Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161830 | XP_013467734.1 | 96.748 | 615 | 18 | 2 | 1 | 613 | 1 | 615 | 0.0 | 1229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161830 | sp|Q08891|FACR2_ARATH | 65.364 | 563 | 179 | 7 | 54 | 609 | 63 | 616 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161830 | A0A072VJJ5 | 96.748 | 615 | 18 | 2 | 1 | 613 | 1 | 615 | 0.0 | 1229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070660 | Msa0161830 | 0.971210 | 8.307078e-133 | -8.615850e-47 |
| Msa0115180 | Msa0161830 | 0.845691 | 3.468095e-59 | -8.615850e-47 |
| Msa0118550 | Msa0161830 | 0.963379 | 5.174246e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161830 | MtrunA17_Chr1g0176054 | 96.748 | 615 | 18 | 2 | 1 | 613 | 1 | 615 | 0.0 | 1229 |
| Msa0161830 | MtrunA17_Chr2g0321181 | 41.082 | 499 | 271 | 7 | 118 | 606 | 6 | 491 | 1.63e-132 | 397 |
| Msa0161830 | MtrunA17_Chr4g0026691 | 39.479 | 499 | 279 | 7 | 118 | 606 | 6 | 491 | 1.49e-130 | 392 |
| Msa0161830 | MtrunA17_Chr2g0321201 | 40.361 | 498 | 275 | 7 | 118 | 606 | 8 | 492 | 5.10e-130 | 390 |
| Msa0161830 | MtrunA17_Chr4g0026701 | 39.526 | 506 | 281 | 7 | 112 | 606 | 1 | 492 | 7.36e-130 | 390 |
| Msa0161830 | MtrunA17_Chr4g0026711 | 38.353 | 498 | 284 | 10 | 121 | 606 | 9 | 495 | 1.62e-118 | 361 |
| Msa0161830 | MtrunA17_Chr4g0026771 | 37.074 | 499 | 289 | 8 | 121 | 606 | 6 | 492 | 5.12e-116 | 354 |
| Msa0161830 | MtrunA17_Chr6g0465391 | 36.400 | 500 | 266 | 9 | 118 | 608 | 6 | 462 | 1.44e-103 | 321 |
| Msa0161830 | MtrunA17_Chr5g0419501 | 34.447 | 389 | 188 | 9 | 121 | 504 | 9 | 335 | 1.01e-63 | 213 |
| Msa0161830 | MtrunA17_Chr4g0026891 | 38.618 | 246 | 129 | 5 | 121 | 356 | 6 | 239 | 9.13e-51 | 177 |
| Msa0161830 | MtrunA17_Chr5g0431241 | 49.194 | 124 | 60 | 2 | 118 | 240 | 6 | 127 | 3.56e-32 | 120 |
| Msa0161830 | MtrunA17_Chr5g0431251 | 39.167 | 120 | 68 | 1 | 312 | 426 | 11 | 130 | 7.41e-28 | 109 |
| Msa0161830 | MtrunA17_Chr4g0026911 | 32.418 | 182 | 119 | 2 | 426 | 603 | 3 | 184 | 1.27e-26 | 107 |
| Msa0161830 | MtrunA17_Chr5g0431281 | 31.746 | 189 | 115 | 6 | 426 | 606 | 28 | 210 | 1.07e-22 | 96.7 |
| Msa0161830 | MtrunA17_Chr6g0465381 | 36.111 | 144 | 90 | 2 | 360 | 502 | 1 | 143 | 3.04e-20 | 88.6 |
| Msa0161830 | MtrunA17_Chr4g0026901 | 54.545 | 55 | 25 | 0 | 344 | 398 | 16 | 70 | 1.88e-17 | 77.4 |
| Msa0161830 | MtrunA17_Chr5g0431271 | 46.269 | 67 | 36 | 0 | 360 | 426 | 1 | 67 | 1.06e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0161830 | AT3G11980.1 | 65.364 | 563 | 179 | 7 | 54 | 609 | 63 | 616 | 0.0 | 736 |
| Msa0161830 | AT3G56700.2 | 46.154 | 494 | 234 | 7 | 114 | 602 | 73 | 539 | 2.24e-152 | 450 |
| Msa0161830 | AT3G56700.1 | 43.522 | 494 | 226 | 8 | 114 | 602 | 73 | 518 | 5.85e-137 | 410 |
| Msa0161830 | AT5G22500.1 | 41.948 | 503 | 259 | 11 | 119 | 606 | 6 | 490 | 3.98e-128 | 386 |
| Msa0161830 | AT3G44540.1 | 39.761 | 503 | 270 | 10 | 120 | 606 | 7 | 492 | 4.38e-126 | 381 |
| Msa0161830 | AT3G44550.1 | 40.472 | 509 | 269 | 8 | 116 | 606 | 3 | 495 | 6.88e-122 | 370 |
| Msa0161830 | AT4G33790.1 | 39.078 | 499 | 282 | 6 | 116 | 605 | 8 | 493 | 1.63e-121 | 369 |
| Msa0161830 | AT3G44560.1 | 41.352 | 503 | 263 | 10 | 121 | 606 | 8 | 495 | 5.97e-116 | 355 |
| Msa0161830 | AT5G22500.2 | 43.655 | 394 | 203 | 6 | 120 | 507 | 7 | 387 | 1.95e-109 | 335 |
| Msa0161830 | AT3G44560.3 | 40.355 | 451 | 242 | 9 | 121 | 559 | 8 | 443 | 7.77e-99 | 309 |
| Msa0161830 | AT3G44560.2 | 42.386 | 394 | 209 | 5 | 121 | 507 | 8 | 390 | 4.29e-96 | 301 |
| Msa0161830 | AT3G44540.2 | 44.795 | 317 | 155 | 5 | 120 | 428 | 7 | 311 | 3.35e-93 | 290 |
| Msa0161830 | AT3G44540.3 | 44.795 | 317 | 155 | 5 | 120 | 428 | 7 | 311 | 3.35e-93 | 290 |
| Msa0161830 | AT4G33790.2 | 39.487 | 390 | 215 | 5 | 224 | 605 | 4 | 380 | 2.96e-91 | 287 |
| Msa0161830 | AT3G44550.2 | 39.850 | 399 | 208 | 6 | 224 | 606 | 4 | 386 | 3.93e-90 | 284 |
| Msa0161830 | AT5G22420.4 | 38.522 | 379 | 206 | 8 | 224 | 592 | 4 | 365 | 3.75e-81 | 260 |
| Msa0161830 | AT5G22420.1 | 36.702 | 376 | 211 | 8 | 227 | 592 | 43 | 401 | 6.59e-74 | 243 |
| Msa0161830 | AT5G22420.3 | 37.637 | 364 | 200 | 8 | 239 | 592 | 3 | 349 | 3.27e-73 | 239 |
| Msa0161830 | AT5G22420.6 | 37.637 | 364 | 200 | 8 | 239 | 592 | 3 | 349 | 3.27e-73 | 239 |
| Msa0161830 | AT5G22420.5 | 35.562 | 329 | 185 | 8 | 274 | 592 | 3 | 314 | 4.10e-59 | 201 |
