AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0607330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607330 MtrunA17_Chr4g0038891 97.765 179 4 0 1 179 1 179 2.14e-131 365
Msa0607330 MtrunA17_Chr5g0396451 84.746 177 27 0 1 177 1 177 3.35e-114 322
Msa0607330 MtrunA17_Chr1g0199951 66.871 163 53 1 18 179 27 189 2.97e-75 224
Msa0607330 MtrunA17_Chr4g0060351 46.853 143 75 1 30 171 2 144 2.85e-40 133
Msa0607330 MtrunA17_Chr8g0362321 45.517 145 78 1 30 173 2 146 4.41e-40 133
Msa0607330 MtrunA17_Chr2g0316201 45.312 128 70 0 35 162 8 135 4.21e-35 120
Msa0607330 MtrunA17_Chr2g0316211 44.882 127 70 0 36 162 9 135 2.26e-34 118
Msa0607330 MtrunA17_Chr4g0037011 44.715 123 68 0 35 157 4 126 6.32e-34 117
Msa0607330 MtrunA17_Chr3g0108261 44.355 124 69 0 35 158 4 127 1.11e-33 116
Msa0607330 MtrunA17_Chr8g0369311 42.537 134 77 0 29 162 54 187 1.15e-33 118
Msa0607330 MtrunA17_Chr5g0432831 44.355 124 69 0 35 158 4 127 1.25e-33 116
Msa0607330 MtrunA17_Chr7g0275361 43.548 124 70 0 35 158 4 127 3.32e-33 115
Msa0607330 MtrunA17_Chr1g0154011 42.969 128 73 0 35 162 4 131 8.15e-33 114
Msa0607330 MtrunA17_Chr4g0031181 36.641 131 69 2 57 173 30 160 1.56e-26 99.0
Msa0607330 MtrunA17_Chr8g0378601 38.710 124 76 0 35 158 25 148 3.23e-26 98.2
Msa0607330 MtrunA17_Chr2g0328001 36.641 131 69 2 57 173 30 160 1.21e-24 94.0
Msa0607330 MtrunA17_Chr3g0131871 37.778 135 80 3 36 168 6 138 4.49e-24 93.2
Msa0607330 MtrunA17_Chr3g0139901 38.393 112 68 1 47 157 20 131 2.79e-23 90.5
Msa0607330 MtrunA17_Chr4g0053191 36.620 142 82 3 36 169 8 149 1.62e-21 85.9
Msa0607330 MtrunA17_Chr5g0401831 35.616 146 86 3 36 173 8 153 1.98e-21 85.5
Msa0607330 MtrunA17_Chr4g0059291 36.000 125 75 4 35 157 6 127 5.62e-20 82.4
Msa0607330 MtrunA17_Chr8g0348701 34.400 125 77 4 35 157 6 127 7.73e-18 77.0
Msa0607330 MtrunA17_Chr5g0403591 37.113 97 58 1 73 169 69 162 2.31e-17 75.5
Msa0607330 MtrunA17_Chr7g0254701 30.968 155 99 2 18 171 3 150 2.34e-17 77.0
Msa0607330 MtrunA17_Chr8g0387131 34.109 129 80 4 31 157 2 127 2.66e-17 75.5
Msa0607330 MtrunA17_Chr8g0372391 35.354 99 62 2 36 133 19 116 5.55e-15 68.9
Msa0607330 MtrunA17_Chr5g0404931 33.962 106 68 2 30 134 13 117 8.03e-14 65.9
Msa0607330 MtrunA17_Chr4g0068301 29.530 149 87 5 33 174 11 148 2.43e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0607330 AT3G20060.1 81.356 177 29 1 1 173 1 177 8.09e-102 291
Msa0607330 AT1G50490.1 81.111 180 31 1 1 177 1 180 4.51e-97 279
Msa0607330 AT3G20060.2 87.500 136 17 0 42 177 1 136 1.43e-87 253
Msa0607330 AT2G02760.1 45.517 145 78 1 30 173 2 146 1.83e-39 132
Msa0607330 AT2G02760.2 45.517 145 78 1 30 173 2 146 1.83e-39 132
Msa0607330 AT2G02760.4 45.517 145 78 1 30 173 2 146 1.83e-39 132
Msa0607330 AT2G02760.3 45.517 145 78 1 30 173 2 146 1.83e-39 132
Msa0607330 AT1G14400.1 46.154 143 76 1 30 171 2 144 2.22e-39 131
Msa0607330 AT1G14400.2 46.154 143 76 1 30 171 2 144 2.22e-39 131
Msa0607330 AT5G62540.1 46.479 142 74 2 30 169 2 143 5.76e-37 125
Msa0607330 AT1G78870.2 45.312 128 70 0 35 162 8 135 6.27e-35 120
Msa0607330 AT1G16890.2 44.531 128 71 0 35 162 8 135 2.33e-34 119
Msa0607330 AT5G56150.1 45.161 124 68 0 35 158 4 127 5.65e-34 117
Msa0607330 AT1G16890.3 46.154 130 68 1 35 162 15 144 1.45e-33 117
Msa0607330 AT1G64230.2 44.355 124 69 0 35 158 4 127 2.05e-33 116
Msa0607330 AT1G64230.1 44.355 124 69 0 35 158 4 127 2.05e-33 116
Msa0607330 AT2G16740.1 41.176 136 79 1 35 169 4 139 2.42e-33 116
Msa0607330 AT4G27960.1 41.860 129 75 0 35 163 4 132 2.69e-33 116
Msa0607330 AT3G08700.2 42.029 138 78 2 35 170 4 141 7.27e-33 115
Msa0607330 AT3G08700.1 42.029 138 78 2 35 170 4 141 7.27e-33 115
Msa0607330 AT3G08690.2 43.548 124 70 0 35 158 4 127 7.54e-33 115
Msa0607330 AT3G08690.1 43.548 124 70 0 35 158 4 127 7.54e-33 115
Msa0607330 AT5G53300.2 41.085 129 76 0 35 163 4 132 1.14e-32 114
Msa0607330 AT5G53300.4 41.085 129 76 0 35 163 4 132 1.14e-32 114
Msa0607330 AT5G53300.1 41.085 129 76 0 35 163 4 132 1.14e-32 114
Msa0607330 AT5G41700.5 42.742 124 71 0 35 158 4 127 1.41e-32 114
Msa0607330 AT5G41700.2 42.742 124 71 0 35 158 4 127 1.41e-32 114
Msa0607330 AT5G41700.1 42.742 124 71 0 35 158 4 127 1.41e-32 114
Msa0607330 AT4G27960.2 41.860 129 75 0 35 163 34 162 4.35e-32 114
Msa0607330 AT5G41700.4 43.200 125 70 1 35 158 4 128 8.07e-31 109
Msa0607330 AT1G64230.3 41.353 133 69 1 35 158 4 136 2.04e-30 108
Msa0607330 AT1G64230.5 46.602 103 55 0 56 158 67 169 1.35e-29 107
Msa0607330 AT1G64230.4 46.602 103 55 0 56 158 67 169 1.35e-29 107
Msa0607330 AT1G78870.4 49.474 95 48 0 68 162 8 102 1.27e-28 103
