AlfalfaGEDB | Msa0980580

M. sativa cultivar zhongmu-4 / Msa0980580

KEGG: K00549
GO: -
PFAM: PF08267.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980580	XP_013451552.1	98.562	765	11	0	1	765	1	765	0.0	1558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980580	sp\|O50008\|METE1_ARATH	86.928	765	100	0	1	765	1	765	0.0	1411

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0980580	A0A072UID0	98.562	765	11	0	1	765	1	765	0.0	1558

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037030	Msa0980580	0.806575	7.697635e-50	-8.615850e-47
Msa0069240	Msa0980580	0.815959	7.076664e-52	-8.615850e-47
Msa0081250	Msa0980580	0.820776	5.737068e-53	-8.615850e-47
Msa0173780	Msa0980580	0.819175	1.333219e-52	-8.615850e-47
Msa0193850	Msa0980580	0.813581	2.380212e-51	-8.615850e-47
Msa0235710	Msa0980580	0.823551	1.303088e-53	-8.615850e-47
Msa0274440	Msa0980580	0.802738	4.864191e-49	-8.615850e-47
Msa0589360	Msa0980580	0.853364	2.509416e-61	-8.615850e-47
Msa0944220	Msa0980580	0.829821	4.153917e-55	-8.615850e-47
Msa0980580	Msa1050790	0.807032	6.160812e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0980580	MtrunA17_Chr6g0461111	98.562	765	11	1	765	1	765	1558
Msa0980580	MtrunA17_Chr7g0253781	87.533	762	95	1	762	1	762	1373
Msa0980580	MtrunA17_Chr3g0118901	84.121	762	121	4	765	52	813	1352

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0980580	AT5G17920.2	86.928	765	100	1	765	1	765	1411
Msa0980580	AT5G17920.1	86.928	765	100	1	765	1	765	1411
Msa0980580	AT3G03780.1	85.752	765	109	1	765	1	765	1388
Msa0980580	AT3G03780.3	85.752	765	109	1	765	1	765	1388
Msa0980580	AT3G03780.2	85.752	765	109	1	765	1	765	1388
Msa0980580	AT5G20980.2	79.106	761	159	1	761	49	809	1283
Msa0980580	AT5G20980.1	79.106	761	159	1	761	49	809	1283