| Msa0161830 | AT5G22420.2 | 38.182 | 275 | 160 | 6 | 322 | 592 | 27 | 295 | 7.03e-56 | 191 |
| Msa0161830 | AT5G22420.7 | 38.182 | 275 | 160 | 6 | 322 | 592 | 27 | 295 | 7.03e-56 | 191 |
Find 121 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGGTTCATAAATTT+TGG | 0.115170 | 1_4:+37914474 | None:intergenic |
| CATTGCAGCTTGCTTATTCT+TGG | 0.149647 | 1_4:+37916663 | None:intergenic |
| TTTCTTCCCTCTAAGAAATT+TGG | 0.151881 | 1_4:+37917207 | None:intergenic |
| ATTAATGGATGCTGGAAATT+TGG | 0.168524 | 1_4:-37917341 | Msa0161830:CDS |
| CCAACAACTACTACATTAAT+TGG | 0.215034 | 1_4:-37917253 | Msa0161830:CDS |
| TAAATTTATGGAATGACTTA+TGG | 0.251387 | 1_4:+37917549 | None:intergenic |
| TCATGCTGCAACAACATTAA+TGG | 0.260925 | 1_4:-37917356 | Msa0161830:CDS |
| TTTGTAGTCTTTCTCCTTGT+AGG | 0.272571 | 1_4:+37917481 | None:intergenic |
| AGGACAACTAACAGGTTTCT+TGG | 0.284232 | 1_4:-37915137 | Msa0161830:CDS |
| TCCAAAGTAGGAATGTATTT+TGG | 0.284403 | 1_4:+37915877 | None:intergenic |
| TTCATGATTGGAACTTGAAT+TGG | 0.293082 | 1_4:+37914649 | None:intergenic |
| ATATTCCAGTTGTTGTAATT+AGG | 0.296250 | 1_4:-37915339 | Msa0161830:CDS |
| GAGTTTAGATTTGATGTAAA+AGG | 0.298795 | 1_4:-37914031 | Msa0161830:CDS |
| ATGCAATCACCAATACTAAA+TGG | 0.306172 | 1_4:+37915931 | None:intergenic |
| ACTTTAAATGAACCATTTCC+TGG | 0.306489 | 1_4:-37915298 | Msa0161830:CDS |
| TTGATACATCTTCCCCTTTG+AGG | 0.323986 | 1_4:+37914546 | None:intergenic |
| TTACCATAGCAAAGAACTAT+TGG | 0.324080 | 1_4:+37915160 | None:intergenic |
| GTTAAGGATATTGTCCCTTA+TGG | 0.331245 | 1_4:-37917280 | Msa0161830:CDS |
| TTCTTATTGAGAAGATTCTA+AGG | 0.341945 | 1_4:-37916726 | Msa0161830:CDS |
| CTTCCACCATAAAATGTATA+TGG | 0.342594 | 1_4:+37914460 | None:intergenic |
| GGTTTCTTGGTTGATCCTAA+TGG | 0.345570 | 1_4:-37915124 | Msa0161830:CDS |
| TAACCACAGATGAAGCAATT+TGG | 0.345856 | 1_4:+37914752 | None:intergenic |
| GATATTTGTGAAACTAATCT+TGG | 0.346342 | 1_4:-37916412 | Msa0161830:CDS |
| CTCTTTCTTCATGTTTCAAC+AGG | 0.352774 | 1_4:-37916109 | Msa0161830:intron |
| CTATATAGGGCTAGAAGATA+TGG | 0.357609 | 1_4:-37915427 | Msa0161830:intron |
| CTGGGTGGATGGAAGGAAAT+AGG | 0.357880 | 1_4:-37915279 | Msa0161830:intron |
| CCTTCCATCCACCCAGGAAA+TGG | 0.359752 | 1_4:+37915286 | None:intergenic |
| CTTGGCCTAATTACAACAAC+TGG | 0.362282 | 1_4:+37915334 | None:intergenic |
| TCAGACAGATATTGTGGTTA+AGG | 0.362816 | 1_4:-37917296 | Msa0161830:CDS |
| AGCAAGCTAGTTCCTATTGT+TGG | 0.363034 | 1_4:-37916436 | Msa0161830:CDS |
| GGCATTGCCAAATTTCTTAG+AGG | 0.372074 | 1_4:-37917214 | Msa0161830:CDS |
| TCGAGGGCCATGTCGCCTTA+TGG | 0.384228 | 1_4:-37916161 | Msa0161830:CDS |
| CCAATTAATGTAGTAGTTGT+TGG | 0.384466 | 1_4:+37917253 | None:intergenic |
| TTGATGTAAAAGGCATAGAT+TGG | 0.386398 | 1_4:-37914021 | Msa0161830:CDS |
| TAAGGTCTTGGAAGACTAAA+GGG | 0.388547 | 1_4:+37914728 | None:intergenic |
| TATGGTAAAGGACAACTAAC+AGG | 0.389183 | 1_4:-37915145 | Msa0161830:CDS |
| TAATTTGTAGCTTATGTCAA+TGG | 0.393207 | 1_4:-37915982 | Msa0161830:intron |
| GACTGAAAGATCATCATCAT+TGG | 0.403904 | 1_4:-37917389 | Msa0161830:CDS |
| AACTAGCTTGCTCAACATAA+AGG | 0.405940 | 1_4:+37916447 | None:intergenic |
| ACCAAAATACATTCCTACTT+TGG | 0.409236 | 1_4:-37915878 | Msa0161830:CDS |
| ATGTTCATATACCAGGTCTA+AGG | 0.414217 | 1_4:-37913982 | Msa0161830:CDS |
| AACTACCTCAAAACAATGAT+TGG | 0.416676 | 1_4:-37917510 | Msa0161830:CDS |
| ACATTAATTGGACTTGATGA+TGG | 0.417607 | 1_4:-37917241 | Msa0161830:CDS |
| ACAAAGGCAAGGTAGAATAA+TGG | 0.417651 | 1_4:-37915959 | Msa0161830:CDS |
| ATTGGACTTGATGATGGAAT+TGG | 0.418242 | 1_4:-37917235 | Msa0161830:CDS |
| GAGCTAAACAACTTCATGAT+TGG | 0.426422 | 1_4:+37914637 | None:intergenic |
| TCACAAATATCTCCAACAAT+AGG | 0.426552 | 1_4:+37916424 | None:intergenic |
| AAATGATGATTGACAAATTG+AGG | 0.427865 | 1_4:-37915366 | Msa0161830:CDS |
| AGAGAAGCCTTGTAAGGTCT+TGG | 0.429057 | 1_4:+37914716 | None:intergenic |
| TAGTCTTCCAAGACCTTACA+AGG | 0.433178 | 1_4:-37914723 | Msa0161830:CDS |
| GTAAGGTCTTGGAAGACTAA+AGG | 0.449324 | 1_4:+37914727 | None:intergenic |
| GTAGTTGTTGGTCCACCATA+AGG | 0.450545 | 1_4:+37917265 | None:intergenic |
| TCTTGGAACTACTAGGATGA+TGG | 0.452089 | 1_4:-37915185 | Msa0161830:intron |
| ACCACATCAAGGACTCCATT+AGG | 0.463331 | 1_4:+37915109 | None:intergenic |
| ATGGAAAGACCATTTAGTAT+TGG | 0.464268 | 1_4:-37915940 | Msa0161830:CDS |
| TCAACTGGATTTCTAGCAAA+AGG | 0.472219 | 1_4:-37917169 | Msa0161830:intron |