Msa0607330 AT1G16890.1 49.474 95 48 0 68 162 8 102 1.29e-28 103
Msa0607330 AT1G78870.3 44.762 105 58 0 35 139 8 112 1.79e-27 100
Msa0607330 AT1G78870.1 48.958 96 48 1 68 162 8 103 3.44e-27 99.8
Msa0607330 AT3G13550.1 37.500 136 85 0 35 170 39 174 5.86e-27 100
Msa0607330 AT1G36340.2 40.876 137 79 2 26 162 3 137 6.57e-26 97.4
Msa0607330 AT1G36340.1 40.876 137 79 2 26 162 3 137 6.57e-26 97.4
Msa0607330 AT5G50870.1 41.935 124 67 3 34 155 4 124 1.18e-25 97.8
Msa0607330 AT5G50870.2 41.935 124 67 3 34 155 4 124 1.45e-25 97.8
Msa0607330 AT5G56150.2 43.000 100 57 0 35 134 4 103 1.90e-25 94.7
Msa0607330 AT5G41700.3 40.385 104 62 0 35 138 4 107 2.63e-24 93.2
Msa0607330 AT3G13550.2 39.640 111 67 0 35 145 39 149 3.77e-24 93.2
Msa0607330 AT3G55380.1 35.115 131 71 2 57 173 31 161 1.00e-23 92.0
Msa0607330 AT5G53300.3 40.404 99 59 0 35 133 4 102 1.09e-23 90.5
Msa0607330 AT5G59300.1 35.115 131 71 2 57 173 30 160 1.21e-23 92.0
Msa0607330 AT3G46460.1 35.878 131 70 2 57 173 30 160 2.02e-23 91.3
Msa0607330 AT5G25760.1 38.739 111 67 1 48 157 21 131 3.10e-23 90.5
Msa0607330 AT5G25760.2 38.739 111 67 1 48 157 21 131 3.10e-23 90.5
Msa0607330 AT1G63800.1 38.400 125 72 4 35 157 6 127 2.49e-21 86.3
Msa0607330 AT5G41340.1 37.600 125 73 4 35 157 6 127 9.22e-21 85.1
Msa0607330 AT3G57870.1 36.620 142 82 3 36 169 9 150 1.63e-20 83.6
Msa0607330 AT1G63800.2 41.304 92 52 2 68 157 21 112 3.42e-19 80.5
Msa0607330 AT2G46030.5 36.000 125 75 4 35 157 6 127 4.89e-19 80.5
Msa0607330 AT2G46030.1 36.000 125 75 4 35 157 6 127 4.89e-19 80.5
Msa0607330 AT2G18600.1 34.146 123 78 3 36 157 35 155 1.85e-18 79.0
Msa0607330 AT2G18600.2 34.146 123 78 3 36 157 35 155 1.85e-18 79.0
Msa0607330 AT2G46030.3 36.000 125 75 4 35 157 78 199 3.91e-18 79.3
Msa0607330 AT5G05080.2 33.099 142 93 2 32 172 10 150 7.60e-18 78.6
Msa0607330 AT5G05080.3 33.099 142 93 2 32 172 10 150 7.60e-18 78.6
Msa0607330 AT5G05080.1 33.099 142 93 2 32 172 10 150 7.60e-18 78.6
Msa0607330 AT5G05080.4 33.099 142 93 2 32 172 10 150 7.60e-18 78.6
Msa0607330 AT4G36800.2 30.328 122 84 1 36 157 34 154 1.61e-16 73.9
Msa0607330 AT4G36800.1 30.328 122 84 1 36 157 34 154 1.61e-16 73.9
Msa0607330 AT3G55380.2 27.907 172 75 4 51 173 24 195 2.39e-16 73.6
Msa0607330 AT2G46030.4 36.634 101 62 2 59 157 30 130 3.14e-16 73.2
Msa0607330 AT2G46030.2 36.634 101 62 2 59 157 30 130 3.14e-16 73.2
Msa0607330 AT5G41340.2 41.176 85 48 2 75 157 8 92 3.31e-16 72.0
Msa0607330 AT3G46460.3 33.333 111 60 2 77 173 8 118 6.28e-16 70.9
Msa0607330 AT3G46460.2 33.333 111 60 2 77 173 8 118 6.28e-16 70.9
Msa0607330 AT3G24515.1 37.391 115 63 4 68 173 51 165 1.19e-15 73.9
Msa0607330 AT3G24515.3 37.391 115 63 4 68 173 76 190 1.56e-15 73.9
Msa0607330 AT1G75440.1 35.135 111 70 2 24 133 7 116 1.07e-14 68.6
Msa0607330 AT1G45050.1 33.036 112 73 2 24 134 7 117 1.97e-14 67.8
Msa0607330 AT2G32790.1 38.017 121 72 2 53 173 51 168 4.98e-14 67.0
Msa0607330 AT5G42990.1 33.036 112 73 2 24 134 7 117 8.45e-14 66.2
Msa0607330 AT4G36410.1 34.343 99 63 2 36 133 19 116 1.22e-13 65.5
Msa0607330 AT3G17000.1 32.743 113 67 3 34 141 13 121 7.26e-12 62.8

Find 58 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAAATGATTTGTTAAA+AGG 0.148752 4_2:-54133900 None:intergenic
ATGGATCACCTAAAACTAAA+TGG 0.199370 4_2:-54133837 None:intergenic
TTGACTTTAGGGGACTTAAA+AGG 0.221429 4_2:-54133142 None:intergenic
TTGTTTGTTTATAGGATAAA+TGG 0.261888 4_2:+54133314 Msa0607330:intron
CATCCCAATGTTGATCTTCA+TGG 0.269716 4_2:+54133184 Msa0607330:CDS
GCCTTCAAACACTGTATCTT+TGG 0.285480 4_2:-54133080 None:intergenic
AAGAAGAAGAAATGAAAATA+TGG 0.309316 4_2:-54131699 None:intergenic
GTAGTTTCAAACTTGACTTT+AGG 0.334750 4_2:-54133154 None:intergenic
CTGTCCATCCAAAGTCTTCT+TGG 0.336173 4_2:+54133367 Msa0607330:CDS
TGTCAGATGAGCGGTGATTC+TGG 0.340319 4_2:+54132998 Msa0607330:intron
TAGTTTCAAACTTGACTTTA+GGG 0.355376 4_2:-54133153 None:intergenic
GAATGTGTTATACAGATTAC+AGG 0.358784 4_2:+54133714 Msa0607330:intron
AGTGCTACTGCTTAGACCTT+TGG 0.391404 4_2:+54133767 Msa0607330:exon
TTGTGGAAAGGAACAATAAC+AGG 0.394846 4_2:+54133055 Msa0607330:CDS
ATCCACAAGCAGCACAGCTT+TGG 0.411990 4_2:+54133603 Msa0607330:CDS
TATATGCTTGGACATACTTC+AGG 0.420859 4_2:+54133210 Msa0607330:CDS
GACTTAAAAGGGTAATCATT+AGG 0.421604 4_2:-54133130 None:intergenic
AGCATCGGTGTTCCCATTGA+TGG 0.425940 4_2:-54131768 None:intergenic
GTCTGAATTGATGTCTTTGA+TGG 0.426742 4_2:+54132754 Msa0607330:CDS
TGACTTTAGGGGACTTAAAA+GGG 0.431721 4_2:-54133141 None:intergenic
CTCCAAAGCTGTGCTGCTTG+TGG 0.432715 4_2:-54133605 None:intergenic
CTGCTTAGACCTTTGGAGAA+AGG 0.437512 4_2:+54133774 Msa0607330:exon
