Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069240 | XP_039687137.1 | 94.541 | 403 | 17 | 1 | 90 | 487 | 3 | 405 | 0.0 | 770 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069240 | sp|Q921I1|TRFE_MOUSE | 32.530 | 332 | 178 | 18 | 112 | 425 | 354 | 657 | 1.48e-30 | 129 |
| Msa0069240 | sp|Q921I1|TRFE_MOUSE | 28.108 | 370 | 222 | 16 | 115 | 463 | 22 | 368 | 1.77e-21 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069240 | G7I3C5 | 94.595 | 370 | 15 | 1 | 90 | 454 | 3 | 372 | 0.0 | 730 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037030 | Msa0069240 | 0.866553 | 2.621437e-65 | -8.615850e-47 |
| Msa0069240 | Msa0607330 | 0.802127 | 6.500587e-49 | -8.615850e-47 |
| Msa0069240 | Msa0980580 | 0.815959 | 7.076664e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0069240 | MtrunA17_Chr1g0199911 | 94.462 | 325 | 13 | 1 | 90 | 409 | 3 | 327 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 148 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAAGTGGCTTTGGCTTC+TGG | 0.139532 | 1_2:+37489130 | None:intergenic |
| CATGGTCAACAAAGTCTCTT+AGG | 0.218867 | 1_2:-37489946 | Msa0069240:CDS |
| AAACAACAAAGTCTCTATTT+TGG | 0.233000 | 1_2:+37488895 | None:intergenic |
| TGCAACAGCTTCATAGGTTT+TGG | 0.237405 | 1_2:+37490351 | None:intergenic |
| AAGGACTAGACATGATTAAA+AGG | 0.238659 | 1_2:-37489216 | Msa0069240:CDS |
| GCGGCTCCAATATCGGAAAA+TGG | 0.240046 | 1_2:-37490978 | Msa0069240:CDS |
| TATTATTAGCTCATCATATT+AGG | 0.255074 | 1_2:+37488779 | None:intergenic |
| GGCAATGGTGGGTCTATTTC+CGG | 0.269331 | 1_2:-37491062 | Msa0069240:CDS |
| AAGGGTCACGAGGTTGTATC+TGG | 0.269966 | 1_2:-37489197 | Msa0069240:CDS |
| GTCATCCGTCGCCGGATCAT+TGG | 0.270158 | 1_2:+37490935 | None:intergenic |
| TACTGCCTTGTTCTATTCTA+TGG | 0.274106 | 1_2:-37489987 | Msa0069240:CDS |
| AATGAAACCTGCAATGAAAT+AGG | 0.296785 | 1_2:-37490085 | Msa0069240:CDS |
| GTGAAGTGGCTTTGGCTTCT+GGG | 0.302414 | 1_2:+37489131 | None:intergenic |
| TGTGCCATTATCACATTTGC+AGG | 0.322187 | 1_2:+37489600 | None:intergenic |
| ATACAAGCCTATTTCATTGC+AGG | 0.329472 | 1_2:+37490078 | None:intergenic |
| CAAGAATGGAGAAGCAGATT+TGG | 0.336001 | 1_2:-37490458 | Msa0069240:CDS |
| CGGTGTCATTAACCAACTAA+TGG | 0.351956 | 1_2:-37490856 | Msa0069240:CDS |
| TTTAATCATGTCTAGTCCTT+GGG | 0.353400 | 1_2:+37489219 | None:intergenic |
| GTGCTTGATTTCTTTATAGT+AGG | 0.358155 | 1_2:-37488736 | Msa0069240:three_prime_UTR |
| CGATATTGGAGCCGCAGCTT+CGG | 0.361064 | 1_2:+37490986 | None:intergenic |
| TGTTGTATGTGAAGTGGCTT+TGG | 0.366669 | 1_2:+37489123 | None:intergenic |
| GAGACTTTGTTGACCATGAT+TGG | 0.374237 | 1_2:+37489951 | None:intergenic |
| TACAACTGCAACAGCTTCAT+AGG | 0.375227 | 1_2:+37490345 | None:intergenic |
| TTAGGTATCTTTGCCCTAAA+GGG | 0.379845 | 1_2:-37489833 | Msa0069240:intron |
| AACATTGACGAATACTAGTT+TGG | 0.381344 | 1_2:-37489538 | Msa0069240:CDS |
| GATATTGGAGCCGCAGCTTC+GGG | 0.382279 | 1_2:+37490987 | None:intergenic |
| CGAAGCTGCGGCTCCAATAT+CGG | 0.384037 | 1_2:-37490985 | Msa0069240:CDS |
| GACATGCATTCTCTTCTTGT+TGG | 0.385917 | 1_2:+37489566 | None:intergenic |
| CGGCTCCAATATCGGAAAAT+GGG | 0.387560 | 1_2:-37490977 | Msa0069240:CDS |
| TTGTCTGATGTGTGCAGAAT+TGG | 0.390343 | 1_2:-37488808 | Msa0069240:three_prime_UTR |
| TTGGTCAAAAGAGAACAAAA+TGG | 0.399291 | 1_2:+37491419 | None:intergenic |
| CATACAACAGATAACGTTCC+AGG | 0.403749 | 1_2:-37489109 | Msa0069240:intron |
| ACATGCATTCTCTTCTTGTT+GGG | 0.406977 | 1_2:+37489567 | None:intergenic |
| AAGAAGAGAAACAGTGTTGT+TGG | 0.411460 | 1_2:+37491386 | None:intergenic |
| AGGTGTCTAGTAGAGGAGTT+GGG | 0.413895 | 1_2:-37490034 | Msa0069240:CDS |
| TAATGGGCTACGTGTGGAAA+TGG | 0.416557 | 1_2:-37490839 | Msa0069240:intron |
| CTGTCATCACTCTCCATTCA+AGG | 0.418562 | 1_2:-37491344 | Msa0069240:intron |
| TAGGTGTCTAGTAGAGGAGT+TGG | 0.421638 | 1_2:-37490035 | Msa0069240:CDS |
| AATAAAGTAGTCCGGTTTGT+TGG | 0.428525 | 1_2:-37488697 | Msa0069240:three_prime_UTR |
| CTCACCCCTGATGCTACTAT+TGG | 0.428861 | 1_2:-37488935 | Msa0069240:CDS |
| TGTTCCTGCAAATGTGATAA+TGG | 0.432281 | 1_2:-37489604 | Msa0069240:CDS |
| GAAAATGGGGTGGGAGGCCA+TGG | 0.434127 | 1_2:-37490963 | Msa0069240:CDS |
| TAAGTACCAATAGTAGCATC+AGG | 0.438718 | 1_2:+37488929 | None:intergenic |
