Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980580 | XP_013451552.1 | 98.562 | 765 | 11 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980580 | sp|O50008|METE1_ARATH | 86.928 | 765 | 100 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1411 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980580 | A0A072UID0 | 98.562 | 765 | 11 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1558 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037030 | Msa0980580 | 0.806575 | 7.697635e-50 | -8.615850e-47 |
| Msa0069240 | Msa0980580 | 0.815959 | 7.076664e-52 | -8.615850e-47 |
| Msa0081250 | Msa0980580 | 0.820776 | 5.737068e-53 | -8.615850e-47 |
| Msa0173780 | Msa0980580 | 0.819175 | 1.333219e-52 | -8.615850e-47 |
| Msa0193850 | Msa0980580 | 0.813581 | 2.380212e-51 | -8.615850e-47 |
| Msa0235710 | Msa0980580 | 0.823551 | 1.303088e-53 | -8.615850e-47 |
| Msa0980580 | Msa1050790 | 0.807032 | 6.160812e-50 | -8.615850e-47 |
| Msa0980580 | Msa1085290 | 0.829044 | 6.414733e-55 | -8.615850e-47 |
| Msa0980580 | Msa1412710 | 0.822798 | 1.952975e-53 | -8.615850e-47 |
| Msa0274440 | Msa0980580 | 0.802738 | 4.864191e-49 | -8.615850e-47 |
| Msa0589360 | Msa0980580 | 0.853364 | 2.509416e-61 | -8.615850e-47 |
| Msa0944220 | Msa0980580 | 0.829821 | 4.153917e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980580 | MtrunA17_Chr6g0461111 | 98.562 | 765 | 11 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1558 |
| Msa0980580 | MtrunA17_Chr7g0253781 | 87.533 | 762 | 95 | 0 | 1 | 762 | 1 | 762 | 0.0 | 1373 |
| Msa0980580 | MtrunA17_Chr3g0118901 | 84.121 | 762 | 121 | 0 | 4 | 765 | 52 | 813 | 0.0 | 1352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980580 | AT5G17920.2 | 86.928 | 765 | 100 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1411 |
| Msa0980580 | AT5G17920.1 | 86.928 | 765 | 100 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1411 |
| Msa0980580 | AT3G03780.1 | 85.752 | 765 | 109 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1388 |
| Msa0980580 | AT3G03780.3 | 85.752 | 765 | 109 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1388 |
| Msa0980580 | AT3G03780.2 | 85.752 | 765 | 109 | 0 | 1 | 765 | 1 | 765 | 0.0 | 1388 |
| Msa0980580 | AT5G20980.2 | 79.106 | 761 | 159 | 0 | 1 | 761 | 49 | 809 | 0.0 | 1283 |
| Msa0980580 | AT5G20980.1 | 79.106 | 761 | 159 | 0 | 1 | 761 | 49 | 809 | 0.0 | 1283 |
Find 250 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTTGCCTTCACTGTTAA+TGG | 0.131956 | 6_4:+19082678 | Msa0980580:CDS |
| ACTGGGCTGTCCATTCTTTC+AGG | 0.146160 | 6_4:+19083138 | Msa0980580:CDS |
| TAAGACTGTTGATTTGATTA+AGG | 0.210765 | 6_4:+19081401 | Msa0980580:CDS |
| AGTTCGCCCTCGAGTCATTC+TGG | 0.216599 | 6_4:+19080316 | Msa0980580:CDS |
| GATCTTGCTTCCTCTTTATC+TGG | 0.218330 | 6_4:+19081267 | Msa0980580:CDS |
| CTTGCTGGTGTCACAGCATT+TGG | 0.244234 | 6_4:+19081357 | Msa0980580:CDS |
| CGTCGCACCCTCCTCAATTC+AGG | 0.250163 | 6_4:-19082282 | None:intergenic |
| CTTCAGTGGGTGGTATTCTT+GGG | 0.256744 | 6_4:-19083673 | None:intergenic |
| TTGTATACTGCAATGACTTT+TGG | 0.258249 | 6_4:-19081046 | None:intergenic |
| TTAAAGTTCCTCTCATCTTC+TGG | 0.258834 | 6_4:-19084170 | None:intergenic |
| GAAGAGCAGCGCCGAGGATT+TGG | 0.260072 | 6_4:+19080344 | Msa0980580:CDS |
| TCAAAGCAGCCTCATCAATT+TGG | 0.273412 | 6_4:-19083070 | None:intergenic |
| TCTTCAGTGGGTGGTATTCT+TGG | 0.276569 | 6_4:-19083674 | None:intergenic |
| TACTTTGGTGAGCAGTTATC+AGG | 0.280762 | 6_4:+19082657 | Msa0980580:CDS |
| CCAATGAAGGGAATGCTTAC+TGG | 0.290098 | 6_4:+19082819 | Msa0980580:CDS |
| TTCACATCAGGTCCCAATTC+GGG | 0.300933 | 6_4:-19080738 | None:intergenic |
| TCAACCATGGCAGTGAGGGC+TGG | 0.302541 | 6_4:-19083800 | None:intergenic |
| TTCATTGCAGAGAAATGATA+TGG | 0.303786 | 6_4:+19082629 | Msa0980580:intron |
| TTCATTCATCACAAAAGAAT+TGG | 0.307477 | 6_4:+19079365 | Msa0980580:five_prime_UTR |
| CTCGTAGGCTGCTGCATTGA+AGG | 0.333165 | 6_4:+19082149 | Msa0980580:intron |
| CATTCCCTTCATTGGGCGTT+TGG | 0.334822 | 6_4:-19082811 | None:intergenic |
| AAGACTGTTGATTTGATTAA+GGG | 0.343641 | 6_4:+19081402 | Msa0980580:CDS |
| GGTTGATTACCTCATCCTTT+TGG | 0.344222 | 6_4:-19081823 | None:intergenic |
| CCACTACATTGTCCCCGAAT+TGG | 0.344256 | 6_4:+19080725 | Msa0980580:CDS |
| GGCGAACTTGAGCTCTCTCT+TGG | 0.344890 | 6_4:-19080301 | None:intergenic |
| CTGACCTCAGGGCATCTATC+TGG | 0.346292 | 6_4:+19080379 | Msa0980580:CDS |
| GTTAAGTATGGCGCTGGAAT+TGG | 0.350124 | 6_4:+19083626 | Msa0980580:CDS |
| GAGAGCAACAAGTATGATAC+TGG | 0.354222 | 6_4:-19080974 | None:intergenic |
| CCAGTAAGCATTCCCTTCAT+TGG | 0.357787 | 6_4:-19082819 | None:intergenic |
| AATGGATGGGTGCAATCTTA+TGG | 0.358906 | 6_4:+19082696 | Msa0980580:CDS |
| TCTTCTCTGACTACATTAAA+CGG | 0.359759 | 6_4:+19081498 | Msa0980580:CDS |
| AATAACTGTGTTGAATATCT+AGG | 0.360248 | 6_4:+19083961 | Msa0980580:three_prime_UTR |
| CTAAGGCAATGACCGTCTTC+TGG | 0.362564 | 6_4:+19082766 | Msa0980580:CDS |
| TTAAGGCAGCCGGGGCTTCA+TGG | 0.368146 | 6_4:+19081169 | Msa0980580:CDS |
| CAACCATGGCAGTGAGGGCT+GGG | 0.374380 | 6_4:-19083799 | None:intergenic |
| TTGTTCGCTGGAGTAGTTGA+TGG | 0.381803 | 6_4:+19081447 | Msa0980580:CDS |
| AGAACCATTGTGTGATTACT+TGG | 0.382276 | 6_4:-19083891 | None:intergenic |
| CACTTGGTCATCTCCATTGC+TGG | 0.385099 | 6_4:-19080576 | None:intergenic |
| TAGTTGATGGAAGGAACATT+TGG | 0.386006 | 6_4:+19081460 | Msa0980580:CDS |
| GACCGTCTTCTGGTCATCTA+TGG | 0.387644 | 6_4:+19082776 | Msa0980580:CDS |
| CACTACATTGTCCCCGAATT+GGG | 0.388330 | 6_4:+19080726 | Msa0980580:CDS |
| GCGAACTTGAGCTCTCTCTT+GGG | 0.389464 | 6_4:-19080300 | None:intergenic |
| AGAAGGTGGCTGCTGACCTC+AGG | 0.394541 | 6_4:+19080367 | Msa0980580:CDS |
| AAGATCCTCACAGGTCTTGC+TGG | 0.395731 | 6_4:+19081342 | Msa0980580:CDS |
| TTTCACATCAGGTCCCAATT+CGG | 0.395805 | 6_4:-19080739 | None:intergenic |
| AGAATGTGGCGCAAGAGAAA+TGG | 0.401824 | 6_4:-19079338 | None:intergenic |
| ACTTTAAATGCTTACCGCCT+TGG | 0.405262 | 6_4:-19080805 | None:intergenic |
| CAGTAAGCATTCCCTTCATT+GGG | 0.413257 | 6_4:-19082818 | None:intergenic |
| ATCAACACCGTTAGCAGGCT+TGG | 0.417649 | 6_4:-19080996 | None:intergenic |
| TCAGATTGCTTTGGCTATCA+AGG | 0.421082 | 6_4:+19083007 | Msa0980580:CDS |
| GGAAGTTGTGGCTGATCTTA+AGG | 0.421801 | 6_4:+19081152 | Msa0980580:CDS |
| CGTTCAACTTGGGTGATTCA+AGG | 0.422273 | 6_4:-19081224 | None:intergenic |
| CCGCCGGTCCATCCGTATCT+TGG | 0.423994 | 6_4:-19080501 | None:intergenic |
| GGATGGACCGGCGGTGAGAT+TGG | 0.424784 | 6_4:+19080510 | Msa0980580:CDS |
| GCCCTGTCACCATTCTCAAT+TGG | 0.428135 | 6_4:+19082841 | Msa0980580:CDS |
| CAGTCTAGCGCTGACATTTG+TGG | 0.429381 | 6_4:-19082190 | None:intergenic |
| TGCCTTCACTGTTAATGGAT+GGG | 0.430204 | 6_4:+19082683 | Msa0980580:CDS |
| TTCCACTTGCAAGCTGGTTG+CGG | 0.432829 | 6_4:-19083838 | None:intergenic |
| CTTGGAGCTCAACGACTTGA+CGG | 0.434452 | 6_4:-19082452 | None:intergenic |
| TTCCGTGATGGAGTTAAGTA+TGG | 0.439738 | 6_4:+19083614 | Msa0980580:CDS |
| TATGATTATCGTCAGCTGTA+TGG | 0.441114 | 6_4:-19084198 | None:intergenic |
| TTGCCTTCACTGTTAATGGA+TGG | 0.442821 | 6_4:+19082682 | Msa0980580:CDS |
| CTCTCAGCAATTTCTTCAGT+GGG | 0.444877 | 6_4:-19083686 | None:intergenic |
