656503 5_3:+23548850 Msa0806090:CDS
CATAGAAGGAGGCATACAAG+AGG 0.676488 5_3:+23548524 Msa0806090:CDS
TGACAGATGAAGTATTACAA+GGG 0.688359 5_3:+23547508 Msa0806090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATTTATATCTATAGTT+TGG + chr5_3:23548725-23548744 Msa0806090:intron 10.0%
!! ATTTATTTATATCTATAGTT+TGG + chr5_3:23548725-23548744 Msa0806090:intron 10.0%
!!! CAAAATTTTTTAGAGAATTG+AGG - chr5_3:23547386-23547405 None:intergenic 20.0%
!! TATTGAAATAGTATAGATTG+TGG + chr5_3:23548302-23548321 Msa0806090:intron 20.0%
!! TTTATTATTGTGTCTACTTT+AGG + chr5_3:23548483-23548502 Msa0806090:intron 20.0%
!!! CAAAATTTTTTAGAGAATTG+AGG - chr5_3:23547386-23547405 None:intergenic 20.0%
!! TATTGAAATAGTATAGATTG+TGG + chr5_3:23548302-23548321 Msa0806090:intron 20.0%
!! TTTATTATTGTGTCTACTTT+AGG + chr5_3:23548483-23548502 Msa0806090:intron 20.0%
!! CAATAATTTGCAATTGAGAA+AGG - chr5_3:23547191-23547210 None:intergenic 25.0%
! TAAGGTTAATGATTTCAGTT+GGG - chr5_3:23547440-23547459 None:intergenic 25.0%
!! TCTTAAGATATTGAGTATTG+TGG + chr5_3:23547539-23547558 Msa0806090:CDS 25.0%
!! TTTCAGATAGATTGAACTTT+TGG - chr5_3:23547569-23547588 None:intergenic 25.0%
! TTAATTCTTGAAGCAAACTT+AGG - chr5_3:23547746-23547765 None:intergenic 25.0%
! AAAAACATCAGAATGTTCTA+CGG + chr5_3:23547930-23547949 Msa0806090:intron 25.0%
!!! AAGCATTGTAATTTTGAGTT+TGG + chr5_3:23548139-23548158 Msa0806090:intron 25.0%
!!! ATTGTAATTTTGAGTTTGGT+AGG + chr5_3:23548143-23548162 Msa0806090:intron 25.0%
! TAGGTTTCATTTAGATTTGT+TGG + chr5_3:23548162-23548181 Msa0806090:intron 25.0%
!! TTTACTAAGTTGAACAAAGA+TGG - chr5_3:23548190-23548209 None:intergenic 25.0%
! TCTTTGTTCAACTTAGTAAA+AGG + chr5_3:23548190-23548209 Msa0806090:intron 25.0%
! ACAAGAACAAAACATAATCT+GGG - chr5_3:23548328-23548347 None:intergenic 25.0%
! TACAAGAACAAAACATAATC+TGG - chr5_3:23548329-23548348 None:intergenic 25.0%
! AAAGAAAAAAGTGAACGAAA+TGG - chr5_3:23548678-23548697 None:intergenic 25.0%
! TATAAATAAATCAGAGACTC+AGG - chr5_3:23548716-23548735 None:intergenic 25.0%
!! CAATAATTTGCAATTGAGAA+AGG - chr5_3:23547191-23547210 None:intergenic 25.0%
! TAAGGTTAATGATTTCAGTT+GGG - chr5_3:23547440-23547459 None:intergenic 25.0%
!! TCTTAAGATATTGAGTATTG+TGG + chr5_3:23547539-23547558 Msa0806090:CDS 25.0%
!! TTTCAGATAGATTGAACTTT+TGG - chr5_3:23547569-23547588 None:intergenic 25.0%
