Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118550 | sp|Q08891|FACR2_ARATH | 64.623 | 571 | 185 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118550 | A0A072VJJ5 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1235 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0070660 | Msa0118550 | 0.990593 | 2.236990e-183 | -8.615850e-47 |
| Msa0115180 | Msa0118550 | 0.850056 | 2.173293e-60 | -8.615850e-47 |
| Msa0118550 | Msa0161830 | 0.963379 | 5.174246e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118550 | MtrunA17_Chr1g0176054 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1235 |
| Msa0118550 | MtrunA17_Chr2g0321181 | 41.483 | 499 | 269 | 7 | 120 | 608 | 6 | 491 | 3.12e-133 | 399 |
| Msa0118550 | MtrunA17_Chr4g0026691 | 39.880 | 499 | 277 | 7 | 120 | 608 | 6 | 491 | 1.40e-131 | 394 |
| Msa0118550 | MtrunA17_Chr4g0026701 | 39.921 | 506 | 279 | 7 | 114 | 608 | 1 | 492 | 6.40e-131 | 393 |
| Msa0118550 | MtrunA17_Chr2g0321201 | 40.562 | 498 | 274 | 7 | 120 | 608 | 8 | 492 | 1.65e-130 | 392 |
| Msa0118550 | MtrunA17_Chr4g0026711 | 38.153 | 498 | 285 | 10 | 123 | 608 | 9 | 495 | 9.80e-118 | 359 |
| Msa0118550 | MtrunA17_Chr4g0026771 | 37.074 | 499 | 289 | 8 | 123 | 608 | 6 | 492 | 8.25e-116 | 354 |
| Msa0118550 | MtrunA17_Chr6g0465391 | 36.200 | 500 | 267 | 9 | 120 | 610 | 6 | 462 | 3.67e-103 | 320 |
| Msa0118550 | MtrunA17_Chr5g0419501 | 34.190 | 389 | 189 | 9 | 123 | 506 | 9 | 335 | 5.30e-63 | 211 |
| Msa0118550 | MtrunA17_Chr4g0026891 | 38.618 | 246 | 129 | 5 | 123 | 358 | 6 | 239 | 1.46e-50 | 176 |
| Msa0118550 | MtrunA17_Chr5g0431241 | 48.387 | 124 | 61 | 2 | 120 | 242 | 6 | 127 | 1.67e-31 | 119 |
| Msa0118550 | MtrunA17_Chr5g0431251 | 39.167 | 120 | 68 | 1 | 314 | 428 | 11 | 130 | 8.14e-28 | 109 |
| Msa0118550 | MtrunA17_Chr4g0026911 | 32.418 | 182 | 119 | 2 | 428 | 605 | 3 | 184 | 1.20e-26 | 107 |
| Msa0118550 | MtrunA17_Chr5g0431281 | 31.658 | 199 | 118 | 7 | 418 | 608 | 22 | 210 | 1.13e-22 | 96.7 |
| Msa0118550 | MtrunA17_Chr6g0465381 | 36.111 | 144 | 90 | 2 | 362 | 504 | 1 | 143 | 2.78e-20 | 88.6 |
| Msa0118550 | MtrunA17_Chr4g0026901 | 54.545 | 55 | 25 | 0 | 346 | 400 | 16 | 70 | 2.09e-17 | 77.4 |
| Msa0118550 | MtrunA17_Chr5g0431271 | 46.269 | 67 | 36 | 0 | 362 | 428 | 1 | 67 | 1.06e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0118550 | AT3G11980.1 | 64.623 | 571 | 185 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Msa0118550 | AT3G56700.2 | 46.559 | 494 | 232 | 7 | 116 | 604 | 73 | 539 | 2.23e-153 | 453 |
| Msa0118550 | AT3G56700.1 | 43.927 | 494 | 224 | 8 | 116 | 604 | 73 | 518 | 7.35e-138 | 412 |
| Msa0118550 | AT5G22500.1 | 41.833 | 502 | 261 | 10 | 121 | 608 | 6 | 490 | 4.52e-128 | 386 |
| Msa0118550 | AT3G44540.1 | 39.960 | 503 | 269 | 10 | 122 | 608 | 7 | 492 | 8.66e-127 | 383 |
| Msa0118550 | AT4G33790.1 | 39.479 | 499 | 280 | 6 | 118 | 607 | 8 | 493 | 4.77e-122 | 370 |
| Msa0118550 | AT3G44550.1 | 40.472 | 509 | 269 | 8 | 118 | 608 | 3 | 495 | 1.04e-121 | 370 |
| Msa0118550 | AT3G44560.1 | 41.352 | 503 | 263 | 10 | 123 | 608 | 8 | 495 | 9.53e-116 | 354 |
