Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070660 | XP_013467734.1 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070660 | sp|Q08891|FACR2_ARATH | 64.623 | 571 | 185 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070660 | A0A072VJJ5 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070660 | Msa0115180 | 0.845881 | 3.080047e-59 | -8.615850e-47 |
| Msa0070660 | Msa0118550 | 0.990593 | 2.236990e-183 | -8.615850e-47 |
| Msa0070660 | Msa0161830 | 0.971210 | 8.307078e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070660 | MtrunA17_Chr1g0176054 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1235 |
| Msa0070660 | MtrunA17_Chr2g0321181 | 41.483 | 499 | 269 | 7 | 120 | 608 | 6 | 491 | 3.12e-133 | 399 |
| Msa0070660 | MtrunA17_Chr4g0026691 | 39.880 | 499 | 277 | 7 | 120 | 608 | 6 | 491 | 1.40e-131 | 394 |
| Msa0070660 | MtrunA17_Chr4g0026701 | 39.921 | 506 | 279 | 7 | 114 | 608 | 1 | 492 | 6.40e-131 | 393 |
| Msa0070660 | MtrunA17_Chr2g0321201 | 40.562 | 498 | 274 | 7 | 120 | 608 | 8 | 492 | 1.65e-130 | 392 |
| Msa0070660 | MtrunA17_Chr4g0026711 | 38.153 | 498 | 285 | 10 | 123 | 608 | 9 | 495 | 9.80e-118 | 359 |
| Msa0070660 | MtrunA17_Chr4g0026771 | 37.074 | 499 | 289 | 8 | 123 | 608 | 6 | 492 | 8.25e-116 | 354 |
| Msa0070660 | MtrunA17_Chr6g0465391 | 36.200 | 500 | 267 | 9 | 120 | 610 | 6 | 462 | 3.67e-103 | 320 |
| Msa0070660 | MtrunA17_Chr5g0419501 | 34.190 | 389 | 189 | 9 | 123 | 506 | 9 | 335 | 5.30e-63 | 211 |
| Msa0070660 | MtrunA17_Chr4g0026891 | 38.618 | 246 | 129 | 5 | 123 | 358 | 6 | 239 | 1.46e-50 | 176 |
| Msa0070660 | MtrunA17_Chr5g0431241 | 48.387 | 124 | 61 | 2 | 120 | 242 | 6 | 127 | 1.67e-31 | 119 |
| Msa0070660 | MtrunA17_Chr5g0431251 | 39.167 | 120 | 68 | 1 | 314 | 428 | 11 | 130 | 8.14e-28 | 109 |
| Msa0070660 | MtrunA17_Chr4g0026911 | 32.418 | 182 | 119 | 2 | 428 | 605 | 3 | 184 | 1.20e-26 | 107 |
| Msa0070660 | MtrunA17_Chr5g0431281 | 31.658 | 199 | 118 | 7 | 418 | 608 | 22 | 210 | 1.13e-22 | 96.7 |
| Msa0070660 | MtrunA17_Chr6g0465381 | 36.111 | 144 | 90 | 2 | 362 | 504 | 1 | 143 | 2.78e-20 | 88.6 |
| Msa0070660 | MtrunA17_Chr4g0026901 | 54.545 | 55 | 25 | 0 | 346 | 400 | 16 | 70 | 2.09e-17 | 77.4 |
| Msa0070660 | MtrunA17_Chr5g0431271 | 46.269 | 67 | 36 | 0 | 362 | 428 | 1 | 67 | 1.06e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0070660 | AT3G11980.1 | 64.623 | 571 | 185 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Msa0070660 | AT3G56700.2 | 46.559 | 494 | 232 | 7 | 116 | 604 | 73 | 539 | 2.23e-153 | 453 |
| Msa0070660 | AT3G56700.1 | 43.927 | 494 | 224 | 8 | 116 | 604 | 73 | 518 | 7.35e-138 | 412 |
| Msa0070660 | AT5G22500.1 | 41.833 | 502 | 261 | 10 | 121 | 608 | 6 | 490 | 4.52e-128 | 386 |
| Msa0070660 | AT3G44540.1 | 39.960 | 503 | 269 | 10 | 122 | 608 | 7 | 492 | 8.66e-127 | 383 |
| Msa0070660 | AT4G33790.1 | 39.479 | 499 | 280 | 6 | 118 | 607 | 8 | 493 | 4.77e-122 | 370 |
| Msa0070660 | AT3G44550.1 | 40.472 | 509 | 269 | 8 | 118 | 608 | 3 | 495 | 1.04e-121 | 370 |
| Msa0070660 | AT3G44560.1 | 41.352 | 503 | 263 | 10 | 123 | 608 | 8 | 495 | 9.53e-116 | 354 |
| Msa0070660 | AT5G22500.2 | 43.655 | 394 | 203 | 6 | 122 | 509 | 7 | 387 | 2.16e-109 | 335 |
| Msa0070660 | AT3G44560.3 | 40.355 | 451 | 242 | 9 | 123 | 561 | 8 | 443 | 9.64e-99 | 309 |
| Msa0070660 | AT3G44560.2 | 42.386 | 394 | 209 | 5 | 123 | 509 | 8 | 390 | 7.33e-96 | 300 |
| Msa0070660 | AT3G44540.2 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 9.25e-94 | 291 |
| Msa0070660 | AT3G44540.3 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 9.25e-94 | 291 |
| Msa0070660 | AT4G33790.2 | 39.487 | 390 | 215 | 5 | 226 | 607 | 4 | 380 | 3.47e-91 | 287 |
| Msa0070660 | AT3G44550.2 | 39.850 | 399 | 208 | 6 | 226 | 608 | 4 | 386 | 3.84e-90 | 284 |
| Msa0070660 | AT5G22420.4 | 38.522 | 379 | 206 | 8 | 226 | 594 | 4 | 365 | 4.11e-81 | 260 |
| Msa0070660 | AT5G22420.1 | 36.702 | 376 | 211 | 8 | 229 | 594 | 43 | 401 | 8.16e-74 | 243 |
| Msa0070660 | AT5G22420.3 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 3.35e-73 | 239 |
| Msa0070660 | AT5G22420.6 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 3.35e-73 | 239 |
| Msa0070660 | AT5G22420.5 | 35.562 | 329 | 185 | 8 | 276 | 594 | 3 | 314 | 4.53e-59 | 201 |
| Msa0070660 | AT5G22420.2 | 38.182 | 275 | 160 | 6 | 324 | 594 | 27 | 295 | 6.90e-56 | 191 |
| Msa0070660 | AT5G22420.7 | 38.182 | 275 | 160 | 6 | 324 | 594 | 27 | 295 | 6.90e-56 | 191 |