ATTCCACCTCTGTTCTCAAA+AGG 0.440278 4_2:+54131846 Msa0607330:CDS
TGTGCTGCTTGTGGATTTAG+TGG 0.440911 4_2:-54133596 None:intergenic
TTTAGTGGTGAACTAATGTT+TGG 0.452232 4_2:-54133581 None:intergenic
GGTGAATTGTGAAGAGGGTT+TGG 0.460402 4_2:-54131660 None:intergenic
GTCTACCTCCAAGAAGACTT+TGG 0.472732 4_2:-54133375 None:intergenic
AAGAATATGTTGTCTTCCTC+AGG 0.473205 4_2:-54133034 None:intergenic
TGGATCACCTAAAACTAAAT+GGG 0.480653 4_2:-54133836 None:intergenic
ATCAACATTGGGATGGAAGC+AGG 0.492019 4_2:-54133176 None:intergenic
TTATGCTCTACTGATGTGGT+CGG 0.496572 4_2:+54133868 Msa0607330:three_prime_UTR
GAAAATCAAATGAATCGAAT+CGG 0.506136 4_2:-54131738 None:intergenic
TTGCCATGAAGATCAACATT+GGG 0.507321 4_2:-54133187 None:intergenic
TCTTCATGGCAATATATGCT+TGG 0.513262 4_2:+54133198 Msa0607330:CDS
AACAATGGGTTGAGCAGCAT+CGG 0.515118 4_2:-54131783 None:intergenic
GAGGTGGAATCAACGGACTT+AGG 0.525977 4_2:-54131833 None:intergenic
AAGATGGTGAATTGTGAAGA+GGG 0.533917 4_2:-54131665 None:intergenic
ACCTCCAAGAAGACTTTGGA+TGG 0.537043 4_2:-54133371 None:intergenic
AGAAAAGAGCCTTTCTCCAA+AGG 0.541425 4_2:-54133783 None:intergenic
TCCATCCAAAGTCTTCTTGG+AGG 0.548893 4_2:+54133370 Msa0607330:CDS
AAGGTCTAAGCAGTAGCACT+TGG 0.554785 4_2:-54133764 None:intergenic
ACCAAAGATACAGTGTTTGA+AGG 0.558474 4_2:+54133079 Msa0607330:CDS
GAAGATGGTGAATTGTGAAG+AGG 0.560392 4_2:-54131666 None:intergenic
GACAACATATTCTTGTGGAA+AGG 0.561762 4_2:+54133043 Msa0607330:CDS
ACGGACTTAGGAGGAGGAAG+AGG 0.570689 4_2:-54131821 None:intergenic
GAGAACAGAGGTGGAATCAA+CGG 0.579252 4_2:-54131840 None:intergenic
TTATACAGATTACAGGAAGA+TGG 0.582106 4_2:+54133721 Msa0607330:intron
ATTGCCATGAAGATCAACAT+TGG 0.588583 4_2:-54133188 None:intergenic
TATGGAAGTGAAGAAGAAGA+TGG 0.594221 4_2:-54131681 None:intergenic
GAATCAACGGACTTAGGAGG+AGG 0.597125 4_2:-54131827 None:intergenic
AGGAAGACAACATATTCTTG+TGG 0.600574 4_2:+54133038 Msa0607330:CDS
GTTGATTTAAAATGAAACGA+TGG 0.610150 4_2:-54131638 None:intergenic
GTGGAATCAACGGACTTAGG+AGG 0.610762 4_2:-54131830 None:intergenic
CAGCTTTGGAGCAATCAAGA+AGG 0.619795 4_2:+54133617 Msa0607330:CDS
AGTTTCAAACTTGACTTTAG+GGG 0.633585 4_2:-54133152 None:intergenic
CATGAAGATCAACATTGGGA+TGG 0.643434 4_2:-54133183 None:intergenic
TACAGATTACAGGAAGATGG+TGG 0.659983 4_2:+54133724 Msa0607330:intron
TGATTGGACTGTCAGATGAG+CGG 0.704407 4_2:+54132989 Msa0607330:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAATGTATAAATAA+AGG + chr4_2:54132292-54132311 Msa0607330:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_2:54132293-54132312 Msa0607330:intron 10.0%
!! TAAAAAGTTAAAAAAGAATT+AGG - chr4_2:54133550-54133569 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr4_2:54132292-54132311 Msa0607330:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr4_2:54132293-54132312 Msa0607330:intron 10.0%
!! TAAAAAGTTAAAAAAGAATT+AGG - chr4_2:54133550-54133569 None:intergenic 10.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_2:54131883-54131902 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_2:54132294-54132313 Msa0607330:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_2:54132356-54132375 Msa0607330:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_2:54132357-54132376 Msa0607330:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_2:54132647-54132666 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_2:54132648-54132667 None:intergenic 15.0%
!! TTATTTGTTTGTTTGTTTAT+AGG + chr4_2:54133306-54133325 Msa0607330:intron 15.0%
!!! TATATGTGTAAAACTATTTT+AGG + chr4_2:54133480-54133499 Msa0607330:intron 15.0%
!! AAAAATCATTAGAACTATTA+TGG - chr4_2:54133693-54133712 None:intergenic 15.0%
!!! ATAATAGTTCTAATGATTTT+TGG + chr4_2:54133692-54133711 Msa0607330:intron 15.0%
!!! ACATAAAATGATTTGTTAAA+AGG - chr4_2:54133903-54133922 None:intergenic 15.0%
!! TAAAAGAGAGATTTAATAAT+AGG - chr4_2:54131883-54131902 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr4_2:54132294-54132313 Msa0607330:intron 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr4_2:54132356-54132375 Msa0607330:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr4_2:54132357-54132376 Msa0607330:intron 15.0%
!! ACAAATGACAATAATAATAA+GGG - chr4_2:54132647-54132666 None:intergenic 15.0%
!! TACAAATGACAATAATAATA+AGG - chr4_2:54132648-54132667 None:intergenic 15.0%
!! TTATTTGTTTGTTTGTTTAT+AGG + chr4_2:54133306-54133325 Msa0607330:intron 15.0%
!!! TATATGTGTAAAACTATTTT+AGG + chr4_2:54133480-54133499 Msa0607330:intron 15.0%
!! AAAAATCATTAGAACTATTA+TGG - chr4_2:54133693-54133712 None:intergenic 15.0%
!!! ATAATAGTTCTAATGATTTT+TGG + chr4_2:54133692-54133711 Msa0607330:intron 15.0%