| ATAGTTCTTTGCTATGGTAA+AGG | 0.472934 | 1_4:-37915157 | Msa0161830:CDS |
| TGAAGGAGATGGGTCTAGAG+AGG | 0.480617 | 1_4:-37915783 | Msa0161830:intron |
| AAGAATTCTCTGGTCACCTA+TGG | 0.482868 | 1_4:-37914609 | Msa0161830:CDS |
| AATGATGATTGACAAATTGA+GGG | 0.491248 | 1_4:-37915365 | Msa0161830:CDS |
| AGCTCATCAGAAGAATTCTC+TGG | 0.493246 | 1_4:-37914619 | Msa0161830:CDS |
| CCATTTCCTGGGTGGATGGA+AGG | 0.504005 | 1_4:-37915286 | Msa0161830:CDS |
| AGATATGTGATGAAGGGAAG+AGG | 0.508117 | 1_4:-37913959 | Msa0161830:CDS |
| TCTGAATAGCATCTCTCCAT+AGG | 0.511599 | 1_4:+37914593 | None:intergenic |
| ATCACCATGCATTGACTCAA+AGG | 0.512042 | 1_4:-37914677 | Msa0161830:CDS |
| GAAAAGTGGTTTGAATGCAA+TGG | 0.512049 | 1_4:-37914572 | Msa0161830:CDS |
| GCAACAACATTAATGGATGC+TGG | 0.516023 | 1_4:-37917349 | Msa0161830:CDS |
| TCTAAGGAGATATGTGATGA+AGG | 0.516837 | 1_4:-37913966 | Msa0161830:CDS |
| AATGCAATGGCATCCTCAAA+GGG | 0.518794 | 1_4:-37914559 | Msa0161830:CDS |
| GTTCGTAGAGAAGCCTTGTA+AGG | 0.524507 | 1_4:+37914710 | None:intergenic |
| GAATGCAATGGCATCCTCAA+AGG | 0.525195 | 1_4:-37914560 | Msa0161830:CDS |
| AGCTCAAAAGATGAAGGAGA+TGG | 0.526880 | 1_4:-37915794 | Msa0161830:CDS |
| CTAAGGAGATATGTGATGAA+GGG | 0.528552 | 1_4:-37913965 | Msa0161830:CDS |
| TTTACTAGCTCAAAAGATGA+AGG | 0.534828 | 1_4:-37915800 | Msa0161830:CDS |
| GATCCAATAGTTCTTTGCTA+TGG | 0.535351 | 1_4:-37915163 | Msa0161830:CDS |
| ATCTCATGTTATTGCTGATG+AGG | 0.538384 | 1_4:-37916374 | Msa0161830:CDS |
| ACATGTCTGAAGAAGAAAAG+AGG | 0.539612 | 1_4:-37914054 | Msa0161830:CDS |
| TATGTGTTCACAAAGGCAAT+GGG | 0.540053 | 1_4:-37915391 | Msa0161830:CDS |
| TGAACCATTTCCTGGGTGGA+TGG | 0.540169 | 1_4:-37915290 | Msa0161830:CDS |
| AGTGGAGCAAGCAAAGTACT+TGG | 0.541589 | 1_4:-37914497 | Msa0161830:CDS |
| AAGGATATTGTCCCTTATGG+TGG | 0.543115 | 1_4:-37917277 | Msa0161830:CDS |
| TCACCATGCATTGACTCAAA+GGG | 0.547672 | 1_4:-37914676 | Msa0161830:CDS |
| CAAGAATAAGCAAGCTGCAA+TGG | 0.549669 | 1_4:-37916662 | Msa0161830:CDS |
| GCTTGCTCAACATAAAGGCT+TGG | 0.550415 | 1_4:+37916452 | None:intergenic |
| AGAGATGCTATTCAGAAAAG+TGG | 0.551199 | 1_4:-37914586 | Msa0161830:CDS |
| CTTTAAATGAACCATTTCCT+GGG | 0.552608 | 1_4:-37915297 | Msa0161830:CDS |
| CTATGTGTTCACAAAGGCAA+TGG | 0.561810 | 1_4:-37915392 | Msa0161830:CDS |
| AGATGCCTTAGACAAATCCA+TGG | 0.564483 | 1_4:-37916484 | Msa0161830:CDS |
| TAATGCAACCCTAGCAGCAA+TGG | 0.564496 | 1_4:-37914815 | Msa0161830:CDS |
| GCATTGCCAAATTTCTTAGA+GGG | 0.564711 | 1_4:-37917213 | Msa0161830:CDS |
| CATTGCCTTTGTGAACACAT+AGG | 0.565731 | 1_4:+37915393 | None:intergenic |
| CAAGAGAGAAACTTATACCA+GGG | 0.569330 | 1_4:-37915906 | Msa0161830:CDS |
| AATATAGGTACCAGCTGACA+TGG | 0.571637 | 1_4:-37914842 | Msa0161830:intron |
| AAACATTTGTAGAAAATCAG+TGG | 0.573195 | 1_4:-37914515 | Msa0161830:CDS |
| AAAGTGCTTTCAATAACACT+TGG | 0.574171 | 1_4:+37915316 | None:intergenic |
| ATCACTAATGTTCATATACC+AGG | 0.582853 | 1_4:-37913989 | Msa0161830:CDS |
| TAGTTGTTGGTCCACCATAA+GGG | 0.582864 | 1_4:+37917266 | None:intergenic |
| GCATTAACAACCATGTCAGC+TGG | 0.586114 | 1_4:+37914832 | None:intergenic |
| CATGTCTGAAGAAGAAAAGA+GGG | 0.586886 | 1_4:-37914053 | Msa0161830:CDS |
| GCAAGAGAGAAACTTATACC+AGG | 0.591737 | 1_4:-37915907 | Msa0161830:CDS |
| TAGTGTCACTTACCACATCA+AGG | 0.592306 | 1_4:+37915098 | None:intergenic |
| TCTAAGGACAGAACCTGATG+TGG | 0.593162 | 1_4:-37916710 | Msa0161830:CDS |
| CTAGCAGCAATGGCAAAACA+TGG | 0.604867 | 1_4:-37914805 | Msa0161830:CDS |
| GCTCAAAAGATGAAGGAGAT+GGG | 0.607034 | 1_4:-37915793 | Msa0161830:CDS |
| TTTCCCTTTGAGTCAATGCA+TGG | 0.614016 | 1_4:+37914673 | None:intergenic |
| TAGCTTATGTCAATGGACAA+AGG | 0.620512 | 1_4:-37915975 | Msa0161830:CDS |
| TAAATGAACCATTTCCTGGG+TGG | 0.627098 | 1_4:-37915294 | Msa0161830:CDS |
| GCGATCGCCATAAGGCGACA+TGG | 0.630978 | 1_4:+37916154 | None:intergenic |
| CTAAGGACAGAACCTGATGT+GGG | 0.632559 | 1_4:-37916709 | Msa0161830:CDS |
| ATCACATATCTCCTTAGACC+TGG | 0.633165 | 1_4:+37913971 | None:intergenic |
| TATGTCAATGGACAAAGGCA+AGG | 0.637677 | 1_4:-37915970 | Msa0161830:CDS |
| ATGATTGGTATATTCCTACA+AGG | 0.645637 | 1_4:-37917495 | Msa0161830:CDS |
| ATAGGGCTAGAAGATATGGA+TGG | 0.646805 | 1_4:-37915423 | Msa0161830:intron |
| CTATTTCCTTCCATCCACCC+AGG | 0.649175 | 1_4:+37915280 | None:intergenic |
| GCAATCGACATAAACACTCG+AGG | 0.664899 | 1_4:-37916178 | Msa0161830:CDS |
| CAATCGACATAAACACTCGA+GGG | 0.670910 | 1_4:-37916177 | Msa0161830:CDS |