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Find 250 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCATCACATATTGT+TGG	0.524862	6_4:+19080261	Msa0980580:exon
AAATGCATTGGCCAAGGCAT+TGG	0.490445	6_4:+19081796	Msa0980580:CDS
AAATTGAATCCATGAAGCCC+CGG	0.608485	6_4:-19081178	None:intergenic
AACAAAGGACCAATTGAGAA+TGG	0.575012	6_4:-19082850	None:intergenic
AACAAGCTCACTACTTGGAC+TGG	0.465231	6_4:+19083120	Msa0980580:CDS
AACATTTAAACCAGATAAAG+AGG	0.453044	6_4:-19081277	None:intergenic
AACGGGCTGGAAGGCATTGT+CGG	0.498747	6_4:+19081516	Msa0980580:CDS
AACTGCACCGACCATGGCTG+TGG	0.587132	6_4:-19080475	None:intergenic
AAGACTGTTGATTTGATTAA+GGG	0.343641	6_4:+19081402	Msa0980580:CDS
AAGATCCTCACAGGTCTTGC+TGG	0.395731	6_4:+19081342	Msa0980580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACTCTCTCTCAAAAATAA+AGG	+	chr6_4:19079390-19079409	Msa0980580:five_prime_UTR	30.0%
CACTCTCTCTCAAAAATAAA+GGG	+	chr6_4:19079391-19079410	Msa0980580:five_prime_UTR	30.0%
GAGAGATATAAGAATAAGGA+AGG	-	chr6_4:19079486-19079505	None:intergenic	30.0%
GAGAGAGAGATATAAGAATA+AGG	-	chr6_4:19079490-19079509	None:intergenic	30.0%
AATGCAAGTGTAAAAATTCC+AGG	-	chr6_4:19079680-19079699	None:intergenic	30.0%
ATTCAATGATCATGTGCATT+AGG	+	chr6_4:19079739-19079758	Msa0980580:intron	30.0%
TTCAATGATCATGTGCATTA+GGG	+	chr6_4:19079740-19079759	Msa0980580:intron	30.0%
TGGTGTAGAATTTCAGATAT+AGG	+	chr6_4:19080167-19080186	Msa0980580:intron	30.0%
TTATCTGATATGGCAGAAAA+TGG	+	chr6_4:19080245-19080264	Msa0980580:intron	30.0%
AAAATGGCATCACATATTGT+TGG	+	chr6_4:19080261-19080280	Msa0980580:exon	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	19079336	19084226	19079336	ID=Msa0980580;Name=Msa0980580
chr6_4	mRNA	19079336	19084226	19079336	ID=Msa0980580-mRNA-1;Parent=Msa0980580;Name=Msa0980580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80\|1\|1\|1\|0.90\|0.83\|12\|361\|765
chr6_4	exon	19079336	19079412	19079336	ID=Msa0980580-mRNA-1:exon:5890;Parent=Msa0980580-mRNA-1
chr6_4	exon	19080261	19080613	19080261	ID=Msa0980580-mRNA-1:exon:5891;Parent=Msa0980580-mRNA-1
chr6_4	exon	19080725	19080812	19080725	ID=Msa0980580-mRNA-1:exon:5892;Parent=Msa0980580-mRNA-1
chr6_4	exon	19080941	19081068	19080941	ID=Msa0980580-mRNA-1:exon:5893;Parent=Msa0980580-mRNA-1
chr6_4	exon	19081152	19081543	19081152	ID=Msa0980580-mRNA-1:exon:5894;Parent=Msa0980580-mRNA-1
chr6_4	exon	19081672	19081835	19081672	ID=Msa0980580-mRNA-1:exon:5895;Parent=Msa0980580-mRNA-1
chr6_4	exon	19081983	19082063	19081983	ID=Msa0980580-mRNA-1:exon:5896;Parent=Msa0980580-mRNA-1
chr6_4	exon	19082156	19082322	19082156	ID=Msa0980580-mRNA-1:exon:5897;Parent=Msa0980580-mRNA-1
chr6_4	exon	19082410	19082515	19082410	ID=Msa0980580-mRNA-1:exon:5898;Parent=Msa0980580-mRNA-1
chr6_4	exon	19082639	19082889	19082639	ID=Msa0980580-mRNA-1:exon:5899;Parent=Msa0980580-mRNA-1
chr6_4	exon	19082992	19083193	19082992	ID=Msa0980580-mRNA-1:exon:5900;Parent=Msa0980580-mRNA-1
chr6_4	exon	19083497	19084226	19083497	ID=Msa0980580-mRNA-1:exon:5901;Parent=Msa0980580-mRNA-1
chr6_4	five_prime_UTR	19079336	19079412	19079336	ID=Msa0980580-mRNA-1:five_prime_utr;Parent=Msa0980580-mRNA-1
chr6_4	five_prime_UTR	19080261	19080263	19080261	ID=Msa0980580-mRNA-1:five_prime_utr;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19080264	19080613	19080264	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19080725	19080812	19080725	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19080941	19081068	19080941	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19081152	19081543	19081152	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19081672	19081835	19081672	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19081983	19082063	19081983	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19082156	19082322	19082156	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19082410	19082515	19082410	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19082639	19082889	19082639	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19082992	19083193	19082992	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	CDS	19083497	19083865	19083497	ID=Msa0980580-mRNA-1:cds;Parent=Msa0980580-mRNA-1
chr6_4	three_prime_UTR	19083866	19084226	19083866	ID=Msa0980580-mRNA-1:three_prime_utr;Parent=Msa0980580-mRNA-1