!!! ACATAAAATGATTTGTTAAA+AGG - chr4_2:54133903-54133922 None:intergenic 15.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_2:54131702-54131721 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_2:54132426-54132445 Msa0607330:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_2:54133314-54133333 Msa0607330:intron 20.0%
!! ACACTAATCTAAATTGTATA+CGG - chr4_2:54133512-54133531 None:intergenic 20.0%
!! GTAGAGCATAAAAAAATAAA+TGG - chr4_2:54133859-54133878 None:intergenic 20.0%
!! AAGAAGAAGAAATGAAAATA+TGG - chr4_2:54131702-54131721 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr4_2:54132426-54132445 Msa0607330:intron 20.0%
!! TTGTTTGTTTATAGGATAAA+TGG + chr4_2:54133314-54133333 Msa0607330:intron 20.0%
!! ACACTAATCTAAATTGTATA+CGG - chr4_2:54133512-54133531 None:intergenic 20.0%
!! GTAGAGCATAAAAAAATAAA+TGG - chr4_2:54133859-54133878 None:intergenic 20.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_2:54131741-54131760 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_2:54131742-54131761 Msa0607330:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_2:54132180-54132199 Msa0607330:intron 25.0%
! GAAAGTGGAATATATTATAC+TGG + chr4_2:54132316-54132335 Msa0607330:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4_2:54132403-54132422 Msa0607330:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4_2:54132404-54132423 Msa0607330:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_2:54132425-54132444 Msa0607330:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_2:54132973-54132992 Msa0607330:intron 25.0%
! TAGTTTCAAACTTGACTTTA+GGG - chr4_2:54133156-54133175 None:intergenic 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_2:54133829-54133848 Msa0607330:three_prime_UTR 25.0%
! GAAAATCAAATGAATCGAAT+CGG - chr4_2:54131741-54131760 None:intergenic 25.0%
!!! TTCGATTCATTTGATTTTCA+TGG + chr4_2:54131742-54131761 Msa0607330:exon 25.0%
! GAACAAATGATTGTGATAAA+TGG + chr4_2:54132180-54132199 Msa0607330:intron 25.0%
! GAAAGTGGAATATATTATAC+TGG + chr4_2:54132316-54132335 Msa0607330:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr4_2:54132403-54132422 Msa0607330:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr4_2:54132404-54132423 Msa0607330:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr4_2:54132425-54132444 Msa0607330:intron 25.0%
!!! TGTTTTGCATTTTTTGTGAT+TGG + chr4_2:54132973-54132992 Msa0607330:intron 25.0%
! TAGTTTCAAACTTGACTTTA+GGG - chr4_2:54133156-54133175 None:intergenic 25.0%
!!! ATGAAAACCCATTTAGTTTT+AGG + chr4_2:54133829-54133848 Msa0607330:three_prime_UTR 25.0%
ATGTTAATGTATGATGTCGT+CGG - chr4_2:54132010-54132029 None:intergenic 30.0%
TCATACATTAACATGATCAG+TGG + chr4_2:54132016-54132035 Msa0607330:intron 30.0%
CATACATTAACATGATCAGT+GGG + chr4_2:54132017-54132036 Msa0607330:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_2:54132301-54132320 Msa0607330:intron 30.0%
TGAAAAAACTAAGCTACACA+AGG - chr4_2:54132572-54132591 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_2:54132609-54132628 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_2:54132817-54132836 Msa0607330:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_2:54132868-54132887 None:intergenic 30.0%
! ACAATGTGCGAATTTAACTT+TGG - chr4_2:54132898-54132917 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_2:54132926-54132945 Msa0607330:intron 30.0%
GACTTAAAAGGGTAATCATT+AGG - chr4_2:54133133-54133152 None:intergenic 30.0%
AGTTTCAAACTTGACTTTAG+GGG - chr4_2:54133155-54133174 None:intergenic 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_2:54133157-54133176 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_2:54133230-54133249 Msa0607330:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_2:54133268-54133287 Msa0607330:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_2:54133584-54133603 None:intergenic 30.0%
! AATCATTATGAGTCTTGTGA+TGG + chr4_2:54133652-54133671 Msa0607330:intron 30.0%
GAATGTGTTATACAGATTAC+AGG + chr4_2:54133714-54133733 Msa0607330:intron 30.0%
TTATACAGATTACAGGAAGA+TGG + chr4_2:54133721-54133740 Msa0607330:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_2:54133839-54133858 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_2:54133840-54133859 None:intergenic 30.0%
!!! TTTTTTATGCTCTACTGATG+TGG + chr4_2:54133864-54133883 Msa0607330:three_prime_UTR 30.0%
ATGTTAATGTATGATGTCGT+CGG - chr4_2:54132010-54132029 None:intergenic 30.0%
TCATACATTAACATGATCAG+TGG + chr4_2:54132016-54132035 Msa0607330:intron 30.0%