| GTACCAAATTGCTTCATCTG+TGG | 0.681732 | 1_4:-37914755 | Msa0161830:CDS |
| AAGAGAGAAACTTATACCAG+GGG | 0.696750 | 1_4:-37915905 | Msa0161830:CDS |
| ATGCAATGGCATCCTCAAAG+GGG | 0.715731 | 1_4:-37914558 | Msa0161830:CDS |
| TCCTAATGGAGTCCTTGATG+TGG | 0.722130 | 1_4:-37915110 | Msa0161830:intron |
| AGATACCTATGTGTTCACAA+AGG | 0.734887 | 1_4:-37915398 | Msa0161830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAGAAAGTAAATTTA+TGG | + | chr1_4:37913971-37913990 | None:intergenic | 10.0% |
| !!! | TTTAATAGTTTCTTTTTTTA+GGG | + | chr1_4:37917348-37917367 | None:intergenic | 10.0% |
| !! | CAAATTATCAAAGAATATTT+AGG | + | chr1_4:37914375-37914394 | None:intergenic | 15.0% |
| !! | TTAAAAAATTCTTCAAATGT+TGG | - | chr1_4:37914418-37914437 | Msa0161830:intron | 15.0% |
| !! | TAATAACACTATAGTAAAAA+TGG | - | chr1_4:37915424-37915443 | Msa0161830:intron | 15.0% |
| !!! | AACAAAACTTTTGTTATTTT+TGG | + | chr1_4:37915501-37915520 | None:intergenic | 15.0% |
| !!! | TTGATTTGATTTTTCTATAT+AGG | - | chr1_4:37916064-37916083 | Msa0161830:intron | 15.0% |
| !!! | TGATTTGATTTTTCTATATA+GGG | - | chr1_4:37916065-37916084 | Msa0161830:intron | 15.0% |
| !!! | GTTTAATAGTTTCTTTTTTT+AGG | + | chr1_4:37917349-37917368 | None:intergenic | 15.0% |
| !! | TAAATTTATGGAATGACTTA+TGG | + | chr1_4:37913959-37913978 | None:intergenic | 20.0% |
| !! | GTTTACTATTATGAAAATCA+TGG | - | chr1_4:37914536-37914555 | Msa0161830:CDS | 20.0% |
| !! | TTTGTATTTATCAAAGTTCA+TGG | - | chr1_4:37914916-37914935 | Msa0161830:intron | 20.0% |
| !!! | AAATATGATTTTGAAGAACA+AGG | - | chr1_4:37915666-37915685 | Msa0161830:intron | 20.0% |
| !!! | AATATGATTTTGAAGAACAA+GGG | - | chr1_4:37915667-37915686 | Msa0161830:intron | 20.0% |
| !!! | TAAGATTATTCTAGAATTTG+TGG | + | chr1_4:37915801-37915820 | None:intergenic | 20.0% |
| !! | AAGAATATTCACTTAATTGA+TGG | + | chr1_4:37916026-37916045 | None:intergenic | 20.0% |
| !!! | AAACATTTTTTTCTTCTTCT+TGG | - | chr1_4:37916303-37916322 | Msa0161830:intron | 20.0% |
| !! | TCACATAATTCTATGAAATT+CGG | - | chr1_4:37916442-37916461 | Msa0161830:CDS | 20.0% |
| !!! | CTATTTAACTTATGAGTATA+TGG | + | chr1_4:37916566-37916585 | None:intergenic | 20.0% |
| !! | CATATACTCATAAGTTAAAT+AGG | - | chr1_4:37916564-37916583 | Msa0161830:intron | 20.0% |
| !!! | TGTATATGGTTCATAAATTT+TGG | + | chr1_4:37917034-37917053 | None:intergenic | 20.0% |
| !!! | TATGAACCATATACATTTTA+TGG | - | chr1_4:37917039-37917058 | Msa0161830:intron | 20.0% |
| !! | CTAAAAATAAACTTAAGAGA+GGG | - | chr1_4:37917307-37917326 | Msa0161830:CDS | 20.0% |
| !! | TAAAAATAAACTTAAGAGAG+GGG | - | chr1_4:37917308-37917327 | Msa0161830:CDS | 20.0% |
| !!! | ATATACCAATCATTGTTTTG+AGG | + | chr1_4:37914003-37914022 | None:intergenic | 25.0% |
| !!! | AATTTGGTTTTGTCACAAAA+TGG | - | chr1_4:37914180-37914199 | Msa0161830:intron | 25.0% |
| ! | TAAAAATCAGACAGATATTG+TGG | - | chr1_4:37914203-37914222 | Msa0161830:intron | 25.0% |
| ! | CTCTAACTTAATGAAAATCA+TGG | + | chr1_4:37914474-37914493 | None:intergenic | 25.0% |
| ! | TTCTTATTGAGAAGATTCTA+AGG | - | chr1_4:37914779-37914798 | Msa0161830:CDS | 25.0% |
| ! | AAAAATGTATCTCTTGATCA+AGG | - | chr1_4:37914819-37914838 | Msa0161830:CDS | 25.0% |
| ! | GATATTTGTGAAACTAATCT+TGG | - | chr1_4:37915093-37915112 | Msa0161830:intron | 25.0% |
| !! | CTAATACAACTTTTGATGAA+AGG | - | chr1_4:37915178-37915197 | Msa0161830:intron | 25.0% |
| !! | CATGAGAATTCATCATTTTA+TGG | + | chr1_4:37915219-37915238 | None:intergenic | 25.0% |
| ! | AGTCATATATACTTATCACA+TGG | + | chr1_4:37915466-37915485 | None:intergenic | 25.0% |
| !! | TAATTTGTAGCTTATGTCAA+TGG | - | chr1_4:37915523-37915542 | Msa0161830:intron | 25.0% |
| ! | TAATTCATAATTCGATCAGA+AGG | + | chr1_4:37915902-37915921 | None:intergenic | 25.0% |
| !!! | GTTTTAACTATCTGATTTTC+AGG | + | chr1_4:37915940-37915959 | None:intergenic | 25.0% |
| ! | AAATGATGATTGACAAATTG+AGG | - | chr1_4:37916139-37916158 | Msa0161830:CDS | 25.0% |
| ! | AATGATGATTGACAAATTGA+GGG | - | chr1_4:37916140-37916159 | Msa0161830:CDS | 25.0% |
| ! | ATATTCCAGTTGTTGTAATT+AGG | - | chr1_4:37916166-37916185 | Msa0161830:CDS | 25.0% |
| !!! | GTCACAAACTTTTTCTTATA+AGG | - | chr1_4:37916252-37916271 | Msa0161830:intron | 25.0% |
| !!! | TTAGTTCTATCACACAAATT+AGG | + | chr1_4:37916285-37916304 | None:intergenic | 25.0% |