| GTGGCTGATCTTAAGGCAGC+CGG | 0.446834 | 6_4:+19081159 | Msa0980580:CDS |
| ATCTGAACAAGCTCACTACT+TGG | 0.448267 | 6_4:+19083115 | Msa0980580:CDS |
| GATACTGGGCCAACGAGGAC+TGG | 0.448664 | 6_4:-19080959 | None:intergenic |
| CTTCTCTGACTACATTAAAC+GGG | 0.450423 | 6_4:+19081499 | Msa0980580:CDS |
| AACATTTAAACCAGATAAAG+AGG | 0.453044 | 6_4:-19081277 | None:intergenic |
| GCTTGTTCAGATTTCCTCAA+TGG | 0.462081 | 6_4:-19083104 | None:intergenic |
| ATGGTCGTGGTTGGAAGGAC+AGG | 0.463252 | 6_4:-19082240 | None:intergenic |
| CAAGGCATTGGCTGGCCAAA+AGG | 0.464757 | 6_4:+19081808 | Msa0980580:CDS |
| AACAAGCTCACTACTTGGAC+TGG | 0.465231 | 6_4:+19083120 | Msa0980580:CDS |
| GCATTGGCCAAGGCATTGGC+TGG | 0.465318 | 6_4:+19081800 | Msa0980580:CDS |
| CATTGGTGATCCTGAAAGAA+TGG | 0.469994 | 6_4:-19083148 | None:intergenic |
| CAGAAGACGGTCATTGCCTT+AGG | 0.471991 | 6_4:-19082765 | None:intergenic |
| AGTTGATGGAAGGAACATTT+GGG | 0.472016 | 6_4:+19081461 | Msa0980580:CDS |
| TCAATTGCATTATATAATAG+AGG | 0.472017 | 6_4:-19084080 | None:intergenic |
| GTCGCACCCTCCTCAATTCA+GGG | 0.472379 | 6_4:-19082281 | None:intergenic |
| GTGAAGCCACCAATCATCTA+TGG | 0.474426 | 6_4:+19082729 | Msa0980580:CDS |
| AATGATATGGTTGAGTACTT+TGG | 0.476014 | 6_4:+19082642 | Msa0980580:CDS |
| GACTTGCTATCAGATTGCTT+TGG | 0.476061 | 6_4:+19082998 | Msa0980580:CDS |
| TTTAATCTCATTATCCAGCT+TGG | 0.477203 | 6_4:-19081735 | None:intergenic |
| CACAAATGTCAGCGCTAGAC+TGG | 0.478055 | 6_4:+19082191 | Msa0980580:CDS |
| TGGCTGATCTTAAGGCAGCC+GGG | 0.481085 | 6_4:+19081160 | Msa0980580:CDS |
| CCTCTCAGCAATTTCTTCAG+TGG | 0.481757 | 6_4:-19083687 | None:intergenic |
| GTTCGCCCTCGAGTCATTCT+GGG | 0.484602 | 6_4:+19080317 | Msa0980580:CDS |
| TTCAGTGGGTGGTATTCTTG+GGG | 0.485774 | 6_4:-19083672 | None:intergenic |
| GAGTGAATGTCATAAACTCC+GGG | 0.485839 | 6_4:-19083650 | None:intergenic |
| ACAGCCTCGTTAGTCACTCT+TGG | 0.488254 | 6_4:-19082031 | None:intergenic |
| CCTCAGGCTCTCCGTGTACA+AGG | 0.488358 | 6_4:-19082494 | None:intergenic |
| AAATGCATTGGCCAAGGCAT+TGG | 0.490445 | 6_4:+19081796 | Msa0980580:CDS |
| TGAGAGAAGGGTTGCCATTG+AGG | 0.496632 | 6_4:+19083090 | Msa0980580:CDS |
| AACGGGCTGGAAGGCATTGT+CGG | 0.498747 | 6_4:+19081516 | Msa0980580:CDS |
| GTCCTTCCAACCACGACCAT+TGG | 0.500531 | 6_4:+19082243 | Msa0980580:CDS |
| CGTAGAATTTATACCTAGGT+TGG | 0.501132 | 6_4:-19082881 | None:intergenic |
| GATCACCAATGTTGGTGTGC+AGG | 0.501767 | 6_4:+19083160 | Msa0980580:CDS |
| GTATGTTAAGTCAATGAAAG+AGG | 0.501933 | 6_4:+19082425 | Msa0980580:CDS |
| AATTTGGATAACAGTAATAC+CGG | 0.501975 | 6_4:-19083054 | None:intergenic |
| GATGGATCAACACCGTTAGC+AGG | 0.502985 | 6_4:-19081001 | None:intergenic |
| AGCCCTCACTGCCATGGTTG+AGG | 0.503520 | 6_4:+19083802 | Msa0980580:CDS |
| TGCAGCATTAGAAGAGAAGA+AGG | 0.504610 | 6_4:-19081984 | None:intergenic |
| CTCCATCACGGAACACCCTT+AGG | 0.505583 | 6_4:-19083604 | None:intergenic |
| CTTACTTTCCACTTGCAAGC+TGG | 0.510199 | 6_4:-19083844 | None:intergenic |
| CTCACATCACCATAGATGAT+TGG | 0.510249 | 6_4:-19082738 | None:intergenic |
| TCCCTCAGACCCCTGAATTG+AGG | 0.512388 | 6_4:+19082271 | Msa0980580:CDS |
| GTTCTGATGAAAAGCTCCTA+AGG | 0.512466 | 6_4:+19083588 | Msa0980580:CDS |
| ACTGTTGATTTGATTAAGGG+TGG | 0.512781 | 6_4:+19081405 | Msa0980580:CDS |
| TGCAGTAAATGCGTTCAACT+TGG | 0.513536 | 6_4:-19081235 | None:intergenic |
| CCGGTCCATCCGTATCTTGG+TGG | 0.513981 | 6_4:-19080498 | None:intergenic |
| GATATACTTGATCCCGGCAC+TGG | 0.515431 | 6_4:-19080412 | None:intergenic |
| GAGGAGAGTAAGAAGATCAA+AGG | 0.515965 | 6_4:-19081023 | None:intergenic |
| GATGAGGCTGCTTTGAGAGA+AGG | 0.517170 | 6_4:+19083077 | Msa0980580:CDS |
| CTAGTTGGTGTCGAACCACT+TGG | 0.518118 | 6_4:-19080592 | None:intergenic |
| GGCCTCAACCATGGCAGTGA+GGG | 0.518147 | 6_4:-19083804 | None:intergenic |
| CATGACCAAACGCCCAATGA+AGG | 0.519465 | 6_4:+19082806 | Msa0980580:CDS |
| CAAGGCAGTGAATGAATACA+AGG | 0.521652 | 6_4:+19080779 | Msa0980580:CDS |
| CTCCTCAATTCAGGGGTCTG+AGG | 0.521845 | 6_4:-19082273 | None:intergenic |
| CTCCTAAGGGTGTTCCGTGA+TGG | 0.523706 | 6_4:+19083602 | Msa0980580:CDS |
| ATGAGGCTGCTTTGAGAGAA+GGG | 0.524459 | 6_4:+19083078 | Msa0980580:CDS |
| CACTTTCGCATACTATGATC+AGG | 0.524644 | 6_4:+19080443 | Msa0980580:CDS |
| AAAATGGCATCACATATTGT+TGG | 0.524862 | 6_4:+19080261 | Msa0980580:exon |
| AGGATCTTGTATGCCTCAGC+AGG | 0.525443 | 6_4:-19081327 | None:intergenic |
| TCAAGGTCTAAGACAAGTGT+TGG | 0.525450 | 6_4:-19081207 | None:intergenic |
| GCATAAGTGAATTTCACATC+AGG | 0.525454 | 6_4:-19080750 | None:intergenic |
| CGCCGAGGATTTGGAGAAGG+TGG | 0.525687 | 6_4:+19080353 | Msa0980580:CDS |
| GACCAATTGAGAATGGTGAC+AGG | 0.529832 | 6_4:-19082843 | None:intergenic |
| ATCCAATGGTCGTGGTTGGA+AGG | 0.530521 | 6_4:-19082245 | None:intergenic |
| TTATTAATTCAGGGAAGTTG+TGG | 0.533029 | 6_4:+19081140 | Msa0980580:intron |
| TTGTGGGTCAATCCCGATTG+TGG | 0.533666 | 6_4:+19083746 | Msa0980580:CDS |
| GATGGAGTTAAGTATGGCGC+TGG | 0.534516 | 6_4:+19083620 | Msa0980580:CDS |
| AGTGGAAAATACTTGTTCGC+TGG | 0.538956 | 6_4:+19081435 | Msa0980580:CDS |
| TGGAAACAGATGTCCAGTGC+CGG | 0.539760 | 6_4:+19080399 | Msa0980580:CDS |
| TCTCTCTTGGGGCCCATGCG+AGG | 0.542482 | 6_4:-19080288 | None:intergenic |
| AGCAGGAATGTCGGCAAAGT+AGG | 0.543007 | 6_4:-19081310 | None:intergenic |
| TAGTATGCGAAAGTGTTGCT+AGG | 0.543484 | 6_4:-19080435 | None:intergenic |
| TAACGCTTCTGTGCCAGCAA+TGG | 0.544073 | 6_4:+19080563 | Msa0980580:CDS |
| TCCTCAATTCAGGGGTCTGA+GGG | 0.544148 | 6_4:-19082272 | None:intergenic |
| GGAAACAGATGTCCAGTGCC+GGG | 0.544517 | 6_4:+19080400 | Msa0980580:CDS |
| TCGTAGGCTGCTGCATTGAA+GGG | 0.544889 | 6_4:+19082150 | Msa0980580:intron |
| TGGTGATGTGAGCCGTCCTA+AGG | 0.546492 | 6_4:+19082749 | Msa0980580:CDS |
| TCTGACTACATTAAACGGGC+TGG | 0.546836 | 6_4:+19081503 | Msa0980580:CDS |
| TCTTGTTAACGAGACCAAGC+TGG | 0.548001 | 6_4:+19081721 | Msa0980580:CDS |
| GAAGGTGGCTGCTGACCTCA+GGG | 0.550007 | 6_4:+19080368 | Msa0980580:CDS |
| GAGGGTGCGACGTGAATACA+AGG | 0.553100 | 6_4:+19082293 | Msa0980580:CDS |
| GACTAACGAGGCTGTTCAGA+AGG | 0.555699 | 6_4:+19082039 | Msa0980580:CDS |
| GAACCCAGCCCTCACTGCCA+TGG | 0.558468 | 6_4:+19083796 | Msa0980580:CDS |
| AATCACACAATGGTTCTGCT+TGG | 0.558655 | 6_4:+19083897 | Msa0980580:three_prime_UTR |
| TCTTTCAGGATCACCAATGT+TGG | 0.558869 | 6_4:+19083152 | Msa0980580:CDS |
| TGGCACAGAAGCGTTACCTC+TGG | 0.562287 | 6_4:-19080556 | None:intergenic |
| AAGGATCCAATGGTCGTGGT+TGG | 0.563856 | 6_4:-19082249 | None:intergenic |
| CAGCGCCGAGGATTTGGAGA+AGG | 0.564983 | 6_4:+19080350 | Msa0980580:CDS |
| TCAGCAATTTCTTCAGTGGG+TGG | 0.566654 | 6_4:-19083683 | None:intergenic |
| TTGCTCTCCAAGCCTGCTAA+CGG | 0.567579 | 6_4:+19080989 | Msa0980580:CDS |
| CATCCACTCAATCATTGACA+TGG | 0.567620 | 6_4:+19083535 | Msa0980580:CDS |
| GAGAGTAGCACATGTGGGTG+TGG | 0.568344 | 6_4:-19083499 | None:intergenic |
| AGCCACCTTCTCCAAATCCT+CGG | 0.568424 | 6_4:-19080355 | None:intergenic |
| CGAACTTGAGCTCTCTCTTG+GGG | 0.569072 | 6_4:-19080299 | None:intergenic |
| TGGATAATGAGATTAAATCA+TGG | 0.569091 | 6_4:+19081741 | Msa0980580:CDS |