CATACATTAACATGATCAGT+GGG + chr4_2:54132017-54132036 Msa0607330:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr4_2:54132301-54132320 Msa0607330:intron 30.0%
TGAAAAAACTAAGCTACACA+AGG - chr4_2:54132572-54132591 None:intergenic 30.0%
!! TAGGAGTACTAGTTAAGAAA+TGG - chr4_2:54132609-54132628 None:intergenic 30.0%
!!! CACGTTCATTATTGTTTTTG+AGG + chr4_2:54132817-54132836 Msa0607330:intron 30.0%
TCTGAACCTCAACAAAATTA+AGG - chr4_2:54132868-54132887 None:intergenic 30.0%
! ACAATGTGCGAATTTAACTT+TGG - chr4_2:54132898-54132917 None:intergenic 30.0%
CATGTATTTAGCTAATAGTG+TGG + chr4_2:54132926-54132945 Msa0607330:intron 30.0%
GACTTAAAAGGGTAATCATT+AGG - chr4_2:54133133-54133152 None:intergenic 30.0%
AGTTTCAAACTTGACTTTAG+GGG - chr4_2:54133155-54133174 None:intergenic 30.0%
GTAGTTTCAAACTTGACTTT+AGG - chr4_2:54133157-54133176 None:intergenic 30.0%
AGGTAATGTGAAATCATCTA+AGG + chr4_2:54133230-54133249 Msa0607330:intron 30.0%
!!! ATTTGTTGTTGACCTTGTTT+TGG + chr4_2:54133268-54133287 Msa0607330:intron 30.0%
TTTAGTGGTGAACTAATGTT+TGG - chr4_2:54133584-54133603 None:intergenic 30.0%
! AATCATTATGAGTCTTGTGA+TGG + chr4_2:54133652-54133671 Msa0607330:intron 30.0%
GAATGTGTTATACAGATTAC+AGG + chr4_2:54133714-54133733 Msa0607330:intron 30.0%
TTATACAGATTACAGGAAGA+TGG + chr4_2:54133721-54133740 Msa0607330:intron 30.0%
TGGATCACCTAAAACTAAAT+GGG - chr4_2:54133839-54133858 None:intergenic 30.0%
ATGGATCACCTAAAACTAAA+TGG - chr4_2:54133840-54133859 None:intergenic 30.0%
!!! TTTTTTATGCTCTACTGATG+TGG + chr4_2:54133864-54133883 Msa0607330:three_prime_UTR 30.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_2:54131668-54131687 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_2:54131684-54131703 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_2:54131755-54131774 Msa0607330:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_2:54131756-54131775 Msa0607330:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_2:54131800-54131819 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_2:54131801-54131820 None:intergenic 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_2:54132050-54132069 Msa0607330:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_2:54132165-54132184 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_2:54132272-54132291 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_2:54132439-54132458 Msa0607330:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_2:54132504-54132523 Msa0607330:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_2:54132505-54132524 Msa0607330:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_2:54132534-54132553 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_2:54132699-54132718 Msa0607330:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_2:54132726-54132745 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_2:54132754-54132773 Msa0607330:CDS 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_2:54133037-54133056 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_2:54133038-54133057 Msa0607330:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_2:54133043-54133062 Msa0607330:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_2:54133055-54133074 Msa0607330:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_2:54133079-54133098 Msa0607330:CDS 35.0%
! TGACTTTAGGGGACTTAAAA+GGG - chr4_2:54133144-54133163 None:intergenic 35.0%
! TTGACTTTAGGGGACTTAAA+AGG - chr4_2:54133145-54133164 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_2:54133190-54133209 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_2:54133191-54133210 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_2:54133198-54133217 Msa0607330:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_2:54133210-54133229 Msa0607330:CDS 35.0%
ACAAGACTCATAATGATTGC+AGG - chr4_2:54133650-54133669 None:intergenic 35.0%
AAGATGGTGAATTGTGAAGA+GGG - chr4_2:54131668-54131687 None:intergenic 35.0%
TATGGAAGTGAAGAAGAAGA+TGG - chr4_2:54131684-54131703 None:intergenic 35.0%
! ATTTTCATGGCTACCATCAA+TGG + chr4_2:54131755-54131774 Msa0607330:exon 35.0%
! TTTTCATGGCTACCATCAAT+GGG + chr4_2:54131756-54131775 Msa0607330:exon 35.0%
!! TGTTTTGTTGGAGCAACAAT+GGG - chr4_2:54131800-54131819 None:intergenic 35.0%
!! TTGTTTTGTTGGAGCAACAA+TGG - chr4_2:54131801-54131820 None:intergenic 35.0%
CTTGTATGCATTCTTAGATG+AGG + chr4_2:54132050-54132069 Msa0607330:intron 35.0%
!! TGTTCGCTTTTATGTCACTT+TGG - chr4_2:54132165-54132184 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - chr4_2:54132272-54132291 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + chr4_2:54132439-54132458 Msa0607330:intron 35.0%