Find 122 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGGTTCATAAATTT+TGG | 0.115170 | 1_2:+41296605 | None:intergenic |
| CTTCTTCCCTCTAAGAAATT+TGG | 0.132028 | 1_2:+41299359 | None:intergenic |
| CATTGCAGCTTGCTTATTCT+TGG | 0.149647 | 1_2:+41298780 | None:intergenic |
| ATTAATGGATGCTGGAAATT+TGG | 0.168524 | 1_2:-41299496 | Msa0070660:CDS |
| ACAACTCCTACTACATTAAT+TGG | 0.239196 | 1_2:-41299405 | Msa0070660:CDS |
| TAAATTTGTGGAATGACTTA+TGG | 0.255450 | 1_2:+41299707 | None:intergenic |
| TCATGCTGCAACAACATTAA+TGG | 0.260925 | 1_2:-41299511 | Msa0070660:CDS |
| TTTGTAGTCTTTGTCCTTGT+AGG | 0.272304 | 1_2:+41299639 | None:intergenic |
| AGGACAACTAACAGGTTTCT+TGG | 0.284232 | 1_2:-41297268 | Msa0070660:CDS |
| TCCAAAGTAGGAATGTATTT+TGG | 0.284403 | 1_2:+41298009 | None:intergenic |
| TTCATGATTGGAACTTGAAT+TGG | 0.293082 | 1_2:+41296780 | None:intergenic |
| ATATTCCAGTTGTTGTAATT+AGG | 0.296250 | 1_2:-41297470 | Msa0070660:CDS |
| GAGTTTAGATTTGATGTAAA+AGG | 0.298795 | 1_2:-41296162 | Msa0070660:CDS |
| ATGCAATCACCAATACTAAA+TGG | 0.306172 | 1_2:+41298063 | None:intergenic |
| ACTTTAAATGAACCATTTCC+TGG | 0.306489 | 1_2:-41297429 | Msa0070660:CDS |
| TTGATACATCTTCCCCTTTG+AGG | 0.323986 | 1_2:+41296677 | None:intergenic |
| TTACCATAGCAAAGAACTAT+TGG | 0.324080 | 1_2:+41297291 | None:intergenic |
| GTTAAGGATATTGTCCCTTA+TGG | 0.331245 | 1_2:-41299435 | Msa0070660:CDS |
| TTCTTATTGAGAAGATTCTA+AGG | 0.341945 | 1_2:-41298843 | Msa0070660:CDS |
| CTTCCACCATAAAATGTATA+TGG | 0.342594 | 1_2:+41296591 | None:intergenic |
| GGTTTCTTGGTTGATCCTAA+TGG | 0.345570 | 1_2:-41297255 | Msa0070660:CDS |
| TAACCACAGATGAAGCAATT+TGG | 0.345856 | 1_2:+41296883 | None:intergenic |
| GATATTTGTGAAACTAATCT+TGG | 0.346342 | 1_2:-41298538 | Msa0070660:CDS |
| CTCTTTCTTCATGTTTCAAC+AGG | 0.352774 | 1_2:-41298241 | Msa0070660:intron |
| CTATATAGGGCTAGAAGATA+TGG | 0.357609 | 1_2:-41297558 | Msa0070660:intron |
| CTGGGTGGATGGAAGGAAAT+AGG | 0.357880 | 1_2:-41297410 | Msa0070660:intron |
| CCTTCCATCCACCCAGGAAA+TGG | 0.359752 | 1_2:+41297417 | None:intergenic |
| CTTGGCCTAATTACAACAAC+TGG | 0.362282 | 1_2:+41297465 | None:intergenic |
| TCAGACAGATATTGTGGTTA+AGG | 0.362816 | 1_2:-41299451 | Msa0070660:CDS |
| AGCAAGCTAGTTCCTATTGT+TGG | 0.363034 | 1_2:-41298562 | Msa0070660:CDS |
| GGCATTGCCAAATTTCTTAG+AGG | 0.372074 | 1_2:-41299366 | Msa0070660:CDS |
| TCGAGGGCCATGTCGCCTTA+TGG | 0.384228 | 1_2:-41298293 | Msa0070660:CDS |
| TTGATGTAAAAGGCATAGAT+TGG | 0.386398 | 1_2:-41296152 | Msa0070660:CDS |
| TAAGGTCTTGGAAGACTAAA+GGG | 0.388547 | 1_2:+41296859 | None:intergenic |
| TATGGTAAAGGACAACTAAC+AGG | 0.389183 | 1_2:-41297276 | Msa0070660:CDS |
| TAATTTGTAGCTTATGTCAA+TGG | 0.393207 | 1_2:-41298114 | Msa0070660:intron |
| AACTAGCTTGCTCAACATAA+AGG | 0.405940 | 1_2:+41298573 | None:intergenic |
| ACCAAAATACATTCCTACTT+TGG | 0.409236 | 1_2:-41298010 | Msa0070660:CDS |
| ATGTTCATATACCAGGTCTA+AGG | 0.414217 | 1_2:-41296113 | Msa0070660:CDS |
| AACTACCTCAAAACAATGAT+TGG | 0.416676 | 1_2:-41299668 | Msa0070660:CDS |
| ACATTAATTGGACTTGATGA+TGG | 0.417607 | 1_2:-41299393 | Msa0070660:CDS |
| ACAAAGGCAAGGTAGAATAA+TGG | 0.417651 | 1_2:-41298091 | Msa0070660:CDS |
| ATTGGACTTGATGATGGAAT+TGG | 0.418242 | 1_2:-41299387 | Msa0070660:CDS |
| GAGCTAAACAACTTCATGAT+TGG | 0.426422 | 1_2:+41296768 | None:intergenic |
| TCACAAATATCTCCAACAAT+AGG | 0.426552 | 1_2:+41298550 | None:intergenic |
| AAATGATGATTGACAAATTG+AGG | 0.427865 | 1_2:-41297497 | Msa0070660:CDS |
| AGAGAAGCCTTGTAAGGTCT+TGG | 0.429057 | 1_2:+41296847 | None:intergenic |
| TCAAGTCCAATTAATGTAGT+AGG | 0.431546 | 1_2:+41299399 | None:intergenic |
| TAGTCTTCCAAGACCTTACA+AGG | 0.433178 | 1_2:-41296854 | Msa0070660:CDS |
| GTAAGGTCTTGGAAGACTAA+AGG | 0.449324 | 1_2:+41296858 | None:intergenic |
| GGAGTTGTTGGTCCACCATA+AGG | 0.451067 | 1_2:+41299420 | None:intergenic |
| ATTAATGTAGTAGGAGTTGT+TGG | 0.463242 | 1_2:+41299408 | None:intergenic |
| ACCACATCAAGGACTCCATT+AGG | 0.463331 | 1_2:+41297240 | None:intergenic |
| ATGGAAAGACCATTTAGTAT+TGG | 0.464268 | 1_2:-41298072 | Msa0070660:CDS |
| TGTTGGAACTACTAGGATGA+TGG | 0.464870 | 1_2:-41297316 | Msa0070660:intron |
| ATAGTTCTTTGCTATGGTAA+AGG | 0.472934 | 1_2:-41297288 | Msa0070660:CDS |
| TGAAGGAGATGGGTCTAGAG+AGG | 0.480617 | 1_2:-41297915 | Msa0070660:intron |
| AAGAATTCTCTGGTCACCTA+TGG | 0.482868 | 1_2:-41296740 | Msa0070660:CDS |