| TTTGGATTCGATTTAGTCCG+TGG | 0.569467 | 6_4:+19081375 | Msa0980580:CDS |
| GGAGTGAATGTCATAAACTC+CGG | 0.569880 | 6_4:-19083651 | None:intergenic |
| ACCTCTGGCCATGGAGAAGT+AGG | 0.570023 | 6_4:-19080541 | None:intergenic |
| TTGTTCGTAATGACCAACCT+AGG | 0.571289 | 6_4:+19082868 | Msa0980580:CDS |
| AGAGTAAGAAGATCAAAGGA+TGG | 0.573211 | 6_4:-19081019 | None:intergenic |
| ATTGGCTGGCCAAAAGGATG+AGG | 0.573282 | 6_4:+19081814 | Msa0980580:CDS |
| AGTATCCTGCACACCAACAT+TGG | 0.573572 | 6_4:-19083165 | None:intergenic |
| AGTCGTTGAAGTAAATGCAT+TGG | 0.573863 | 6_4:+19081784 | Msa0980580:CDS |
| GGTGCAGTTCCACCAAGATA+CGG | 0.574039 | 6_4:+19080489 | Msa0980580:CDS |
| TACTGTTATCCAAATTGATG+AGG | 0.574165 | 6_4:+19083061 | Msa0980580:CDS |
| CCACCAAGATACGGATGGAC+CGG | 0.574321 | 6_4:+19080498 | Msa0980580:CDS |
| CTCAGACCCCTGAATTGAGG+AGG | 0.574882 | 6_4:+19082274 | Msa0980580:CDS |
| AACAAAGGACCAATTGAGAA+TGG | 0.575012 | 6_4:-19082850 | None:intergenic |
| CTGGAAGGCATTGTCGGCAA+AGG | 0.577540 | 6_4:+19081522 | Msa0980580:CDS |
| GGCTGATCTTAAGGCAGCCG+GGG | 0.578111 | 6_4:+19081161 | Msa0980580:CDS |
| ACATCACCATAGATGATTGG+TGG | 0.578253 | 6_4:-19082735 | None:intergenic |
| ATGACCAAACGCCCAATGAA+GGG | 0.580031 | 6_4:+19082807 | Msa0980580:CDS |
| AGAAGCGTTACCTCTGGCCA+TGG | 0.581109 | 6_4:-19080550 | None:intergenic |
| TGGTGGAACTGCACCGACCA+TGG | 0.582070 | 6_4:-19080481 | None:intergenic |
| ATCGAATCCAATCTCACCGC+CGG | 0.583417 | 6_4:-19080517 | None:intergenic |
| CAATTCAGGGGTCTGAGGGA+AGG | 0.584337 | 6_4:-19082268 | None:intergenic |
| GCTTGCAAGTGGAAAGTAAG+TGG | 0.584546 | 6_4:+19083847 | Msa0980580:exon |
| CACCCATCCATTAACAGTGA+AGG | 0.585556 | 6_4:-19082685 | None:intergenic |
| TATTGTTGGATATCCTCGCA+TGG | 0.586114 | 6_4:+19080275 | Msa0980580:CDS |
| AGTATGCGAAAGTGTTGCTA+GGG | 0.586639 | 6_4:-19080434 | None:intergenic |
| AACTGCACCGACCATGGCTG+TGG | 0.587132 | 6_4:-19080475 | None:intergenic |
| AGGGAAGGATCCAATGGTCG+TGG | 0.589762 | 6_4:-19082253 | None:intergenic |
| TATGGCGCTGGAATTGGCCC+CGG | 0.591666 | 6_4:+19083632 | Msa0980580:CDS |
| TGGCCTCAACCATGGCAGTG+AGG | 0.592981 | 6_4:-19083805 | None:intergenic |
| GCTAGGGATATACTTGATCC+CGG | 0.593091 | 6_4:-19080418 | None:intergenic |
| TGAAGTAAATGCATTGGCCA+AGG | 0.594599 | 6_4:+19081790 | Msa0980580:CDS |
| CTTTGCCGACATTCCTGCTG+AGG | 0.594935 | 6_4:+19081314 | Msa0980580:CDS |
| ATCCGCAACCAGCTTGCAAG+TGG | 0.598138 | 6_4:+19083836 | Msa0980580:CDS |
| GATATCGATGTCCTTGTACA+CGG | 0.598490 | 6_4:+19082483 | Msa0980580:CDS |
| CTCAATACCACAGCCATGGT+CGG | 0.598544 | 6_4:+19080468 | Msa0980580:CDS |
| TCGCTGGAGTAGTTGATGGA+AGG | 0.600732 | 6_4:+19081451 | Msa0980580:CDS |
| GAGGCATACAAGATCCTCAC+AGG | 0.601009 | 6_4:+19081333 | Msa0980580:CDS |
| GGTCTGAGGGAAGGATCCAA+TGG | 0.603824 | 6_4:-19082259 | None:intergenic |
| AGTGAGGGCTGGGTTCACCT+CGG | 0.604467 | 6_4:-19083789 | None:intergenic |
| TTCTGATGAAAAGCTCCTAA+GGG | 0.605088 | 6_4:+19083589 | Msa0980580:CDS |
| ATTCGATACCTACTTCTCCA+TGG | 0.605953 | 6_4:+19080533 | Msa0980580:CDS |
| AAATTGAATCCATGAAGCCC+CGG | 0.608485 | 6_4:-19081178 | None:intergenic |
| ATTGTTGGATATCCTCGCAT+GGG | 0.610810 | 6_4:+19080276 | Msa0980580:CDS |
| CTCGTTAGTCACTCTTGGAG+AGG | 0.610883 | 6_4:-19082026 | None:intergenic |
| AGCAATCTGATAGCAAGTCT+CGG | 0.611346 | 6_4:-19082994 | None:intergenic |
| ACTACATTAAACGGGCTGGA+AGG | 0.611688 | 6_4:+19081507 | Msa0980580:CDS |
| TCACATCAGGTCCCAATTCG+GGG | 0.616591 | 6_4:-19080737 | None:intergenic |
| GCAGTAAATGCGTTCAACTT+GGG | 0.617258 | 6_4:-19081234 | None:intergenic |
| ATTAAGGGTGGATTTCCTAG+TGG | 0.618636 | 6_4:+19081417 | Msa0980580:CDS |
| CCAATTCGGGGACAATGTAG+TGG | 0.620709 | 6_4:-19080725 | None:intergenic |
| GTATGCCTCAGCAGGAATGT+CGG | 0.624122 | 6_4:-19081319 | None:intergenic |
| CATCCATGTCAATGATTGAG+TGG | 0.624571 | 6_4:-19083538 | None:intergenic |
| CGCCATACTTAACTCCATCA+CGG | 0.631274 | 6_4:-19083616 | None:intergenic |
| GAATGAATACAAGGAAGCCA+AGG | 0.632591 | 6_4:+19080788 | Msa0980580:CDS |
| CCTTGTACACGGAGAGCCTG+AGG | 0.633977 | 6_4:+19082494 | Msa0980580:CDS |
| ACCTACTTCTCCATGGCCAG+AGG | 0.634334 | 6_4:+19080540 | Msa0980580:CDS |
| AGGTTGGTCATTACGAACAA+AGG | 0.635061 | 6_4:-19082865 | None:intergenic |
| ACAAGCTCACTACTTGGACT+GGG | 0.635309 | 6_4:+19083121 | Msa0980580:CDS |
| TGACATTTGTGGCACGACGA+TGG | 0.636880 | 6_4:-19082179 | None:intergenic |
| CAGTTCCACCAAGATACGGA+TGG | 0.637782 | 6_4:+19080493 | Msa0980580:CDS |
| CCAAGATACGGATGGACCGG+CGG | 0.639796 | 6_4:+19080501 | Msa0980580:CDS |
| AGACGGTCATTGCCTTAGGA+CGG | 0.640342 | 6_4:-19082761 | None:intergenic |
| ATTCACTTATGCTTCTCACA+AGG | 0.643040 | 6_4:+19080761 | Msa0980580:CDS |
| AATCAACAGTCTTAGCTCCA+CGG | 0.644960 | 6_4:-19081392 | None:intergenic |
| CTTATCCCAGAATGACTCGA+GGG | 0.646103 | 6_4:-19080322 | None:intergenic |
| ACCAATTGAGAATGGTGACA+GGG | 0.646821 | 6_4:-19082842 | None:intergenic |
| GGTGCTCAATACCACAGCCA+TGG | 0.649243 | 6_4:+19080464 | Msa0980580:CDS |
| TCGCACCCTCCTCAATTCAG+GGG | 0.651181 | 6_4:-19082280 | None:intergenic |
| TCGTGGTTGGAAGGACAGGA+AGG | 0.651820 | 6_4:-19082236 | None:intergenic |
| TCAGACCCCTGAATTGAGGA+GGG | 0.652012 | 6_4:+19082275 | Msa0980580:CDS |
| GATACAATTCCAGTCCTCGT+TGG | 0.652816 | 6_4:+19080950 | Msa0980580:CDS |
| TATTTAATCCAGAAGATGAG+AGG | 0.653978 | 6_4:+19084162 | Msa0980580:three_prime_UTR |
| AGAGCAACAAGTATGATACT+GGG | 0.654520 | 6_4:-19080973 | None:intergenic |
| TCTTATCCCAGAATGACTCG+AGG | 0.662869 | 6_4:-19080323 | None:intergenic |
| AGCCATAGATGACCAGAAGA+CGG | 0.665553 | 6_4:-19082778 | None:intergenic |
| ATCAGAACGAGAATTCTCGA+TGG | 0.673807 | 6_4:-19083573 | None:intergenic |
| TGGTGTGCAGGATACTACTC+AGG | 0.675205 | 6_4:+19083172 | Msa0980580:CDS |
| TGAAGTGAGAGTAGCACATG+TGG | 0.675505 | 6_4:-19083505 | None:intergenic |
| GATGAATGAAAGAGAGAATG+TGG | 0.681675 | 6_4:-19079352 | None:intergenic |
| TGAATACAAGGAAGCCAAGG+CGG | 0.690512 | 6_4:+19080791 | Msa0980580:CDS |
| TAACAAGATCAACAGCAGTG+TGG | 0.698988 | 6_4:-19081706 | None:intergenic |
| GAATCCAAGTAATCACACAA+TGG | 0.703039 | 6_4:+19083887 | Msa0980580:three_prime_UTR |
| GGATAAGAAGAGCAGCGCCG+AGG | 0.705022 | 6_4:+19080338 | Msa0980580:CDS |
| CAGCAATGGAGATGACCAAG+TGG | 0.712873 | 6_4:+19080577 | Msa0980580:CDS |
| CTCTCCAAGAGTGACTAACG+AGG | 0.723815 | 6_4:+19082027 | Msa0980580:CDS |
| CCACTGAAGAAATTGCTGAG+AGG | 0.727912 | 6_4:+19083687 | Msa0980580:CDS |
| GAAGTGAGAGTAGCACATGT+GGG | 0.737320 | 6_4:-19083504 | None:intergenic |
| AGTGAATGTCATAAACTCCG+GGG | 0.741156 | 6_4:-19083649 | None:intergenic |
| TGACACCAGCAAGACCTGTG+AGG | 0.748156 | 6_4:-19081347 | None:intergenic |
| GTTTCCAGATAGATGCCCTG+AGG | 0.749748 | 6_4:-19080383 | None:intergenic |
| AGTATGATACTGGGCCAACG+AGG | 0.751919 | 6_4:-19080964 | None:intergenic |
| CAAAACTCGCAAGTACACCG+AGG | 0.785977 | 6_4:+19083772 | Msa0980580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATCTTAGTTATTA+TGG | + | chr6_4:19081876-19081895 | Msa0980580:intron | 10.0% |
| !!! | AATTTTATCTTAGTTATTAT+GGG | + | chr6_4:19081877-19081896 | Msa0980580:intron | 10.0% |
| !! | AATGATTAGAAAATGTTATA+TGG | - | chr6_4:19079531-19079550 | None:intergenic | 15.0% |
