Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037030 | sp|Q921I1|TRFE_MOUSE | 32.432 | 333 | 177 | 18 | 112 | 425 | 354 | 657 | 3.06e-30 | 128 |
| Msa0037030 | sp|Q921I1|TRFE_MOUSE | 28.108 | 370 | 222 | 16 | 115 | 463 | 22 | 368 | 1.54e-20 | 98.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037030 | Msa0069240 | 0.866553 | 2.621437e-65 | -8.615850e-47 |
| Msa0037030 | Msa0177140 | 0.824481 | 7.886350e-54 | -8.615850e-47 |
| Msa0037030 | Msa0548100 | 0.825675 | 4.119507e-54 | -8.615850e-47 |
| Msa0037030 | Msa0603120 | 0.817162 | 3.805106e-52 | -8.615850e-47 |
| Msa0037030 | Msa0607330 | 0.800093 | 1.694422e-48 | -8.615850e-47 |
| Msa0037030 | Msa0644150 | 0.828007 | 1.141881e-54 | -8.615850e-47 |
| Msa0037030 | Msa0695560 | 0.803111 | 4.074657e-49 | -8.615850e-47 |
| Msa0037030 | Msa0980580 | 0.806575 | 7.697635e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037030 | MtrunA17_Chr1g0199911 | 94.462 | 325 | 13 | 1 | 90 | 409 | 3 | 327 | 0.0 | 641 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 148 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAAGTGGCTTTGGCTTC+TGG | 0.139532 | 1_1:-65941342 | None:intergenic |
| CATGGTCAACAAAGTCTCTT+AGG | 0.218867 | 1_1:+65940526 | Msa0037030:CDS |
| AAACAACAAAGTCTCTATTT+TGG | 0.233000 | 1_1:-65941577 | None:intergenic |
| TGTCATTAGCTCATCATATT+AGG | 0.236916 | 1_1:-65941693 | None:intergenic |
| TGCAACAGCTTCATAGGTTT+TGG | 0.237405 | 1_1:-65940121 | None:intergenic |
| AAGGACTAGACATGATTAAA+AGG | 0.238659 | 1_1:+65941256 | Msa0037030:CDS |
| GCGGCTCCAATATCGGAAAA+TGG | 0.240046 | 1_1:+65939490 | Msa0037030:CDS |
| GGCAATGGTGGGTCTATTTC+CGG | 0.269331 | 1_1:+65939406 | Msa0037030:CDS |
| AAGGGTCACGAGGTTGTATC+TGG | 0.269966 | 1_1:+65941275 | Msa0037030:CDS |
| GTCATCCGTCGCCGGATCAT+TGG | 0.270158 | 1_1:-65939533 | None:intergenic |
| TACTGCCTTGTTCTATTCTA+TGG | 0.274106 | 1_1:+65940485 | Msa0037030:CDS |
| AATGAAACCTGCAATGAAAT+AGG | 0.296785 | 1_1:+65940387 | Msa0037030:CDS |
| GTGAAGTGGCTTTGGCTTCT+GGG | 0.302414 | 1_1:-65941341 | None:intergenic |
| TGTGCCATTATCACATTTGC+AGG | 0.322187 | 1_1:-65940872 | None:intergenic |
| ATACAAGCCTATTTCATTGC+AGG | 0.329472 | 1_1:-65940394 | None:intergenic |
| CAAGAATGGAGAAGCAGATT+TGG | 0.336001 | 1_1:+65940014 | Msa0037030:CDS |
| TTTAATCATGTCTAGTCCTT+GGG | 0.353400 | 1_1:-65941253 | None:intergenic |
| GTGCTTGATTTCTTTATAGT+AGG | 0.358155 | 1_1:+65941734 | Msa0037030:three_prime_UTR |
| CGATATTGGAGCCGCAGCTT+CGG | 0.361064 | 1_1:-65939482 | None:intergenic |
| TGTTGTATGTGAAGTGGCTT+TGG | 0.366669 | 1_1:-65941349 | None:intergenic |
| GAGACTTTGTTGACCATGAT+TGG | 0.374237 | 1_1:-65940521 | None:intergenic |
| TACAACTGCAACAGCTTCAT+AGG | 0.375227 | 1_1:-65940127 | None:intergenic |
| TTAGGTATCTTTGCCCTAAA+GGG | 0.379845 | 1_1:+65940639 | Msa0037030:intron |
| AACATTGACGAATACTAGTT+TGG | 0.381344 | 1_1:+65940934 | Msa0037030:CDS |
| GATATTGGAGCCGCAGCTTC+GGG | 0.382279 | 1_1:-65939481 | None:intergenic |
| CGAAGCTGCGGCTCCAATAT+CGG | 0.384037 | 1_1:+65939483 | Msa0037030:CDS |
| GACATGCATTCTCTTCTTGT+TGG | 0.385917 | 1_1:-65940906 | None:intergenic |
| CGGCTCCAATATCGGAAAAT+GGG | 0.387560 | 1_1:+65939491 | Msa0037030:CDS |
| TTGTCTGATGTGTGCAGAAT+TGG | 0.390343 | 1_1:+65941664 | Msa0037030:three_prime_UTR |
| TTGGTCAAAAGAGAACAAAA+TGG | 0.399291 | 1_1:-65939048 | None:intergenic |
| CATACAACAGATAACGTTCC+AGG | 0.403749 | 1_1:+65941363 | Msa0037030:CDS |
| ACATGCATTCTCTTCTTGTT+GGG | 0.406977 | 1_1:-65940905 | None:intergenic |
| TAACGGGCTACGTGTGGAAA+TGG | 0.408628 | 1_1:+65939629 | Msa0037030:CDS |
| AAGAAGAGAAACAGTGTTGT+TGG | 0.411460 | 1_1:-65939081 | None:intergenic |
| AGGTGTCTAGTAGAGGAGTT+GGG | 0.413895 | 1_1:+65940438 | Msa0037030:CDS |
| CTGTCATCACTCTCCATTCA+AGG | 0.418562 | 1_1:+65939123 | Msa0037030:CDS |
| TAGGTGTCTAGTAGAGGAGT+TGG | 0.421638 | 1_1:+65940437 | Msa0037030:CDS |
| AATAAAGTAGTCCGGTTTGT+TGG | 0.428525 | 1_1:+65941773 | Msa0037030:three_prime_UTR |
| CTCACCCCTGATGCTACTAT+TGG | 0.428861 | 1_1:+65941537 | Msa0037030:CDS |
| TGTTCCTGCAAATGTGATAA+TGG | 0.432281 | 1_1:+65940868 | Msa0037030:CDS |
| GAAAATGGGGTGGGAGGCCA+TGG | 0.434127 | 1_1:+65939505 | Msa0037030:CDS |
| TAAGTACCAATAGTAGCATC+AGG | 0.438718 | 1_1:-65941543 | None:intergenic |