| AATGATGATTGACAAATTGA+GGG | 0.491248 | 1_2:-41297496 | Msa0070660:CDS |
| GCAACTGGATTTCTAGCAAA+AGG | 0.493149 | 1_2:-41299321 | Msa0070660:intron |
| AGCTCATCAGAAGAATTCTC+TGG | 0.493246 | 1_2:-41296750 | Msa0070660:CDS |
| CCATTTCCTGGGTGGATGGA+AGG | 0.504005 | 1_2:-41297417 | Msa0070660:CDS |
| AGATATGTGATGAAGGGAAG+AGG | 0.508117 | 1_2:-41296090 | Msa0070660:CDS |
| AGATGTCTTAAACAAATCCA+TGG | 0.509786 | 1_2:-41298610 | Msa0070660:CDS |
| TCTGAATAGCATCTCTCCAT+AGG | 0.511599 | 1_2:+41296724 | None:intergenic |
| ATCACCATGCATTGACTCAA+AGG | 0.512042 | 1_2:-41296808 | Msa0070660:CDS |
| GAAAAGTGGTTTGAATGCAA+TGG | 0.512049 | 1_2:-41296703 | Msa0070660:CDS |
| GCAACAACATTAATGGATGC+TGG | 0.516023 | 1_2:-41299504 | Msa0070660:CDS |
| TCTAAGGAGATATGTGATGA+AGG | 0.516837 | 1_2:-41296097 | Msa0070660:CDS |
| AATGCAATGGCATCCTCAAA+GGG | 0.518794 | 1_2:-41296690 | Msa0070660:CDS |
| GTTCGTAGAGAAGCCTTGTA+AGG | 0.524507 | 1_2:+41296841 | None:intergenic |
| GAATGCAATGGCATCCTCAA+AGG | 0.525195 | 1_2:-41296691 | Msa0070660:CDS |
| AGCTCAAAAGATGAAGGAGA+TGG | 0.526880 | 1_2:-41297926 | Msa0070660:CDS |
| CTAAGGAGATATGTGATGAA+GGG | 0.528552 | 1_2:-41296096 | Msa0070660:CDS |
| TTTACTAGCTCAAAAGATGA+AGG | 0.534828 | 1_2:-41297932 | Msa0070660:CDS |
| GATCCAATAGTTCTTTGCTA+TGG | 0.535351 | 1_2:-41297294 | Msa0070660:CDS |
| ATCTCATGTTATTGCTGATG+AGG | 0.538384 | 1_2:-41298500 | Msa0070660:CDS |
| ACATGTCTGAAGAAGAAAAG+AGG | 0.539612 | 1_2:-41296185 | Msa0070660:CDS |
| TATGTGTTCACAAAGGCAAT+GGG | 0.540053 | 1_2:-41297522 | Msa0070660:CDS |
| TGAACCATTTCCTGGGTGGA+TGG | 0.540169 | 1_2:-41297421 | Msa0070660:CDS |
| AGTGGAGCAAGCAAAGTACT+TGG | 0.541589 | 1_2:-41296628 | Msa0070660:CDS |
| AAGGATATTGTCCCTTATGG+TGG | 0.543115 | 1_2:-41299432 | Msa0070660:CDS |
| TCACCATGCATTGACTCAAA+GGG | 0.547672 | 1_2:-41296807 | Msa0070660:CDS |
| CAAGAATAAGCAAGCTGCAA+TGG | 0.549669 | 1_2:-41298779 | Msa0070660:CDS |
| GCTTGCTCAACATAAAGGCT+TGG | 0.550415 | 1_2:+41298578 | None:intergenic |
| AGAGATGCTATTCAGAAAAG+TGG | 0.551199 | 1_2:-41296717 | Msa0070660:CDS |
| CTTTAAATGAACCATTTCCT+GGG | 0.552608 | 1_2:-41297428 | Msa0070660:CDS |
| GACTGAAAGATCATCAACAT+TGG | 0.555568 | 1_2:-41299544 | Msa0070660:CDS |
| CTATGTGTTCACAAAGGCAA+TGG | 0.561810 | 1_2:-41297523 | Msa0070660:CDS |
| TAATGCAACCCTAGCAGCAA+TGG | 0.564496 | 1_2:-41296946 | Msa0070660:CDS |
| GCATTGCCAAATTTCTTAGA+GGG | 0.564711 | 1_2:-41299365 | Msa0070660:CDS |
| CATTGCCTTTGTGAACACAT+AGG | 0.565731 | 1_2:+41297524 | None:intergenic |
| CAAGAGAGAAACTTATACCA+GGG | 0.569330 | 1_2:-41298038 | Msa0070660:CDS |
| AATATAGGTACCAGCTGACA+TGG | 0.571637 | 1_2:-41296973 | Msa0070660:intron |
| AAACATTTGTAGAAAATCAG+TGG | 0.573195 | 1_2:-41296646 | Msa0070660:CDS |
| AAAGTGCTTTCAATAACACT+TGG | 0.574171 | 1_2:+41297447 | None:intergenic |
| GAGTTGTTGGTCCACCATAA+GGG | 0.577677 | 1_2:+41299421 | None:intergenic |
| ATCACTAATGTTCATATACC+AGG | 0.582853 | 1_2:-41296120 | Msa0070660:CDS |
| GCATTAACAACCATGTCAGC+TGG | 0.586114 | 1_2:+41296963 | None:intergenic |
| CATGTCTGAAGAAGAAAAGA+GGG | 0.586886 | 1_2:-41296184 | Msa0070660:CDS |
| GCAAGAGAGAAACTTATACC+AGG | 0.591737 | 1_2:-41298039 | Msa0070660:CDS |
| TAGTGTCACTTACCACATCA+AGG | 0.592306 | 1_2:+41297229 | None:intergenic |
| TCTAAGGACAGAACCTGATG+TGG | 0.593162 | 1_2:-41298827 | Msa0070660:CDS |
| CTAGCAGCAATGGCAAAACA+TGG | 0.604867 | 1_2:-41296936 | Msa0070660:CDS |
| GCTCAAAAGATGAAGGAGAT+GGG | 0.607034 | 1_2:-41297925 | Msa0070660:CDS |
| TTTCCCTTTGAGTCAATGCA+TGG | 0.614016 | 1_2:+41296804 | None:intergenic |
| TAGCTTATGTCAATGGACAA+AGG | 0.620512 | 1_2:-41298107 | Msa0070660:CDS |
| TAAATGAACCATTTCCTGGG+TGG | 0.627098 | 1_2:-41297425 | Msa0070660:CDS |
| GCGATCGCCATAAGGCGACA+TGG | 0.630978 | 1_2:+41298286 | None:intergenic |
| CTAAGGACAGAACCTGATGT+GGG | 0.632559 | 1_2:-41298826 | Msa0070660:CDS |
| ATCACATATCTCCTTAGACC+TGG | 0.633165 | 1_2:+41296102 | None:intergenic |
| TATGTCAATGGACAAAGGCA+AGG | 0.637677 | 1_2:-41298102 | Msa0070660:CDS |
| ATAGGGCTAGAAGATATGGA+TGG | 0.646805 | 1_2:-41297554 | Msa0070660:intron |
| CTATTTCCTTCCATCCACCC+AGG | 0.649175 | 1_2:+41297411 | None:intergenic |
| ATGATTGGTATATTCCTACA+AGG | 0.654405 | 1_2:-41299653 | Msa0070660:CDS |
| GCAATCGACATAAACACTCG+AGG | 0.664899 | 1_2:-41298310 | Msa0070660:CDS |
| CAATCGACATAAACACTCGA+GGG | 0.670910 | 1_2:-41298309 | Msa0070660:CDS |