| !! | GAAAAAAAATTTAATAGTCA+GGG | - | chr6_4:19080919-19080938 | None:intergenic | 15.0% |
| !! | TGAAAAAAAATTTAATAGTC+AGG | - | chr6_4:19080920-19080939 | None:intergenic | 15.0% |
| !!! | TATTAAATTTTTTTTCAGCT+TGG | + | chr6_4:19080923-19080942 | Msa0980580:intron | 15.0% |
| !! | TCAATAAAAGAATGAAAAAA+TGG | - | chr6_4:19082367-19082386 | None:intergenic | 15.0% |
| !! | TTTGTAATACAAAACATTAT+CGG | + | chr6_4:19083362-19083381 | Msa0980580:intron | 15.0% |
| !! | GTATTCTTTATTATCATTAC+TGG | + | chr6_4:19079567-19079586 | Msa0980580:intron | 20.0% |
| !!! | CATGATAACATGTTTTTTTA+AGG | + | chr6_4:19080109-19080128 | Msa0980580:intron | 20.0% |
| !! | GTTATGATGTATAAGATTAT+TGG | + | chr6_4:19080147-19080166 | Msa0980580:intron | 20.0% |
| !!! | TTTGCAATTTTTATCTGATA+TGG | + | chr6_4:19080235-19080254 | Msa0980580:intron | 20.0% |
| !! | TTAATAATAATAAGCGAGTT+AGG | - | chr6_4:19081127-19081146 | None:intergenic | 20.0% |
| !! | TCGCTTATTATTATTAATTC+AGG | + | chr6_4:19081130-19081149 | Msa0980580:intron | 20.0% |
| !! | CGCTTATTATTATTAATTCA+GGG | + | chr6_4:19081131-19081150 | Msa0980580:intron | 20.0% |
| !!! | TGGATAAAAGTATTTTATTG+TGG | - | chr6_4:19081916-19081935 | None:intergenic | 20.0% |
| !! | GTTATAAATAATTTGGAAGA+TGG | - | chr6_4:19081936-19081955 | None:intergenic | 20.0% |
| !! | AGCTACTGTTATAAATAATT+TGG | - | chr6_4:19081943-19081962 | None:intergenic | 20.0% |
| !!! | TATAATCTTGTTTCTTTTAC+AGG | + | chr6_4:19082388-19082407 | Msa0980580:intron | 20.0% |
| !!! | TTAGTTCTCATATTCATTTA+CGG | + | chr6_4:19082517-19082536 | Msa0980580:intron | 20.0% |
| !!! | CTTTATTGTTATTTCTAACA+TGG | + | chr6_4:19082951-19082970 | Msa0980580:intron | 20.0% |
| !! | GTTAATTAACTTACATATCT+TGG | + | chr6_4:19083456-19083475 | Msa0980580:intron | 20.0% |
| !!! | AATGCAAATTTTTCGTTTTT+CGG | + | chr6_4:19083929-19083948 | Msa0980580:three_prime_UTR | 20.0% |
| !!! | GAGAAAAATACAAAATGTTT+TGG | - | chr6_4:19084052-19084071 | None:intergenic | 20.0% |
| !!! | AAACATTTTGTATTTTTCTC+TGG | + | chr6_4:19084052-19084071 | Msa0980580:three_prime_UTR | 20.0% |
| !! | TCAATTGCATTATATAATAG+AGG | - | chr6_4:19084083-19084102 | None:intergenic | 20.0% |
| ! | TTCATTCATCACAAAAGAAT+TGG | + | chr6_4:19079365-19079384 | Msa0980580:five_prime_UTR | 25.0% |
| !!! | ATTTGTTGTTGTTATATACC+TGG | + | chr6_4:19079659-19079678 | Msa0980580:intron | 25.0% |
| !! | CTTGCATTTTCATGAAATTA+TGG | + | chr6_4:19079692-19079711 | Msa0980580:intron | 25.0% |
| ! | TATTGAAAACTTAGATGTTG+TGG | + | chr6_4:19079818-19079837 | Msa0980580:intron | 25.0% |
| !! | ATGAATGTTTTATATGATCG+AGG | - | chr6_4:19079844-19079863 | None:intergenic | 25.0% |
| ! | CATATAAAACATTCATGTGT+TGG | + | chr6_4:19079848-19079867 | Msa0980580:intron | 25.0% |
| ! | TGTAAAAGTCACATTTACAT+CGG | - | chr6_4:19080052-19080071 | None:intergenic | 25.0% |
| !! | ATGTGACTTTTACAAAACTT+AGG | + | chr6_4:19080058-19080077 | Msa0980580:intron | 25.0% |
| ! | AATTGTTACTAATGATGCTA+TGG | + | chr6_4:19080654-19080673 | Msa0980580:intron | 25.0% |
| ! | AACATTTAAACCAGATAAAG+AGG | - | chr6_4:19081280-19081299 | None:intergenic | 25.0% |
| !!! | TAAGACTGTTGATTTGATTA+AGG | + | chr6_4:19081401-19081420 | Msa0980580:CDS | 25.0% |
| !!! | AAGACTGTTGATTTGATTAA+GGG | + | chr6_4:19081402-19081421 | Msa0980580:CDS | 25.0% |
| ! | GTGACAATATTATGAATGTT+TGG | - | chr6_4:19081620-19081639 | None:intergenic | 25.0% |
| ! | TGGATAATGAGATTAAATCA+TGG | + | chr6_4:19081741-19081760 | Msa0980580:CDS | 25.0% |
| !! | ATTTACTTCAACGACTTTTT+GGG | - | chr6_4:19081780-19081799 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTGATGTATAAGA+AGG | - | chr6_4:19081847-19081866 | None:intergenic | 25.0% |
| !! | TTTATAACAGTAGCTTTTTG+TGG | + | chr6_4:19081948-19081967 | Msa0980580:intron | 25.0% |
| ! | GAAAAGTGAAAACAATTAGT+TGG | - | chr6_4:19082612-19082631 | None:intergenic | 25.0% |
| ! | AATTTGGATAACAGTAATAC+CGG | - | chr6_4:19083057-19083076 | None:intergenic | 25.0% |
| !! | ATGTTTTGTATTACAAAGCT+TGG | - | chr6_4:19083359-19083378 | None:intergenic | 25.0% |
| ! | AACTTCATCATACATAAGAA+GGG | - | chr6_4:19083398-19083417 | None:intergenic | 25.0% |
| ! | TAACTTCATCATACATAAGA+AGG | - | chr6_4:19083399-19083418 | None:intergenic | 25.0% |
| ! | AATAACTGTGTTGAATATCT+AGG | + | chr6_4:19083961-19083980 | Msa0980580:three_prime_UTR | 25.0% |
| ! | ACAAAAAAAGATGTGTTGTA+GGG | - | chr6_4:19084020-19084039 | None:intergenic | 25.0% |
| ! | AACAAAAAAAGATGTGTTGT+AGG | - | chr6_4:19084021-19084040 | None:intergenic | 25.0% |
| TCACTCTCTCTCAAAAATAA+AGG | + | chr6_4:19079390-19079409 | Msa0980580:five_prime_UTR | 30.0% | |
| CACTCTCTCTCAAAAATAAA+GGG | + | chr6_4:19079391-19079410 | Msa0980580:five_prime_UTR | 30.0% | |
| GAGAGATATAAGAATAAGGA+AGG | - | chr6_4:19079486-19079505 | None:intergenic | 30.0% | |
| GAGAGAGAGATATAAGAATA+AGG | - | chr6_4:19079490-19079509 | None:intergenic | 30.0% | |
| ! | CTTGCTTGCTTTATTAGATT+AGG | + | chr6_4:19079616-19079635 | Msa0980580:intron | 30.0% |
| AATGCAAGTGTAAAAATTCC+AGG | - | chr6_4:19079680-19079699 | None:intergenic | 30.0% | |
| ATTCAATGATCATGTGCATT+AGG | + | chr6_4:19079739-19079758 | Msa0980580:intron | 30.0% | |
| TTCAATGATCATGTGCATTA+GGG | + | chr6_4:19079740-19079759 | Msa0980580:intron | 30.0% | |
| !!! | TGCATTAGGGTTTTAAATAG+CGG | + | chr6_4:19079753-19079772 | Msa0980580:intron | 30.0% |
| TGGTGTAGAATTTCAGATAT+AGG | + | chr6_4:19080167-19080186 | Msa0980580:intron | 30.0% | |
| ! | GATGTGATTTGAAACTATAG+AGG | + | chr6_4:19080199-19080218 | Msa0980580:intron | 30.0% |
| TTATCTGATATGGCAGAAAA+TGG | + | chr6_4:19080245-19080264 | Msa0980580:intron | 30.0% | |
| AAAATGGCATCACATATTGT+TGG | + | chr6_4:19080261-19080280 | Msa0980580:exon | 30.0% | |
| !! | TTGCGTACATTTCATTTTTC+AGG | + | chr6_4:19080831-19080850 | Msa0980580:intron | 30.0% |
| ! | TGTATACTGCAATGACTTTT+GGG | - | chr6_4:19081048-19081067 | None:intergenic | 30.0% |
| ! | TTGTATACTGCAATGACTTT+TGG | - | chr6_4:19081049-19081068 | None:intergenic | 30.0% |
| TTATTAATTCAGGGAAGTTG+TGG | + | chr6_4:19081140-19081159 | Msa0980580:intron | 30.0% | |
| TCTTCTCTGACTACATTAAA+CGG | + | chr6_4:19081498-19081517 | Msa0980580:CDS | 30.0% | |
| TTTAATCTCATTATCCAGCT+TGG | - | chr6_4:19081738-19081757 | None:intergenic | 30.0% | |
| ! | CATTTACTTCAACGACTTTT+TGG | - | chr6_4:19081781-19081800 | None:intergenic | 30.0% |
| GTATGTTAAGTCAATGAAAG+AGG | + | chr6_4:19082425-19082444 | Msa0980580:CDS | 30.0% | |
| ! | CAATTAGTTGGAAGTACAAT+CGG | - | chr6_4:19082600-19082619 | None:intergenic | 30.0% |
| TTCATTGCAGAGAAATGATA+TGG | + | chr6_4:19082629-19082648 | Msa0980580:intron | 30.0% | |
| AATGATATGGTTGAGTACTT+TGG | + | chr6_4:19082642-19082661 | Msa0980580:CDS | 30.0% | |
| TACTGTTATCCAAATTGATG+AGG | + | chr6_4:19083061-19083080 | Msa0980580:CDS | 30.0% | |
| !!! | TTAGTATGCTATTTTGAGCA+AGG | + | chr6_4:19083987-19084006 | Msa0980580:three_prime_UTR | 30.0% |
| !!! | TAGTATGCTATTTTGAGCAA+GGG | + | chr6_4:19083988-19084007 | Msa0980580:three_prime_UTR | 30.0% |
| TATTTAATCCAGAAGATGAG+AGG | + | chr6_4:19084162-19084181 | Msa0980580:three_prime_UTR | 30.0% | |