| ! | AAACATTTGTAGAAAATCAG+TGG | - | chr1_4:37916990-37917009 | Msa0161830:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | - | chr1_4:37917196-37917215 | Msa0161830:CDS | 25.0% |
| ! | GCTAAAAATAAACTTAAGAG+AGG | - | chr1_4:37917306-37917325 | Msa0161830:CDS | 25.0% |
| !!! | ATAGTTTCTTTTTTTAGGGT+GGG | + | chr1_4:37917344-37917363 | None:intergenic | 25.0% |
| !!! | AATAGTTTCTTTTTTTAGGG+TGG | + | chr1_4:37917345-37917364 | None:intergenic | 25.0% |
| ! | GAGTTTAGATTTGATGTAAA+AGG | - | chr1_4:37917474-37917493 | Msa0161830:CDS | 25.0% |
| AACTACCTCAAAACAATGAT+TGG | - | chr1_4:37913995-37914014 | Msa0161830:CDS | 30.0% | |
| ATGATTGGTATATTCCTACA+AGG | - | chr1_4:37914010-37914029 | Msa0161830:CDS | 30.0% | |
| ! | ATTAATGGATGCTGGAAATT+TGG | - | chr1_4:37914164-37914183 | Msa0161830:intron | 30.0% |
| CCAATTAATGTAGTAGTTGT+TGG | + | chr1_4:37914255-37914274 | None:intergenic | 30.0% | |
| CCAACAACTACTACATTAAT+TGG | - | chr1_4:37914252-37914271 | Msa0161830:intron | 30.0% | |
| ACATTAATTGGACTTGATGA+TGG | - | chr1_4:37914264-37914283 | Msa0161830:intron | 30.0% | |
| ! | TTTCTTCCCTCTAAGAAATT+TGG | + | chr1_4:37914301-37914320 | None:intergenic | 30.0% |
| !!! | GGGAAGAAATTTTTTGTTAC+TGG | - | chr1_4:37914312-37914331 | Msa0161830:intron | 30.0% |
| !!! | TTTTTTGTTACTGGATCAAC+TGG | - | chr1_4:37914321-37914340 | Msa0161830:intron | 30.0% |
| ! | ATTTTCCATGGATTTGTCTA+AGG | + | chr1_4:37915029-37915048 | None:intergenic | 30.0% |
| TCACAAATATCTCCAACAAT+AGG | + | chr1_4:37915084-37915103 | None:intergenic | 30.0% | |
| ATGGAAAGACCATTTAGTAT+TGG | - | chr1_4:37915565-37915584 | Msa0161830:intron | 30.0% | |
| ATGCAATCACCAATACTAAA+TGG | + | chr1_4:37915577-37915596 | None:intergenic | 30.0% | |
| !! | AAAGTAGGAATGTATTTTGG+TGG | + | chr1_4:37915628-37915647 | None:intergenic | 30.0% |
| ACCAAAATACATTCCTACTT+TGG | - | chr1_4:37915627-37915646 | Msa0161830:intron | 30.0% | |
| ! | TCCAAAGTAGGAATGTATTT+TGG | + | chr1_4:37915631-37915650 | None:intergenic | 30.0% |
| ! | TCATTTTCAATGTCCAAAGT+AGG | + | chr1_4:37915643-37915662 | None:intergenic | 30.0% |
| TTTACTAGCTCAAAAGATGA+AGG | - | chr1_4:37915705-37915724 | Msa0161830:intron | 30.0% | |
| TACAACCAGGATTCAAATTT+AGG | + | chr1_4:37915854-37915873 | None:intergenic | 30.0% | |
| !!! | CTATCTGATTTTCAGGTAAA+TGG | + | chr1_4:37915933-37915952 | None:intergenic | 30.0% |
| ! | AAAGTGCTTTCAATAACACT+TGG | + | chr1_4:37916192-37916211 | None:intergenic | 30.0% |
| ACTTTAAATGAACCATTTCC+TGG | - | chr1_4:37916207-37916226 | Msa0161830:intron | 30.0% | |
| CTTTAAATGAACCATTTCCT+GGG | - | chr1_4:37916208-37916227 | Msa0161830:intron | 30.0% | |
| TTACCATAGCAAAGAACTAT+TGG | + | chr1_4:37916348-37916367 | None:intergenic | 30.0% | |
| ! | ATAGTTCTTTGCTATGGTAA+AGG | - | chr1_4:37916348-37916367 | Msa0161830:CDS | 30.0% |
| TACATAACCAAACATTTCCT+AGG | - | chr1_4:37916477-37916496 | Msa0161830:CDS | 30.0% | |
| AGTATATGGTCTATGAAGTT+CGG | + | chr1_4:37916552-37916571 | None:intergenic | 30.0% | |
| ! | ACATTACTTGCTCTGAATAT+AGG | - | chr1_4:37916648-37916667 | Msa0161830:CDS | 30.0% |
| TTCATGATTGGAACTTGAAT+TGG | + | chr1_4:37916859-37916878 | None:intergenic | 30.0% | |
| ! | GAACCATATACATTTTATGG+TGG | - | chr1_4:37917042-37917061 | Msa0161830:intron | 30.0% |
| CTTCCACCATAAAATGTATA+TGG | + | chr1_4:37917048-37917067 | None:intergenic | 30.0% | |
| !! | CATATACATTTTATGGTGGA+AGG | - | chr1_4:37917046-37917065 | Msa0161830:intron | 30.0% |
| GAAACAAATAAATGTGATGC+AGG | - | chr1_4:37917394-37917413 | Msa0161830:CDS | 30.0% | |
| ! | TTGATGTAAAAGGCATAGAT+TGG | - | chr1_4:37917484-37917503 | Msa0161830:CDS | 30.0% |
| ATCACTAATGTTCATATACC+AGG | - | chr1_4:37917516-37917535 | Msa0161830:CDS | 30.0% | |
| TTTGTAGTCTTTCTCCTTGT+AGG | + | chr1_4:37914027-37914046 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGTTTTGTCATCA+AGG | - | chr1_4:37914051-37914070 | Msa0161830:CDS | 35.0% |
| GACTGAAAGATCATCATCAT+TGG | - | chr1_4:37914116-37914135 | Msa0161830:intron | 35.0% | |
| TCATGCTGCAACAACATTAA+TGG | - | chr1_4:37914149-37914168 | Msa0161830:intron | 35.0% | |
| TCAGACAGATATTGTGGTTA+AGG | - | chr1_4:37914209-37914228 | Msa0161830:intron | 35.0% | |
| GTTAAGGATATTGTCCCTTA+TGG | - | chr1_4:37914225-37914244 | Msa0161830:intron | 35.0% | |
| !! | ATTGGACTTGATGATGGAAT+TGG | - | chr1_4:37914270-37914289 | Msa0161830:intron | 35.0% |
| GCATTGCCAAATTTCTTAGA+GGG | - | chr1_4:37914292-37914311 | Msa0161830:intron | 35.0% | |