| TCATCCGTCGCCGGATCATT+GGG | 0.443613 | 1_2:+37490936 | None:intergenic |
| CCTCCATCACCACTGGCGAC+GGG | 0.445644 | 1_2:+37491027 | None:intergenic |
| AATGAAATAGGCTTGTATTC+TGG | 0.456061 | 1_2:-37490073 | Msa0069240:CDS |
| CCATGGCACACCCAATGATC+CGG | 0.457452 | 1_2:-37490946 | Msa0069240:CDS |
| TCCTCCATCACCACTGGCGA+CGG | 0.457816 | 1_2:+37491026 | None:intergenic |
| TTTAGGTATCTTTGCCCTAA+AGG | 0.460465 | 1_2:-37489834 | Msa0069240:intron |
| GGTTGTTGCGAATATCGATT+GGG | 0.462387 | 1_2:+37489499 | None:intergenic |
| GTTGACCATGATTGGTTATG+AGG | 0.462653 | 1_2:+37489959 | None:intergenic |
| TGATGGAGGAGTGGCACAAT+AGG | 0.464742 | 1_2:-37491013 | Msa0069240:CDS |
| CGACGGATGACGGCGGAGTA+AGG | 0.464895 | 1_2:-37490923 | Msa0069240:CDS |
| GGTGTCATTAACCAACTAAT+GGG | 0.468303 | 1_2:-37490855 | Msa0069240:CDS |
| GCATCCACTGGAGGAAGTGC+TGG | 0.476671 | 1_2:+37491095 | None:intergenic |
| AGAAGAGAAACAGTGTTGTT+GGG | 0.479019 | 1_2:+37491387 | None:intergenic |
| TGATTGACTCTAGACAATCC+TGG | 0.479542 | 1_2:+37490479 | None:intergenic |
| GCCTTGTTCTATTCTATGGA+GGG | 0.487961 | 1_2:-37489983 | Msa0069240:CDS |
| AGCTTGGTGATGGCAATGGC+TGG | 0.489751 | 1_2:+37491180 | None:intergenic |
| CATATTGTTGTTGATGTCAA+CGG | 0.492151 | 1_2:+37491464 | None:intergenic |
| TGGTCAAAAGAGAACAAAAT+GGG | 0.498456 | 1_2:+37491420 | None:intergenic |
| GGAGGTTACTCCACAGCAGC+AGG | 0.505464 | 1_2:-37490253 | Msa0069240:CDS |
| CTCCATCACCACTGGCGACG+GGG | 0.508711 | 1_2:+37491028 | None:intergenic |
| AAGGAGTGTCAGTCCTTTGT+CGG | 0.509813 | 1_2:-37490876 | Msa0069240:CDS |
| CCGGATCATTGGGTGTGCCA+TGG | 0.510588 | 1_2:+37490946 | None:intergenic |
| AATGATCCGGCGACGGATGA+CGG | 0.511835 | 1_2:-37490933 | Msa0069240:CDS |
| TGTTGTTGGGATCTGCATCT+TGG | 0.513681 | 1_2:+37491400 | None:intergenic |
| TCCACACGTAGCCCATTAGT+TGG | 0.513787 | 1_2:+37490844 | None:intergenic |
| ATGATCATAATATATCTCAT+TGG | 0.514942 | 1_2:+37490375 | None:intergenic |
| ATAATATATCTCATTGGCTA+TGG | 0.515079 | 1_2:+37490381 | None:intergenic |
| GAGTGATGACAGAAGAAGAG+AGG | 0.516282 | 1_2:+37491355 | None:intergenic |
| TCCATCACCACTGGCGACGG+GGG | 0.521238 | 1_2:+37491029 | None:intergenic |
| CACCTTTGTTGCAGTACCCA+AGG | 0.523484 | 1_2:-37489235 | Msa0069240:intron |
| ACTCCGCCGTCATCCGTCGC+CGG | 0.530133 | 1_2:+37490927 | None:intergenic |
| CCACTACCTTCTGCATCCAC+TGG | 0.530575 | 1_2:+37491083 | None:intergenic |
| TGTCTAGAGTCAATCAAGAA+TGG | 0.532295 | 1_2:-37490472 | Msa0069240:CDS |
| AGGTCTAGAATCCAACAAAC+CGG | 0.533196 | 1_2:+37488686 | None:intergenic |
| AGGTTGTTGCGAATATCGAT+TGG | 0.533382 | 1_2:+37489498 | None:intergenic |
| GCCACCAGCACTTCCTCCAG+TGG | 0.534678 | 1_2:-37491099 | Msa0069240:CDS |
| TCCAATATCGGAAAATGGGG+TGG | 0.535404 | 1_2:-37490973 | Msa0069240:CDS |
| ATGGTCAACAAAGTCTCTTA+GGG | 0.536352 | 1_2:-37489945 | Msa0069240:CDS |
| GATTGACTCTAGACAATCCT+GGG | 0.539227 | 1_2:+37490480 | None:intergenic |
| AGGGTCACGAGGTTGTATCT+GGG | 0.539966 | 1_2:-37489196 | Msa0069240:CDS |
| GTAGTTCCATCCTGCTGCTG+TGG | 0.542388 | 1_2:+37490243 | None:intergenic |
| AAAACTTACGAACAATCTGC+AGG | 0.544949 | 1_2:+37489786 | None:intergenic |
| CCATTGCCATCACCAAGCTC+TGG | 0.546468 | 1_2:-37491176 | Msa0069240:CDS |
| TGCCACTCCTCCATCACCAC+TGG | 0.547171 | 1_2:+37491020 | None:intergenic |
| CTGTTGCAGTTGTAAACAGA+AGG | 0.548368 | 1_2:-37490336 | Msa0069240:CDS |
| AGGACTAGACATGATTAAAA+GGG | 0.550810 | 1_2:-37489215 | Msa0069240:CDS |
| ATTGACGAATACTAGTTTGG+TGG | 0.551045 | 1_2:-37489535 | Msa0069240:CDS |
| GGAAGTGCTGGTGGCAGAAG+AGG | 0.551309 | 1_2:+37491107 | None:intergenic |
| TGCCTTGTTCTATTCTATGG+AGG | 0.553128 | 1_2:-37489984 | Msa0069240:CDS |
| AGGGACCTCATAACCAATCA+TGG | 0.554719 | 1_2:-37489964 | Msa0069240:CDS |
| TACTTTCATAGTTTCATATG+CGG | 0.555190 | 1_2:-37488858 | Msa0069240:three_prime_UTR |
| TCAAAACCTTCAACCTCTGA+TGG | 0.557623 | 1_2:+37490133 | None:intergenic |
| TAAAGAGTAATAAAGTAGTC+CGG | 0.558650 | 1_2:-37488705 | Msa0069240:three_prime_UTR |
| ATCAGTTTAATGGACTTCAA+AGG | 0.562705 | 1_2:-37490292 | Msa0069240:CDS |
| ATGCATGTGTATACCTTGAA+TGG | 0.563332 | 1_2:+37491331 | None:intergenic |
| GCAGAAGGTAGTGGCAATGG+TGG | 0.564571 | 1_2:-37491074 | Msa0069240:CDS |