| GATGAATGAAAGAGAGAATG+TGG | - | chr6_4:19079355-19079374 | None:intergenic | 35.0% | |
| TCAATACTAAACAACCGCAT+TGG | - | chr6_4:19079804-19079823 | None:intergenic | 35.0% | |
| AACATGCATATGTGTCATGT+CGG | - | chr6_4:19079932-19079951 | None:intergenic | 35.0% | |
| ! | TGTGTAACAAGTGTTGTGTT+TGG | + | chr6_4:19080002-19080021 | Msa0980580:intron | 35.0% |
| ! | AACTTAGGATAGAAGCATGT+TGG | + | chr6_4:19080073-19080092 | Msa0980580:intron | 35.0% |
| !! | GGCTCATGTTTTTGTTGTAT+TGG | + | chr6_4:19080626-19080645 | Msa0980580:intron | 35.0% |
| GCATAAGTGAATTTCACATC+AGG | - | chr6_4:19080753-19080772 | None:intergenic | 35.0% | |
| ATTCACTTATGCTTCTCACA+AGG | + | chr6_4:19080761-19080780 | Msa0980580:CDS | 35.0% | |
| !!! | TTCTGATGTTGGTTTTTGTG+TGG | + | chr6_4:19080859-19080878 | Msa0980580:intron | 35.0% |
| !!! | TCTGATGTTGGTTTTTGTGT+GGG | + | chr6_4:19080860-19080879 | Msa0980580:intron | 35.0% |
| AGAGCAACAAGTATGATACT+GGG | - | chr6_4:19080976-19080995 | None:intergenic | 35.0% | |
| AGAGTAAGAAGATCAAAGGA+TGG | - | chr6_4:19081022-19081041 | None:intergenic | 35.0% | |
| !! | ACTGTTGATTTGATTAAGGG+TGG | + | chr6_4:19081405-19081424 | Msa0980580:CDS | 35.0% |
| !! | TAGTTGATGGAAGGAACATT+TGG | + | chr6_4:19081460-19081479 | Msa0980580:CDS | 35.0% |
| !! | AGTTGATGGAAGGAACATTT+GGG | + | chr6_4:19081461-19081480 | Msa0980580:CDS | 35.0% |
| CTTCTCTGACTACATTAAAC+GGG | + | chr6_4:19081499-19081518 | Msa0980580:CDS | 35.0% | |
| AGTCGTTGAAGTAAATGCAT+TGG | + | chr6_4:19081784-19081803 | Msa0980580:CDS | 35.0% | |
| ! | CTTTTTGTGGTTTCATTTGC+AGG | + | chr6_4:19081961-19081980 | Msa0980580:intron | 35.0% |
| ! | ACATATTTTCTTTCCCTCGT+AGG | + | chr6_4:19082134-19082153 | Msa0980580:intron | 35.0% |
| ! | TTTCTTTTACAGGATCTCAG+AGG | + | chr6_4:19082398-19082417 | Msa0980580:intron | 35.0% |
| ! | CATCGATATCAAGCTTTTCT+TGG | - | chr6_4:19082473-19082492 | None:intergenic | 35.0% |
| TGAATATGAGAACTAACCTC+AGG | - | chr6_4:19082513-19082532 | None:intergenic | 35.0% | |
| AACAAAGGACCAATTGAGAA+TGG | - | chr6_4:19082853-19082872 | None:intergenic | 35.0% | |
| CGTAGAATTTATACCTAGGT+TGG | - | chr6_4:19082884-19082903 | None:intergenic | 35.0% | |
| GAGTCGTAGAATTTATACCT+AGG | - | chr6_4:19082888-19082907 | None:intergenic | 35.0% | |
| TTCTACGACTCATCTTAATG+TGG | + | chr6_4:19082897-19082916 | Msa0980580:intron | 35.0% | |
| TGTATTACAAAGCTTGGACA+CGG | - | chr6_4:19083353-19083372 | None:intergenic | 35.0% | |
| TTCTGATGAAAAGCTCCTAA+GGG | + | chr6_4:19083589-19083608 | Msa0980580:CDS | 35.0% | |
| ! | TGCTTGAGAAAAACGTTTTG+TGG | + | chr6_4:19083729-19083748 | Msa0980580:CDS | 35.0% |
| ! | GCTTGAGAAAAACGTTTTGT+GGG | + | chr6_4:19083730-19083749 | Msa0980580:CDS | 35.0% |
| GAATCCAAGTAATCACACAA+TGG | + | chr6_4:19083887-19083906 | Msa0980580:three_prime_UTR | 35.0% | |
| AGAACCATTGTGTGATTACT+TGG | - | chr6_4:19083894-19083913 | None:intergenic | 35.0% | |
| TTAAAGTTCCTCTCATCTTC+TGG | - | chr6_4:19084173-19084192 | None:intergenic | 35.0% | |
| TATGATTATCGTCAGCTGTA+TGG | - | chr6_4:19084201-19084220 | None:intergenic | 35.0% | |
| TATTGTTGGATATCCTCGCA+TGG | + | chr6_4:19080275-19080294 | Msa0980580:CDS | 40.0% | |
| ATTGTTGGATATCCTCGCAT+GGG | + | chr6_4:19080276-19080295 | Msa0980580:CDS | 40.0% | |
| !! | AGTATGCGAAAGTGTTGCTA+GGG | - | chr6_4:19080437-19080456 | None:intergenic | 40.0% |
| !! | TAGTATGCGAAAGTGTTGCT+AGG | - | chr6_4:19080438-19080457 | None:intergenic | 40.0% |
| CACTTTCGCATACTATGATC+AGG | + | chr6_4:19080443-19080462 | Msa0980580:CDS | 40.0% | |
| ATTCGATACCTACTTCTCCA+TGG | + | chr6_4:19080533-19080552 | Msa0980580:CDS | 40.0% | |
| CACCAACTAGTAAGTGATGA+TGG | + | chr6_4:19080605-19080624 | Msa0980580:intron | 40.0% | |
| AGCCATCATCACTTACTAGT+TGG | - | chr6_4:19080610-19080629 | None:intergenic | 40.0% | |
| TTTCACATCAGGTCCCAATT+CGG | - | chr6_4:19080742-19080761 | None:intergenic | 40.0% | |
| CAAGGCAGTGAATGAATACA+AGG | + | chr6_4:19080779-19080798 | Msa0980580:CDS | 40.0% | |
| GAATGAATACAAGGAAGCCA+AGG | + | chr6_4:19080788-19080807 | Msa0980580:CDS | 40.0% | |
| ACTTTAAATGCTTACCGCCT+TGG | - | chr6_4:19080808-19080827 | None:intergenic | 40.0% | |
| ! | TTCAGGACAAGTTCTGATGT+TGG | + | chr6_4:19080848-19080867 | Msa0980580:intron | 40.0% |
| GAGAGCAACAAGTATGATAC+TGG | - | chr6_4:19080977-19080996 | None:intergenic | 40.0% | |
| GAGGAGAGTAAGAAGATCAA+AGG | - | chr6_4:19081026-19081045 | None:intergenic | 40.0% | |
| ! | ATACTGCAATGACTTTTGGG+AGG | - | chr6_4:19081045-19081064 | None:intergenic | 40.0% |
| AGCGAGTTAGGAAAGTAACA+TGG | - | chr6_4:19081115-19081134 | None:intergenic | 40.0% | |
| AAATTGAATCCATGAAGCCC+CGG | - | chr6_4:19081181-19081200 | None:intergenic | 40.0% | |
| ! | TCAAGGTCTAAGACAAGTGT+TGG | - | chr6_4:19081210-19081229 | None:intergenic | 40.0% |
| GCAGTAAATGCGTTCAACTT+GGG | - | chr6_4:19081237-19081256 | None:intergenic | 40.0% | |
| TGCAGTAAATGCGTTCAACT+TGG | - | chr6_4:19081238-19081257 | None:intergenic | 40.0% | |
| GATCTTGCTTCCTCTTTATC+TGG | + | chr6_4:19081267-19081286 | Msa0980580:CDS | 40.0% | |
| TTTGGATTCGATTTAGTCCG+TGG | + | chr6_4:19081375-19081394 | Msa0980580:CDS | 40.0% | |
| AATCAACAGTCTTAGCTCCA+CGG | - | chr6_4:19081395-19081414 | None:intergenic | 40.0% | |
| ! | ATTAAGGGTGGATTTCCTAG+TGG | + | chr6_4:19081417-19081436 | Msa0980580:CDS | 40.0% |
| ! | GCGAACAAGTATTTTCCACT+AGG | - | chr6_4:19081435-19081454 | None:intergenic | 40.0% |
| AGTGGAAAATACTTGTTCGC+TGG | + | chr6_4:19081435-19081454 | Msa0980580:CDS | 40.0% | |
| TAACAAGATCAACAGCAGTG+TGG | - | chr6_4:19081709-19081728 | None:intergenic | 40.0% | |
| ! | TGAAGTAAATGCATTGGCCA+AGG | + | chr6_4:19081790-19081809 | Msa0980580:CDS | 40.0% |
| ! | GGTTGATTACCTCATCCTTT+TGG | - | chr6_4:19081826-19081845 | None:intergenic | 40.0% |
| TGCAGCATTAGAAGAGAAGA+AGG | - | chr6_4:19081987-19082006 | None:intergenic | 40.0% | |
| CATTTCTCGAGTCAGAATTG+CGG | + | chr6_4:19082081-19082100 | Msa0980580:intron | 40.0% | |
| CTACCAAGTAAGATATGCTG+CGG | + | chr6_4:19082316-19082335 | Msa0980580:intron | 40.0% | |
| TACCAAGTAAGATATGCTGC+GGG | + | chr6_4:19082317-19082336 | Msa0980580:intron | 40.0% | |
| GATATCGATGTCCTTGTACA+CGG | + | chr6_4:19082483-19082502 | Msa0980580:CDS | 40.0% | |
| TAATCGACGACATCTGAATG+AGG | - | chr6_4:19082577-19082596 | None:intergenic | 40.0% | |
| TACTTTGGTGAGCAGTTATC+AGG | + | chr6_4:19082657-19082676 | Msa0980580:CDS | 40.0% | |
| TTGCCTTCACTGTTAATGGA+TGG | + | chr6_4:19082682-19082701 | Msa0980580:CDS | 40.0% | |
| ! | TGCCTTCACTGTTAATGGAT+GGG | + | chr6_4:19082683-19082702 | Msa0980580:CDS | 40.0% |
| AATGGATGGGTGCAATCTTA+TGG | + | chr6_4:19082696-19082715 | Msa0980580:CDS | 40.0% | |
| ACATCACCATAGATGATTGG+TGG | - | chr6_4:19082738-19082757 | None:intergenic | 40.0% | |
| CTCACATCACCATAGATGAT+TGG | - | chr6_4:19082741-19082760 | None:intergenic | 40.0% | |
| CAGTAAGCATTCCCTTCATT+GGG | - | chr6_4:19082821-19082840 | None:intergenic | 40.0% | |
| ACCAATTGAGAATGGTGACA+GGG | - | chr6_4:19082845-19082864 | None:intergenic | 40.0% | |
| ! | AGGTTGGTCATTACGAACAA+AGG | - | chr6_4:19082868-19082887 | None:intergenic | 40.0% |
| TTGTTCGTAATGACCAACCT+AGG | + | chr6_4:19082868-19082887 | Msa0980580:CDS | 40.0% | |