ACTACAAGTGTCTAAGTAAG+TGG + chr4_2:54132504-54132523 Msa0607330:intron 35.0%
CTACAAGTGTCTAAGTAAGT+GGG + chr4_2:54132505-54132524 Msa0607330:intron 35.0%
ATGTAGCCGTAACACATAAA+TGG - chr4_2:54132534-54132553 None:intergenic 35.0%
!!! ACACGTTCTTTGTTTTGTGT+TGG + chr4_2:54132699-54132718 Msa0607330:intron 35.0%
GCTCAACACACAAATCAAAT+TGG - chr4_2:54132726-54132745 None:intergenic 35.0%
GTCTGAATTGATGTCTTTGA+TGG + chr4_2:54132754-54132773 Msa0607330:CDS 35.0%
AAGAATATGTTGTCTTCCTC+AGG - chr4_2:54133037-54133056 None:intergenic 35.0%
AGGAAGACAACATATTCTTG+TGG + chr4_2:54133038-54133057 Msa0607330:CDS 35.0%
GACAACATATTCTTGTGGAA+AGG + chr4_2:54133043-54133062 Msa0607330:CDS 35.0%
TTGTGGAAAGGAACAATAAC+AGG + chr4_2:54133055-54133074 Msa0607330:CDS 35.0%
ACCAAAGATACAGTGTTTGA+AGG + chr4_2:54133079-54133098 Msa0607330:CDS 35.0%
! TGACTTTAGGGGACTTAAAA+GGG - chr4_2:54133144-54133163 None:intergenic 35.0%
! TTGACTTTAGGGGACTTAAA+AGG - chr4_2:54133145-54133164 None:intergenic 35.0%
TTGCCATGAAGATCAACATT+GGG - chr4_2:54133190-54133209 None:intergenic 35.0%
ATTGCCATGAAGATCAACAT+TGG - chr4_2:54133191-54133210 None:intergenic 35.0%
TCTTCATGGCAATATATGCT+TGG + chr4_2:54133198-54133217 Msa0607330:CDS 35.0%
TATATGCTTGGACATACTTC+AGG + chr4_2:54133210-54133229 Msa0607330:CDS 35.0%
ACAAGACTCATAATGATTGC+AGG - chr4_2:54133650-54133669 None:intergenic 35.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_2:54131669-54131688 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_2:54131846-54131865 Msa0607330:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_2:54131852-54131871 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_2:54131855-54131874 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_2:54132073-54132092 Msa0607330:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_2:54132123-54132142 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_2:54132123-54132142 Msa0607330:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_2:54132257-54132276 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_2:54132258-54132277 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_2:54132440-54132459 Msa0607330:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_2:54132525-54132544 Msa0607330:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_2:54132628-54132647 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_2:54132859-54132878 Msa0607330:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_2:54133018-54133037 Msa0607330:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_2:54133083-54133102 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_2:54133186-54133205 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_2:54133184-54133203 Msa0607330:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_2:54133273-54133292 Msa0607330:intron 40.0%
TACAGATTACAGGAAGATGG+TGG + chr4_2:54133724-54133743 Msa0607330:intron 40.0%
AGAAAAGAGCCTTTCTCCAA+AGG - chr4_2:54133786-54133805 None:intergenic 40.0%
TTATGCTCTACTGATGTGGT+CGG + chr4_2:54133868-54133887 Msa0607330:three_prime_UTR 40.0%
GAAGATGGTGAATTGTGAAG+AGG - chr4_2:54131669-54131688 None:intergenic 40.0%
ATTCCACCTCTGTTCTCAAA+AGG + chr4_2:54131846-54131865 Msa0607330:CDS 40.0%
!! AAACCTTTTGAGAACAGAGG+TGG - chr4_2:54131852-54131871 None:intergenic 40.0%
!! GAGAAACCTTTTGAGAACAG+AGG - chr4_2:54131855-54131874 None:intergenic 40.0%
ACTTGTGTGATCCACATCAA+TGG + chr4_2:54132073-54132092 Msa0607330:intron 40.0%
ACATGAACGGTATAAGGTGT+CGG - chr4_2:54132123-54132142 None:intergenic 40.0%
ACACCTTATACCGTTCATGT+GGG + chr4_2:54132123-54132142 Msa0607330:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr4_2:54132257-54132276 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - chr4_2:54132258-54132277 None:intergenic 40.0%
GAAAATGGGTCAGATATTCC+GGG + chr4_2:54132440-54132459 Msa0607330:intron 40.0%
GGGCATCCATTTATGTGTTA+CGG + chr4_2:54132525-54132544 Msa0607330:intron 40.0%
!! AGGGTTTGCTAACTAGTGTT+AGG - chr4_2:54132628-54132647 None:intergenic 40.0%
! GTGACGCCTTAATTTTGTTG+AGG + chr4_2:54132859-54132878 Msa0607330:intron 40.0%
!! TGGTATATCTGCTTTTCCTG+AGG + chr4_2:54133018-54133037 Msa0607330:CDS 40.0%
GCCTTCAAACACTGTATCTT+TGG - chr4_2:54133083-54133102 None:intergenic 40.0%
CATGAAGATCAACATTGGGA+TGG - chr4_2:54133186-54133205 None:intergenic 40.0%
CATCCCAATGTTGATCTTCA+TGG + chr4_2:54133184-54133203 Msa0607330:CDS 40.0%
!!! TTGTTGACCTTGTTTTGGCT+TGG + chr4_2:54133273-54133292 Msa0607330:intron 40.0%
TACAGATTACAGGAAGATGG+TGG + chr4_2:54133724-54133743 Msa0607330:intron 40.0%