| CACAGTGAGGGACGAAGTGA+AGG | 0.565435 | 1_2:-37490895 | Msa0069240:CDS |
| CGCCAGTGGTGATGGAGGAG+TGG | 0.565858 | 1_2:-37491022 | Msa0069240:CDS |
| GCAACAACCTATTTAGTCCA+AGG | 0.567581 | 1_2:-37489485 | Msa0069240:intron |
| CCCGTCGCCAGTGGTGATGG+AGG | 0.572332 | 1_2:-37491027 | Msa0069240:CDS |
| TGTGCACCATCAGAGGTTGA+AGG | 0.574026 | 1_2:-37490139 | Msa0069240:CDS |
| GGCTTGTATTCTGGTCACTC+AGG | 0.574907 | 1_2:-37490064 | Msa0069240:CDS |
| TTTGATACATGTAATGTATG+TGG | 0.576499 | 1_2:-37490115 | Msa0069240:CDS |
| AGGTATCTTTGCCCTAAAGG+GGG | 0.576544 | 1_2:-37489831 | Msa0069240:CDS |
| GTTATCTGTTGTATGTGAAG+TGG | 0.578455 | 1_2:+37489117 | None:intergenic |
| GGTTGGAACTCGTGAACTGA+TGG | 0.578796 | 1_2:+37491131 | None:intergenic |
| CAAACATGTGAAGATGAAGA+TGG | 0.580809 | 1_2:+37488982 | None:intergenic |
| AGTAAGGTGGTGCACAGTGA+GGG | 0.580947 | 1_2:-37490907 | Msa0069240:CDS |
| GATTTGGTGAACTTAGAAGC+AGG | 0.584360 | 1_2:-37490442 | Msa0069240:CDS |
| AAAGGTCACAAGTCTTGCCA+TGG | 0.587608 | 1_2:-37490274 | Msa0069240:CDS |
| ACGACTTTGTGCACCATCAG+AGG | 0.587718 | 1_2:-37490146 | Msa0069240:CDS |
| CCAGTGGATGCAGAAGGTAG+TGG | 0.590987 | 1_2:-37491083 | Msa0069240:CDS |
| TCATCACCAGAGCTTGGTGA+TGG | 0.592564 | 1_2:+37491170 | None:intergenic |
| TAGGTATCTTTGCCCTAAAG+GGG | 0.593324 | 1_2:-37489832 | Msa0069240:CDS |
| CCAATATCGGAAAATGGGGT+GGG | 0.596208 | 1_2:-37490972 | Msa0069240:CDS |
| ACCAACTAATGGGCTACGTG+TGG | 0.596784 | 1_2:-37490845 | Msa0069240:CDS |
| CCAGAGCTTGGTGATGGCAA+TGG | 0.596900 | 1_2:+37491176 | None:intergenic |
| CACACCCAATGATCCGGCGA+CGG | 0.598298 | 1_2:-37490940 | Msa0069240:CDS |
| TTTCATAGTTTCATATGCGG+TGG | 0.598662 | 1_2:-37488855 | Msa0069240:three_prime_UTR |
| ATATCGGAAAATGGGGTGGG+AGG | 0.604798 | 1_2:-37490969 | Msa0069240:CDS |
| TCGTGATCATCACCAGAGCT+TGG | 0.607923 | 1_2:+37491164 | None:intergenic |
| TCCACTGGAGGAAGTGCTGG+TGG | 0.612234 | 1_2:+37491098 | None:intergenic |
| AAGTACCAATAGTAGCATCA+GGG | 0.612796 | 1_2:+37488930 | None:intergenic |
| TTGGTTAATGACACCGACAA+AGG | 0.623235 | 1_2:+37490863 | None:intergenic |
| CAATAGGTCTCCCGAAGCTG+CGG | 0.624314 | 1_2:-37490997 | Msa0069240:CDS |
| GTTACTCCACAGCAGCAGGA+TGG | 0.625433 | 1_2:-37490249 | Msa0069240:CDS |
| GAGTAAGGTGGTGCACAGTG+AGG | 0.634640 | 1_2:-37490908 | Msa0069240:CDS |
| CTACCTTCTGCATCCACTGG+AGG | 0.635103 | 1_2:+37491086 | None:intergenic |
| CTGCTGTGGAGTAACCTCCA+TGG | 0.636623 | 1_2:+37490257 | None:intergenic |
| CTTCCTCCAGTGGATGCAGA+AGG | 0.638589 | 1_2:-37491089 | Msa0069240:CDS |
| CAGAAGGTAGTGGCAATGGT+GGG | 0.642384 | 1_2:-37491073 | Msa0069240:CDS |
| CGGATGACGGCGGAGTAAGG+TGG | 0.643445 | 1_2:-37490920 | Msa0069240:CDS |
| GGCTCCAATATCGGAAAATG+GGG | 0.648028 | 1_2:-37490976 | Msa0069240:CDS |
| GATGCAGAAGGTAGTGGCAA+TGG | 0.649248 | 1_2:-37491077 | Msa0069240:CDS |
| GGGTCACGAGGTTGTATCTG+GGG | 0.649370 | 1_2:-37489195 | Msa0069240:CDS |
| GGTCACAAGTCTTGCCATGG+AGG | 0.651029 | 1_2:-37490271 | Msa0069240:CDS |
| TGTTGCAGTTGTAAACAGAA+GGG | 0.658915 | 1_2:-37490335 | Msa0069240:CDS |
| AGTGCTGGTGGCAGAAGAGG+TGG | 0.660010 | 1_2:+37491110 | None:intergenic |
| AGTACCAATAGTAGCATCAG+GGG | 0.663504 | 1_2:+37488931 | None:intergenic |
| CTGGTGGCAGAAGAGGTGGT+TGG | 0.678794 | 1_2:+37491114 | None:intergenic |
| TGGAACTCGTGAACTGATGG+AGG | 0.684922 | 1_2:+37491134 | None:intergenic |
| GATCCGGCGACGGATGACGG+CGG | 0.685048 | 1_2:-37490930 | Msa0069240:CDS |
| TCCCTCCATAGAATAGAACA+AGG | 0.696491 | 1_2:+37489982 | None:intergenic |
| GTTGTTGCGAATATCGATTG+GGG | 0.707340 | 1_2:+37489500 | None:intergenic |
| ACATGATTAAAAGGGTCACG+AGG | 0.726909 | 1_2:-37489207 | Msa0069240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTAATGTGATTGAT+GGG | + | chr1_2:37489898-37489917 | None:intergenic | 15.0% |
| !!! | TAAATTTTTAATGTGATTGA+TGG | + | chr1_2:37489899-37489918 | None:intergenic | 15.0% |
| !!! | TTTGTTTCCATATATTTTTC+AGG | - | chr1_2:37488909-37488928 | Msa0069240:CDS | 20.0% |
| !!! | ATAGTTGTGTCTAAAATTTA+AGG | + | chr1_2:37489433-37489452 | None:intergenic | 20.0% |
| !! | ATTTATGCTTAGTAGTTAAT+AGG | - | chr1_2:37489451-37489470 | Msa0069240:intron | 20.0% |
| !! | ATGATCATAATATATCTCAT+TGG | + | chr1_2:37489743-37489762 | None:intergenic | 20.0% |