| ACGACTCATCTTAATGTGGT+CGG | + | chr6_4:19082901-19082920 | Msa0980580:intron | 40.0% | |
| AGCAATCTGATAGCAAGTCT+CGG | - | chr6_4:19082997-19083016 | None:intergenic | 40.0% | |
| !! | GACTTGCTATCAGATTGCTT+TGG | + | chr6_4:19082998-19083017 | Msa0980580:CDS | 40.0% |
| TCAGATTGCTTTGGCTATCA+AGG | + | chr6_4:19083007-19083026 | Msa0980580:CDS | 40.0% | |
| GTAGAAGACCTTGAAAAAGC+CGG | + | chr6_4:19083035-19083054 | Msa0980580:CDS | 40.0% | |
| !!! | CAGTAATACCGGCTTTTTCA+AGG | - | chr6_4:19083046-19083065 | None:intergenic | 40.0% |
| TCAAAGCAGCCTCATCAATT+TGG | - | chr6_4:19083073-19083092 | None:intergenic | 40.0% | |
| GCTTGTTCAGATTTCCTCAA+TGG | - | chr6_4:19083107-19083126 | None:intergenic | 40.0% | |
| ATCTGAACAAGCTCACTACT+TGG | + | chr6_4:19083115-19083134 | Msa0980580:CDS | 40.0% | |
| ! | CATTGGTGATCCTGAAAGAA+TGG | - | chr6_4:19083151-19083170 | None:intergenic | 40.0% |
| TCTTTCAGGATCACCAATGT+TGG | + | chr6_4:19083152-19083171 | Msa0980580:CDS | 40.0% | |
| ! | ATGCCAATGATCTGAAGTGT+CGG | - | chr6_4:19083224-19083243 | None:intergenic | 40.0% |
| CATCCACTCAATCATTGACA+TGG | + | chr6_4:19083535-19083554 | Msa0980580:CDS | 40.0% | |
| CATCCATGTCAATGATTGAG+TGG | - | chr6_4:19083541-19083560 | None:intergenic | 40.0% | |
| ATCAGAACGAGAATTCTCGA+TGG | - | chr6_4:19083576-19083595 | None:intergenic | 40.0% | |
| GTTCTGATGAAAAGCTCCTA+AGG | + | chr6_4:19083588-19083607 | Msa0980580:CDS | 40.0% | |
| ! | TTCCGTGATGGAGTTAAGTA+TGG | + | chr6_4:19083614-19083633 | Msa0980580:CDS | 40.0% |
| AGTGAATGTCATAAACTCCG+GGG | - | chr6_4:19083652-19083671 | None:intergenic | 40.0% | |
| GAGTGAATGTCATAAACTCC+GGG | - | chr6_4:19083653-19083672 | None:intergenic | 40.0% | |
| GGAGTGAATGTCATAAACTC+CGG | - | chr6_4:19083654-19083673 | None:intergenic | 40.0% | |
| CTCTCAGCAATTTCTTCAGT+GGG | - | chr6_4:19083689-19083708 | None:intergenic | 40.0% | |
| ! | AATCACACAATGGTTCTGCT+TGG | + | chr6_4:19083897-19083916 | Msa0980580:three_prime_UTR | 40.0% |
| AGAATGTGGCGCAAGAGAAA+TGG | - | chr6_4:19079341-19079360 | None:intergenic | 45.0% | |
| CTTATCCCAGAATGACTCGA+GGG | - | chr6_4:19080325-19080344 | None:intergenic | 45.0% | |
| TCTTATCCCAGAATGACTCG+AGG | - | chr6_4:19080326-19080345 | None:intergenic | 45.0% | |
| GCTAGGGATATACTTGATCC+CGG | - | chr6_4:19080421-19080440 | None:intergenic | 45.0% | |
| CACTACATTGTCCCCGAATT+GGG | + | chr6_4:19080726-19080745 | Msa0980580:CDS | 45.0% | |
| TTCACATCAGGTCCCAATTC+GGG | - | chr6_4:19080741-19080760 | None:intergenic | 45.0% | |
| TGAATACAAGGAAGCCAAGG+CGG | + | chr6_4:19080791-19080810 | Msa0980580:CDS | 45.0% | |
| GATACAATTCCAGTCCTCGT+TGG | + | chr6_4:19080950-19080969 | Msa0980580:CDS | 45.0% | |
| GGAAGTTGTGGCTGATCTTA+AGG | + | chr6_4:19081152-19081171 | Msa0980580:CDS | 45.0% | |
| CGTTCAACTTGGGTGATTCA+AGG | - | chr6_4:19081227-19081246 | None:intergenic | 45.0% | |
| TTGTTCGCTGGAGTAGTTGA+TGG | + | chr6_4:19081447-19081466 | Msa0980580:CDS | 45.0% | |
| TCTGACTACATTAAACGGGC+TGG | + | chr6_4:19081503-19081522 | Msa0980580:CDS | 45.0% | |
| !! | ACTACATTAAACGGGCTGGA+AGG | + | chr6_4:19081507-19081526 | Msa0980580:CDS | 45.0% |
| TCTTGTTAACGAGACCAAGC+TGG | + | chr6_4:19081721-19081740 | Msa0980580:CDS | 45.0% | |
| ! | AAATGCATTGGCCAAGGCAT+TGG | + | chr6_4:19081796-19081815 | Msa0980580:CDS | 45.0% |
| ACCAAGTAAGATATGCTGCG+GGG | + | chr6_4:19082318-19082337 | Msa0980580:intron | 45.0% | |
| CTGAATGAGGCACAGGAAAT+TGG | - | chr6_4:19082564-19082583 | None:intergenic | 45.0% | |
| GGCTTTGCCTTCACTGTTAA+TGG | + | chr6_4:19082678-19082697 | Msa0980580:CDS | 45.0% | |
| CACCCATCCATTAACAGTGA+AGG | - | chr6_4:19082688-19082707 | None:intergenic | 45.0% | |
| GTGAAGCCACCAATCATCTA+TGG | + | chr6_4:19082729-19082748 | Msa0980580:CDS | 45.0% | |
| AGCCATAGATGACCAGAAGA+CGG | - | chr6_4:19082781-19082800 | None:intergenic | 45.0% | |
| ATGACCAAACGCCCAATGAA+GGG | + | chr6_4:19082807-19082826 | Msa0980580:CDS | 45.0% | |
| CCAGTAAGCATTCCCTTCAT+TGG | - | chr6_4:19082822-19082841 | None:intergenic | 45.0% | |
| CCAATGAAGGGAATGCTTAC+TGG | + | chr6_4:19082819-19082838 | Msa0980580:CDS | 45.0% | |
| GACCAATTGAGAATGGTGAC+AGG | - | chr6_4:19082846-19082865 | None:intergenic | 45.0% | |
| !! | ATGAGGCTGCTTTGAGAGAA+GGG | + | chr6_4:19083078-19083097 | Msa0980580:CDS | 45.0% |
| AACAAGCTCACTACTTGGAC+TGG | + | chr6_4:19083120-19083139 | Msa0980580:CDS | 45.0% | |
| ACAAGCTCACTACTTGGACT+GGG | + | chr6_4:19083121-19083140 | Msa0980580:CDS | 45.0% | |
| AGTATCCTGCACACCAACAT+TGG | - | chr6_4:19083168-19083187 | None:intergenic | 45.0% | |
| GAACGCAACTTCATGTGTGT+CGG | - | chr6_4:19083279-19083298 | None:intergenic | 45.0% | |
| GAAGTGAGAGTAGCACATGT+GGG | - | chr6_4:19083507-19083526 | None:intergenic | 45.0% | |
| TGAAGTGAGAGTAGCACATG+TGG | - | chr6_4:19083508-19083527 | None:intergenic | 45.0% | |
| CGCCATACTTAACTCCATCA+CGG | - | chr6_4:19083619-19083638 | None:intergenic | 45.0% | |
| ! | GTTAAGTATGGCGCTGGAAT+TGG | + | chr6_4:19083626-19083645 | Msa0980580:CDS | 45.0% |
| TTCAGTGGGTGGTATTCTTG+GGG | - | chr6_4:19083675-19083694 | None:intergenic | 45.0% | |
| CTTCAGTGGGTGGTATTCTT+GGG | - | chr6_4:19083676-19083695 | None:intergenic | 45.0% | |
| TCTTCAGTGGGTGGTATTCT+TGG | - | chr6_4:19083677-19083696 | None:intergenic | 45.0% | |
| TCAGCAATTTCTTCAGTGGG+TGG | - | chr6_4:19083686-19083705 | None:intergenic | 45.0% | |
| CCTCTCAGCAATTTCTTCAG+TGG | - | chr6_4:19083690-19083709 | None:intergenic | 45.0% | |
| CCACTGAAGAAATTGCTGAG+AGG | + | chr6_4:19083687-19083706 | Msa0980580:CDS | 45.0% | |
| !!! | CGAGTTTTGAGACCACAATC+GGG | - | chr6_4:19083761-19083780 | None:intergenic | 45.0% |
| !!! | GCGAGTTTTGAGACCACAAT+CGG | - | chr6_4:19083762-19083781 | None:intergenic | 45.0% |
| CTTACTTTCCACTTGCAAGC+TGG | - | chr6_4:19083847-19083866 | None:intergenic | 45.0% | |
| GCTTGCAAGTGGAAAGTAAG+TGG | + | chr6_4:19083847-19083866 | Msa0980580:exon | 45.0% | |
| CACTTAACTGCACGCGAATG+CGG | - | chr6_4:19079779-19079798 | None:intergenic | 50.0% | |
| TGCAGTTAAGTGCGCCAATG+CGG | + | chr6_4:19079787-19079806 | Msa0980580:intron | 50.0% | |
| !! | TCGGTGTCAAACACTAGACG+CGG | - | chr6_4:19079913-19079932 | None:intergenic | 50.0% |
| CGAACTTGAGCTCTCTCTTG+GGG | - | chr6_4:19080302-19080321 | None:intergenic | 50.0% | |
| GCGAACTTGAGCTCTCTCTT+GGG | - | chr6_4:19080303-19080322 | None:intergenic | 50.0% | |
| AGCCACCTTCTCCAAATCCT+CGG | - | chr6_4:19080358-19080377 | None:intergenic | 50.0% | |
| GTTTCCAGATAGATGCCCTG+AGG | - | chr6_4:19080386-19080405 | None:intergenic | 50.0% | |
| TGGAAACAGATGTCCAGTGC+CGG | + | chr6_4:19080399-19080418 | Msa0980580:CDS | 50.0% | |
| GATATACTTGATCCCGGCAC+TGG | - | chr6_4:19080415-19080434 | None:intergenic | 50.0% | |
| CTCAATACCACAGCCATGGT+CGG | + | chr6_4:19080468-19080487 | Msa0980580:CDS | 50.0% | |
| GGTGCAGTTCCACCAAGATA+CGG | + | chr6_4:19080489-19080508 | Msa0980580:CDS | 50.0% | |
| CAGTTCCACCAAGATACGGA+TGG | + | chr6_4:19080493-19080512 | Msa0980580:CDS | 50.0% | |
| ATCGAATCCAATCTCACCGC+CGG | - | chr6_4:19080520-19080539 | None:intergenic | 50.0% | |
| TAACGCTTCTGTGCCAGCAA+TGG | + | chr6_4:19080563-19080582 | Msa0980580:CDS | 50.0% | |