! TTAATTCTTGAAGCAAACTT+AGG - chr5_3:23547746-23547765 None:intergenic 25.0%
! AAAAACATCAGAATGTTCTA+CGG + chr5_3:23547930-23547949 Msa0806090:intron 25.0%
!!! AAGCATTGTAATTTTGAGTT+TGG + chr5_3:23548139-23548158 Msa0806090:intron 25.0%
!!! ATTGTAATTTTGAGTTTGGT+AGG + chr5_3:23548143-23548162 Msa0806090:intron 25.0%
! TAGGTTTCATTTAGATTTGT+TGG + chr5_3:23548162-23548181 Msa0806090:intron 25.0%
!! TTTACTAAGTTGAACAAAGA+TGG - chr5_3:23548190-23548209 None:intergenic 25.0%
! TCTTTGTTCAACTTAGTAAA+AGG + chr5_3:23548190-23548209 Msa0806090:intron 25.0%
! ACAAGAACAAAACATAATCT+GGG - chr5_3:23548328-23548347 None:intergenic 25.0%
! TACAAGAACAAAACATAATC+TGG - chr5_3:23548329-23548348 None:intergenic 25.0%
! AAAGAAAAAAGTGAACGAAA+TGG - chr5_3:23548678-23548697 None:intergenic 25.0%
! TATAAATAAATCAGAGACTC+AGG - chr5_3:23548716-23548735 None:intergenic 25.0%
TATTGAATGCCCTAAATTGT+TGG + chr5_3:23547206-23547225 Msa0806090:CDS 30.0%
ATTGAATGCCCTAAATTGTT+GGG + chr5_3:23547207-23547226 Msa0806090:CDS 30.0%
TATAAGCGGAAAATGCAATA+CGG + chr5_3:23547263-23547282 Msa0806090:CDS 30.0%
CTAAGGTTAATGATTTCAGT+TGG - chr5_3:23547441-23547460 None:intergenic 30.0%
ATGCAGCAATATGTATTTCT+TGG - chr5_3:23547470-23547489 None:intergenic 30.0%
! TTGACAGATGAAGTATTACA+AGG + chr5_3:23547507-23547526 Msa0806090:CDS 30.0%
! TGACAGATGAAGTATTACAA+GGG + chr5_3:23547508-23547527 Msa0806090:CDS 30.0%
!! CATTGAATGTGAGCTATTTT+TGG - chr5_3:23547900-23547919 None:intergenic 30.0%
TATATTATGCTTTCCACTCA+CGG + chr5_3:23548022-23548041 Msa0806090:intron 30.0%
AAGAAATCTCCTATGCATAT+GGG - chr5_3:23548075-23548094 None:intergenic 30.0%
!! CTCTTGCTATTACTTCAAAA+TGG - chr5_3:23548102-23548121 None:intergenic 30.0%
AATTACAATGCTTCAAAACG+AGG - chr5_3:23548132-23548151 None:intergenic 30.0%
GTTCAACTTAGTAAAAGGTA+AGG + chr5_3:23548195-23548214 Msa0806090:intron 30.0%
CTTGTATTTGTTCTTTAAGC+AGG + chr5_3:23548343-23548362 Msa0806090:intron 30.0%
ACAAAAGATGAGTACATGTT+TGG - chr5_3:23548435-23548454 None:intergenic 30.0%
CTTTCAAAAATGTTCTGTCA+TGG + chr5_3:23548559-23548578 Msa0806090:CDS 30.0%
ATTCTCTTTGGTTATGACAT+TGG + chr5_3:23548622-23548641 Msa0806090:CDS 30.0%
TATTGAATGCCCTAAATTGT+TGG + chr5_3:23547206-23547225 Msa0806090:CDS 30.0%
ATTGAATGCCCTAAATTGTT+GGG + chr5_3:23547207-23547226 Msa0806090:CDS 30.0%
TATAAGCGGAAAATGCAATA+CGG + chr5_3:23547263-23547282 Msa0806090:CDS 30.0%