| !! | CAATGAAAAAATCAGTTTAA+TGG | - | chr1_2:37489813-37489832 | Msa0069240:CDS | 20.0% |
| !!! | AATTTTTAATGTGATTGATG+GGG | + | chr1_2:37489897-37489916 | None:intergenic | 20.0% |
| !! | TGATGAAAAAATGAATGATA+AGG | - | chr1_2:37489924-37489943 | Msa0069240:intron | 20.0% |
| !! | AAAAAAAAATCTTACACCTA+TGG | + | chr1_2:37490384-37490403 | None:intergenic | 20.0% |
| !! | GTTAATGTTAAAATGATAAC+AGG | + | chr1_2:37490454-37490473 | None:intergenic | 20.0% |
| !!! | TTACAATGTTTTTCTAAATC+TGG | - | chr1_2:37490752-37490771 | Msa0069240:intron | 20.0% |
| !! | AATTTAATAACCCAACTAAA+TGG | + | chr1_2:37491047-37491066 | None:intergenic | 20.0% |
| !! | TATTATTAGCTCATCATATT+AGG | + | chr1_2:37491339-37491358 | None:intergenic | 20.0% |
| !! | ATAATATATCTCATTGGCTA+TGG | + | chr1_2:37489737-37489756 | None:intergenic | 25.0% |
| ! | TTTGATACATGTAATGTATG+TGG | - | chr1_2:37490000-37490019 | Msa0069240:CDS | 25.0% |
| ! | CATCACATGAAAAGTTTATT+AGG | + | chr1_2:37490215-37490234 | None:intergenic | 25.0% |
| !! | TCAATCCATTGAATGATTTT+AGG | - | chr1_2:37490264-37490283 | Msa0069240:CDS | 25.0% |
| ! | AGATACCTAAAATCATTCAA+TGG | + | chr1_2:37490272-37490291 | None:intergenic | 25.0% |
| !!! | ATTTTAACATTAACTAGAGC+TGG | - | chr1_2:37490460-37490479 | Msa0069240:CDS | 25.0% |
| !! | TATTTTACCTTGGACTAAAT+AGG | + | chr1_2:37490640-37490659 | None:intergenic | 25.0% |
| ! | TATTTAGTCCAAGGTAAAAT+AGG | - | chr1_2:37490639-37490658 | Msa0069240:intron | 25.0% |
| !! | AAGATATTCCTATTTTACCT+TGG | + | chr1_2:37490650-37490669 | None:intergenic | 25.0% |
| ! | TTTATATTGTTGTCTACAAC+AGG | - | chr1_2:37490678-37490697 | Msa0069240:intron | 25.0% |
| ! | AAAACTCCTATATGAAAATC+TGG | - | chr1_2:37490806-37490825 | Msa0069240:intron | 25.0% |
| ! | TCTAATTTCACCATTTAGTT+GGG | - | chr1_2:37491034-37491053 | Msa0069240:CDS | 25.0% |
| !! | AAACAACAAAGTCTCTATTT+TGG | + | chr1_2:37491223-37491242 | None:intergenic | 25.0% |
| ! | TACTTTCATAGTTTCATATG+CGG | - | chr1_2:37491257-37491276 | Msa0069240:intron | 25.0% |
| ! | TAAAGAGTAATAAAGTAGTC+CGG | - | chr1_2:37491410-37491429 | Msa0069240:exon | 25.0% |
| !!! | TAGACCTTGATATATTTTTG+AGG | - | chr1_2:37491445-37491464 | Msa0069240:five_prime_UTR | 25.0% |
| !!! | AGACCTTGATATATTTTTGA+GGG | - | chr1_2:37491446-37491465 | Msa0069240:five_prime_UTR | 25.0% |
| ! | CATATTGTTGTTGATGTCAA+CGG | + | chr1_2:37488654-37488673 | None:intergenic | 30.0% |
| TGGTCAAAAGAGAACAAAAT+GGG | + | chr1_2:37488698-37488717 | None:intergenic | 30.0% | |
| TTGGTCAAAAGAGAACAAAA+TGG | + | chr1_2:37488699-37488718 | None:intergenic | 30.0% | |
| CTGGAAACCTGAAAAATATA+TGG | + | chr1_2:37488919-37488938 | None:intergenic | 30.0% | |
| TGGATGCTAATGACATAAAA+AGG | + | chr1_2:37489604-37489623 | None:intergenic | 30.0% | |
| !! | ATCAGTTTAATGGACTTCAA+AGG | - | chr1_2:37489823-37489842 | Msa0069240:CDS | 30.0% |
| AATGAAACCTGCAATGAAAT+AGG | - | chr1_2:37490030-37490049 | Msa0069240:CDS | 30.0% | |
| AATGAAATAGGCTTGTATTC+TGG | - | chr1_2:37490042-37490061 | Msa0069240:CDS | 30.0% | |
| CATGAAAAGTTTATTAGGCA+AGG | + | chr1_2:37490210-37490229 | None:intergenic | 30.0% | |
| TTTCATGTGATGCATAAAGT+AGG | - | chr1_2:37490223-37490242 | Msa0069240:CDS | 30.0% | |
| !! | CAATGGATTGATATTAGTTG+AGG | + | chr1_2:37490255-37490274 | None:intergenic | 30.0% |
| TGCAATTAGAAACATGCATT+AGG | + | chr1_2:37490410-37490429 | None:intergenic | 30.0% | |
| AACATTGACGAATACTAGTT+TGG | - | chr1_2:37490577-37490596 | Msa0069240:intron | 30.0% | |
| ! | TTCCATCCAGATTTTCATAT+AGG | + | chr1_2:37490815-37490834 | None:intergenic | 30.0% |
| TTTAATCATGTCTAGTCCTT+GGG | + | chr1_2:37490899-37490918 | None:intergenic | 30.0% | |
| ! | TTTTAATCATGTCTAGTCCT+TGG | + | chr1_2:37490900-37490919 | None:intergenic | 30.0% |
| AAGGACTAGACATGATTAAA+AGG | - | chr1_2:37490899-37490918 | Msa0069240:CDS | 30.0% | |
| AGGACTAGACATGATTAAAA+GGG | - | chr1_2:37490900-37490919 | Msa0069240:CDS | 30.0% | |
| CTCTAATTTCACCATTTAGT+TGG | - | chr1_2:37491033-37491052 | Msa0069240:CDS | 30.0% | |
| GTGCTTGATTTCTTTATAGT+AGG | - | chr1_2:37491379-37491398 | Msa0069240:CDS | 30.0% | |
| AGTCCCTCAAAAATATATCA+AGG | + | chr1_2:37491452-37491471 | None:intergenic | 30.0% | |