| CACTTGGTCATCTCCATTGC+TGG | - | chr6_4:19080579-19080598 | None:intergenic | 50.0% | |
| CAGCAATGGAGATGACCAAG+TGG | + | chr6_4:19080577-19080596 | Msa0980580:CDS | 50.0% | |
| !! | CTAGTTGGTGTCGAACCACT+TGG | - | chr6_4:19080595-19080614 | None:intergenic | 50.0% |
| CCAATTCGGGGACAATGTAG+TGG | - | chr6_4:19080728-19080747 | None:intergenic | 50.0% | |
| CCACTACATTGTCCCCGAAT+TGG | + | chr6_4:19080725-19080744 | Msa0980580:CDS | 50.0% | |
| TCACATCAGGTCCCAATTCG+GGG | - | chr6_4:19080740-19080759 | None:intergenic | 50.0% | |
| AGTATGATACTGGGCCAACG+AGG | - | chr6_4:19080967-19080986 | None:intergenic | 50.0% | |
| TTGCTCTCCAAGCCTGCTAA+CGG | + | chr6_4:19080989-19081008 | Msa0980580:CDS | 50.0% | |
| ATCAACACCGTTAGCAGGCT+TGG | - | chr6_4:19080999-19081018 | None:intergenic | 50.0% | |
| GATGGATCAACACCGTTAGC+AGG | - | chr6_4:19081004-19081023 | None:intergenic | 50.0% | |
| AGCAGGAATGTCGGCAAAGT+AGG | - | chr6_4:19081313-19081332 | None:intergenic | 50.0% | |
| GTATGCCTCAGCAGGAATGT+CGG | - | chr6_4:19081322-19081341 | None:intergenic | 50.0% | |
| AGGATCTTGTATGCCTCAGC+AGG | - | chr6_4:19081330-19081349 | None:intergenic | 50.0% | |
| GAGGCATACAAGATCCTCAC+AGG | + | chr6_4:19081333-19081352 | Msa0980580:CDS | 50.0% | |
| AAGATCCTCACAGGTCTTGC+TGG | + | chr6_4:19081342-19081361 | Msa0980580:CDS | 50.0% | |
| !! | CTTGCTGGTGTCACAGCATT+TGG | + | chr6_4:19081357-19081376 | Msa0980580:CDS | 50.0% |
| !! | TCGCTGGAGTAGTTGATGGA+AGG | + | chr6_4:19081451-19081470 | Msa0980580:CDS | 50.0% |
| ! | ATTGGCTGGCCAAAAGGATG+AGG | + | chr6_4:19081814-19081833 | Msa0980580:CDS | 50.0% |
| CTCGTTAGTCACTCTTGGAG+AGG | - | chr6_4:19082029-19082048 | None:intergenic | 50.0% | |
| CTCTCCAAGAGTGACTAACG+AGG | + | chr6_4:19082027-19082046 | Msa0980580:CDS | 50.0% | |
| ACAGCCTCGTTAGTCACTCT+TGG | - | chr6_4:19082034-19082053 | None:intergenic | 50.0% | |
| GACTAACGAGGCTGTTCAGA+AGG | + | chr6_4:19082039-19082058 | Msa0980580:CDS | 50.0% | |
| TTCAATGCAGCAGCCTACGA+GGG | - | chr6_4:19082150-19082169 | None:intergenic | 50.0% | |
| TCGTAGGCTGCTGCATTGAA+GGG | + | chr6_4:19082150-19082169 | Msa0980580:intron | 50.0% | |
| TGACATTTGTGGCACGACGA+TGG | - | chr6_4:19082182-19082201 | None:intergenic | 50.0% | |
| !! | CAGTCTAGCGCTGACATTTG+TGG | - | chr6_4:19082193-19082212 | None:intergenic | 50.0% |
| CACAAATGTCAGCGCTAGAC+TGG | + | chr6_4:19082191-19082210 | Msa0980580:CDS | 50.0% | |
| ATCCAATGGTCGTGGTTGGA+AGG | - | chr6_4:19082248-19082267 | None:intergenic | 50.0% | |
| AAGGATCCAATGGTCGTGGT+TGG | - | chr6_4:19082252-19082271 | None:intergenic | 50.0% | |
| TCCTCAATTCAGGGGTCTGA+GGG | - | chr6_4:19082275-19082294 | None:intergenic | 50.0% | |
| TCAGACCCCTGAATTGAGGA+GGG | + | chr6_4:19082275-19082294 | Msa0980580:CDS | 50.0% | |
| TCCCCGCAGCATATCTTACT+TGG | - | chr6_4:19082322-19082341 | None:intergenic | 50.0% | |
| CTTGGAGCTCAACGACTTGA+CGG | - | chr6_4:19082455-19082474 | None:intergenic | 50.0% | |
| GAGGCACAGGAAATTGGACA+AGG | - | chr6_4:19082558-19082577 | None:intergenic | 50.0% | |
| ACGACATCTGAATGAGGCAC+AGG | - | chr6_4:19082571-19082590 | None:intergenic | 50.0% | |
| AGACGGTCATTGCCTTAGGA+CGG | - | chr6_4:19082764-19082783 | None:intergenic | 50.0% | |
| CAGAAGACGGTCATTGCCTT+AGG | - | chr6_4:19082768-19082787 | None:intergenic | 50.0% | |
| CTAAGGCAATGACCGTCTTC+TGG | + | chr6_4:19082766-19082785 | Msa0980580:CDS | 50.0% | |
| GACCGTCTTCTGGTCATCTA+TGG | + | chr6_4:19082776-19082795 | Msa0980580:CDS | 50.0% | |
| CATGACCAAACGCCCAATGA+AGG | + | chr6_4:19082806-19082825 | Msa0980580:CDS | 50.0% | |
| CATTCCCTTCATTGGGCGTT+TGG | - | chr6_4:19082814-19082833 | None:intergenic | 50.0% | |
| GCCCTGTCACCATTCTCAAT+TGG | + | chr6_4:19082841-19082860 | Msa0980580:CDS | 50.0% | |
| !! | GATGAGGCTGCTTTGAGAGA+AGG | + | chr6_4:19083077-19083096 | Msa0980580:CDS | 50.0% |
| TGAGAGAAGGGTTGCCATTG+AGG | + | chr6_4:19083090-19083109 | Msa0980580:CDS | 50.0% | |
| ACTGGGCTGTCCATTCTTTC+AGG | + | chr6_4:19083138-19083157 | Msa0980580:CDS | 50.0% | |
| GATCACCAATGTTGGTGTGC+AGG | + | chr6_4:19083160-19083179 | Msa0980580:CDS | 50.0% | |
| TGGTGTGCAGGATACTACTC+AGG | + | chr6_4:19083172-19083191 | Msa0980580:CDS | 50.0% | |
| ! | GCACCGACACTTCAGATCAT+TGG | + | chr6_4:19083218-19083237 | Msa0980580:intron | 50.0% |
| GATGGAGTTAAGTATGGCGC+TGG | + | chr6_4:19083620-19083639 | Msa0980580:CDS | 50.0% | |
| TTGTGGGTCAATCCCGATTG+TGG | + | chr6_4:19083746-19083765 | Msa0980580:CDS | 50.0% | |
| CAAAACTCGCAAGTACACCG+AGG | + | chr6_4:19083772-19083791 | Msa0980580:CDS | 50.0% | |
| TTCCACTTGCAAGCTGGTTG+CGG | - | chr6_4:19083841-19083860 | None:intergenic | 50.0% | |
| ! | CGGTGTCAAACACTAGACGC+GGG | - | chr6_4:19079912-19079931 | None:intergenic | 55.0% |
| GGCGAACTTGAGCTCTCTCT+TGG | - | chr6_4:19080304-19080323 | None:intergenic | 55.0% | |
| AGTTCGCCCTCGAGTCATTC+TGG | + | chr6_4:19080316-19080335 | Msa0980580:CDS | 55.0% | |
| GTTCGCCCTCGAGTCATTCT+GGG | + | chr6_4:19080317-19080336 | Msa0980580:CDS | 55.0% | |
| ! | CTGACCTCAGGGCATCTATC+TGG | + | chr6_4:19080379-19080398 | Msa0980580:CDS | 55.0% |
| GGAAACAGATGTCCAGTGCC+GGG | + | chr6_4:19080400-19080419 | Msa0980580:CDS | 55.0% | |
| GGTGCTCAATACCACAGCCA+TGG | + | chr6_4:19080464-19080483 | Msa0980580:CDS | 55.0% | |
| CCACCAAGATACGGATGGAC+CGG | + | chr6_4:19080498-19080517 | Msa0980580:CDS | 55.0% | |
| ACCTACTTCTCCATGGCCAG+AGG | + | chr6_4:19080540-19080559 | Msa0980580:CDS | 55.0% | |
| ACCTCTGGCCATGGAGAAGT+AGG | - | chr6_4:19080544-19080563 | None:intergenic | 55.0% | |
| !! | AGAAGCGTTACCTCTGGCCA+TGG | - | chr6_4:19080553-19080572 | None:intergenic | 55.0% |
| !! | TGGCACAGAAGCGTTACCTC+TGG | - | chr6_4:19080559-19080578 | None:intergenic | 55.0% |
| GTGGCTGATCTTAAGGCAGC+CGG | + | chr6_4:19081159-19081178 | Msa0980580:CDS | 55.0% | |
| TGGCTGATCTTAAGGCAGCC+GGG | + | chr6_4:19081160-19081179 | Msa0980580:CDS | 55.0% | |
| CTTTGCCGACATTCCTGCTG+AGG | + | chr6_4:19081314-19081333 | Msa0980580:CDS | 55.0% | |
| TGACACCAGCAAGACCTGTG+AGG | - | chr6_4:19081350-19081369 | None:intergenic | 55.0% | |
| !! | AACGGGCTGGAAGGCATTGT+CGG | + | chr6_4:19081516-19081535 | Msa0980580:CDS | 55.0% |
| !! | CTGGAAGGCATTGTCGGCAA+AGG | + | chr6_4:19081522-19081541 | Msa0980580:CDS | 55.0% |
| ! | CTTTTGGCCAGCCAATGCCT+TGG | - | chr6_4:19081810-19081829 | None:intergenic | 55.0% |
| !! | CAAGGCATTGGCTGGCCAAA+AGG | + | chr6_4:19081808-19081827 | Msa0980580:CDS | 55.0% |
| CTTCAATGCAGCAGCCTACG+AGG | - | chr6_4:19082151-19082170 | None:intergenic | 55.0% | |
| CTCGTAGGCTGCTGCATTGA+AGG | + | chr6_4:19082149-19082168 | Msa0980580:intron | 55.0% | |
| TCGTGGTTGGAAGGACAGGA+AGG | - | chr6_4:19082239-19082258 | None:intergenic | 55.0% | |
| ATGGTCGTGGTTGGAAGGAC+AGG | - | chr6_4:19082243-19082262 | None:intergenic | 55.0% | |
| GTCCTTCCAACCACGACCAT+TGG | + | chr6_4:19082243-19082262 | Msa0980580:CDS | 55.0% | |
| AGGGAAGGATCCAATGGTCG+TGG | - | chr6_4:19082256-19082275 | None:intergenic | 55.0% | |
| GGTCTGAGGGAAGGATCCAA+TGG | - | chr6_4:19082262-19082281 | None:intergenic | 55.0% | |
| CAATTCAGGGGTCTGAGGGA+AGG | - | chr6_4:19082271-19082290 | None:intergenic | 55.0% | |