CTAAGGTTAATGATTTCAGT+TGG - chr5_3:23547441-23547460 None:intergenic 30.0%
ATGCAGCAATATGTATTTCT+TGG - chr5_3:23547470-23547489 None:intergenic 30.0%
! TTGACAGATGAAGTATTACA+AGG + chr5_3:23547507-23547526 Msa0806090:CDS 30.0%
! TGACAGATGAAGTATTACAA+GGG + chr5_3:23547508-23547527 Msa0806090:CDS 30.0%
!! CATTGAATGTGAGCTATTTT+TGG - chr5_3:23547900-23547919 None:intergenic 30.0%
TATATTATGCTTTCCACTCA+CGG + chr5_3:23548022-23548041 Msa0806090:intron 30.0%
AAGAAATCTCCTATGCATAT+GGG - chr5_3:23548075-23548094 None:intergenic 30.0%
!! CTCTTGCTATTACTTCAAAA+TGG - chr5_3:23548102-23548121 None:intergenic 30.0%
AATTACAATGCTTCAAAACG+AGG - chr5_3:23548132-23548151 None:intergenic 30.0%
GTTCAACTTAGTAAAAGGTA+AGG + chr5_3:23548195-23548214 Msa0806090:intron 30.0%
CTTGTATTTGTTCTTTAAGC+AGG + chr5_3:23548343-23548362 Msa0806090:intron 30.0%
ACAAAAGATGAGTACATGTT+TGG - chr5_3:23548435-23548454 None:intergenic 30.0%
CTTTCAAAAATGTTCTGTCA+TGG + chr5_3:23548559-23548578 Msa0806090:CDS 30.0%
ATTCTCTTTGGTTATGACAT+TGG + chr5_3:23548622-23548641 Msa0806090:CDS 30.0%
! TTTGCAATTGAGAAAGGTGT+GGG - chr5_3:23547185-23547204 None:intergenic 35.0%
ATTTGCAATTGAGAAAGGTG+TGG - chr5_3:23547186-23547205 None:intergenic 35.0%
ATACGCATATCAATGAGAGA+TGG - chr5_3:23547246-23547265 None:intergenic 35.0%
CTCATTGATATGCGTATAAG+CGG + chr5_3:23547249-23547268 Msa0806090:CDS 35.0%
ATAAGCGGAAAATGCAATAC+GGG + chr5_3:23547264-23547283 Msa0806090:CDS 35.0%
TTCATTGCCACTGAACATAA+GGG - chr5_3:23547328-23547347 None:intergenic 35.0%
!! CTTCTATTTCTGAGCAACTT+TGG - chr5_3:23547629-23547648 None:intergenic 35.0%
ACACAATGTCAGTGATTGAA+GGG - chr5_3:23547682-23547701 None:intergenic 35.0%
AAACGGTGTAAAGAGAAAAC+AGG + chr5_3:23547864-23547883 Msa0806090:intron 35.0%
CAAGAATTTACTCTGCAGAT+TGG + chr5_3:23547961-23547980 Msa0806090:intron 35.0%
ATATTATGCTTTCCACTCAC+GGG + chr5_3:23548023-23548042 Msa0806090:intron 35.0%
CAAGAAATCTCCTATGCATA+TGG - chr5_3:23548076-23548095 None:intergenic 35.0%
CATATGCATAGGAGATTTCT+TGG + chr5_3:23548074-23548093 Msa0806090:intron 35.0%
TACATGTTTGGATAGTCATG+AGG - chr5_3:23548423-23548442 None:intergenic 35.0%
! GGAATTGGTGATATTCTCTT+TGG + chr5_3:23548610-23548629 Msa0806090:CDS 35.0%
TCAGATGTAGACTACATGAA+TGG + chr5_3:23548832-23548851 Msa0806090:CDS 35.0%
! TTTGCAATTGAGAAAGGTGT+GGG - chr5_3:23547185-23547204 None:intergenic 35.0%
ATTTGCAATTGAGAAAGGTG+TGG - chr5_3:23547186-23547205 None:intergenic 35.0%