| TCATCCGTCGCCGGATCATT+GGG | 0.443613 | 1_1:-65939532 | None:intergenic |
| CCTCCATCACCACTGGCGAC+GGG | 0.445644 | 1_1:-65939441 | None:intergenic |
| AATGAAATAGGCTTGTATTC+TGG | 0.456061 | 1_1:+65940399 | Msa0037030:CDS |
| CCATGGCACACCCAATGATC+CGG | 0.457452 | 1_1:+65939522 | Msa0037030:CDS |
| TCCTCCATCACCACTGGCGA+CGG | 0.457816 | 1_1:-65939442 | None:intergenic |
| TTTAGGTATCTTTGCCCTAA+AGG | 0.460465 | 1_1:+65940638 | Msa0037030:intron |
| GGTTGTTGCGAATATCGATT+GGG | 0.462387 | 1_1:-65940973 | None:intergenic |
| GTTGACCATGATTGGTTATG+AGG | 0.462653 | 1_1:-65940513 | None:intergenic |
| TGATGGAGGAGTGGCACAAT+AGG | 0.464742 | 1_1:+65939455 | Msa0037030:CDS |
| CGACGGATGACGGCGGAGTA+AGG | 0.464895 | 1_1:+65939545 | Msa0037030:CDS |
| GCATCCACTGGAGGAAGTGC+TGG | 0.476671 | 1_1:-65939373 | None:intergenic |
| AGAAGAGAAACAGTGTTGTT+GGG | 0.479019 | 1_1:-65939080 | None:intergenic |
| TGATTGACTCTAGACAATCC+TGG | 0.479542 | 1_1:-65939993 | None:intergenic |
| GCCTTGTTCTATTCTATGGA+GGG | 0.487961 | 1_1:+65940489 | Msa0037030:CDS |
| AGCTTGGTGATGGCAATGGC+TGG | 0.489751 | 1_1:-65939288 | None:intergenic |
| CATATTGTTGTTGATGTCAA+CGG | 0.492151 | 1_1:-65939005 | None:intergenic |
| TGGTCAAAAGAGAACAAAAT+GGG | 0.498456 | 1_1:-65939047 | None:intergenic |
| GGAGGTTACTCCACAGCAGC+AGG | 0.505464 | 1_1:+65940219 | Msa0037030:CDS |
| CTCCATCACCACTGGCGACG+GGG | 0.508711 | 1_1:-65939440 | None:intergenic |
| AAGGAGTGTCAGTCCTTTGT+CGG | 0.509813 | 1_1:+65939592 | Msa0037030:CDS |
| CCGGATCATTGGGTGTGCCA+TGG | 0.510588 | 1_1:-65939522 | None:intergenic |
| AATGATCCGGCGACGGATGA+CGG | 0.511835 | 1_1:+65939535 | Msa0037030:CDS |
| TGTTGTTGGGATCTGCATCT+TGG | 0.513681 | 1_1:-65939067 | None:intergenic |
| GGTGTCATTAACCAACTAAC+GGG | 0.514807 | 1_1:+65939613 | Msa0037030:CDS |
| ATGATAATAATATATCTCAT+TGG | 0.514942 | 1_1:-65940097 | None:intergenic |
| ATAATATATCTCATTGGCTA+TGG | 0.515079 | 1_1:-65940091 | None:intergenic |
| GAGTGATGACAGAAGAAGAG+AGG | 0.516282 | 1_1:-65939112 | None:intergenic |
| TCCATCACCACTGGCGACGG+GGG | 0.521238 | 1_1:-65939439 | None:intergenic |
| TCCACACGTAGCCCGTTAGT+TGG | 0.521998 | 1_1:-65939624 | None:intergenic |
| CACCTTTGTTGCAGTACCCA+AGG | 0.523484 | 1_1:+65941237 | Msa0037030:intron |
| ACTCCGCCGTCATCCGTCGC+CGG | 0.530133 | 1_1:-65939541 | None:intergenic |
| CCACTACCTTCTGCATCCAC+TGG | 0.530575 | 1_1:-65939385 | None:intergenic |
| TGTCTAGAGTCAATCAAGAA+TGG | 0.532295 | 1_1:+65940000 | Msa0037030:CDS |
| AGGTCTAGAATCCAACAAAC+CGG | 0.533196 | 1_1:-65941784 | None:intergenic |
| AGGTTGTTGCGAATATCGAT+TGG | 0.533382 | 1_1:-65940974 | None:intergenic |
| GCCACCAGCACTTCCTCCAG+TGG | 0.534678 | 1_1:+65939369 | Msa0037030:CDS |
| TCCAATATCGGAAAATGGGG+TGG | 0.535404 | 1_1:+65939495 | Msa0037030:CDS |
| ATGGTCAACAAAGTCTCTTA+GGG | 0.536352 | 1_1:+65940527 | Msa0037030:CDS |
| GATTGACTCTAGACAATCCT+GGG | 0.539227 | 1_1:-65939992 | None:intergenic |
| AGGGTCACGAGGTTGTATCT+GGG | 0.539966 | 1_1:+65941276 | Msa0037030:CDS |
| GTAGTTCCATCCTGCTGCTG+TGG | 0.542388 | 1_1:-65940229 | None:intergenic |
| AAAACTTACGAACAATCTGC+AGG | 0.544949 | 1_1:-65940686 | None:intergenic |
| CCATTGCCATCACCAAGCTC+TGG | 0.546468 | 1_1:+65939292 | Msa0037030:CDS |
| TGCCACTCCTCCATCACCAC+TGG | 0.547171 | 1_1:-65939448 | None:intergenic |
| CTGTTGCAGTTGTAAACAGA+AGG | 0.548368 | 1_1:+65940136 | Msa0037030:CDS |
| AGGACTAGACATGATTAAAA+GGG | 0.550810 | 1_1:+65941257 | Msa0037030:CDS |
| ATTGACGAATACTAGTTTGG+TGG | 0.551045 | 1_1:+65940937 | Msa0037030:CDS |
| GGAAGTGCTGGTGGCAGAAG+AGG | 0.551309 | 1_1:-65939361 | None:intergenic |
| TGCCTTGTTCTATTCTATGG+AGG | 0.553128 | 1_1:+65940488 | Msa0037030:CDS |
| AGGGACCTCATAACCAATCA+TGG | 0.554719 | 1_1:+65940508 | Msa0037030:CDS |
| TACTTTCATAGTTTCATATG+CGG | 0.555190 | 1_1:+65941614 | Msa0037030:three_prime_UTR |
| TCAAAACCTTCAACCTCTGA+TGG | 0.557623 | 1_1:-65940339 | None:intergenic |
| TAAAGAGTAATAAAGTAGTC+CGG | 0.558650 | 1_1:+65941765 | Msa0037030:three_prime_UTR |
| ATCAGTTTAATGGACTTCAA+AGG | 0.562705 | 1_1:+65940180 | Msa0037030:CDS |
| ATGCATGTGTATACCTTGAA+TGG | 0.563332 | 1_1:-65939136 | None:intergenic |
| GCAGAAGGTAGTGGCAATGG+TGG | 0.564571 | 1_1:+65939394 | Msa0037030:CDS |