| GTACCAAATTGCTTCATCTG+TGG | 0.681732 | 1_2:-41296886 | Msa0070660:CDS |
| AAGAGAGAAACTTATACCAG+GGG | 0.696750 | 1_2:-41298037 | Msa0070660:CDS |
| ATGCAATGGCATCCTCAAAG+GGG | 0.715731 | 1_2:-41296689 | Msa0070660:CDS |
| TCCTAATGGAGTCCTTGATG+TGG | 0.722130 | 1_2:-41297241 | Msa0070660:intron |
| AGATACCTATGTGTTCACAA+AGG | 0.734887 | 1_2:-41297529 | Msa0070660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTCTTTAAATGT+TGG | - | chr1_2:41296550-41296569 | Msa0070660:intron | 10.0% |
| !!! | TTTTTTCAATAAATTCAATA+AGG | - | chr1_2:41296872-41296891 | Msa0070660:CDS | 10.0% |
| !!! | TTTAATAGTTTCTTTTTTTA+GGG | + | chr1_2:41299506-41299525 | None:intergenic | 10.0% |
| !!! | TATTTTAGAAAGTAAATTTG+TGG | + | chr1_2:41296102-41296121 | None:intergenic | 15.0% |
| !! | CAAATTATCATAGAATATTT+AGG | + | chr1_2:41296512-41296531 | None:intergenic | 15.0% |
| !! | TAATAACACTATAGTAAAAA+TGG | - | chr1_2:41297581-41297600 | Msa0070660:intron | 15.0% |
| !!! | AACAAAACTTTTGTTATTTT+TGG | + | chr1_2:41297658-41297677 | None:intergenic | 15.0% |
| !!! | TTGATTTGATTTTTCTATAT+AGG | - | chr1_2:41298222-41298241 | Msa0070660:intron | 15.0% |
| !!! | TGATTTGATTTTTCTATATA+GGG | - | chr1_2:41298223-41298242 | Msa0070660:intron | 15.0% |
| !!! | GTTTAATAGTTTCTTTTTTT+AGG | + | chr1_2:41299507-41299526 | None:intergenic | 15.0% |
| !! | AAAATCTTCTCAATAAGAAT+AGG | + | chr1_2:41296899-41296918 | None:intergenic | 20.0% |
| !! | AAAAATGTATCTATTGATCA+AGG | - | chr1_2:41296991-41297010 | Msa0070660:intron | 20.0% |
| !!! | AAATATGATTTTGAAGAACA+AGG | - | chr1_2:41297823-41297842 | Msa0070660:intron | 20.0% |
| !!! | AATATGATTTTGAAGAACAA+GGG | - | chr1_2:41297824-41297843 | Msa0070660:intron | 20.0% |
| !!! | TAAGATTATTCTAGAATTTG+TGG | + | chr1_2:41297959-41297978 | None:intergenic | 20.0% |
| !! | AAGAATATTCACTTAATTGA+TGG | + | chr1_2:41298184-41298203 | None:intergenic | 20.0% |
| !!! | AAACATTTTTTTCTTCTTGT+TGG | - | chr1_2:41298461-41298480 | Msa0070660:CDS | 20.0% |
| !! | TCACATAATTCTATGAAATT+CGG | - | chr1_2:41298600-41298619 | Msa0070660:CDS | 20.0% |
| !!! | CTATTTAACTTATGAGTATA+TGG | + | chr1_2:41298724-41298743 | None:intergenic | 20.0% |
| !! | CATATACTCATAAGTTAAAT+AGG | - | chr1_2:41298722-41298741 | Msa0070660:intron | 20.0% |
| !!! | TGTATATGGTTCATAAATTT+TGG | + | chr1_2:41299192-41299211 | None:intergenic | 20.0% |
| !!! | TATGAACCATATACATTTTA+TGG | - | chr1_2:41299197-41299216 | Msa0070660:intron | 20.0% |
| !! | CTAAAAATAAACTTAAGAGA+GGG | - | chr1_2:41299465-41299484 | Msa0070660:CDS | 20.0% |
| !! | TAAAAATAAACTTAAGAGAG+GGG | - | chr1_2:41299466-41299485 | Msa0070660:CDS | 20.0% |
| ! | TAAATTTGTGGAATGACTTA+TGG | + | chr1_2:41296090-41296109 | None:intergenic | 25.0% |
| !!! | ATATACCAATCATTGTTTTG+AGG | + | chr1_2:41296134-41296153 | None:intergenic | 25.0% |
| !!! | AATTTGGTTTTGTCACAAAA+TGG | - | chr1_2:41296314-41296333 | Msa0070660:intron | 25.0% |
| ! | TAAAAATCAGACAGATATTG+TGG | - | chr1_2:41296337-41296356 | Msa0070660:intron | 25.0% |
| ! | CTCTAACTTATTGAAAATCA+TGG | + | chr1_2:41296614-41296633 | None:intergenic | 25.0% |
| ! | TTCTTATTGAGAAGATTCTA+AGG | - | chr1_2:41296951-41296970 | Msa0070660:CDS | 25.0% |
| ! | TTTGTATTTGTCAAAGTTCA+TGG | - | chr1_2:41297084-41297103 | Msa0070660:intron | 25.0% |
| ! | GATATTTGTGAAACTAATCT+TGG | - | chr1_2:41297256-41297275 | Msa0070660:CDS | 25.0% |
| !! | CTAATACAACTTTTGATGAA+AGG | - | chr1_2:41297341-41297360 | Msa0070660:intron | 25.0% |
| !! | CATGAGAATTCATCATTTTA+TGG | + | chr1_2:41297382-41297401 | None:intergenic | 25.0% |
| ! | AGTCATATATACTTATCACA+TGG | + | chr1_2:41297623-41297642 | None:intergenic | 25.0% |
| !! | TAATTTGTAGCTTATGTCAA+TGG | - | chr1_2:41297680-41297699 | Msa0070660:intron | 25.0% |
| ! | TAATTCATAATTCGATCAGA+AGG | + | chr1_2:41298060-41298079 | None:intergenic | 25.0% |
| !!! | GTTTTAACTATCTGATTTTC+AGG | + | chr1_2:41298098-41298117 | None:intergenic | 25.0% |
| ! | AAATGATGATTGACAAATTG+AGG | - | chr1_2:41298297-41298316 | Msa0070660:CDS | 25.0% |
| ! | AATGATGATTGACAAATTGA+GGG | - | chr1_2:41298298-41298317 | Msa0070660:CDS | 25.0% |
| ! | ATATTCCAGTTGTTGTAATT+AGG | - | chr1_2:41298324-41298343 | Msa0070660:intron | 25.0% |
| !!! | GTCACAAACTTTTTCTTATA+AGG | - | chr1_2:41298410-41298429 | Msa0070660:intron | 25.0% |
| !!! | TTAGTTCTATCACACAAATT+AGG | + | chr1_2:41298443-41298462 | None:intergenic | 25.0% |