ATACGCATATCAATGAGAGA+TGG - chr5_3:23547246-23547265 None:intergenic 35.0%
CTCATTGATATGCGTATAAG+CGG + chr5_3:23547249-23547268 Msa0806090:CDS 35.0%
ATAAGCGGAAAATGCAATAC+GGG + chr5_3:23547264-23547283 Msa0806090:CDS 35.0%
TTCATTGCCACTGAACATAA+GGG - chr5_3:23547328-23547347 None:intergenic 35.0%
!! CTTCTATTTCTGAGCAACTT+TGG - chr5_3:23547629-23547648 None:intergenic 35.0%
ACACAATGTCAGTGATTGAA+GGG - chr5_3:23547682-23547701 None:intergenic 35.0%
AAACGGTGTAAAGAGAAAAC+AGG + chr5_3:23547864-23547883 Msa0806090:intron 35.0%
CAAGAATTTACTCTGCAGAT+TGG + chr5_3:23547961-23547980 Msa0806090:intron 35.0%
ATATTATGCTTTCCACTCAC+GGG + chr5_3:23548023-23548042 Msa0806090:intron 35.0%
CAAGAAATCTCCTATGCATA+TGG - chr5_3:23548076-23548095 None:intergenic 35.0%
CATATGCATAGGAGATTTCT+TGG + chr5_3:23548074-23548093 Msa0806090:intron 35.0%
TACATGTTTGGATAGTCATG+AGG - chr5_3:23548423-23548442 None:intergenic 35.0%
! GGAATTGGTGATATTCTCTT+TGG + chr5_3:23548610-23548629 Msa0806090:CDS 35.0%
TCAGATGTAGACTACATGAA+TGG + chr5_3:23548832-23548851 Msa0806090:CDS 35.0%
AAGGCAAGCCCAACAATTTA+GGG - chr5_3:23547218-23547237 None:intergenic 40.0%
GCATATCAATGAGAGATGGA+AGG - chr5_3:23547242-23547261 None:intergenic 40.0%
CTTGAATCCCTTATGTTCAG+TGG + chr5_3:23547318-23547337 Msa0806090:CDS 40.0%
CTTCATTGCCACTGAACATA+AGG - chr5_3:23547329-23547348 None:intergenic 40.0%
!! CACTAACTTGCTTTCCAGAT+GGG + chr5_3:23547349-23547368 Msa0806090:CDS 40.0%
GTATTTCTTGGACAGCACTA+AGG - chr5_3:23547458-23547477 None:intergenic 40.0%
CTTCATCTGTCAATGACTTG+AGG - chr5_3:23547500-23547519 None:intergenic 40.0%
CCAATTTCTCAAGACAAGTG+AGG - chr5_3:23547602-23547621 None:intergenic 40.0%
CCTCACTTGTCTTGAGAAAT+TGG + chr5_3:23547599-23547618 Msa0806090:intron 40.0%
CACACAATGTCAGTGATTGA+AGG - chr5_3:23547683-23547702 None:intergenic 40.0%
TCAGGTATGGATGCAAGATT+TGG - chr5_3:23547711-23547730 None:intergenic 40.0%
!! GTAAGGCATTGAATGCTCAT+GGG - chr5_3:23547801-23547820 None:intergenic 40.0%
!! AGTAAGGCATTGAATGCTCA+TGG - chr5_3:23547802-23547821 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG + chr5_3:23547801-23547820 Msa0806090:intron 40.0%
TCAAACGTTTCAGACCAGTA+AGG - chr5_3:23547818-23547837 None:intergenic 40.0%
GTTGCAGTGAGTTAGAGAAA+CGG + chr5_3:23547847-23547866 Msa0806090:intron 40.0%
GTGTAAAGAGAAAACAGGTG+AGG + chr5_3:23547869-23547888 Msa0806090:intron 40.0%