| !! | TCAACTGGATTTCTAGCAAA+AGG | - | chr1_4:37914336-37914355 | Msa0161830:intron | 35.0% |
| TGGTTACAAGCAACTCAAAT+TGG | - | chr1_4:37914556-37914575 | Msa0161830:CDS | 35.0% | |
| ! | AGATACATTTTTCCCACATC+AGG | + | chr1_4:37914811-37914830 | None:intergenic | 35.0% |
| !! | AACTAGCTTGCTCAACATAA+AGG | + | chr1_4:37915061-37915080 | None:intergenic | 35.0% |
| ATCTCATGTTATTGCTGATG+AGG | - | chr1_4:37915131-37915150 | Msa0161830:CDS | 35.0% | |
| CTCTTTCTTCATGTTTCAAC+AGG | - | chr1_4:37915396-37915415 | Msa0161830:CDS | 35.0% | |
| TAGCTTATGTCAATGGACAA+AGG | - | chr1_4:37915530-37915549 | Msa0161830:intron | 35.0% | |
| ACAAAGGCAAGGTAGAATAA+TGG | - | chr1_4:37915546-37915565 | Msa0161830:intron | 35.0% | |
| CAAGAGAGAAACTTATACCA+GGG | - | chr1_4:37915599-37915618 | Msa0161830:intron | 35.0% | |
| AAGAGAGAAACTTATACCAG+GGG | - | chr1_4:37915600-37915619 | Msa0161830:intron | 35.0% | |
| AGGATTCAAATTTAGGCTCA+CGG | + | chr1_4:37915847-37915866 | None:intergenic | 35.0% | |
| TACTGATGAATGATACAACC+AGG | + | chr1_4:37915867-37915886 | None:intergenic | 35.0% | |
| CTATATAGGGCTAGAAGATA+TGG | - | chr1_4:37916078-37916097 | Msa0161830:intron | 35.0% | |
| AGATACCTATGTGTTCACAA+AGG | - | chr1_4:37916107-37916126 | Msa0161830:intron | 35.0% | |
| TATGTGTTCACAAAGGCAAT+GGG | - | chr1_4:37916114-37916133 | Msa0161830:CDS | 35.0% | |
| TTCTTCTTCTTGGAACTACT+AGG | - | chr1_4:37916313-37916332 | Msa0161830:intron | 35.0% | |
| GATCCAATAGTTCTTTGCTA+TGG | - | chr1_4:37916342-37916361 | Msa0161830:CDS | 35.0% | |
| TATGGTAAAGGACAACTAAC+AGG | - | chr1_4:37916360-37916379 | Msa0161830:CDS | 35.0% | |
| TGTTACTCCTAGGAAATGTT+TGG | + | chr1_4:37916487-37916506 | None:intergenic | 35.0% | |
| AAGTTCGGATACATCGAAAT+GGG | + | chr1_4:37916520-37916539 | None:intergenic | 35.0% | |
| ! | GTTCGGATACATTTGAAGTT+CGG | + | chr1_4:37916535-37916554 | None:intergenic | 35.0% |
| !!! | AATTCTCGCACTTTTTTTCG+TGG | - | chr1_4:37916601-37916620 | Msa0161830:intron | 35.0% |
| TAACCACAGATGAAGCAATT+TGG | + | chr1_4:37916756-37916775 | None:intergenic | 35.0% | |
| TAAGGTCTTGGAAGACTAAA+GGG | + | chr1_4:37916780-37916799 | None:intergenic | 35.0% | |
| GAGCTAAACAACTTCATGAT+TGG | + | chr1_4:37916871-37916890 | None:intergenic | 35.0% | |
| AGAGATGCTATTCAGAAAAG+TGG | - | chr1_4:37916919-37916938 | Msa0161830:intron | 35.0% | |
| GAAAAGTGGTTTGAATGCAA+TGG | - | chr1_4:37916933-37916952 | Msa0161830:intron | 35.0% | |
| ! | TTTTAGCCTCACTAACTCTT+TGG | + | chr1_4:37917293-37917312 | None:intergenic | 35.0% |
| AAATAAACTTAAGAGAGGGG+AGG | - | chr1_4:37917311-37917330 | Msa0161830:CDS | 35.0% | |
| ACATGTCTGAAGAAGAAAAG+AGG | - | chr1_4:37917451-37917470 | Msa0161830:CDS | 35.0% | |
| CATGTCTGAAGAAGAAAAGA+GGG | - | chr1_4:37917452-37917471 | Msa0161830:CDS | 35.0% | |
| ATGTTCATATACCAGGTCTA+AGG | - | chr1_4:37917523-37917542 | Msa0161830:CDS | 35.0% | |
| TCTAAGGAGATATGTGATGA+AGG | - | chr1_4:37917539-37917558 | Msa0161830:CDS | 35.0% | |
| CTAAGGAGATATGTGATGAA+GGG | - | chr1_4:37917540-37917559 | Msa0161830:CDS | 35.0% | |
| ! | GTTGTGTTTTGTCATCAAGG+TGG | - | chr1_4:37914054-37914073 | Msa0161830:CDS | 40.0% |
| ! | GCAACAACATTAATGGATGC+TGG | - | chr1_4:37914156-37914175 | Msa0161830:intron | 40.0% |
| AAGGATATTGTCCCTTATGG+TGG | - | chr1_4:37914228-37914247 | Msa0161830:intron | 40.0% | |
| TAGTTGTTGGTCCACCATAA+GGG | + | chr1_4:37914242-37914261 | None:intergenic | 40.0% | |
| GGCATTGCCAAATTTCTTAG+AGG | - | chr1_4:37914291-37914310 | Msa0161830:intron | 40.0% | |
| ! | CATTGCAGCTTGCTTATTCT+TGG | + | chr1_4:37914845-37914864 | None:intergenic | 40.0% |
| CAAGAATAAGCAAGCTGCAA+TGG | - | chr1_4:37914843-37914862 | Msa0161830:intron | 40.0% | |
| AGATGCCTTAGACAAATCCA+TGG | - | chr1_4:37915021-37915040 | Msa0161830:intron | 40.0% | |
| !! | AGGCTTGGTATGATTTTCCA+TGG | + | chr1_4:37915041-37915060 | None:intergenic | 40.0% |
| AGCAAGCTAGTTCCTATTGT+TGG | - | chr1_4:37915069-37915088 | Msa0161830:intron | 40.0% | |
| CAATCGACATAAACACTCGA+GGG | - | chr1_4:37915328-37915347 | Msa0161830:CDS | 40.0% | |
| TATGTCAATGGACAAAGGCA+AGG | - | chr1_4:37915535-37915554 | Msa0161830:intron | 40.0% | |
| GCAAGAGAGAAACTTATACC+AGG | - | chr1_4:37915598-37915617 | Msa0161830:intron | 40.0% | |
| AGCTCAAAAGATGAAGGAGA+TGG | - | chr1_4:37915711-37915730 | Msa0161830:intron | 40.0% | |
| GCTCAAAAGATGAAGGAGAT+GGG | - | chr1_4:37915712-37915731 | Msa0161830:intron | 40.0% | |