| ! | AAACATTTGTAGAAAATCAG+TGG | - | chr1_2:41299148-41299167 | Msa0070660:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | - | chr1_2:41299354-41299373 | Msa0070660:CDS | 25.0% |
| ! | GCTAAAAATAAACTTAAGAG+AGG | - | chr1_2:41299464-41299483 | Msa0070660:CDS | 25.0% |
| !!! | ATAGTTTCTTTTTTTAGGGT+GGG | + | chr1_2:41299502-41299521 | None:intergenic | 25.0% |
| !!! | AATAGTTTCTTTTTTTAGGG+TGG | + | chr1_2:41299503-41299522 | None:intergenic | 25.0% |
| ! | GAGTTTAGATTTGATGTAAA+AGG | - | chr1_2:41299632-41299651 | Msa0070660:CDS | 25.0% |
| AACTACCTCAAAACAATGAT+TGG | - | chr1_2:41296126-41296145 | Msa0070660:CDS | 30.0% | |
| ATGATTGGTATATTCCTACA+AGG | - | chr1_2:41296141-41296160 | Msa0070660:CDS | 30.0% | |
| ! | ATTAATGGATGCTGGAAATT+TGG | - | chr1_2:41296298-41296317 | Msa0070660:intron | 30.0% |
| ATTAATGTAGTAGGAGTTGT+TGG | + | chr1_2:41296389-41296408 | None:intergenic | 30.0% | |
| ACAACTCCTACTACATTAAT+TGG | - | chr1_2:41296389-41296408 | Msa0070660:intron | 30.0% | |
| TCAAGTCCAATTAATGTAGT+AGG | + | chr1_2:41296398-41296417 | None:intergenic | 30.0% | |
| ACATTAATTGGACTTGATGA+TGG | - | chr1_2:41296401-41296420 | Msa0070660:intron | 30.0% | |
| ! | ATTTGAGTAGCTTGTAACTA+TGG | + | chr1_2:41296695-41296714 | None:intergenic | 30.0% |
| AGATGTCTTAAACAAATCCA+TGG | - | chr1_2:41297184-41297203 | Msa0070660:intron | 30.0% | |
| TCACAAATATCTCCAACAAT+AGG | + | chr1_2:41297247-41297266 | None:intergenic | 30.0% | |
| ATGGAAAGACCATTTAGTAT+TGG | - | chr1_2:41297722-41297741 | Msa0070660:intron | 30.0% | |
| ATGCAATCACCAATACTAAA+TGG | + | chr1_2:41297734-41297753 | None:intergenic | 30.0% | |
| !! | AAAGTAGGAATGTATTTTGG+TGG | + | chr1_2:41297785-41297804 | None:intergenic | 30.0% |
| ACCAAAATACATTCCTACTT+TGG | - | chr1_2:41297784-41297803 | Msa0070660:intron | 30.0% | |
| ! | TCCAAAGTAGGAATGTATTT+TGG | + | chr1_2:41297788-41297807 | None:intergenic | 30.0% |
| ! | TCATTTTCAATGTCCAAAGT+AGG | + | chr1_2:41297800-41297819 | None:intergenic | 30.0% |
| TTTACTAGCTCAAAAGATGA+AGG | - | chr1_2:41297862-41297881 | Msa0070660:intron | 30.0% | |
| TACAACCAGGATTCAAATTT+AGG | + | chr1_2:41298012-41298031 | None:intergenic | 30.0% | |
| !!! | CTATCTGATTTTCAGGTAAA+TGG | + | chr1_2:41298091-41298110 | None:intergenic | 30.0% |
| ! | AAAGTGCTTTCAATAACACT+TGG | + | chr1_2:41298350-41298369 | None:intergenic | 30.0% |
| ACTTTAAATGAACCATTTCC+TGG | - | chr1_2:41298365-41298384 | Msa0070660:intron | 30.0% | |
| CTTTAAATGAACCATTTCCT+GGG | - | chr1_2:41298366-41298385 | Msa0070660:intron | 30.0% | |
| TTACCATAGCAAAGAACTAT+TGG | + | chr1_2:41298506-41298525 | None:intergenic | 30.0% | |
| ! | ATAGTTCTTTGCTATGGTAA+AGG | - | chr1_2:41298506-41298525 | Msa0070660:CDS | 30.0% |
| TACATAACCAAACATTTCCT+AGG | - | chr1_2:41298635-41298654 | Msa0070660:intron | 30.0% | |
| AGTATATGGTCTATGAAGTT+CGG | + | chr1_2:41298710-41298729 | None:intergenic | 30.0% | |
| ! | ACATTACTTGCTCTGAATAT+AGG | - | chr1_2:41298806-41298825 | Msa0070660:CDS | 30.0% |
| TTCATGATTGGAACTTGAAT+TGG | + | chr1_2:41299017-41299036 | None:intergenic | 30.0% | |
| ! | GAACCATATACATTTTATGG+TGG | - | chr1_2:41299200-41299219 | Msa0070660:intron | 30.0% |
| CTTCCACCATAAAATGTATA+TGG | + | chr1_2:41299206-41299225 | None:intergenic | 30.0% | |
| !! | CATATACATTTTATGGTGGA+AGG | - | chr1_2:41299204-41299223 | Msa0070660:intron | 30.0% |
| GAAACAAATAAATGTGATGC+AGG | - | chr1_2:41299552-41299571 | Msa0070660:CDS | 30.0% | |
| ! | TTGATGTAAAAGGCATAGAT+TGG | - | chr1_2:41299642-41299661 | Msa0070660:CDS | 30.0% |
| ATCACTAATGTTCATATACC+AGG | - | chr1_2:41299674-41299693 | Msa0070660:CDS | 30.0% | |
| TTTGTAGTCTTTGTCCTTGT+AGG | + | chr1_2:41296158-41296177 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGTTTTGTCATCA+AGG | - | chr1_2:41296182-41296201 | Msa0070660:CDS | 35.0% |
| GACTGAAAGATCATCAACAT+TGG | - | chr1_2:41296250-41296269 | Msa0070660:intron | 35.0% | |
| TCATGCTGCAACAACATTAA+TGG | - | chr1_2:41296283-41296302 | Msa0070660:intron | 35.0% | |
| TCAGACAGATATTGTGGTTA+AGG | - | chr1_2:41296343-41296362 | Msa0070660:intron | 35.0% | |
| GTTAAGGATATTGTCCCTTA+TGG | - | chr1_2:41296359-41296378 | Msa0070660:intron | 35.0% | |
| !! | ATTGGACTTGATGATGGAAT+TGG | - | chr1_2:41296407-41296426 | Msa0070660:intron | 35.0% |
| GCATTGCCAAATTTCTTAGA+GGG | - | chr1_2:41296429-41296448 | Msa0070660:intron | 35.0% | |
| ! | CTTCTTCCCTCTAAGAAATT+TGG | + | chr1_2:41296438-41296457 | None:intergenic | 35.0% |