AAGAGAAAACAGGTGAGGAT+TGG + chr5_3:23547874-23547893 Msa0806090:intron 40.0%
AAATCGTTCTCCCACTGTAT+GGG + chr5_3:23548048-23548067 Msa0806090:intron 40.0%
GAACATGTCAAAGCCATAGA+AGG + chr5_3:23548510-23548529 Msa0806090:CDS 40.0%
CAATTCCAACAGAGAAAGCA+AGG - chr5_3:23548597-23548616 None:intergenic 40.0%
CTTGCTTTCTCTGTTGGAAT+TGG + chr5_3:23548595-23548614 Msa0806090:CDS 40.0%
AAATCAGAGACTCAGGAGAA+AGG - chr5_3:23548709-23548728 None:intergenic 40.0%
AATGGAAAGTTTCTGCACGA+AGG + chr5_3:23548850-23548869 Msa0806090:CDS 40.0%
AAGGCAAGCCCAACAATTTA+GGG - chr5_3:23547218-23547237 None:intergenic 40.0%
GCATATCAATGAGAGATGGA+AGG - chr5_3:23547242-23547261 None:intergenic 40.0%
CTTGAATCCCTTATGTTCAG+TGG + chr5_3:23547318-23547337 Msa0806090:CDS 40.0%
CTTCATTGCCACTGAACATA+AGG - chr5_3:23547329-23547348 None:intergenic 40.0%
!! CACTAACTTGCTTTCCAGAT+GGG + chr5_3:23547349-23547368 Msa0806090:CDS 40.0%
GTATTTCTTGGACAGCACTA+AGG - chr5_3:23547458-23547477 None:intergenic 40.0%
CTTCATCTGTCAATGACTTG+AGG - chr5_3:23547500-23547519 None:intergenic 40.0%
CCAATTTCTCAAGACAAGTG+AGG - chr5_3:23547602-23547621 None:intergenic 40.0%
CCTCACTTGTCTTGAGAAAT+TGG + chr5_3:23547599-23547618 Msa0806090:intron 40.0%
CACACAATGTCAGTGATTGA+AGG - chr5_3:23547683-23547702 None:intergenic 40.0%
TCAGGTATGGATGCAAGATT+TGG - chr5_3:23547711-23547730 None:intergenic 40.0%
!! GTAAGGCATTGAATGCTCAT+GGG - chr5_3:23547801-23547820 None:intergenic 40.0%
!! AGTAAGGCATTGAATGCTCA+TGG - chr5_3:23547802-23547821 None:intergenic 40.0%
ATGAGCATTCAATGCCTTAC+TGG + chr5_3:23547801-23547820 Msa0806090:intron 40.0%
TCAAACGTTTCAGACCAGTA+AGG - chr5_3:23547818-23547837 None:intergenic 40.0%
GTTGCAGTGAGTTAGAGAAA+CGG + chr5_3:23547847-23547866 Msa0806090:intron 40.0%
GTGTAAAGAGAAAACAGGTG+AGG + chr5_3:23547869-23547888 Msa0806090:intron 40.0%
AAGAGAAAACAGGTGAGGAT+TGG + chr5_3:23547874-23547893 Msa0806090:intron 40.0%
AAATCGTTCTCCCACTGTAT+GGG + chr5_3:23548048-23548067 Msa0806090:intron 40.0%
GAACATGTCAAAGCCATAGA+AGG + chr5_3:23548510-23548529 Msa0806090:CDS 40.0%
CAATTCCAACAGAGAAAGCA+AGG - chr5_3:23548597-23548616 None:intergenic 40.0%
CTTGCTTTCTCTGTTGGAAT+TGG + chr5_3:23548595-23548614 Msa0806090:CDS 40.0%
AAATCAGAGACTCAGGAGAA+AGG - chr5_3:23548709-23548728 None:intergenic 40.0%
AATGGAAAGTTTCTGCACGA+AGG + chr5_3:23548850-23548869 Msa0806090:CDS 40.0%