| CACAGTGAGGGACGAAGTGA+AGG | 0.565435 | 1_1:+65939573 | Msa0037030:CDS |
| CGCCAGTGGTGATGGAGGAG+TGG | 0.565858 | 1_1:+65939446 | Msa0037030:CDS |
| GCAACAACCTATTTAGTCCA+AGG | 0.567581 | 1_1:+65940987 | Msa0037030:CDS |
| CCCGTCGCCAGTGGTGATGG+AGG | 0.572332 | 1_1:+65939441 | Msa0037030:CDS |
| TGTGCACCATCAGAGGTTGA+AGG | 0.574026 | 1_1:+65940333 | Msa0037030:CDS |
| GGCTTGTATTCTGGTCACTC+AGG | 0.574907 | 1_1:+65940408 | Msa0037030:CDS |
| CGGTGTCATTAACCAACTAA+CGG | 0.576040 | 1_1:+65939612 | Msa0037030:CDS |
| TTTGATACATGTAATGTATG+TGG | 0.576499 | 1_1:+65940357 | Msa0037030:CDS |
| AGGTATCTTTGCCCTAAAGG+GGG | 0.576544 | 1_1:+65940641 | Msa0037030:intron |
| GTTATCTGTTGTATGTGAAG+TGG | 0.578455 | 1_1:-65941355 | None:intergenic |
| GGTTGGAACTCGTGAACTGA+TGG | 0.578796 | 1_1:-65939337 | None:intergenic |
| CAAACATGTGAAGATGAAGA+TGG | 0.580809 | 1_1:-65941490 | None:intergenic |
| AGTAAGGTGGTGCACAGTGA+GGG | 0.580947 | 1_1:+65939561 | Msa0037030:CDS |
| ACCAACTAACGGGCTACGTG+TGG | 0.581926 | 1_1:+65939623 | Msa0037030:CDS |
| GATTTGGTGAACTTAGAAGC+AGG | 0.584360 | 1_1:+65940030 | Msa0037030:CDS |
| AAAGGTCACAAGTCTTGCCA+TGG | 0.587608 | 1_1:+65940198 | Msa0037030:CDS |
| ACGACTTTGTGCACCATCAG+AGG | 0.587718 | 1_1:+65940326 | Msa0037030:CDS |
| CCAGTGGATGCAGAAGGTAG+TGG | 0.590987 | 1_1:+65939385 | Msa0037030:CDS |
| TCATCACCAGAGCTTGGTGA+TGG | 0.592564 | 1_1:-65939298 | None:intergenic |
| TAGGTATCTTTGCCCTAAAG+GGG | 0.593324 | 1_1:+65940640 | Msa0037030:intron |
| CCAATATCGGAAAATGGGGT+GGG | 0.596208 | 1_1:+65939496 | Msa0037030:CDS |
| CCAGAGCTTGGTGATGGCAA+TGG | 0.596900 | 1_1:-65939292 | None:intergenic |
| CACACCCAATGATCCGGCGA+CGG | 0.598298 | 1_1:+65939528 | Msa0037030:CDS |
| TTTCATAGTTTCATATGCGG+TGG | 0.598662 | 1_1:+65941617 | Msa0037030:three_prime_UTR |
| ATATCGGAAAATGGGGTGGG+AGG | 0.604798 | 1_1:+65939499 | Msa0037030:CDS |
| TCGTGATCATCACCAGAGCT+TGG | 0.607923 | 1_1:-65939304 | None:intergenic |
| TCCACTGGAGGAAGTGCTGG+TGG | 0.612234 | 1_1:-65939370 | None:intergenic |
| AAGTACCAATAGTAGCATCA+GGG | 0.612796 | 1_1:-65941542 | None:intergenic |
| TTGGTTAATGACACCGACAA+AGG | 0.623235 | 1_1:-65939605 | None:intergenic |
| CAATAGGTCTCCCGAAGCTG+CGG | 0.624314 | 1_1:+65939471 | Msa0037030:CDS |
| GTTACTCCACAGCAGCAGGA+TGG | 0.625433 | 1_1:+65940223 | Msa0037030:CDS |
| GAGTAAGGTGGTGCACAGTG+AGG | 0.634640 | 1_1:+65939560 | Msa0037030:CDS |
| CTACCTTCTGCATCCACTGG+AGG | 0.635103 | 1_1:-65939382 | None:intergenic |
| CTGCTGTGGAGTAACCTCCA+TGG | 0.636623 | 1_1:-65940215 | None:intergenic |
| CTTCCTCCAGTGGATGCAGA+AGG | 0.638589 | 1_1:+65939379 | Msa0037030:CDS |
| CAGAAGGTAGTGGCAATGGT+GGG | 0.642384 | 1_1:+65939395 | Msa0037030:CDS |
| CGGATGACGGCGGAGTAAGG+TGG | 0.643445 | 1_1:+65939548 | Msa0037030:CDS |
| GGCTCCAATATCGGAAAATG+GGG | 0.648028 | 1_1:+65939492 | Msa0037030:CDS |
| GATGCAGAAGGTAGTGGCAA+TGG | 0.649248 | 1_1:+65939391 | Msa0037030:CDS |
| GGGTCACGAGGTTGTATCTG+GGG | 0.649370 | 1_1:+65941277 | Msa0037030:CDS |
| GGTCACAAGTCTTGCCATGG+AGG | 0.651029 | 1_1:+65940201 | Msa0037030:CDS |
| TGTTGCAGTTGTAAACAGAA+GGG | 0.658915 | 1_1:+65940137 | Msa0037030:CDS |
| AGTGCTGGTGGCAGAAGAGG+TGG | 0.660010 | 1_1:-65939358 | None:intergenic |
| AGTACCAATAGTAGCATCAG+GGG | 0.663504 | 1_1:-65941541 | None:intergenic |
| CTGGTGGCAGAAGAGGTGGT+TGG | 0.678794 | 1_1:-65939354 | None:intergenic |
| TGGAACTCGTGAACTGATGG+AGG | 0.684922 | 1_1:-65939334 | None:intergenic |
| GATCCGGCGACGGATGACGG+CGG | 0.685048 | 1_1:+65939538 | Msa0037030:CDS |
| TCCCTCCATAGAATAGAACA+AGG | 0.696491 | 1_1:-65940490 | None:intergenic |
| GTTGTTGCGAATATCGATTG+GGG | 0.707340 | 1_1:-65940972 | None:intergenic |
| ACATGATTAAAAGGGTCACG+AGG | 0.726909 | 1_1:+65941265 | Msa0037030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGATAATAATATATCTCAT+TGG | - | chr1_1:65940100-65940119 | None:intergenic | 15.0% |
| !!! | AAATTTTTAATGTGATTGAT+GGG | - | chr1_1:65940255-65940274 | None:intergenic | 15.0% |
| !!! | TAAATTTTTAATGTGATTGA+TGG | - | chr1_1:65940256-65940275 | None:intergenic | 15.0% |
| !!! | TTTGTTTCCATATATTTTTC+AGG | + | chr1_1:65939262-65939281 | Msa0037030:intron | 20.0% |
| !! | TTAGTATTTCCCTTTATTAT+TGG | - | chr1_1:65939739-65939758 | None:intergenic | 20.0% |