AGAAAAGAGCCTTTCTCCAA+AGG - chr4_2:54133786-54133805 None:intergenic 40.0%
TTATGCTCTACTGATGTGGT+CGG + chr4_2:54133868-54133887 Msa0607330:three_prime_UTR 40.0%
GGTGAATTGTGAAGAGGGTT+TGG - chr4_2:54131663-54131682 None:intergenic 45.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_2:54131786-54131805 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_2:54131812-54131831 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_2:54131843-54131862 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_2:54132027-54132046 Msa0607330:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_2:54132080-54132099 Msa0607330:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_2:54132122-54132141 Msa0607330:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_2:54132129-54132148 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_2:54132131-54132150 Msa0607330:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_2:54132255-54132274 Msa0607330:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_2:54132461-54132480 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_2:54132989-54133008 Msa0607330:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_2:54133179-54133198 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_2:54133283-54133302 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_2:54133367-54133386 Msa0607330:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_2:54133370-54133389 Msa0607330:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_2:54133374-54133393 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_2:54133378-54133397 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_2:54133599-54133618 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_2:54133617-54133636 Msa0607330:CDS 45.0%
AAGGTCTAAGCAGTAGCACT+TGG - chr4_2:54133767-54133786 None:intergenic 45.0%
! AGTGCTACTGCTTAGACCTT+TGG + chr4_2:54133767-54133786 Msa0607330:exon 45.0%
! CTGCTTAGACCTTTGGAGAA+AGG + chr4_2:54133774-54133793 Msa0607330:exon 45.0%
GGTGAATTGTGAAGAGGGTT+TGG - chr4_2:54131663-54131682 None:intergenic 45.0%
!! AACAATGGGTTGAGCAGCAT+CGG - chr4_2:54131786-54131805 None:intergenic 45.0%
!! GGAGGAAGAGGTTGTTTTGT+TGG - chr4_2:54131812-54131831 None:intergenic 45.0%
GAGAACAGAGGTGGAATCAA+CGG - chr4_2:54131843-54131862 None:intergenic 45.0%
CATGATCAGTGGGTCTTTGT+TGG + chr4_2:54132027-54132046 Msa0607330:intron 45.0%
TGATCCACATCAATGGCACA+CGG + chr4_2:54132080-54132099 Msa0607330:intron 45.0%
GACACCTTATACCGTTCATG+TGG + chr4_2:54132122-54132141 Msa0607330:intron 45.0%
TGACCCACATGAACGGTATA+AGG - chr4_2:54132129-54132148 None:intergenic 45.0%
TACCGTTCATGTGGGTCATT+CGG + chr4_2:54132131-54132150 Msa0607330:intron 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + chr4_2:54132255-54132274 Msa0607330:intron 45.0%
ATTAAATACTCCCTCCGTCC+CGG - chr4_2:54132461-54132480 None:intergenic 45.0%
TGATTGGACTGTCAGATGAG+CGG + chr4_2:54132989-54133008 Msa0607330:intron 45.0%
ATCAACATTGGGATGGAAGC+AGG - chr4_2:54133179-54133198 None:intergenic 45.0%
CAGTATGCCAAGCCAAAACA+AGG - chr4_2:54133283-54133302 None:intergenic 45.0%
CTGTCCATCCAAAGTCTTCT+TGG + chr4_2:54133367-54133386 Msa0607330:CDS 45.0%
TCCATCCAAAGTCTTCTTGG+AGG + chr4_2:54133370-54133389 Msa0607330:CDS 45.0%
ACCTCCAAGAAGACTTTGGA+TGG - chr4_2:54133374-54133393 None:intergenic 45.0%
GTCTACCTCCAAGAAGACTT+TGG - chr4_2:54133378-54133397 None:intergenic 45.0%
!! TGTGCTGCTTGTGGATTTAG+TGG - chr4_2:54133599-54133618 None:intergenic 45.0%
!! CAGCTTTGGAGCAATCAAGA+AGG + chr4_2:54133617-54133636 Msa0607330:CDS 45.0%
AAGGTCTAAGCAGTAGCACT+TGG - chr4_2:54133767-54133786 None:intergenic 45.0%
! AGTGCTACTGCTTAGACCTT+TGG + chr4_2:54133767-54133786 Msa0607330:exon 45.0%
! CTGCTTAGACCTTTGGAGAA+AGG + chr4_2:54133774-54133793 Msa0607330:exon 45.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_2:54131771-54131790 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_2:54131830-54131849 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_2:54131833-54131852 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_2:54131836-54131855 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_2:54132132-54132151 Msa0607330:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_2:54132136-54132155 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_2:54132249-54132268 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_2:54132253-54132272 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_2:54132444-54132463 Msa0607330:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_2:54132998-54133017 Msa0607330:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_2:54133603-54133622 Msa0607330:CDS 50.0%