| !!! | GGGAAGAAGTTTTTTGTTAC+TGG | - | chr1_2:41296449-41296468 | Msa0070660:intron | 35.0% |
| !!! | TTTTTTGTTACTGGAGCAAC+TGG | - | chr1_2:41296458-41296477 | Msa0070660:intron | 35.0% |
| ! | AGATACATTTTTCCCACATC+AGG | + | chr1_2:41296983-41297002 | None:intergenic | 35.0% |
| !! | AACTAGCTTGCTCAACATAA+AGG | + | chr1_2:41297224-41297243 | None:intergenic | 35.0% |
| ATCTCATGTTATTGCTGATG+AGG | - | chr1_2:41297294-41297313 | Msa0070660:CDS | 35.0% | |
| CTCTTTCTTCATGTTTCAAC+AGG | - | chr1_2:41297553-41297572 | Msa0070660:CDS | 35.0% | |
| TAGCTTATGTCAATGGACAA+AGG | - | chr1_2:41297687-41297706 | Msa0070660:intron | 35.0% | |
| ACAAAGGCAAGGTAGAATAA+TGG | - | chr1_2:41297703-41297722 | Msa0070660:intron | 35.0% | |
| CAAGAGAGAAACTTATACCA+GGG | - | chr1_2:41297756-41297775 | Msa0070660:intron | 35.0% | |
| AAGAGAGAAACTTATACCAG+GGG | - | chr1_2:41297757-41297776 | Msa0070660:intron | 35.0% | |
| AGGATTCAAATTTAGGCTCA+CGG | + | chr1_2:41298005-41298024 | None:intergenic | 35.0% | |
| TACTGATGAATGATACAACC+AGG | + | chr1_2:41298025-41298044 | None:intergenic | 35.0% | |
| CTATATAGGGCTAGAAGATA+TGG | - | chr1_2:41298236-41298255 | Msa0070660:intron | 35.0% | |
| AGATACCTATGTGTTCACAA+AGG | - | chr1_2:41298265-41298284 | Msa0070660:CDS | 35.0% | |
| TATGTGTTCACAAAGGCAAT+GGG | - | chr1_2:41298272-41298291 | Msa0070660:CDS | 35.0% | |
| TTCTTCTTGTTGGAACTACT+AGG | - | chr1_2:41298471-41298490 | Msa0070660:CDS | 35.0% | |
| GATCCAATAGTTCTTTGCTA+TGG | - | chr1_2:41298500-41298519 | Msa0070660:CDS | 35.0% | |
| TATGGTAAAGGACAACTAAC+AGG | - | chr1_2:41298518-41298537 | Msa0070660:CDS | 35.0% | |
| TGTTACTCCTAGGAAATGTT+TGG | + | chr1_2:41298645-41298664 | None:intergenic | 35.0% | |
| AAGTTCGGATACATCGAAAT+GGG | + | chr1_2:41298678-41298697 | None:intergenic | 35.0% | |
| ! | GTTCGGATACATTTGAAGTT+CGG | + | chr1_2:41298693-41298712 | None:intergenic | 35.0% |
| !!! | AATTCTCGCACTTTTTTTCG+TGG | - | chr1_2:41298759-41298778 | Msa0070660:intron | 35.0% |
| TAACCACAGATGAAGCAATT+TGG | + | chr1_2:41298914-41298933 | None:intergenic | 35.0% | |
| TAAGGTCTTGGAAGACTAAA+GGG | + | chr1_2:41298938-41298957 | None:intergenic | 35.0% | |
| GAGCTAAACAACTTCATGAT+TGG | + | chr1_2:41299029-41299048 | None:intergenic | 35.0% | |
| AGAGATGCTATTCAGAAAAG+TGG | - | chr1_2:41299077-41299096 | Msa0070660:intron | 35.0% | |
| GAAAAGTGGTTTGAATGCAA+TGG | - | chr1_2:41299091-41299110 | Msa0070660:intron | 35.0% | |
| ! | TTTTAGCCTCACTAACTCTT+TGG | + | chr1_2:41299451-41299470 | None:intergenic | 35.0% |
| AAATAAACTTAAGAGAGGGG+AGG | - | chr1_2:41299469-41299488 | Msa0070660:CDS | 35.0% | |
| ACATGTCTGAAGAAGAAAAG+AGG | - | chr1_2:41299609-41299628 | Msa0070660:CDS | 35.0% | |
| CATGTCTGAAGAAGAAAAGA+GGG | - | chr1_2:41299610-41299629 | Msa0070660:CDS | 35.0% | |
| ATGTTCATATACCAGGTCTA+AGG | - | chr1_2:41299681-41299700 | Msa0070660:CDS | 35.0% | |
| TCTAAGGAGATATGTGATGA+AGG | - | chr1_2:41299697-41299716 | Msa0070660:CDS | 35.0% | |
| CTAAGGAGATATGTGATGAA+GGG | - | chr1_2:41299698-41299717 | Msa0070660:CDS | 35.0% | |
| ! | GTTGTGTTTTGTCATCAAGG+TGG | - | chr1_2:41296185-41296204 | Msa0070660:CDS | 40.0% |
| ! | GCAACAACATTAATGGATGC+TGG | - | chr1_2:41296290-41296309 | Msa0070660:intron | 40.0% |
| AAGGATATTGTCCCTTATGG+TGG | - | chr1_2:41296362-41296381 | Msa0070660:intron | 40.0% | |
| GGCATTGCCAAATTTCTTAG+AGG | - | chr1_2:41296428-41296447 | Msa0070660:intron | 40.0% | |
| !! | GCAACTGGATTTCTAGCAAA+AGG | - | chr1_2:41296473-41296492 | Msa0070660:intron | 40.0% |
| ! | CATTGCAGCTTGCTTATTCT+TGG | + | chr1_2:41297017-41297036 | None:intergenic | 40.0% |
| CAAGAATAAGCAAGCTGCAA+TGG | - | chr1_2:41297015-41297034 | Msa0070660:intron | 40.0% | |
| !! | AGGCTTGGTATGATTTTCCA+TGG | + | chr1_2:41297204-41297223 | None:intergenic | 40.0% |
| AGCAAGCTAGTTCCTATTGT+TGG | - | chr1_2:41297232-41297251 | Msa0070660:intron | 40.0% | |
| CAATCGACATAAACACTCGA+GGG | - | chr1_2:41297485-41297504 | Msa0070660:CDS | 40.0% | |
| TATGTCAATGGACAAAGGCA+AGG | - | chr1_2:41297692-41297711 | Msa0070660:intron | 40.0% | |
| GCAAGAGAGAAACTTATACC+AGG | - | chr1_2:41297755-41297774 | Msa0070660:intron | 40.0% | |
| AGCTCAAAAGATGAAGGAGA+TGG | - | chr1_2:41297868-41297887 | Msa0070660:intron | 40.0% | |
| GCTCAAAAGATGAAGGAGAT+GGG | - | chr1_2:41297869-41297888 | Msa0070660:intron | 40.0% | |
| GTGAGCCTAAATTTGAATCC+TGG | - | chr1_2:41298004-41298023 | Msa0070660:CDS | 40.0% | |