| !!! | ATAGTTGTGTCTAAAATTTA+AGG | - | chr1_1:65939790-65939809 | None:intergenic | 20.0% |
| !! | ATTTATGCTTAGTAGTTAAT+AGG | + | chr1_1:65939808-65939827 | Msa0037030:intron | 20.0% |
| !! | CAATGAAAAAATCAGTTTAA+TGG | + | chr1_1:65940170-65940189 | Msa0037030:CDS | 20.0% |
| !!! | AATTTTTAATGTGATTGATG+GGG | - | chr1_1:65940254-65940273 | None:intergenic | 20.0% |
| !! | TGATGAAAAAATGAATGATA+AGG | + | chr1_1:65940281-65940300 | Msa0037030:CDS | 20.0% |
| !!! | TCAATCAATTGAATGATTTT+AGG | + | chr1_1:65940621-65940640 | Msa0037030:intron | 20.0% |
| !! | AAAAAAATATCTTACACCTA+TGG | - | chr1_1:65940741-65940760 | None:intergenic | 20.0% |
| !! | GTTAATGTTAAAATGATAAC+AGG | - | chr1_1:65940811-65940830 | None:intergenic | 20.0% |
| !!! | ATTTTAACATTAACTAGAGT+TGG | + | chr1_1:65940817-65940836 | Msa0037030:intron | 20.0% |
| !!! | TTACAATGTTTTTCTAAATC+TGG | + | chr1_1:65941109-65941128 | Msa0037030:intron | 20.0% |
| !! | AATTTAATAACCCAACTAAA+TGG | - | chr1_1:65941404-65941423 | None:intergenic | 20.0% |
| ! | TTGATGTTGTCCAATAATAA+AGG | + | chr1_1:65939726-65939745 | Msa0037030:intron | 25.0% |
| ! | TGATGTTGTCCAATAATAAA+GGG | + | chr1_1:65939727-65939746 | Msa0037030:intron | 25.0% |
| !! | ATAATATATCTCATTGGCTA+TGG | - | chr1_1:65940094-65940113 | None:intergenic | 25.0% |
| ! | TTTGATACATGTAATGTATG+TGG | + | chr1_1:65940357-65940376 | Msa0037030:CDS | 25.0% |
| ! | CAATTGATTGATATTAGTTG+AGG | - | chr1_1:65940612-65940631 | None:intergenic | 25.0% |
| !! | TATTTTACCTTGGACTAAAT+AGG | - | chr1_1:65940997-65941016 | None:intergenic | 25.0% |
| ! | TATTTAGTCCAAGGTAAAAT+AGG | + | chr1_1:65940996-65941015 | Msa0037030:intron | 25.0% |
| !! | AAGATATTCCTATTTTACCT+TGG | - | chr1_1:65941007-65941026 | None:intergenic | 25.0% |
| ! | TTTATATTGTTGTCTACAAC+AGG | + | chr1_1:65941035-65941054 | Msa0037030:intron | 25.0% |
| ! | AAAACTCCTATATGAAAATC+TGG | + | chr1_1:65941163-65941182 | Msa0037030:intron | 25.0% |
| ! | TCTAATTTCACCATTTAGTT+GGG | + | chr1_1:65941391-65941410 | Msa0037030:intron | 25.0% |
| !! | AAACAACAAAGTCTCTATTT+TGG | - | chr1_1:65941580-65941599 | None:intergenic | 25.0% |
| ! | TACTTTCATAGTTTCATATG+CGG | + | chr1_1:65941614-65941633 | Msa0037030:three_prime_UTR | 25.0% |
| ! | TAAAGAGTAATAAAGTAGTC+CGG | + | chr1_1:65941765-65941784 | Msa0037030:three_prime_UTR | 25.0% |
| !!! | TAGACCTTGATATATTTTTG+AGG | + | chr1_1:65941800-65941819 | Msa0037030:three_prime_UTR | 25.0% |
| !!! | AGACCTTGATATATTTTTGA+GGG | + | chr1_1:65941801-65941820 | Msa0037030:three_prime_UTR | 25.0% |
| ! | CATATTGTTGTTGATGTCAA+CGG | - | chr1_1:65939008-65939027 | None:intergenic | 30.0% |
| TGGTCAAAAGAGAACAAAAT+GGG | - | chr1_1:65939050-65939069 | None:intergenic | 30.0% | |
| TTGGTCAAAAGAGAACAAAA+TGG | - | chr1_1:65939051-65939070 | None:intergenic | 30.0% | |
| !! | TAGTGTTACTCTTTTCAAAC+AGG | + | chr1_1:65939181-65939200 | Msa0037030:intron | 30.0% |
| CTGGAAACCTGAAAAATATA+TGG | - | chr1_1:65939272-65939291 | None:intergenic | 30.0% | |
| TGGATGCTAATGACATAAAA+AGG | - | chr1_1:65939961-65939980 | None:intergenic | 30.0% | |
| !! | ATCAGTTTAATGGACTTCAA+AGG | + | chr1_1:65940180-65940199 | Msa0037030:CDS | 30.0% |
| AATGAAACCTGCAATGAAAT+AGG | + | chr1_1:65940387-65940406 | Msa0037030:CDS | 30.0% | |
| AATGAAATAGGCTTGTATTC+TGG | + | chr1_1:65940399-65940418 | Msa0037030:CDS | 30.0% | |
| CATGAAAAGTTTATTAGGCA+AGG | - | chr1_1:65940567-65940586 | None:intergenic | 30.0% | |
| CATCGCATGAAAAGTTTATT+AGG | - | chr1_1:65940572-65940591 | None:intergenic | 30.0% | |
| TGCAATTAGAAACATGCATT+AGG | - | chr1_1:65940767-65940786 | None:intergenic | 30.0% | |
| AACATTGACGAATACTAGTT+TGG | + | chr1_1:65940934-65940953 | Msa0037030:CDS | 30.0% | |
| ! | TTCCATCCAGATTTTCATAT+AGG | - | chr1_1:65941172-65941191 | None:intergenic | 30.0% |
| TTTAATCATGTCTAGTCCTT+GGG | - | chr1_1:65941256-65941275 | None:intergenic | 30.0% | |
| ! | TTTTAATCATGTCTAGTCCT+TGG | - | chr1_1:65941257-65941276 | None:intergenic | 30.0% |
| AAGGACTAGACATGATTAAA+AGG | + | chr1_1:65941256-65941275 | Msa0037030:CDS | 30.0% | |
| AGGACTAGACATGATTAAAA+GGG | + | chr1_1:65941257-65941276 | Msa0037030:CDS | 30.0% | |
| CTCTAATTTCACCATTTAGT+TGG | + | chr1_1:65941390-65941409 | Msa0037030:intron | 30.0% | |