Gene Sequence

>Msa0980580

ATGGCATCACATATTGTTGGATATCCTCGCATGGGCCCCAAGAGAGAGCTCAAGTTCGCCCTCGAGTCATTCTGGGATAAGAAGAGCAGCGCCGAGGATTTGGAGAAGGTGGCTGCTGACCTCAGGGCATCTATCTGGAAACAGATGTCCAGTGCCGGGATCAAGTATATCCCTAGCAACACTTTCGCATACTATGATCAGGTGCTCAATACCACAGCCATGGTCGGTGCAGTTCCACCAAGATACGGATGGACCGGCGGTGAGATTGGATTCGATACCTACTTCTCCATGGCCAGAGGTAACGCTTCTGTGCCAGCAATGGAGATGACCAAGTGGTTCGACACCAACTACCACTACATTGTCCCCGAATTGGGACCTGATGTGAAATTCACTTATGCTTCTCACAAGGCAGTGAATGAATACAAGGAAGCCAAGGCGCTTGGAGTCGATACAATTCCAGTCCTCGTTGGCCCAGTATCATACTTGTTGCTCTCCAAGCCTGCTAACGGTGTTGATCCATCCTTTGATCTTCTTACTCTCCTCCCAAAAGTCATTGCAGTATACAAGGAAGTTGTGGCTGATCTTAAGGCAGCCGGGGCTTCATGGATTCAATTTGATGAACCAACACTTGTCTTAGACCTTGAATCACCCAAGTTGAACGCATTTACTGCAGCATACTCAGATCTTGCTTCCTCTTTATCTGGTTTAAATGTTCTTGTTGAGACCTACTTTGCCGACATTCCTGCTGAGGCATACAAGATCCTCACAGGTCTTGCTGGTGTCACAGCATTTGGATTCGATTTAGTCCGTGGAGCTAAGACTGTTGATTTGATTAAGGGTGGATTTCCTAGTGGAAAATACTTGTTCGCTGGAGTAGTTGATGGAAGGAACATTTGGGCTAATGATCTTACTTCTTCTCTGACTACATTAAACGGGCTGGAAGGCATTGTCGGCAAAGATAAACTCGTTGTGTCAACATCTTGCTCACTTCTCCACACTGCTGTTGATCTTGTTAACGAGACCAAGCTGGATAATGAGATTAAATCATGGCTAGCTTTTGCTGCCCAAAAAGTCGTTGAAGTAAATGCATTGGCCAAGGCATTGGCTGGCCAAAAGGATGAGGCCTTCTTCTCTTCTAATGCTGCAGCTCTCGCTTCAAGAAAGTCCTCTCCAAGAGTGACTAACGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGTCGTGCCACAAATGTCAGCGCTAGACTGGATGCACAACAAAAGAAGCTCAACCTTCCTGTCCTTCCAACCACGACCATTGGATCCTTCCCTCAGACCCCTGAATTGAGGAGGGTGCGACGTGAATACAAGGCTACCAAGATCTCAGAGGAAGAGTATGTTAAGTCAATGAAAGAGGAAATCCGTCAAGTCGTTGAGCTCCAAGAAAAGCTTGATATCGATGTCCTTGTACACGGAGAGCCTGAGAGAAATGATATGGTTGAGTACTTTGGTGAGCAGTTATCAGGCTTTGCCTTCACTGTTAATGGATGGGTGCAATCTTATGGATCTCGCTGTGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGTCCTAAGGCAATGACCGTCTTCTGGTCATCTATGGCTCAGAGCATGACCAAACGCCCAATGAAGGGAATGCTTACTGGCCCTGTCACCATTCTCAATTGGTCCTTTGTTCGTAATGACCAACCTAGATCCGAGACTTGCTATCAGATTGCTTTGGCTATCAAGGATGAAGTAGAAGACCTTGAAAAAGCCGGTATTACTGTTATCCAAATTGATGAGGCTGCTTTGAGAGAAGGGTTGCCATTGAGGAAATCTGAACAAGCTCACTACTTGGACTGGGCTGTCCATTCTTTCAGGATCACCAATGTTGGTGTGCAGGATACTACTCAGATCCACACCCACATGTGCTACTCTCACTTCAATGATATCATCCACTCAATCATTGACATGGATGCTGATGTGATCACCATCGAGAATTCTCGTTCTGATGAAAAGCTCCTAAGGGTGTTCCGTGATGGAGTTAAGTATGGCGCTGGAATTGGCCCCGGAGTTTATGACATTCACTCCCCAAGAATACCACCCACTGAAGAAATTGCTGAGAGGATCAACAAGATGCTTGCAGTGCTTGAGAAAAACGTTTTGTGGGTCAATCCCGATTGTGGTCTCAAAACTCGCAAGTACACCGAGGTGAACCCAGCCCTCACTGCCATGGTTGAGGCCACAAAACGCATCCGCAACCAGCTTGCAAGTGGAAAGTAA

Protein sequence

>Msa0980580

MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLEKVAADLRASIWKQMSSAGIKYIPSNTFAYYDQVLNTTAMVGAVPPRYGWTGGEIGFDTYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPDVKFTYASHKAVNEYKEAKALGVDTIPVLVGPVSYLLLSKPANGVDPSFDLLTLLPKVIAVYKEVVADLKAAGASWIQFDEPTLVLDLESPKLNAFTAAYSDLASSLSGLNVLVETYFADIPAEAYKILTGLAGVTAFGFDLVRGAKTVDLIKGGFPSGKYLFAGVVDGRNIWANDLTSSLTTLNGLEGIVGKDKLVVSTSCSLLHTAVDLVNETKLDNEIKSWLAFAAQKVVEVNALAKALAGQKDEAFFSSNAAALASRKSSPRVTNEAVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTPELRRVRREYKATKISEEEYVKSMKEEIRQVVELQEKLDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSSMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRSETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQAHYLDWAVHSFRITNVGVQDTTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRSDEKLLRVFRDGVKYGAGIGPGVYDIHSPRIPPTEEIAERINKMLAVLEKNVLWVNPDCGLKTRKYTEVNPALTAMVEATKRIRNQLASGK*