| ATAGGGCTAGAAGATATGGA+TGG | - | chr1_2:41298240-41298259 | Msa0070660:intron | 40.0% | |
| CATTGCCTTTGTGAACACAT+AGG | + | chr1_2:41298273-41298292 | None:intergenic | 40.0% | |
| CTATGTGTTCACAAAGGCAA+TGG | - | chr1_2:41298271-41298290 | Msa0070660:CDS | 40.0% | |
| CTTGGCCTAATTACAACAAC+TGG | + | chr1_2:41298332-41298351 | None:intergenic | 40.0% | |
| TAAATGAACCATTTCCTGGG+TGG | - | chr1_2:41298369-41298388 | Msa0070660:intron | 40.0% | |
| TGTTGGAACTACTAGGATGA+TGG | - | chr1_2:41298478-41298497 | Msa0070660:CDS | 40.0% | |
| AGGACAACTAACAGGTTTCT+TGG | - | chr1_2:41298526-41298545 | Msa0070660:CDS | 40.0% | |
| GGTTTCTTGGTTGATCCTAA+TGG | - | chr1_2:41298539-41298558 | Msa0070660:CDS | 40.0% | |
| !! | TAGTGTCACTTACCACATCA+AGG | + | chr1_2:41298568-41298587 | None:intergenic | 40.0% |
| !! | GAAGTATCGATGTTACTCCT+AGG | + | chr1_2:41298655-41298674 | None:intergenic | 40.0% |
| AGTTCGGATACATCGAAATG+GGG | + | chr1_2:41298677-41298696 | None:intergenic | 40.0% | |
| GAAGTTCGGATACATCGAAA+TGG | + | chr1_2:41298679-41298698 | None:intergenic | 40.0% | |
| AATATAGGTACCAGCTGACA+TGG | - | chr1_2:41298821-41298840 | Msa0070660:CDS | 40.0% | |
| ! | ATGTTTTGCCATTGCTGCTA+GGG | + | chr1_2:41298859-41298878 | None:intergenic | 40.0% |
| GTACCAAATTGCTTCATCTG+TGG | - | chr1_2:41298908-41298927 | Msa0070660:intron | 40.0% | |
| GTAAGGTCTTGGAAGACTAA+AGG | + | chr1_2:41298939-41298958 | None:intergenic | 40.0% | |
| TAGTCTTCCAAGACCTTACA+AGG | - | chr1_2:41298940-41298959 | Msa0070660:intron | 40.0% | |
| !! | ATCACCATGCATTGACTCAA+AGG | - | chr1_2:41298986-41299005 | Msa0070660:intron | 40.0% |
| !! | TCACCATGCATTGACTCAAA+GGG | - | chr1_2:41298987-41299006 | Msa0070660:intron | 40.0% |
| TTTCCCTTTGAGTCAATGCA+TGG | + | chr1_2:41298993-41299012 | None:intergenic | 40.0% | |
| AGCTCATCAGAAGAATTCTC+TGG | - | chr1_2:41299044-41299063 | Msa0070660:intron | 40.0% | |
| AAGAATTCTCTGGTCACCTA+TGG | - | chr1_2:41299054-41299073 | Msa0070660:intron | 40.0% | |
| TCTGAATAGCATCTCTCCAT+AGG | + | chr1_2:41299073-41299092 | None:intergenic | 40.0% | |
| AATGCAATGGCATCCTCAAA+GGG | - | chr1_2:41299104-41299123 | Msa0070660:intron | 40.0% | |
| TTGATACATCTTCCCCTTTG+AGG | + | chr1_2:41299120-41299139 | None:intergenic | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | - | chr1_2:41299360-41299379 | Msa0070660:CDS | 40.0% |
| ATCACATATCTCCTTAGACC+TGG | + | chr1_2:41299695-41299714 | None:intergenic | 40.0% | |
| AGATATGTGATGAAGGGAAG+AGG | - | chr1_2:41299704-41299723 | Msa0070660:CDS | 40.0% | |
| ! | GTGTTTTGTCATCAAGGTGG+AGG | - | chr1_2:41296188-41296207 | Msa0070660:CDS | 45.0% |
| ! | TTTTGTCATCAAGGTGGAGG+TGG | - | chr1_2:41296191-41296210 | Msa0070660:CDS | 45.0% |
| GAGTTGTTGGTCCACCATAA+GGG | + | chr1_2:41296376-41296395 | None:intergenic | 45.0% | |
| TCTAAGGACAGAACCTGATG+TGG | - | chr1_2:41296967-41296986 | Msa0070660:CDS | 45.0% | |
| CTAAGGACAGAACCTGATGT+GGG | - | chr1_2:41296968-41296987 | Msa0070660:CDS | 45.0% | |
| GCTTGCTCAACATAAAGGCT+TGG | + | chr1_2:41297219-41297238 | None:intergenic | 45.0% | |
| GCAATCGACATAAACACTCG+AGG | - | chr1_2:41297484-41297503 | Msa0070660:CDS | 45.0% | |
| !!! | ACTTTTTCGCGATCGCCATA+AGG | + | chr1_2:41297519-41297538 | None:intergenic | 45.0% |
| TCCTAATGGAGTCCTTGATG+TGG | - | chr1_2:41298553-41298572 | Msa0070660:CDS | 45.0% | |
| ACCACATCAAGGACTCCATT+AGG | + | chr1_2:41298557-41298576 | None:intergenic | 45.0% | |
| GCATTAACAACCATGTCAGC+TGG | + | chr1_2:41298834-41298853 | None:intergenic | 45.0% | |
| TAATGCAACCCTAGCAGCAA+TGG | - | chr1_2:41298848-41298867 | Msa0070660:intron | 45.0% | |
| ! | CATGTTTTGCCATTGCTGCT+AGG | + | chr1_2:41298860-41298879 | None:intergenic | 45.0% |
| CTAGCAGCAATGGCAAAACA+TGG | - | chr1_2:41298858-41298877 | Msa0070660:intron | 45.0% | |
| ! | AGAGAAGCCTTGTAAGGTCT+TGG | + | chr1_2:41298950-41298969 | None:intergenic | 45.0% |
| ! | GTTCGTAGAGAAGCCTTGTA+AGG | + | chr1_2:41298956-41298975 | None:intergenic | 45.0% |
| GAATGCAATGGCATCCTCAA+AGG | - | chr1_2:41299103-41299122 | Msa0070660:intron | 45.0% | |
| ATGCAATGGCATCCTCAAAG+GGG | - | chr1_2:41299105-41299124 | Msa0070660:intron | 45.0% | |
| ! | AGTGGAGCAAGCAAAGTACT+TGG | - | chr1_2:41299166-41299185 | Msa0070660:intron | 45.0% |
| GAACCACCTACTATGAAGCA+CGG | - | chr1_2:41299270-41299289 | Msa0070660:intron | 45.0% | |
| TATCCGTGCTTCATAGTAGG+TGG | + | chr1_2:41299276-41299295 | None:intergenic | 45.0% | |