| ! | AGAAGAGAAACAGTGTTGTT+GGG | + | chr1_2:37488731-37488750 | None:intergenic | 35.0% |
| AAGAAGAGAAACAGTGTTGT+TGG | + | chr1_2:37488732-37488751 | None:intergenic | 35.0% | |
| ATGCATGTGTATACCTTGAA+TGG | + | chr1_2:37488787-37488806 | None:intergenic | 35.0% | |
| ! | TTGAGCTTTATGTGTGTTGT+GGG | + | chr1_2:37488857-37488876 | None:intergenic | 35.0% |
| !! | GGTGTCATTAACCAACTAAT+GGG | - | chr1_2:37489260-37489279 | Msa0069240:intron | 35.0% |
| AACGTTGATGTTGTCCAATA+AGG | - | chr1_2:37489369-37489388 | Msa0069240:intron | 35.0% | |
| ACGTTGATGTTGTCCAATAA+GGG | - | chr1_2:37489370-37489389 | Msa0069240:intron | 35.0% | |
| CTCGTTAGTATTTCCCTTAT+TGG | + | chr1_2:37489386-37489405 | None:intergenic | 35.0% | |
| ! | TGTCTAGAGTCAATCAAGAA+TGG | - | chr1_2:37489643-37489662 | Msa0069240:intron | 35.0% |
| TGTTGCAGTTGTAAACAGAA+GGG | - | chr1_2:37489780-37489799 | Msa0069240:intron | 35.0% | |
| ATACAAGCCTATTTCATTGC+AGG | + | chr1_2:37490040-37490059 | None:intergenic | 35.0% | |
| ! | TACTGCCTTGTTCTATTCTA+TGG | - | chr1_2:37490128-37490147 | Msa0069240:CDS | 35.0% |
| ATGGTCAACAAAGTCTCTTA+GGG | - | chr1_2:37490170-37490189 | Msa0069240:CDS | 35.0% | |
| TTTAGGTATCTTTGCCCTAA+AGG | - | chr1_2:37490281-37490300 | Msa0069240:CDS | 35.0% | |
| TTAGGTATCTTTGCCCTAAA+GGG | - | chr1_2:37490282-37490301 | Msa0069240:CDS | 35.0% | |
| AAAACTTACGAACAATCTGC+AGG | + | chr1_2:37490332-37490351 | None:intergenic | 35.0% | |
| AACAGTTCCAAACCTGATTA+AGG | + | chr1_2:37490495-37490514 | None:intergenic | 35.0% | |
| TGTTCCTGCAAATGTGATAA+TGG | - | chr1_2:37490511-37490530 | Msa0069240:intron | 35.0% | |
| ACATGCATTCTCTTCTTGTT+GGG | + | chr1_2:37490551-37490570 | None:intergenic | 35.0% | |
| ! | ATTGACGAATACTAGTTTGG+TGG | - | chr1_2:37490580-37490599 | Msa0069240:intron | 35.0% |
| CTCCTATATGAAAATCTGGA+TGG | - | chr1_2:37490810-37490829 | Msa0069240:intron | 35.0% | |
| GTTATCTGTTGTATGTGAAG+TGG | + | chr1_2:37491001-37491020 | None:intergenic | 35.0% | |
| TGGTGAAATTAGAGTTAACC+TGG | + | chr1_2:37491027-37491046 | None:intergenic | 35.0% | |
| TGAAGATGGTTCATCTGTTA+TGG | + | chr1_2:37491122-37491141 | None:intergenic | 35.0% | |
| CAAACATGTGAAGATGAAGA+TGG | + | chr1_2:37491136-37491155 | None:intergenic | 35.0% | |
| AAGTACCAATAGTAGCATCA+GGG | + | chr1_2:37491188-37491207 | None:intergenic | 35.0% | |
| TAAGTACCAATAGTAGCATC+AGG | + | chr1_2:37491189-37491208 | None:intergenic | 35.0% | |
| !!! | CTTTGTTGTTTTCTACTCAG+TGG | - | chr1_2:37491232-37491251 | Msa0069240:intron | 35.0% |
| TTTCATAGTTTCATATGCGG+TGG | - | chr1_2:37491260-37491279 | Msa0069240:intron | 35.0% | |
| ! | AATAAAGTAGTCCGGTTTGT+TGG | - | chr1_2:37491418-37491437 | Msa0069240:five_prime_UTR | 35.0% |
| ! | GTTGAGCTTTATGTGTGTTG+TGG | + | chr1_2:37488858-37488877 | None:intergenic | 40.0% |
| TTGGTTAATGACACCGACAA+AGG | + | chr1_2:37489255-37489274 | None:intergenic | 40.0% | |
| !! | CGGTGTCATTAACCAACTAA+TGG | - | chr1_2:37489259-37489278 | Msa0069240:intron | 40.0% |
| AAGGTCCTTAAAGAATACCC+TGG | + | chr1_2:37489414-37489433 | None:intergenic | 40.0% | |
| CTGCTAGAAGAAACGTGAAA+AGG | + | chr1_2:37489513-37489532 | None:intergenic | 40.0% | |
| ! | AATCCTGGGCTTTCTCTTTT+TGG | + | chr1_2:37489624-37489643 | None:intergenic | 40.0% |
| ! | GATTGACTCTAGACAATCCT+GGG | + | chr1_2:37489638-37489657 | None:intergenic | 40.0% |
| ! | TGATTGACTCTAGACAATCC+TGG | + | chr1_2:37489639-37489658 | None:intergenic | 40.0% |
| CAAGAATGGAGAAGCAGATT+TGG | - | chr1_2:37489657-37489676 | Msa0069240:intron | 40.0% | |
| !! | GATTTGGTGAACTTAGAAGC+AGG | - | chr1_2:37489673-37489692 | Msa0069240:intron | 40.0% |
| ! | TGCAACAGCTTCATAGGTTT+TGG | + | chr1_2:37489767-37489786 | None:intergenic | 40.0% |
| TACAACTGCAACAGCTTCAT+AGG | + | chr1_2:37489773-37489792 | None:intergenic | 40.0% | |
| CTGTTGCAGTTGTAAACAGA+AGG | - | chr1_2:37489779-37489798 | Msa0069240:intron | 40.0% | |
| TCAAAACCTTCAACCTCTGA+TGG | + | chr1_2:37489985-37490004 | None:intergenic | 40.0% | |
| !! | AGCTTTTAGGTGTCTAGTAG+AGG | - | chr1_2:37490074-37490093 | Msa0069240:CDS | 40.0% |
| !! | GGAGACATTGCTTTTGTCAA+GGG | - | chr1_2:37490102-37490121 | Msa0069240:CDS | 40.0% |
| ! | TGCCTTGTTCTATTCTATGG+AGG | - | chr1_2:37490131-37490150 | Msa0069240:CDS | 40.0% |