| TGTCATTAGCTCATCATATT+AGG | - | chr1_1:65941696-65941715 | None:intergenic | 30.0% | |
| GTGCTTGATTTCTTTATAGT+AGG | + | chr1_1:65941734-65941753 | Msa0037030:three_prime_UTR | 30.0% | |
| AGTCCCTCAAAAATATATCA+AGG | - | chr1_1:65941807-65941826 | None:intergenic | 30.0% | |
| ! | AGAAGAGAAACAGTGTTGTT+GGG | - | chr1_1:65939083-65939102 | None:intergenic | 35.0% |
| AAGAAGAGAAACAGTGTTGT+TGG | - | chr1_1:65939084-65939103 | None:intergenic | 35.0% | |
| ATGCATGTGTATACCTTGAA+TGG | - | chr1_1:65939139-65939158 | None:intergenic | 35.0% | |
| ! | TTGAGCTTTATGTGTGTTGT+GGG | - | chr1_1:65939210-65939229 | None:intergenic | 35.0% |
| ! | TGTCTAGAGTCAATCAAGAA+TGG | + | chr1_1:65940000-65940019 | Msa0037030:CDS | 35.0% |
| TGTTGCAGTTGTAAACAGAA+GGG | + | chr1_1:65940137-65940156 | Msa0037030:CDS | 35.0% | |
| ATACAAGCCTATTTCATTGC+AGG | - | chr1_1:65940397-65940416 | None:intergenic | 35.0% | |
| ! | TACTGCCTTGTTCTATTCTA+TGG | + | chr1_1:65940485-65940504 | Msa0037030:CDS | 35.0% |
| ATGGTCAACAAAGTCTCTTA+GGG | + | chr1_1:65940527-65940546 | Msa0037030:CDS | 35.0% | |
| TTTCATGCGATGCATAAAGT+AGG | + | chr1_1:65940580-65940599 | Msa0037030:intron | 35.0% | |
| TTTAGGTATCTTTGCCCTAA+AGG | + | chr1_1:65940638-65940657 | Msa0037030:intron | 35.0% | |
| TTAGGTATCTTTGCCCTAAA+GGG | + | chr1_1:65940639-65940658 | Msa0037030:intron | 35.0% | |
| AAAACTTACGAACAATCTGC+AGG | - | chr1_1:65940689-65940708 | None:intergenic | 35.0% | |
| AACAGTTCCAAACCTGATTA+AGG | - | chr1_1:65940852-65940871 | None:intergenic | 35.0% | |
| TGTTCCTGCAAATGTGATAA+TGG | + | chr1_1:65940868-65940887 | Msa0037030:CDS | 35.0% | |
| ACATGCATTCTCTTCTTGTT+GGG | - | chr1_1:65940908-65940927 | None:intergenic | 35.0% | |
| ! | ATTGACGAATACTAGTTTGG+TGG | + | chr1_1:65940937-65940956 | Msa0037030:CDS | 35.0% |
| CTCCTATATGAAAATCTGGA+TGG | + | chr1_1:65941167-65941186 | Msa0037030:intron | 35.0% | |
| GTTATCTGTTGTATGTGAAG+TGG | - | chr1_1:65941358-65941377 | None:intergenic | 35.0% | |
| TGGTGAAATTAGAGTTAACC+TGG | - | chr1_1:65941384-65941403 | None:intergenic | 35.0% | |
| TGAAGATGGTTCATCTGTTA+TGG | - | chr1_1:65941479-65941498 | None:intergenic | 35.0% | |
| CAAACATGTGAAGATGAAGA+TGG | - | chr1_1:65941493-65941512 | None:intergenic | 35.0% | |
| AAGTACCAATAGTAGCATCA+GGG | - | chr1_1:65941545-65941564 | None:intergenic | 35.0% | |
| TAAGTACCAATAGTAGCATC+AGG | - | chr1_1:65941546-65941565 | None:intergenic | 35.0% | |
| !!! | CTTTGTTGTTTTCTACTCAG+TGG | + | chr1_1:65941589-65941608 | Msa0037030:three_prime_UTR | 35.0% |
| TTTCATAGTTTCATATGCGG+TGG | + | chr1_1:65941617-65941636 | Msa0037030:three_prime_UTR | 35.0% | |
| ! | AATAAAGTAGTCCGGTTTGT+TGG | + | chr1_1:65941773-65941792 | Msa0037030:three_prime_UTR | 35.0% |
| ! | GTTGAGCTTTATGTGTGTTG+TGG | - | chr1_1:65939211-65939230 | None:intergenic | 40.0% |
| TTGGTTAATGACACCGACAA+AGG | - | chr1_1:65939608-65939627 | None:intergenic | 40.0% | |
| !! | CGGTGTCATTAACCAACTAA+CGG | + | chr1_1:65939612-65939631 | Msa0037030:CDS | 40.0% |
| !! | GGTGTCATTAACCAACTAAC+GGG | + | chr1_1:65939613-65939632 | Msa0037030:CDS | 40.0% |
| AAGGTCCTTAAAGAATACCC+TGG | - | chr1_1:65939771-65939790 | None:intergenic | 40.0% | |
| CTGCTAGAAGAAACGTGAAA+AGG | - | chr1_1:65939870-65939889 | None:intergenic | 40.0% | |
| ! | AATCCTGGGCTTTCTCTTTT+TGG | - | chr1_1:65939981-65940000 | None:intergenic | 40.0% |
| ! | GATTGACTCTAGACAATCCT+GGG | - | chr1_1:65939995-65940014 | None:intergenic | 40.0% |
| ! | TGATTGACTCTAGACAATCC+TGG | - | chr1_1:65939996-65940015 | None:intergenic | 40.0% |
| CAAGAATGGAGAAGCAGATT+TGG | + | chr1_1:65940014-65940033 | Msa0037030:CDS | 40.0% | |
| !! | GATTTGGTGAACTTAGAAGC+AGG | + | chr1_1:65940030-65940049 | Msa0037030:CDS | 40.0% |
| ! | TGCAACAGCTTCATAGGTTT+TGG | - | chr1_1:65940124-65940143 | None:intergenic | 40.0% |
| TACAACTGCAACAGCTTCAT+AGG | - | chr1_1:65940130-65940149 | None:intergenic | 40.0% | |
| CTGTTGCAGTTGTAAACAGA+AGG | + | chr1_1:65940136-65940155 | Msa0037030:CDS | 40.0% | |
| TCAAAACCTTCAACCTCTGA+TGG | - | chr1_1:65940342-65940361 | None:intergenic | 40.0% | |
| !! | AGCTTTTAGGTGTCTAGTAG+AGG | + | chr1_1:65940431-65940450 | Msa0037030:CDS | 40.0% |
| !! | GGAGACATTGCTTTTGTCAA+GGG | + | chr1_1:65940459-65940478 | Msa0037030:CDS | 40.0% |