!! AGCATCGGTGTTCCCATTGA+TGG - chr4_2:54131771-54131790 None:intergenic 50.0%
! GAATCAACGGACTTAGGAGG+AGG - chr4_2:54131830-54131849 None:intergenic 50.0%
! GTGGAATCAACGGACTTAGG+AGG - chr4_2:54131833-54131852 None:intergenic 50.0%
! GAGGTGGAATCAACGGACTT+AGG - chr4_2:54131836-54131855 None:intergenic 50.0%
ACCGTTCATGTGGGTCATTC+GGG + chr4_2:54132132-54132151 Msa0607330:intron 50.0%
ACCCGAATGACCCACATGAA+CGG - chr4_2:54132136-54132155 None:intergenic 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr4_2:54132249-54132268 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr4_2:54132253-54132272 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + chr4_2:54132444-54132463 Msa0607330:intron 50.0%
TGTCAGATGAGCGGTGATTC+TGG + chr4_2:54132998-54133017 Msa0607330:intron 50.0%
ATCCACAAGCAGCACAGCTT+TGG + chr4_2:54133603-54133622 Msa0607330:CDS 50.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_2:54131824-54131843 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_2:54132087-54132106 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_2:54132250-54132269 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_2:54132448-54132467 Msa0607330:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_2:54133608-54133627 None:intergenic 55.0%
ACGGACTTAGGAGGAGGAAG+AGG - chr4_2:54131824-54131843 None:intergenic 55.0%
! GACACCGTGTGCCATTGATG+TGG - chr4_2:54132087-54132106 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr4_2:54132250-54132269 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + chr4_2:54132448-54132467 Msa0607330:intron 55.0%
!! CTCCAAAGCTGTGCTGCTTG+TGG - chr4_2:54133608-54133627 None:intergenic 55.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_2:54132109-54132128 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_2:54132110-54132129 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_2:54132447-54132466 Msa0607330:intron 60.0%
!! AGGTGTCGGTGCACTCTGCA+GGG - chr4_2:54132109-54132128 None:intergenic 60.0%
!! AAGGTGTCGGTGCACTCTGC+AGG - chr4_2:54132110-54132129 None:intergenic 60.0%
GGTCAGATATTCCGGGACGG+AGG + chr4_2:54132447-54132466 Msa0607330:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 54131640 54133973 54131640 ID=Msa0607330;Name=Msa0607330
chr4_2 mRNA 54131640 54133973 54131640 ID=Msa0607330-mRNA-1;Parent=Msa0607330;Name=Msa0607330-mRNA-1;_AED=0.23;_eAED=0.23;_QI=121|1|1|1|1|1|6|192|179
chr4_2 exon 54131640 54131867 54131640 ID=Msa0607330-mRNA-1:exon:13519;Parent=Msa0607330-mRNA-1
chr4_2 exon 54132748 54132775 54132748 ID=Msa0607330-mRNA-1:exon:13520;Parent=Msa0607330-mRNA-1
chr4_2 exon 54133004 54133231 54133004 ID=Msa0607330-mRNA-1:exon:13521;Parent=Msa0607330-mRNA-1
chr4_2 exon 54133328 54133391 54133328 ID=Msa0607330-mRNA-1:exon:13522;Parent=Msa0607330-mRNA-1
chr4_2 exon 54133579 54133638 54133579 ID=Msa0607330-mRNA-1:exon:13523;Parent=Msa0607330-mRNA-1
chr4_2 exon 54133729 54133973 54133729 ID=Msa0607330-mRNA-1:exon:13524;Parent=Msa0607330-mRNA-1
chr4_2 five_prime_UTR 54131640 54131760 54131640 ID=Msa0607330-mRNA-1:five_prime_utr;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54131761 54131867 54131761 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54132748 54132775 54132748 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54133004 54133231 54133004 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54133328 54133391 54133328 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54133579 54133638 54133579 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 CDS 54133729 54133781 54133729 ID=Msa0607330-mRNA-1:cds;Parent=Msa0607330-mRNA-1
chr4_2 three_prime_UTR 54133782 54133973 54133782 ID=Msa0607330-mRNA-1:three_prime_utr;Parent=Msa0607330-mRNA-1
Gene Sequence

>Msa0607330

ATGGCTACCATCAATGGGAACACCGATGCTGCTCAACCCATTGTTGCTCCAACAAAACAACCTCTTCCTCCTCCTAAGTCCGTTGATTCCACCTCTGTTCTCAAAAGATTGCAGTCTGAATTGATGTCTTTGATGATGAGCGGTGATTCTGGTATATCTGCTTTTCCTGAGGAAGACAACATATTCTTGTGGAAAGGAACAATAACAGGAACCAAAGATACAGTGTTTGAAGGCACAGATTACAAGTTATCACTTTCTTTTCCTAATGATTACCCTTTTAAGTCCCCTAAAGTCAAGTTTGAAACTACCTGCTTCCATCCCAATGTTGATCTTCATGGCAATATATGCTTGGACATACTTCAGGATAAATGGTCATCTGCTTATGATGTCAGAACAATTCTACTGTCCATCCAAAGTCTTCTTGGAGAGCCAAACATTAGTTCACCACTAAATCCACAAGCAGCACAGCTTTGGAGCAATCAAGAAGATTACAGGAAGATGGTGGAGAAATTGTACAAAGCTCCAAGTGCTACTGCTTAG
Protein sequence

>Msa0607330

MATINGNTDAAQPIVAPTKQPLPPPKSVDSTSVLKRLQSELMSLMMSGDSGISAFPEEDNIFLWKGTITGTKDTVFEGTDYKLSLSFPNDYPFKSPKVKFETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNPQAAQLWSNQEDYRKMVEKLYKAPSATA*