| ! | GCCTTGTTCTATTCTATGGA+GGG | - | chr1_2:37490132-37490151 | Msa0069240:CDS | 40.0% |
| TCCCTCCATAGAATAGAACA+AGG | + | chr1_2:37490136-37490155 | None:intergenic | 40.0% | |
| ! | GTTGACCATGATTGGTTATG+AGG | + | chr1_2:37490159-37490178 | None:intergenic | 40.0% |
| GAGACTTTGTTGACCATGAT+TGG | + | chr1_2:37490167-37490186 | None:intergenic | 40.0% | |
| CATGGTCAACAAAGTCTCTT+AGG | - | chr1_2:37490169-37490188 | Msa0069240:CDS | 40.0% | |
| TAGGTATCTTTGCCCTAAAG+GGG | - | chr1_2:37490283-37490302 | Msa0069240:CDS | 40.0% | |
| CACATGTTTGTGTTTGCCAT+AGG | - | chr1_2:37490365-37490384 | Msa0069240:CDS | 40.0% | |
| TGGTTGCTTCATCCTTAATC+AGG | - | chr1_2:37490480-37490499 | Msa0069240:CDS | 40.0% | |
| GCTTCATCCTTAATCAGGTT+TGG | - | chr1_2:37490485-37490504 | Msa0069240:CDS | 40.0% | |
| ! | TGTGCCATTATCACATTTGC+AGG | + | chr1_2:37490518-37490537 | None:intergenic | 40.0% |
| GACATGCATTCTCTTCTTGT+TGG | + | chr1_2:37490552-37490571 | None:intergenic | 40.0% | |
| ! | GTTGTTGCGAATATCGATTG+GGG | + | chr1_2:37490618-37490637 | None:intergenic | 40.0% |
| ! | GGTTGTTGCGAATATCGATT+GGG | + | chr1_2:37490619-37490638 | None:intergenic | 40.0% |
| AGGTTGTTGCGAATATCGAT+TGG | + | chr1_2:37490620-37490639 | None:intergenic | 40.0% | |
| GCAACAACCTATTTAGTCCA+AGG | - | chr1_2:37490630-37490649 | Msa0069240:intron | 40.0% | |
| CAAGTCACTCTTCAAACTCA+TGG | + | chr1_2:37490729-37490748 | None:intergenic | 40.0% | |
| CATGAGTTTGAAGAGTGACT+TGG | - | chr1_2:37490727-37490746 | Msa0069240:intron | 40.0% | |
| ACATGATTAAAAGGGTCACG+AGG | - | chr1_2:37490908-37490927 | Msa0069240:CDS | 40.0% | |
| TGTTGTATGTGAAGTGGCTT+TGG | + | chr1_2:37490995-37491014 | None:intergenic | 40.0% | |
| CATACAACAGATAACGTTCC+AGG | - | chr1_2:37491006-37491025 | Msa0069240:CDS | 40.0% | |
| AGTACCAATAGTAGCATCAG+GGG | + | chr1_2:37491187-37491206 | None:intergenic | 40.0% | |
| TTGTCTGATGTGTGCAGAAT+TGG | - | chr1_2:37491307-37491326 | Msa0069240:intron | 40.0% | |
| ! | AGGTCTAGAATCCAACAAAC+CGG | + | chr1_2:37491432-37491451 | None:intergenic | 40.0% |
| TGTTGTTGGGATCTGCATCT+TGG | + | chr1_2:37488718-37488737 | None:intergenic | 45.0% | |
| GAGTGATGACAGAAGAAGAG+AGG | + | chr1_2:37488763-37488782 | None:intergenic | 45.0% | |
| CTGTCATCACTCTCCATTCA+AGG | - | chr1_2:37488771-37488790 | Msa0069240:three_prime_UTR | 45.0% | |
| CGGCTCCAATATCGGAAAAT+GGG | - | chr1_2:37489138-37489157 | Msa0069240:CDS | 45.0% | |
| GGCTCCAATATCGGAAAATG+GGG | - | chr1_2:37489139-37489158 | Msa0069240:CDS | 45.0% | |
| TCCAATATCGGAAAATGGGG+TGG | - | chr1_2:37489142-37489161 | Msa0069240:CDS | 45.0% | |
| CCAATATCGGAAAATGGGGT+GGG | - | chr1_2:37489143-37489162 | Msa0069240:CDS | 45.0% | |
| !! | AAGGAGTGTCAGTCCTTTGT+CGG | - | chr1_2:37489239-37489258 | Msa0069240:intron | 45.0% |
| !! | TAATGGGCTACGTGTGGAAA+TGG | - | chr1_2:37489276-37489295 | Msa0069240:intron | 45.0% |
| AAATACTAACGAGTGCCTCC+AGG | - | chr1_2:37489393-37489412 | Msa0069240:intron | 45.0% | |
| AATACTAACGAGTGCCTCCA+GGG | - | chr1_2:37489394-37489413 | Msa0069240:intron | 45.0% | |
| ! | TGCCTCCAGGGTATTCTTTA+AGG | - | chr1_2:37489406-37489425 | Msa0069240:intron | 45.0% |
| GTCCTTAAAGAATACCCTGG+AGG | + | chr1_2:37489411-37489430 | None:intergenic | 45.0% | |
| CATCCAAAAAGAGAAAGCCC+AGG | - | chr1_2:37489618-37489637 | Msa0069240:intron | 45.0% | |
| AAAGGTCACAAGTCTTGCCA+TGG | - | chr1_2:37489841-37489860 | Msa0069240:intron | 45.0% | |
| TAGGTGTCTAGTAGAGGAGT+TGG | - | chr1_2:37490080-37490099 | Msa0069240:CDS | 45.0% | |
| AGGTGTCTAGTAGAGGAGTT+GGG | - | chr1_2:37490081-37490100 | Msa0069240:CDS | 45.0% | |
| !! | GGGAGACATTGCTTTTGTCA+AGG | - | chr1_2:37490101-37490120 | Msa0069240:CDS | 45.0% |
| AGGGACCTCATAACCAATCA+TGG | - | chr1_2:37490151-37490170 | Msa0069240:CDS | 45.0% | |
| AGGTATCTTTGCCCTAAAGG+GGG | - | chr1_2:37490284-37490303 | Msa0069240:CDS | 45.0% | |
| TTTCTCTGCAACCCCCTTTA+GGG | + | chr1_2:37490298-37490317 | None:intergenic | 45.0% | |
| ATTTCTCTGCAACCCCCTTT+AGG | + | chr1_2:37490299-37490318 | None:intergenic | 45.0% | |
| ! | TCATCACCAGAGCTTGGTGA+TGG | + | chr1_2:37488948-37488967 | None:intergenic | 50.0% |