| TCCCTCAGACCCCTGAATTG+AGG | + | chr6_4:19082271-19082290 | Msa0980580:CDS | 55.0% | |
| CTCCTCAATTCAGGGGTCTG+AGG | - | chr6_4:19082276-19082295 | None:intergenic | 55.0% | |
| CTCAGACCCCTGAATTGAGG+AGG | + | chr6_4:19082274-19082293 | Msa0980580:CDS | 55.0% | |
| TCGCACCCTCCTCAATTCAG+GGG | - | chr6_4:19082283-19082302 | None:intergenic | 55.0% | |
| GTCGCACCCTCCTCAATTCA+GGG | - | chr6_4:19082284-19082303 | None:intergenic | 55.0% | |
| ! | GAGGGTGCGACGTGAATACA+AGG | + | chr6_4:19082293-19082312 | Msa0980580:CDS | 55.0% |
| ! | TGGTGATGTGAGCCGTCCTA+AGG | + | chr6_4:19082749-19082768 | Msa0980580:CDS | 55.0% |
| GAGAGTAGCACATGTGGGTG+TGG | - | chr6_4:19083502-19083521 | None:intergenic | 55.0% | |
| !! | CTCCTAAGGGTGTTCCGTGA+TGG | + | chr6_4:19083602-19083621 | Msa0980580:CDS | 55.0% |
| CTCCATCACGGAACACCCTT+AGG | - | chr6_4:19083607-19083626 | None:intergenic | 55.0% | |
| ! | GCGTTTTGTGGCCTCAACCA+TGG | - | chr6_4:19083816-19083835 | None:intergenic | 55.0% |
| ! | CTGGTTGCGGATGCGTTTTG+TGG | - | chr6_4:19083828-19083847 | None:intergenic | 55.0% |
| ATCCGCAACCAGCTTGCAAG+TGG | + | chr6_4:19083836-19083855 | Msa0980580:CDS | 55.0% | |
| GGATAAGAAGAGCAGCGCCG+AGG | + | chr6_4:19080338-19080357 | Msa0980580:CDS | 60.0% | |
| ! | GAAGAGCAGCGCCGAGGATT+TGG | + | chr6_4:19080344-19080363 | Msa0980580:CDS | 60.0% |
| ! | CAGCGCCGAGGATTTGGAGA+AGG | + | chr6_4:19080350-19080369 | Msa0980580:CDS | 60.0% |
| CGCCGAGGATTTGGAGAAGG+TGG | + | chr6_4:19080353-19080372 | Msa0980580:CDS | 60.0% | |
| AGAAGGTGGCTGCTGACCTC+AGG | + | chr6_4:19080367-19080386 | Msa0980580:CDS | 60.0% | |
| GAAGGTGGCTGCTGACCTCA+GGG | + | chr6_4:19080368-19080387 | Msa0980580:CDS | 60.0% | |
| ! | AACTGCACCGACCATGGCTG+TGG | - | chr6_4:19080478-19080497 | None:intergenic | 60.0% |
| ! | TGGTGGAACTGCACCGACCA+TGG | - | chr6_4:19080484-19080503 | None:intergenic | 60.0% |
| CCGGTCCATCCGTATCTTGG+TGG | - | chr6_4:19080501-19080520 | None:intergenic | 60.0% | |
| CCAAGATACGGATGGACCGG+CGG | + | chr6_4:19080501-19080520 | Msa0980580:CDS | 60.0% | |
| GATACTGGGCCAACGAGGAC+TGG | - | chr6_4:19080962-19080981 | None:intergenic | 60.0% | |
| GGCTGATCTTAAGGCAGCCG+GGG | + | chr6_4:19081161-19081180 | Msa0980580:CDS | 60.0% | |
| TTAAGGCAGCCGGGGCTTCA+TGG | + | chr6_4:19081169-19081188 | Msa0980580:CDS | 60.0% | |
| !! | GCATTGGCCAAGGCATTGGC+TGG | + | chr6_4:19081800-19081819 | Msa0980580:CDS | 60.0% |
| CGTCGCACCCTCCTCAATTC+AGG | - | chr6_4:19082285-19082304 | None:intergenic | 60.0% | |
| GCTGCGGGGAGCTGATAACT+TGG | + | chr6_4:19082332-19082351 | Msa0980580:intron | 60.0% | |
| CCTCAGGCTCTCCGTGTACA+AGG | - | chr6_4:19082497-19082516 | None:intergenic | 60.0% | |
| CCTTGTACACGGAGAGCCTG+AGG | + | chr6_4:19082494-19082513 | Msa0980580:CDS | 60.0% | |
| TTACCCGTCAGCGTCGTGTC+TGG | + | chr6_4:19083324-19083343 | Msa0980580:intron | 60.0% | |
| ACACCAGACACGACGCTGAC+GGG | - | chr6_4:19083330-19083349 | None:intergenic | 60.0% | |
| GACACCAGACACGACGCTGA+CGG | - | chr6_4:19083331-19083350 | None:intergenic | 60.0% | |
| ! | TATGGCGCTGGAATTGGCCC+CGG | + | chr6_4:19083632-19083651 | Msa0980580:CDS | 60.0% |
| AGTGAGGGCTGGGTTCACCT+CGG | - | chr6_4:19083792-19083811 | None:intergenic | 60.0% | |
| CAACCATGGCAGTGAGGGCT+GGG | - | chr6_4:19083802-19083821 | None:intergenic | 60.0% | |
| TCAACCATGGCAGTGAGGGC+TGG | - | chr6_4:19083803-19083822 | None:intergenic | 60.0% | |
| AGCCCTCACTGCCATGGTTG+AGG | + | chr6_4:19083802-19083821 | Msa0980580:CDS | 60.0% | |
| GGCCTCAACCATGGCAGTGA+GGG | - | chr6_4:19083807-19083826 | None:intergenic | 60.0% | |
| TGGCCTCAACCATGGCAGTG+AGG | - | chr6_4:19083808-19083827 | None:intergenic | 60.0% | |
| TCTCTCTTGGGGCCCATGCG+AGG | - | chr6_4:19080291-19080310 | None:intergenic | 65.0% | |
| CCGCCGGTCCATCCGTATCT+TGG | - | chr6_4:19080504-19080523 | None:intergenic | 65.0% | |
| GGATGGACCGGCGGTGAGAT+TGG | + | chr6_4:19080510-19080529 | Msa0980580:CDS | 65.0% | |
| GAACCCAGCCCTCACTGCCA+TGG | + | chr6_4:19083796-19083815 | Msa0980580:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 19079336 | 19084226 | 19079336 | ID=Msa0980580;Name=Msa0980580 |
| chr6_4 | mRNA | 19079336 | 19084226 | 19079336 | ID=Msa0980580-mRNA-1;Parent=Msa0980580;Name=Msa0980580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|0.90|0.83|12|361|765 |
| chr6_4 | exon | 19079336 | 19079412 | 19079336 | ID=Msa0980580-mRNA-1:exon:5890;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19080261 | 19080613 | 19080261 | ID=Msa0980580-mRNA-1:exon:5891;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19080725 | 19080812 | 19080725 | ID=Msa0980580-mRNA-1:exon:5892;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19080941 | 19081068 | 19080941 | ID=Msa0980580-mRNA-1:exon:5893;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19081152 | 19081543 | 19081152 | ID=Msa0980580-mRNA-1:exon:5894;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19081672 | 19081835 | 19081672 | ID=Msa0980580-mRNA-1:exon:5895;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19081983 | 19082063 | 19081983 | ID=Msa0980580-mRNA-1:exon:5896;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19082156 | 19082322 | 19082156 | ID=Msa0980580-mRNA-1:exon:5897;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19082410 | 19082515 | 19082410 | ID=Msa0980580-mRNA-1:exon:5898;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19082639 | 19082889 | 19082639 | ID=Msa0980580-mRNA-1:exon:5899;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19082992 | 19083193 | 19082992 | ID=Msa0980580-mRNA-1:exon:5900;Parent=Msa0980580-mRNA-1 |
| chr6_4 | exon | 19083497 | 19084226 | 19083497 | ID=Msa0980580-mRNA-1:exon:5901;Parent=Msa0980580-mRNA-1 |
| chr6_4 | five_prime_UTR | 19079336 | 19079412 | 19079336 | ID=Msa0980580-mRNA-1:five_prime_utr;Parent=Msa0980580-mRNA-1 |
| chr6_4 | five_prime_UTR | 19080261 | 19080263 | 19080261 | ID=Msa0980580-mRNA-1:five_prime_utr;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19080264 | 19080613 | 19080264 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19080725 | 19080812 | 19080725 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19080941 | 19081068 | 19080941 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19081152 | 19081543 | 19081152 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19081672 | 19081835 | 19081672 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19081983 | 19082063 | 19081983 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19082156 | 19082322 | 19082156 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19082410 | 19082515 | 19082410 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19082639 | 19082889 | 19082639 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19082992 | 19083193 | 19082992 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | CDS | 19083497 | 19083865 | 19083497 | ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1 |
| chr6_4 | three_prime_UTR | 19083866 | 19084226 | 19083866 | ID=Msa0980580-mRNA-1:three_prime_utr;Parent=Msa0980580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