| GTGAGCCTAAATTTGAATCC+TGG | - | chr1_4:37915846-37915865 | Msa0161830:CDS | 40.0% | |
| ATAGGGCTAGAAGATATGGA+TGG | - | chr1_4:37916082-37916101 | Msa0161830:intron | 40.0% | |
| CATTGCCTTTGTGAACACAT+AGG | + | chr1_4:37916115-37916134 | None:intergenic | 40.0% | |
| CTATGTGTTCACAAAGGCAA+TGG | - | chr1_4:37916113-37916132 | Msa0161830:CDS | 40.0% | |
| CTTGGCCTAATTACAACAAC+TGG | + | chr1_4:37916174-37916193 | None:intergenic | 40.0% | |
| TAAATGAACCATTTCCTGGG+TGG | - | chr1_4:37916211-37916230 | Msa0161830:intron | 40.0% | |
| TCTTGGAACTACTAGGATGA+TGG | - | chr1_4:37916320-37916339 | Msa0161830:intron | 40.0% | |
| AGGACAACTAACAGGTTTCT+TGG | - | chr1_4:37916368-37916387 | Msa0161830:CDS | 40.0% | |
| GGTTTCTTGGTTGATCCTAA+TGG | - | chr1_4:37916381-37916400 | Msa0161830:CDS | 40.0% | |
| !! | TAGTGTCACTTACCACATCA+AGG | + | chr1_4:37916410-37916429 | None:intergenic | 40.0% |
| !! | GAAGTATCGATGTTACTCCT+AGG | + | chr1_4:37916497-37916516 | None:intergenic | 40.0% |
| AGTTCGGATACATCGAAATG+GGG | + | chr1_4:37916519-37916538 | None:intergenic | 40.0% | |
| GAAGTTCGGATACATCGAAA+TGG | + | chr1_4:37916521-37916540 | None:intergenic | 40.0% | |
| AATATAGGTACCAGCTGACA+TGG | - | chr1_4:37916663-37916682 | Msa0161830:CDS | 40.0% | |
| ! | ATGTTTTGCCATTGCTGCTA+GGG | + | chr1_4:37916701-37916720 | None:intergenic | 40.0% |
| GTACCAAATTGCTTCATCTG+TGG | - | chr1_4:37916750-37916769 | Msa0161830:intron | 40.0% | |
| GTAAGGTCTTGGAAGACTAA+AGG | + | chr1_4:37916781-37916800 | None:intergenic | 40.0% | |
| TAGTCTTCCAAGACCTTACA+AGG | - | chr1_4:37916782-37916801 | Msa0161830:intron | 40.0% | |
| !! | ATCACCATGCATTGACTCAA+AGG | - | chr1_4:37916828-37916847 | Msa0161830:intron | 40.0% |
| !! | TCACCATGCATTGACTCAAA+GGG | - | chr1_4:37916829-37916848 | Msa0161830:intron | 40.0% |
| TTTCCCTTTGAGTCAATGCA+TGG | + | chr1_4:37916835-37916854 | None:intergenic | 40.0% | |
| AGCTCATCAGAAGAATTCTC+TGG | - | chr1_4:37916886-37916905 | Msa0161830:intron | 40.0% | |
| AAGAATTCTCTGGTCACCTA+TGG | - | chr1_4:37916896-37916915 | Msa0161830:intron | 40.0% | |
| TCTGAATAGCATCTCTCCAT+AGG | + | chr1_4:37916915-37916934 | None:intergenic | 40.0% | |
| AATGCAATGGCATCCTCAAA+GGG | - | chr1_4:37916946-37916965 | Msa0161830:intron | 40.0% | |
| TTGATACATCTTCCCCTTTG+AGG | + | chr1_4:37916962-37916981 | None:intergenic | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | - | chr1_4:37917202-37917221 | Msa0161830:CDS | 40.0% |
| ATCACATATCTCCTTAGACC+TGG | + | chr1_4:37917537-37917556 | None:intergenic | 40.0% | |
| AGATATGTGATGAAGGGAAG+AGG | - | chr1_4:37917546-37917565 | Msa0161830:CDS | 40.0% | |
| ! | GTGTTTTGTCATCAAGGTGG+AGG | - | chr1_4:37914057-37914076 | Msa0161830:CDS | 45.0% |
| ! | TTTTGTCATCAAGGTGGAGG+TGG | - | chr1_4:37914060-37914079 | Msa0161830:CDS | 45.0% |
| GTAGTTGTTGGTCCACCATA+AGG | + | chr1_4:37914243-37914262 | None:intergenic | 45.0% | |
| TCTAAGGACAGAACCTGATG+TGG | - | chr1_4:37914795-37914814 | Msa0161830:CDS | 45.0% | |
| CTAAGGACAGAACCTGATGT+GGG | - | chr1_4:37914796-37914815 | Msa0161830:CDS | 45.0% | |
| GCTTGCTCAACATAAAGGCT+TGG | + | chr1_4:37915056-37915075 | None:intergenic | 45.0% | |
| GCAATCGACATAAACACTCG+AGG | - | chr1_4:37915327-37915346 | Msa0161830:CDS | 45.0% | |
| !!! | ACTTTTTCGCGATCGCCATA+AGG | + | chr1_4:37915362-37915381 | None:intergenic | 45.0% |
| TCCTAATGGAGTCCTTGATG+TGG | - | chr1_4:37916395-37916414 | Msa0161830:CDS | 45.0% | |
| ACCACATCAAGGACTCCATT+AGG | + | chr1_4:37916399-37916418 | None:intergenic | 45.0% | |
| GCATTAACAACCATGTCAGC+TGG | + | chr1_4:37916676-37916695 | None:intergenic | 45.0% | |
| TAATGCAACCCTAGCAGCAA+TGG | - | chr1_4:37916690-37916709 | Msa0161830:CDS | 45.0% | |
| ! | CATGTTTTGCCATTGCTGCT+AGG | + | chr1_4:37916702-37916721 | None:intergenic | 45.0% |
| CTAGCAGCAATGGCAAAACA+TGG | - | chr1_4:37916700-37916719 | Msa0161830:CDS | 45.0% | |
| ! | AGAGAAGCCTTGTAAGGTCT+TGG | + | chr1_4:37916792-37916811 | None:intergenic | 45.0% |
| ! | GTTCGTAGAGAAGCCTTGTA+AGG | + | chr1_4:37916798-37916817 | None:intergenic | 45.0% |
| GAATGCAATGGCATCCTCAA+AGG | - | chr1_4:37916945-37916964 | Msa0161830:intron | 45.0% | |
| ATGCAATGGCATCCTCAAAG+GGG | - | chr1_4:37916947-37916966 | Msa0161830:intron | 45.0% | |
| ! | AGTGGAGCAAGCAAAGTACT+TGG | - | chr1_4:37917008-37917027 | Msa0161830:intron | 45.0% |
| GAACCACCTACTATGAAGCA+CGG | - | chr1_4:37917112-37917131 | Msa0161830:intron | 45.0% | |