CAAGGCAAGCCCAACAATTT+AGG - chr5_3:23547219-23547238 None:intergenic 45.0%
TCAATGAGAGATGGAAGGCA+AGG - chr5_3:23547237-23547256 None:intergenic 45.0%
!! GCACTAACTTGCTTTCCAGA+TGG + chr5_3:23547348-23547367 Msa0806090:CDS 45.0%
AGGTTTCTTAGCATCCCATC+TGG - chr5_3:23547366-23547385 None:intergenic 45.0%
! AGTTGGGAAGCTTTCAAGTG+TGG - chr5_3:23547424-23547443 None:intergenic 45.0%
ATCTTGCATCCATACCTGAC+TGG + chr5_3:23547712-23547731 Msa0806090:intron 45.0%
GTTTCCTAACCAGTCAGGTA+TGG - chr5_3:23547724-23547743 None:intergenic 45.0%
CTTAGGTTTCCTAACCAGTC+AGG - chr5_3:23547729-23547748 None:intergenic 45.0%
GAAATCGTTCTCCCACTGTA+TGG + chr5_3:23548047-23548066 Msa0806090:intron 45.0%
TGTATGGGTCCCATATGCAT+AGG + chr5_3:23548063-23548082 Msa0806090:intron 45.0%
CATGTCAAAGCCATAGAAGG+AGG + chr5_3:23548513-23548532 Msa0806090:CDS 45.0%
CTCTTGTATGCCTCCTTCTA+TGG - chr5_3:23548526-23548545 None:intergenic 45.0%
! CATAGAAGGAGGCATACAAG+AGG + chr5_3:23548524-23548543 Msa0806090:CDS 45.0%
TTCAGCCTTGCTTTCTCTGT+TGG + chr5_3:23548589-23548608 Msa0806090:CDS 45.0%
CAAGGCAAGCCCAACAATTT+AGG - chr5_3:23547219-23547238 None:intergenic 45.0%
TCAATGAGAGATGGAAGGCA+AGG - chr5_3:23547237-23547256 None:intergenic 45.0%
!! GCACTAACTTGCTTTCCAGA+TGG + chr5_3:23547348-23547367 Msa0806090:CDS 45.0%
AGGTTTCTTAGCATCCCATC+TGG - chr5_3:23547366-23547385 None:intergenic 45.0%
! AGTTGGGAAGCTTTCAAGTG+TGG - chr5_3:23547424-23547443 None:intergenic 45.0%
ATCTTGCATCCATACCTGAC+TGG + chr5_3:23547712-23547731 Msa0806090:intron 45.0%
GTTTCCTAACCAGTCAGGTA+TGG - chr5_3:23547724-23547743 None:intergenic 45.0%
CTTAGGTTTCCTAACCAGTC+AGG - chr5_3:23547729-23547748 None:intergenic 45.0%
GAAATCGTTCTCCCACTGTA+TGG + chr5_3:23548047-23548066 Msa0806090:intron 45.0%
TGTATGGGTCCCATATGCAT+AGG + chr5_3:23548063-23548082 Msa0806090:intron 45.0%
CATGTCAAAGCCATAGAAGG+AGG + chr5_3:23548513-23548532 Msa0806090:CDS 45.0%
CTCTTGTATGCCTCCTTCTA+TGG - chr5_3:23548526-23548545 None:intergenic 45.0%
! CATAGAAGGAGGCATACAAG+AGG + chr5_3:23548524-23548543 Msa0806090:CDS 45.0%
TTCAGCCTTGCTTTCTCTGT+TGG + chr5_3:23548589-23548608 Msa0806090:CDS 45.0%
! GCATCCATACCTGACTGGTT+AGG + chr5_3:23547717-23547736 Msa0806090:intron 50.0%
! GGCATTGAATGCTCATGGGA+AGG - chr5_3:23547797-23547816 None:intergenic 50.0%
AGAACGATTTCTCCCGTGAG+TGG - chr5_3:23548038-23548057 None:intergenic 50.0%