| TCGTGATCATCACCAGAGCT+TGG | + | chr1_2:37488954-37488973 | None:intergenic | 50.0% | |
| TGGAACTCGTGAACTGATGG+AGG | + | chr1_2:37488984-37489003 | None:intergenic | 50.0% | |
| GGTTGGAACTCGTGAACTGA+TGG | + | chr1_2:37488987-37489006 | None:intergenic | 50.0% | |
| ! | GATGCAGAAGGTAGTGGCAA+TGG | - | chr1_2:37489038-37489057 | Msa0069240:intron | 50.0% |
| ! | CAGAAGGTAGTGGCAATGGT+GGG | - | chr1_2:37489042-37489061 | Msa0069240:intron | 50.0% |
| !! | GGCAATGGTGGGTCTATTTC+CGG | - | chr1_2:37489053-37489072 | Msa0069240:intron | 50.0% |
| TGATGGAGGAGTGGCACAAT+AGG | - | chr1_2:37489102-37489121 | Msa0069240:intron | 50.0% | |
| GCGGCTCCAATATCGGAAAA+TGG | - | chr1_2:37489137-37489156 | Msa0069240:CDS | 50.0% | |
| ! | CCCACCCCATTTTCCGATAT+TGG | + | chr1_2:37489146-37489165 | None:intergenic | 50.0% |
| ATATCGGAAAATGGGGTGGG+AGG | - | chr1_2:37489146-37489165 | Msa0069240:CDS | 50.0% | |
| AGTAAGGTGGTGCACAGTGA+GGG | - | chr1_2:37489208-37489227 | Msa0069240:CDS | 50.0% | |
| !! | ACCAACTAATGGGCTACGTG+TGG | - | chr1_2:37489270-37489289 | Msa0069240:intron | 50.0% |
| TCCACACGTAGCCCATTAGT+TGG | + | chr1_2:37489274-37489293 | None:intergenic | 50.0% | |
| ACGACTTTGTGCACCATCAG+AGG | - | chr1_2:37489969-37489988 | Msa0069240:CDS | 50.0% | |
| TGTGCACCATCAGAGGTTGA+AGG | - | chr1_2:37489976-37489995 | Msa0069240:CDS | 50.0% | |
| GGCTTGTATTCTGGTCACTC+AGG | - | chr1_2:37490051-37490070 | Msa0069240:CDS | 50.0% | |
| ! | CTGGTCACTCAGGAGCTTTT+AGG | - | chr1_2:37490061-37490080 | Msa0069240:CDS | 50.0% |
| GGGGGTTGCAGAGAAATCAA+TGG | - | chr1_2:37490302-37490321 | Msa0069240:CDS | 50.0% | |
| CACCTTTGTTGCAGTACCCA+AGG | - | chr1_2:37490880-37490899 | Msa0069240:CDS | 50.0% | |
| ! | GTCCTTGGGTACTGCAACAA+AGG | + | chr1_2:37490885-37490904 | None:intergenic | 50.0% |
| AAGGGTCACGAGGTTGTATC+TGG | - | chr1_2:37490918-37490937 | Msa0069240:CDS | 50.0% | |
| AGGGTCACGAGGTTGTATCT+GGG | - | chr1_2:37490919-37490938 | Msa0069240:CDS | 50.0% | |
| !! | GTGAAGTGGCTTTGGCTTCT+GGG | + | chr1_2:37490987-37491006 | None:intergenic | 50.0% |
| !! | TGTGAAGTGGCTTTGGCTTC+TGG | + | chr1_2:37490988-37491007 | None:intergenic | 50.0% |
| CTCACCCCTGATGCTACTAT+TGG | - | chr1_2:37491180-37491199 | Msa0069240:CDS | 50.0% | |
| !! | AGCTTGGTGATGGCAATGGC+TGG | + | chr1_2:37488938-37488957 | None:intergenic | 55.0% |
| !! | CCAGAGCTTGGTGATGGCAA+TGG | + | chr1_2:37488942-37488961 | None:intergenic | 55.0% |
| CCATTGCCATCACCAAGCTC+TGG | - | chr1_2:37488939-37488958 | Msa0069240:CDS | 55.0% | |
| CTTCCTCCAGTGGATGCAGA+AGG | - | chr1_2:37489026-37489045 | Msa0069240:intron | 55.0% | |
| CTACCTTCTGCATCCACTGG+AGG | + | chr1_2:37489032-37489051 | None:intergenic | 55.0% | |
| CCACTACCTTCTGCATCCAC+TGG | + | chr1_2:37489035-37489054 | None:intergenic | 55.0% | |
| CCAGTGGATGCAGAAGGTAG+TGG | - | chr1_2:37489032-37489051 | Msa0069240:intron | 55.0% | |
| ! | GCAGAAGGTAGTGGCAATGG+TGG | - | chr1_2:37489041-37489060 | Msa0069240:intron | 55.0% |
| CAATAGGTCTCCCGAAGCTG+CGG | - | chr1_2:37489118-37489137 | Msa0069240:CDS | 55.0% | |
| GATATTGGAGCCGCAGCTTC+GGG | + | chr1_2:37489131-37489150 | None:intergenic | 55.0% | |
| CGATATTGGAGCCGCAGCTT+CGG | + | chr1_2:37489132-37489151 | None:intergenic | 55.0% | |
| CGAAGCTGCGGCTCCAATAT+CGG | - | chr1_2:37489130-37489149 | Msa0069240:CDS | 55.0% | |
| CCATGGCACACCCAATGATC+CGG | - | chr1_2:37489169-37489188 | Msa0069240:CDS | 55.0% | |
| TCATCCGTCGCCGGATCATT+GGG | + | chr1_2:37489182-37489201 | None:intergenic | 55.0% | |
| AATGATCCGGCGACGGATGA+CGG | - | chr1_2:37489182-37489201 | Msa0069240:CDS | 55.0% | |
| GAGTAAGGTGGTGCACAGTG+AGG | - | chr1_2:37489207-37489226 | Msa0069240:CDS | 55.0% | |
| CACAGTGAGGGACGAAGTGA+AGG | - | chr1_2:37489220-37489239 | Msa0069240:CDS | 55.0% | |
| GGTCACAAGTCTTGCCATGG+AGG | - | chr1_2:37489844-37489863 | Msa0069240:intron | 55.0% | |
| CTGCTGTGGAGTAACCTCCA+TGG | + | chr1_2:37489861-37489880 | None:intergenic | 55.0% | |
| GTTACTCCACAGCAGCAGGA+TGG | - | chr1_2:37489866-37489885 | Msa0069240:intron | 55.0% | |
| GTAGTTCCATCCTGCTGCTG+TGG | + | chr1_2:37489875-37489894 | None:intergenic | 55.0% | |
| GGGTCACGAGGTTGTATCTG+GGG | - | chr1_2:37490920-37490939 | Msa0069240:CDS | 55.0% | |
| CTGGTGGCAGAAGAGGTGGT+TGG | + | chr1_2:37489004-37489023 | None:intergenic | 60.0% | |