| ! | TGCCTTGTTCTATTCTATGG+AGG | + | chr1_1:65940488-65940507 | Msa0037030:CDS | 40.0% |
| ! | GCCTTGTTCTATTCTATGGA+GGG | + | chr1_1:65940489-65940508 | Msa0037030:CDS | 40.0% |
| TCCCTCCATAGAATAGAACA+AGG | - | chr1_1:65940493-65940512 | None:intergenic | 40.0% | |
| ! | GTTGACCATGATTGGTTATG+AGG | - | chr1_1:65940516-65940535 | None:intergenic | 40.0% |
| GAGACTTTGTTGACCATGAT+TGG | - | chr1_1:65940524-65940543 | None:intergenic | 40.0% | |
| CATGGTCAACAAAGTCTCTT+AGG | + | chr1_1:65940526-65940545 | Msa0037030:CDS | 40.0% | |
| TAGGTATCTTTGCCCTAAAG+GGG | + | chr1_1:65940640-65940659 | Msa0037030:intron | 40.0% | |
| CACATGTTTGTGTTTGCCAT+AGG | + | chr1_1:65940722-65940741 | Msa0037030:intron | 40.0% | |
| TGGTTGCTTCATCCTTAATC+AGG | + | chr1_1:65940837-65940856 | Msa0037030:intron | 40.0% | |
| GCTTCATCCTTAATCAGGTT+TGG | + | chr1_1:65940842-65940861 | Msa0037030:intron | 40.0% | |
| ! | TGTGCCATTATCACATTTGC+AGG | - | chr1_1:65940875-65940894 | None:intergenic | 40.0% |
| GACATGCATTCTCTTCTTGT+TGG | - | chr1_1:65940909-65940928 | None:intergenic | 40.0% | |
| ! | GTTGTTGCGAATATCGATTG+GGG | - | chr1_1:65940975-65940994 | None:intergenic | 40.0% |
| ! | GGTTGTTGCGAATATCGATT+GGG | - | chr1_1:65940976-65940995 | None:intergenic | 40.0% |
| AGGTTGTTGCGAATATCGAT+TGG | - | chr1_1:65940977-65940996 | None:intergenic | 40.0% | |
| GCAACAACCTATTTAGTCCA+AGG | + | chr1_1:65940987-65941006 | Msa0037030:CDS | 40.0% | |
| CAAGTCACTCTTCAAACTCA+TGG | - | chr1_1:65941086-65941105 | None:intergenic | 40.0% | |
| CATGAGTTTGAAGAGTGACT+TGG | + | chr1_1:65941084-65941103 | Msa0037030:intron | 40.0% | |
| ACATGATTAAAAGGGTCACG+AGG | + | chr1_1:65941265-65941284 | Msa0037030:CDS | 40.0% | |
| TGTTGTATGTGAAGTGGCTT+TGG | - | chr1_1:65941352-65941371 | None:intergenic | 40.0% | |
| CATACAACAGATAACGTTCC+AGG | + | chr1_1:65941363-65941382 | Msa0037030:CDS | 40.0% | |
| AGTACCAATAGTAGCATCAG+GGG | - | chr1_1:65941544-65941563 | None:intergenic | 40.0% | |
| TTGTCTGATGTGTGCAGAAT+TGG | + | chr1_1:65941664-65941683 | Msa0037030:three_prime_UTR | 40.0% | |
| ! | AGGTCTAGAATCCAACAAAC+CGG | - | chr1_1:65941787-65941806 | None:intergenic | 40.0% |
| TGTTGTTGGGATCTGCATCT+TGG | - | chr1_1:65939070-65939089 | None:intergenic | 45.0% | |
| GAGTGATGACAGAAGAAGAG+AGG | - | chr1_1:65939115-65939134 | None:intergenic | 45.0% | |
| CTGTCATCACTCTCCATTCA+AGG | + | chr1_1:65939123-65939142 | Msa0037030:CDS | 45.0% | |
| CGGCTCCAATATCGGAAAAT+GGG | + | chr1_1:65939491-65939510 | Msa0037030:CDS | 45.0% | |
| GGCTCCAATATCGGAAAATG+GGG | + | chr1_1:65939492-65939511 | Msa0037030:CDS | 45.0% | |
| TCCAATATCGGAAAATGGGG+TGG | + | chr1_1:65939495-65939514 | Msa0037030:CDS | 45.0% | |
| CCAATATCGGAAAATGGGGT+GGG | + | chr1_1:65939496-65939515 | Msa0037030:CDS | 45.0% | |
| !! | AAGGAGTGTCAGTCCTTTGT+CGG | + | chr1_1:65939592-65939611 | Msa0037030:CDS | 45.0% |
| AAATACTAACGAGTGCCTCC+AGG | + | chr1_1:65939750-65939769 | Msa0037030:intron | 45.0% | |
| AATACTAACGAGTGCCTCCA+GGG | + | chr1_1:65939751-65939770 | Msa0037030:intron | 45.0% | |
| ! | TGCCTCCAGGGTATTCTTTA+AGG | + | chr1_1:65939763-65939782 | Msa0037030:intron | 45.0% |
| GTCCTTAAAGAATACCCTGG+AGG | - | chr1_1:65939768-65939787 | None:intergenic | 45.0% | |
| CATCCAAAAAGAGAAAGCCC+AGG | + | chr1_1:65939975-65939994 | Msa0037030:CDS | 45.0% | |
| AAAGGTCACAAGTCTTGCCA+TGG | + | chr1_1:65940198-65940217 | Msa0037030:CDS | 45.0% | |
| TAGGTGTCTAGTAGAGGAGT+TGG | + | chr1_1:65940437-65940456 | Msa0037030:CDS | 45.0% | |
| AGGTGTCTAGTAGAGGAGTT+GGG | + | chr1_1:65940438-65940457 | Msa0037030:CDS | 45.0% | |
| !! | GGGAGACATTGCTTTTGTCA+AGG | + | chr1_1:65940458-65940477 | Msa0037030:CDS | 45.0% |
| AGGGACCTCATAACCAATCA+TGG | + | chr1_1:65940508-65940527 | Msa0037030:CDS | 45.0% | |
| AGGTATCTTTGCCCTAAAGG+GGG | + | chr1_1:65940641-65940660 | Msa0037030:intron | 45.0% | |
| TTTCTCTGCAACCCCCTTTA+GGG | - | chr1_1:65940655-65940674 | None:intergenic | 45.0% | |
| ATTTCTCTGCAACCCCCTTT+AGG | - | chr1_1:65940656-65940675 | None:intergenic | 45.0% | |
| ! | TCATCACCAGAGCTTGGTGA+TGG | - | chr1_1:65939301-65939320 | None:intergenic | 50.0% |
| TCGTGATCATCACCAGAGCT+TGG | - | chr1_1:65939307-65939326 | None:intergenic | 50.0% | |