| TATCCGTGCTTCATAGTAGG+TGG | + | chr1_4:37917118-37917137 | None:intergenic | 45.0% | |
| CCTACTATGAAGCACGGATA+CGG | - | chr1_4:37917118-37917137 | Msa0161830:intron | 45.0% | |
| TATGAAGCACGGACATTCCT+CGG | + | chr1_4:37917263-37917282 | None:intergenic | 45.0% | |
| !! | TTGGTGGACTCTATGAAGCA+CGG | + | chr1_4:37917274-37917293 | None:intergenic | 45.0% |
| AGTCCACCAAAGAGTTAGTG+AGG | - | chr1_4:37917284-37917303 | Msa0161830:CDS | 45.0% | |
| TAGCCTCACTAACTCTTTGG+TGG | + | chr1_4:37917290-37917309 | None:intergenic | 45.0% | |
| !!! | ATGTATTTTGGTGGCACCCC+TGG | + | chr1_4:37915619-37915638 | None:intergenic | 50.0% |
| TGAAGGAGATGGGTCTAGAG+AGG | - | chr1_4:37915722-37915741 | Msa0161830:intron | 50.0% | |
| TGAACCATTTCCTGGGTGGA+TGG | - | chr1_4:37916215-37916234 | Msa0161830:intron | 50.0% | |
| CTATTTCCTTCCATCCACCC+AGG | + | chr1_4:37916228-37916247 | None:intergenic | 50.0% | |
| CTGGGTGGATGGAAGGAAAT+AGG | - | chr1_4:37916226-37916245 | Msa0161830:intron | 50.0% | |
| CCGTATCCGTGCTTCATAGT+AGG | + | chr1_4:37917121-37917140 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr1_4:37917124-37917143 | Msa0161830:intron | 50.0% | |
| CCTTCCATCCACCCAGGAAA+TGG | + | chr1_4:37916222-37916241 | None:intergenic | 55.0% | |
| CCATTTCCTGGGTGGATGGA+AGG | - | chr1_4:37916219-37916238 | Msa0161830:intron | 55.0% | |
| TGAAGCACGGATACGGACAC+GGG | - | chr1_4:37917125-37917144 | Msa0161830:intron | 55.0% | |
| ACACGACATGTGTCCGACAC+CGG | - | chr1_4:37917225-37917244 | Msa0161830:CDS | 55.0% | |
| GATTAGGTGTGTCCCGGTGT+CGG | + | chr1_4:37917241-37917260 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+CGG | + | chr1_4:37917247-37917266 | None:intergenic | 55.0% |
| GCACGGACATTCCTCGGATT+AGG | + | chr1_4:37917257-37917276 | None:intergenic | 55.0% | |
| TCGAGGGCCATGTCGCCTTA+TGG | - | chr1_4:37915344-37915363 | Msa0161830:CDS | 60.0% | |
| GCGATCGCCATAAGGCGACA+TGG | + | chr1_4:37915354-37915373 | None:intergenic | 60.0% | |
| TACGGACACGGGACACGACA+CGG | - | chr1_4:37917136-37917155 | Msa0161830:intron | 60.0% | |
| CACGACATGTGTCCGACACC+GGG | - | chr1_4:37917226-37917245 | Msa0161830:CDS | 60.0% | |
| ACCGGGACACACCTAATCCG+AGG | - | chr1_4:37917243-37917262 | Msa0161830:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 37913943 | 37917584 | 37913943 | ID=Msa0161830;Name=Msa0161830 |
| chr1_4 | mRNA | 37913943 | 37917584 | 37913943 | ID=Msa0161830-mRNA-1;Parent=Msa0161830;Name=Msa0161830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|613 |
| chr1_4 | exon | 37917170 | 37917584 | 37917170 | ID=Msa0161830-mRNA-1:exon:11069;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37916645 | 37916748 | 37916645 | ID=Msa0161830-mRNA-1:exon:11068;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37916328 | 37916527 | 37916328 | ID=Msa0161830-mRNA-1:exon:11067;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37916110 | 37916210 | 37916110 | ID=Msa0161830-mRNA-1:exon:11066;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37915784 | 37915994 | 37915784 | ID=Msa0161830-mRNA-1:exon:11065;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37915280 | 37915441 | 37915280 | ID=Msa0161830-mRNA-1:exon:11064;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37915111 | 37915192 | 37915111 | ID=Msa0161830-mRNA-1:exon:11063;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37914460 | 37914857 | 37914460 | ID=Msa0161830-mRNA-1:exon:11062;Parent=Msa0161830-mRNA-1 |
| chr1_4 | exon | 37913943 | 37914111 | 37913943 | ID=Msa0161830-mRNA-1:exon:11061;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37917170 | 37917584 | 37917170 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37916645 | 37916748 | 37916645 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37916328 | 37916527 | 37916328 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37916110 | 37916210 | 37916110 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37915784 | 37915994 | 37915784 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37915280 | 37915441 | 37915280 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37915111 | 37915192 | 37915111 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37914460 | 37914857 | 37914460 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| chr1_4 | CDS | 37913943 | 37914111 | 37913943 | ID=Msa0161830-mRNA-1:cds;Parent=Msa0161830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