GCATATGGGACCCATACAGT+GGG - chr5_3:23548061-23548080 None:intergenic 50.0%
TGCATATGGGACCCATACAG+TGG - chr5_3:23548062-23548081 None:intergenic 50.0%
! GCATCCATACCTGACTGGTT+AGG + chr5_3:23547717-23547736 Msa0806090:intron 50.0%
! GGCATTGAATGCTCATGGGA+AGG - chr5_3:23547797-23547816 None:intergenic 50.0%
AGAACGATTTCTCCCGTGAG+TGG - chr5_3:23548038-23548057 None:intergenic 50.0%
GCATATGGGACCCATACAGT+GGG - chr5_3:23548061-23548080 None:intergenic 50.0%
TGCATATGGGACCCATACAG+TGG - chr5_3:23548062-23548081 None:intergenic 50.0%
! ATGGGAAGGCACGTCAGCTT+CGG - chr5_3:23547783-23547802 None:intergenic 55.0%
! ATGGGAAGGCACGTCAGCTT+CGG - chr5_3:23547783-23547802 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 23547177 23548881 23547177 ID=Msa0806090;Name=Msa0806090
chr5_3 mRNA 23547177 23548881 23547177 ID=Msa0806090-mRNA-1;Parent=Msa0806090;Name=Msa0806090-mRNA-1;_AED=0.54;_eAED=0.55;_QI=0|0|0|0.66|0|0|3|0|205
chr5_3 exon 23547177 23547571 23547177 ID=Msa0806090-mRNA-1:exon:9280;Parent=Msa0806090-mRNA-1
chr5_3 exon 23548505 23548643 23548505 ID=Msa0806090-mRNA-1:exon:9281;Parent=Msa0806090-mRNA-1
chr5_3 exon 23548798 23548881 23548798 ID=Msa0806090-mRNA-1:exon:9282;Parent=Msa0806090-mRNA-1
chr5_3 CDS 23547177 23547571 23547177 ID=Msa0806090-mRNA-1:cds;Parent=Msa0806090-mRNA-1
chr5_3 CDS 23548505 23548643 23548505 ID=Msa0806090-mRNA-1:cds;Parent=Msa0806090-mRNA-1
chr5_3 CDS 23548798 23548881 23548798 ID=Msa0806090-mRNA-1:cds;Parent=Msa0806090-mRNA-1
Gene Sequence

>Msa0806090

ATGCTCCCACACCTTTCTCAATTGCAAATTATTGAATGCCCTAAATTGTTGGGCTTGCCTTGCCTTCCATCTCTCATTGATATGCGTATAAGCGGAAAATGCAATACGGGTTTACTAAGTTCAATTCAAAAACTCGTTAGTCTTGAATCCCTTATGTTCAGTGGCAATGAAGCACTAACTTGCTTTCCAGATGGGATGCTAAGAAACCTCAATTCTCTAAAAAATTTTGACATTTGTATGCTTTCCACACTTGAAAGCTTCCCAACTGAAATCATTAACCTTAGTGCTGTCCAAGAAATACATATTGCTGCATGTGAAAACCTCAAGTCATTGACAGATGAAGTATTACAAGGGCTGCACTCTCTTAAGATATTGAGTATTGTGGAGTACCAAAAGAAAAGAACATGTCAAAGCCATAGAAGGAGGCATACAAGAGGCTTTAATGTATGCTTTCAAAAATGTTCTGTCATGGAAGAATCTTCAGCCTTGCTTTCTCTGTTGGAATTGGTGATATTCTCTTTGGTTATGACATTGAGTTTATGCACAGCATTTGTAAAAGTGATCTTATTCAGATGTAGACTACATGAATGGAAAGTTTCTGCACGAAGGAAGCGTTGA

Protein sequence

>Msa0806090

MLPHLSQLQIIECPKLLGLPCLPSLIDMRISGKCNTGLLSSIQKLVSLESLMFSGNEALTCFPDGMLRNLNSLKNFDICMLSTLESFPTEIINLSAVQEIHIAACENLKSLTDEVLQGLHSLKILSIVEYQKKRTCQSHRRRHTRGFNVCFQKCSVMEESSALLSLLELVIFSLVMTLSLCTAFVKVILFRCRLHEWKVSARRKR*