| TGGAACTCGTGAACTGATGG+AGG | - | chr1_1:65939337-65939356 | None:intergenic | 50.0% | |
| GGTTGGAACTCGTGAACTGA+TGG | - | chr1_1:65939340-65939359 | None:intergenic | 50.0% | |
| ! | GATGCAGAAGGTAGTGGCAA+TGG | + | chr1_1:65939391-65939410 | Msa0037030:CDS | 50.0% |
| ! | CAGAAGGTAGTGGCAATGGT+GGG | + | chr1_1:65939395-65939414 | Msa0037030:CDS | 50.0% |
| !! | GGCAATGGTGGGTCTATTTC+CGG | + | chr1_1:65939406-65939425 | Msa0037030:CDS | 50.0% |
| TGATGGAGGAGTGGCACAAT+AGG | + | chr1_1:65939455-65939474 | Msa0037030:CDS | 50.0% | |
| GCGGCTCCAATATCGGAAAA+TGG | + | chr1_1:65939490-65939509 | Msa0037030:CDS | 50.0% | |
| ! | CCCACCCCATTTTCCGATAT+TGG | - | chr1_1:65939499-65939518 | None:intergenic | 50.0% |
| ATATCGGAAAATGGGGTGGG+AGG | + | chr1_1:65939499-65939518 | Msa0037030:CDS | 50.0% | |
| AGTAAGGTGGTGCACAGTGA+GGG | + | chr1_1:65939561-65939580 | Msa0037030:CDS | 50.0% | |
| !! | TAACGGGCTACGTGTGGAAA+TGG | + | chr1_1:65939629-65939648 | Msa0037030:CDS | 50.0% |
| ACGACTTTGTGCACCATCAG+AGG | + | chr1_1:65940326-65940345 | Msa0037030:CDS | 50.0% | |
| TGTGCACCATCAGAGGTTGA+AGG | + | chr1_1:65940333-65940352 | Msa0037030:CDS | 50.0% | |
| GGCTTGTATTCTGGTCACTC+AGG | + | chr1_1:65940408-65940427 | Msa0037030:CDS | 50.0% | |
| ! | CTGGTCACTCAGGAGCTTTT+AGG | + | chr1_1:65940418-65940437 | Msa0037030:CDS | 50.0% |
| GGGGGTTGCAGAGAAATCAA+TGG | + | chr1_1:65940659-65940678 | Msa0037030:CDS | 50.0% | |
| CACCTTTGTTGCAGTACCCA+AGG | + | chr1_1:65941237-65941256 | Msa0037030:intron | 50.0% | |
| ! | GTCCTTGGGTACTGCAACAA+AGG | - | chr1_1:65941242-65941261 | None:intergenic | 50.0% |
| AAGGGTCACGAGGTTGTATC+TGG | + | chr1_1:65941275-65941294 | Msa0037030:CDS | 50.0% | |
| AGGGTCACGAGGTTGTATCT+GGG | + | chr1_1:65941276-65941295 | Msa0037030:CDS | 50.0% | |
| !! | GTGAAGTGGCTTTGGCTTCT+GGG | - | chr1_1:65941344-65941363 | None:intergenic | 50.0% |
| !! | TGTGAAGTGGCTTTGGCTTC+TGG | - | chr1_1:65941345-65941364 | None:intergenic | 50.0% |
| CTCACCCCTGATGCTACTAT+TGG | + | chr1_1:65941537-65941556 | Msa0037030:CDS | 50.0% | |
| !! | AGCTTGGTGATGGCAATGGC+TGG | - | chr1_1:65939291-65939310 | None:intergenic | 55.0% |
| !! | CCAGAGCTTGGTGATGGCAA+TGG | - | chr1_1:65939295-65939314 | None:intergenic | 55.0% |
| CCATTGCCATCACCAAGCTC+TGG | + | chr1_1:65939292-65939311 | Msa0037030:CDS | 55.0% | |
| CTTCCTCCAGTGGATGCAGA+AGG | + | chr1_1:65939379-65939398 | Msa0037030:CDS | 55.0% | |
| CTACCTTCTGCATCCACTGG+AGG | - | chr1_1:65939385-65939404 | None:intergenic | 55.0% | |
| CCACTACCTTCTGCATCCAC+TGG | - | chr1_1:65939388-65939407 | None:intergenic | 55.0% | |
| CCAGTGGATGCAGAAGGTAG+TGG | + | chr1_1:65939385-65939404 | Msa0037030:CDS | 55.0% | |
| ! | GCAGAAGGTAGTGGCAATGG+TGG | + | chr1_1:65939394-65939413 | Msa0037030:CDS | 55.0% |
| CAATAGGTCTCCCGAAGCTG+CGG | + | chr1_1:65939471-65939490 | Msa0037030:CDS | 55.0% | |
| GATATTGGAGCCGCAGCTTC+GGG | - | chr1_1:65939484-65939503 | None:intergenic | 55.0% | |
| CGATATTGGAGCCGCAGCTT+CGG | - | chr1_1:65939485-65939504 | None:intergenic | 55.0% | |
| CGAAGCTGCGGCTCCAATAT+CGG | + | chr1_1:65939483-65939502 | Msa0037030:CDS | 55.0% | |
| CCATGGCACACCCAATGATC+CGG | + | chr1_1:65939522-65939541 | Msa0037030:CDS | 55.0% | |
| TCATCCGTCGCCGGATCATT+GGG | - | chr1_1:65939535-65939554 | None:intergenic | 55.0% | |
| AATGATCCGGCGACGGATGA+CGG | + | chr1_1:65939535-65939554 | Msa0037030:CDS | 55.0% | |
| GAGTAAGGTGGTGCACAGTG+AGG | + | chr1_1:65939560-65939579 | Msa0037030:CDS | 55.0% | |
| CACAGTGAGGGACGAAGTGA+AGG | + | chr1_1:65939573-65939592 | Msa0037030:CDS | 55.0% | |
| !! | ACCAACTAACGGGCTACGTG+TGG | + | chr1_1:65939623-65939642 | Msa0037030:CDS | 55.0% |
| TCCACACGTAGCCCGTTAGT+TGG | - | chr1_1:65939627-65939646 | None:intergenic | 55.0% | |
| GGTCACAAGTCTTGCCATGG+AGG | + | chr1_1:65940201-65940220 | Msa0037030:CDS | 55.0% | |
| CTGCTGTGGAGTAACCTCCA+TGG | - | chr1_1:65940218-65940237 | None:intergenic | 55.0% | |
| GTTACTCCACAGCAGCAGGA+TGG | + | chr1_1:65940223-65940242 | Msa0037030:CDS | 55.0% | |
| GTAGTTCCATCCTGCTGCTG+TGG | - | chr1_1:65940232-65940251 | None:intergenic | 55.0% | |
| GGGTCACGAGGTTGTATCTG+GGG | + | chr1_1:65941277-65941296 | Msa0037030:CDS | 55.0% | |