| CCTACTATGAAGCACGGATA+CGG | - | chr1_2:41299276-41299295 | Msa0070660:intron | 45.0% | |
| TATGAAGCACGGACATTCCT+CGG | + | chr1_2:41299421-41299440 | None:intergenic | 45.0% | |
| !! | TTGGTGGACTCTATGAAGCA+CGG | + | chr1_2:41299432-41299451 | None:intergenic | 45.0% |
| AGTCCACCAAAGAGTTAGTG+AGG | - | chr1_2:41299442-41299461 | Msa0070660:CDS | 45.0% | |
| TAGCCTCACTAACTCTTTGG+TGG | + | chr1_2:41299448-41299467 | None:intergenic | 45.0% | |
| GGAGTTGTTGGTCCACCATA+AGG | + | chr1_2:41296377-41296396 | None:intergenic | 50.0% | |
| !!! | ATGTATTTTGGTGGCACCCC+TGG | + | chr1_2:41297776-41297795 | None:intergenic | 50.0% |
| TGAAGGAGATGGGTCTAGAG+AGG | - | chr1_2:41297879-41297898 | Msa0070660:intron | 50.0% | |
| TGAACCATTTCCTGGGTGGA+TGG | - | chr1_2:41298373-41298392 | Msa0070660:intron | 50.0% | |
| CTATTTCCTTCCATCCACCC+AGG | + | chr1_2:41298386-41298405 | None:intergenic | 50.0% | |
| CTGGGTGGATGGAAGGAAAT+AGG | - | chr1_2:41298384-41298403 | Msa0070660:intron | 50.0% | |
| CCGTATCCGTGCTTCATAGT+AGG | + | chr1_2:41299279-41299298 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr1_2:41299282-41299301 | Msa0070660:intron | 50.0% | |
| CCTTCCATCCACCCAGGAAA+TGG | + | chr1_2:41298380-41298399 | None:intergenic | 55.0% | |
| CCATTTCCTGGGTGGATGGA+AGG | - | chr1_2:41298377-41298396 | Msa0070660:intron | 55.0% | |
| TGAAGCACGGATACGGACAC+GGG | - | chr1_2:41299283-41299302 | Msa0070660:intron | 55.0% | |
| GATTAGGTGTGTCCCGGTGT+CGG | + | chr1_2:41299399-41299418 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+CGG | + | chr1_2:41299405-41299424 | None:intergenic | 55.0% |
| GCACGGACATTCCTCGGATT+AGG | + | chr1_2:41299415-41299434 | None:intergenic | 55.0% | |
| TCGAGGGCCATGTCGCCTTA+TGG | - | chr1_2:41297501-41297520 | Msa0070660:CDS | 60.0% | |
| GCGATCGCCATAAGGCGACA+TGG | + | chr1_2:41297511-41297530 | None:intergenic | 60.0% | |
| TACGGACACGGGACACGACA+CGG | - | chr1_2:41299294-41299313 | Msa0070660:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | - | chr1_2:41299383-41299402 | Msa0070660:CDS | 60.0% | |
| ACCGGGACACACCTAATCCG+AGG | - | chr1_2:41299401-41299420 | Msa0070660:CDS | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1_2:41299384-41299403 | Msa0070660:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 41296074 | 41299742 | 41296074 | ID=Msa0070660;Name=Msa0070660 |
| chr1_2 | mRNA | 41296074 | 41299742 | 41296074 | ID=Msa0070660-mRNA-1;Parent=Msa0070660;Name=Msa0070660-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|9|0|615 |
| chr1_2 | exon | 41299322 | 41299742 | 41299322 | ID=Msa0070660-mRNA-1:exon:12635;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41298762 | 41298865 | 41298762 | ID=Msa0070660-mRNA-1:exon:12634;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41298454 | 41298653 | 41298454 | ID=Msa0070660-mRNA-1:exon:12633;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41298242 | 41298342 | 41298242 | ID=Msa0070660-mRNA-1:exon:12632;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41297916 | 41298126 | 41297916 | ID=Msa0070660-mRNA-1:exon:12631;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41297411 | 41297572 | 41297411 | ID=Msa0070660-mRNA-1:exon:12630;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41297242 | 41297323 | 41297242 | ID=Msa0070660-mRNA-1:exon:12629;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41296591 | 41296988 | 41296591 | ID=Msa0070660-mRNA-1:exon:12628;Parent=Msa0070660-mRNA-1 |
| chr1_2 | exon | 41296074 | 41296242 | 41296074 | ID=Msa0070660-mRNA-1:exon:12627;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41299322 | 41299742 | 41299322 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41298762 | 41298865 | 41298762 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41298454 | 41298653 | 41298454 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41298242 | 41298342 | 41298242 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41297916 | 41298126 | 41297916 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41297411 | 41297572 | 41297411 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41297242 | 41297323 | 41297242 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41296591 | 41296988 | 41296591 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| chr1_2 | CDS | 41296074 | 41296242 | 41296074 | ID=Msa0070660-mRNA-1:cds;Parent=Msa0070660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