| !! | AGTGCTGGTGGCAGAAGAGG+TGG | + | chr1_2:37489008-37489027 | None:intergenic | 60.0% |
| !! | GGAAGTGCTGGTGGCAGAAG+AGG | + | chr1_2:37489011-37489030 | None:intergenic | 60.0% |
| !! | TCCACTGGAGGAAGTGCTGG+TGG | + | chr1_2:37489020-37489039 | None:intergenic | 60.0% |
| ! | GCATCCACTGGAGGAAGTGC+TGG | + | chr1_2:37489023-37489042 | None:intergenic | 60.0% |
| TCCTCCATCACCACTGGCGA+CGG | + | chr1_2:37489092-37489111 | None:intergenic | 60.0% | |
| TGCCACTCCTCCATCACCAC+TGG | + | chr1_2:37489098-37489117 | None:intergenic | 60.0% | |
| GAAAATGGGGTGGGAGGCCA+TGG | - | chr1_2:37489152-37489171 | Msa0069240:CDS | 60.0% | |
| CCGGATCATTGGGTGTGCCA+TGG | + | chr1_2:37489172-37489191 | None:intergenic | 60.0% | |
| CACACCCAATGATCCGGCGA+CGG | - | chr1_2:37489175-37489194 | Msa0069240:CDS | 60.0% | |
| GTCATCCGTCGCCGGATCAT+TGG | + | chr1_2:37489183-37489202 | None:intergenic | 60.0% | |
| GGAGGTTACTCCACAGCAGC+AGG | - | chr1_2:37489862-37489881 | Msa0069240:intron | 60.0% | |
| GCCACCAGCACTTCCTCCAG+TGG | - | chr1_2:37489016-37489035 | Msa0069240:intron | 65.0% | |
| CGACGGGGGATCAGACTCAC+CGG | + | chr1_2:37489075-37489094 | None:intergenic | 65.0% | |
| TCCATCACCACTGGCGACGG+GGG | + | chr1_2:37489089-37489108 | None:intergenic | 65.0% | |
| CTCCATCACCACTGGCGACG+GGG | + | chr1_2:37489090-37489109 | None:intergenic | 65.0% | |
| CCTCCATCACCACTGGCGAC+GGG | + | chr1_2:37489091-37489110 | None:intergenic | 65.0% | |
| !! | CGCCAGTGGTGATGGAGGAG+TGG | - | chr1_2:37489093-37489112 | Msa0069240:intron | 65.0% |
| ! | CGACGGATGACGGCGGAGTA+AGG | - | chr1_2:37489192-37489211 | Msa0069240:CDS | 65.0% |
| ! | CGGATGACGGCGGAGTAAGG+TGG | - | chr1_2:37489195-37489214 | Msa0069240:CDS | 65.0% |
| GTCTGATCCCCCGTCGCCAG+TGG | - | chr1_2:37489079-37489098 | Msa0069240:intron | 70.0% | |
| TCCCCCGTCGCCAGTGGTGA+TGG | - | chr1_2:37489085-37489104 | Msa0069240:intron | 70.0% | |
| !! | CCCGTCGCCAGTGGTGATGG+AGG | - | chr1_2:37489088-37489107 | Msa0069240:intron | 70.0% |
| ! | GATCCGGCGACGGATGACGG+CGG | - | chr1_2:37489185-37489204 | Msa0069240:CDS | 70.0% |
| ACTCCGCCGTCATCCGTCGC+CGG | + | chr1_2:37489191-37489210 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 37488637 | 37491500 | 37488637 | ID=Msa0069240;Name=Msa0069240 |
| chr1_2 | mRNA | 37488637 | 37491500 | 37488637 | ID=Msa0069240-mRNA-1;Parent=Msa0069240;Name=Msa0069240-mRNA-1;_AED=0.06;_eAED=0.06;_QI=83|1|1|1|0.83|0.71|7|272|487 |
| chr1_2 | exon | 37488637 | 37489009 | 37488637 | ID=Msa0069240-mRNA-1:exon:11836;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37489110 | 37489243 | 37489110 | ID=Msa0069240-mRNA-1:exon:11835;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37489486 | 37489635 | 37489486 | ID=Msa0069240-mRNA-1:exon:11834;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37489795 | 37489851 | 37489795 | ID=Msa0069240-mRNA-1:exon:11833;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37489938 | 37490519 | 37489938 | ID=Msa0069240-mRNA-1:exon:11832;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37490840 | 37491206 | 37490840 | ID=Msa0069240-mRNA-1:exon:11831;Parent=Msa0069240-mRNA-1 |
| chr1_2 | exon | 37491345 | 37491500 | 37491345 | ID=Msa0069240-mRNA-1:exon:11830;Parent=Msa0069240-mRNA-1 |
| chr1_2 | five_prime_UTR | 37491418 | 37491500 | 37491418 | ID=Msa0069240-mRNA-1:five_prime_utr;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37491345 | 37491417 | 37491345 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37490840 | 37491206 | 37490840 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37489938 | 37490519 | 37489938 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37489795 | 37489851 | 37489795 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37489486 | 37489635 | 37489486 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37489110 | 37489243 | 37489110 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | CDS | 37488909 | 37489009 | 37488909 | ID=Msa0069240-mRNA-1:cds;Parent=Msa0069240-mRNA-1 |
| chr1_2 | three_prime_UTR | 37488637 | 37488908 | 37488637 | ID=Msa0069240-mRNA-1:three_prime_utr;Parent=Msa0069240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