| CTGGTGGCAGAAGAGGTGGT+TGG | - | chr1_1:65939357-65939376 | None:intergenic | 60.0% | |
| !! | AGTGCTGGTGGCAGAAGAGG+TGG | - | chr1_1:65939361-65939380 | None:intergenic | 60.0% |
| !! | GGAAGTGCTGGTGGCAGAAG+AGG | - | chr1_1:65939364-65939383 | None:intergenic | 60.0% |
| !! | TCCACTGGAGGAAGTGCTGG+TGG | - | chr1_1:65939373-65939392 | None:intergenic | 60.0% |
| ! | GCATCCACTGGAGGAAGTGC+TGG | - | chr1_1:65939376-65939395 | None:intergenic | 60.0% |
| TCCTCCATCACCACTGGCGA+CGG | - | chr1_1:65939445-65939464 | None:intergenic | 60.0% | |
| TGCCACTCCTCCATCACCAC+TGG | - | chr1_1:65939451-65939470 | None:intergenic | 60.0% | |
| GAAAATGGGGTGGGAGGCCA+TGG | + | chr1_1:65939505-65939524 | Msa0037030:CDS | 60.0% | |
| CCGGATCATTGGGTGTGCCA+TGG | - | chr1_1:65939525-65939544 | None:intergenic | 60.0% | |
| CACACCCAATGATCCGGCGA+CGG | + | chr1_1:65939528-65939547 | Msa0037030:CDS | 60.0% | |
| GTCATCCGTCGCCGGATCAT+TGG | - | chr1_1:65939536-65939555 | None:intergenic | 60.0% | |
| GGAGGTTACTCCACAGCAGC+AGG | + | chr1_1:65940219-65940238 | Msa0037030:CDS | 60.0% | |
| GCCACCAGCACTTCCTCCAG+TGG | + | chr1_1:65939369-65939388 | Msa0037030:CDS | 65.0% | |
| CGACGGGGGATCAGACTCAC+CGG | - | chr1_1:65939428-65939447 | None:intergenic | 65.0% | |
| TCCATCACCACTGGCGACGG+GGG | - | chr1_1:65939442-65939461 | None:intergenic | 65.0% | |
| CTCCATCACCACTGGCGACG+GGG | - | chr1_1:65939443-65939462 | None:intergenic | 65.0% | |
| CCTCCATCACCACTGGCGAC+GGG | - | chr1_1:65939444-65939463 | None:intergenic | 65.0% | |
| !! | CGCCAGTGGTGATGGAGGAG+TGG | + | chr1_1:65939446-65939465 | Msa0037030:CDS | 65.0% |
| ! | CGACGGATGACGGCGGAGTA+AGG | + | chr1_1:65939545-65939564 | Msa0037030:CDS | 65.0% |
| ! | CGGATGACGGCGGAGTAAGG+TGG | + | chr1_1:65939548-65939567 | Msa0037030:CDS | 65.0% |
| GTCTGATCCCCCGTCGCCAG+TGG | + | chr1_1:65939432-65939451 | Msa0037030:CDS | 70.0% | |
| TCCCCCGTCGCCAGTGGTGA+TGG | + | chr1_1:65939438-65939457 | Msa0037030:CDS | 70.0% | |
| !! | CCCGTCGCCAGTGGTGATGG+AGG | + | chr1_1:65939441-65939460 | Msa0037030:CDS | 70.0% |
| ! | GATCCGGCGACGGATGACGG+CGG | + | chr1_1:65939538-65939557 | Msa0037030:CDS | 70.0% |
| ACTCCGCCGTCATCCGTCGC+CGG | - | chr1_1:65939544-65939563 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 65938991 | 65941855 | 65938991 | ID=Msa0037030;Name=Msa0037030 |
| chr1_1 | mRNA | 65938991 | 65941855 | 65938991 | ID=Msa0037030-mRNA-1;Parent=Msa0037030;Name=Msa0037030-mRNA-1;_AED=0.06;_eAED=0.06;_QI=81|1|1|1|1|1|7|270|487 |
| chr1_1 | exon | 65938991 | 65939144 | 65938991 | ID=Msa0037030-mRNA-1:exon:21233;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65939284 | 65939650 | 65939284 | ID=Msa0037030-mRNA-1:exon:21234;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65939975 | 65940556 | 65939975 | ID=Msa0037030-mRNA-1:exon:21235;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65940643 | 65940699 | 65940643 | ID=Msa0037030-mRNA-1:exon:21236;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65940859 | 65941008 | 65940859 | ID=Msa0037030-mRNA-1:exon:21237;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65941251 | 65941384 | 65941251 | ID=Msa0037030-mRNA-1:exon:21238;Parent=Msa0037030-mRNA-1 |
| chr1_1 | exon | 65941485 | 65941855 | 65941485 | ID=Msa0037030-mRNA-1:exon:21239;Parent=Msa0037030-mRNA-1 |
| chr1_1 | five_prime_UTR | 65938991 | 65939071 | 65938991 | ID=Msa0037030-mRNA-1:five_prime_utr;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65939072 | 65939144 | 65939072 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65939284 | 65939650 | 65939284 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65939975 | 65940556 | 65939975 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65940643 | 65940699 | 65940643 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65940859 | 65941008 | 65940859 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65941251 | 65941384 | 65941251 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | CDS | 65941485 | 65941585 | 65941485 | ID=Msa0037030-mRNA-1:cds;Parent=Msa0037030-mRNA-1 |
| chr1_1 | three_prime_UTR | 65941586 | 65941855 | 65941586 | ID=Msa0037030-mRNA-1:three_prime_utr;Parent=Msa0037030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