| Msa0118550 | AT5G22500.2 | 43.655 | 394 | 203 | 6 | 122 | 509 | 7 | 387 | 2.16e-109 | 335 |
| Msa0118550 | AT3G44560.3 | 40.355 | 451 | 242 | 9 | 123 | 561 | 8 | 443 | 9.64e-99 | 309 |
| Msa0118550 | AT3G44560.2 | 42.386 | 394 | 209 | 5 | 123 | 509 | 8 | 390 | 7.33e-96 | 300 |
| Msa0118550 | AT3G44540.2 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 9.25e-94 | 291 |
| Msa0118550 | AT3G44540.3 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 9.25e-94 | 291 |
| Msa0118550 | AT4G33790.2 | 39.487 | 390 | 215 | 5 | 226 | 607 | 4 | 380 | 3.47e-91 | 287 |
| Msa0118550 | AT3G44550.2 | 39.850 | 399 | 208 | 6 | 226 | 608 | 4 | 386 | 3.84e-90 | 284 |
| Msa0118550 | AT5G22420.4 | 38.522 | 379 | 206 | 8 | 226 | 594 | 4 | 365 | 4.11e-81 | 260 |
| Msa0118550 | AT5G22420.1 | 36.702 | 376 | 211 | 8 | 229 | 594 | 43 | 401 | 8.16e-74 | 243 |
| Msa0118550 | AT5G22420.3 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 3.35e-73 | 239 |
| Msa0118550 | AT5G22420.6 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 3.35e-73 | 239 |
| Msa0118550 | AT5G22420.5 | 35.562 | 329 | 185 | 8 | 276 | 594 | 3 | 314 | 4.53e-59 | 201 |
| Msa0118550 | AT5G22420.2 | 38.182 | 275 | 160 | 6 | 324 | 594 | 27 | 295 | 6.90e-56 | 191 |
| Msa0118550 | AT5G22420.7 | 38.182 | 275 | 160 | 6 | 324 | 594 | 27 | 295 | 6.90e-56 | 191 |
Find 122 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGGTTCATAAATTT+TGG | 0.115170 | 1_3:+41412337 | None:intergenic |
| CTTCTTCCCTCTAAGAAATT+TGG | 0.132028 | 1_3:+41415091 | None:intergenic |
| CATTGCAGCTTGCTTATTCT+TGG | 0.149647 | 1_3:+41414512 | None:intergenic |
| ATTAATGGATGCTGGAAATT+TGG | 0.168524 | 1_3:-41415228 | Msa0118550:CDS |
| ACAACTCCTACTACATTAAT+TGG | 0.239196 | 1_3:-41415137 | Msa0118550:CDS |
| TAAATTTGTGGAATGACTTA+TGG | 0.255450 | 1_3:+41415439 | None:intergenic |
| TCATGCTGCAACAACATTAA+TGG | 0.260925 | 1_3:-41415243 | Msa0118550:CDS |
| TTTGTAGTCTTTGTCCTTGT+AGG | 0.272304 | 1_3:+41415371 | None:intergenic |
| AGGACAACTAACAGGTTTCT+TGG | 0.284232 | 1_3:-41413000 | Msa0118550:CDS |
| TCCAAAGTAGGAATGTATTT+TGG | 0.284403 | 1_3:+41413741 | None:intergenic |
| TTCATGATTGGAACTTGAAT+TGG | 0.293082 | 1_3:+41412512 | None:intergenic |
| ATATTCCAGTTGTTGTAATT+AGG | 0.296250 | 1_3:-41413202 | Msa0118550:CDS |
| GAGTTTAGATTTGATGTAAA+AGG | 0.298795 | 1_3:-41411894 | Msa0118550:CDS |
| ATGCAATCACCAATACTAAA+TGG | 0.306172 | 1_3:+41413795 | None:intergenic |
| ACTTTAAATGAACCATTTCC+TGG | 0.306489 | 1_3:-41413161 | Msa0118550:CDS |
| TTGATACATCTTCCCCTTTG+AGG | 0.323986 | 1_3:+41412409 | None:intergenic |
| TTACCATAGCAAAGAACTAT+TGG | 0.324080 | 1_3:+41413023 | None:intergenic |
| GTTAAGGATATTGTCCCTTA+TGG | 0.331245 | 1_3:-41415167 | Msa0118550:CDS |
| TTCTTATTGAGAAGATTCTA+AGG | 0.341945 | 1_3:-41414575 | Msa0118550:CDS |
| CTTCCACCATAAAATGTATA+TGG | 0.342594 | 1_3:+41412323 | None:intergenic |
| GGTTTCTTGGTTGATCCTAA+TGG | 0.345570 | 1_3:-41412987 | Msa0118550:CDS |
| TAACCACAGATGAAGCAATT+TGG | 0.345856 | 1_3:+41412615 | None:intergenic |
| GATATTTGTGAAACTAATCT+TGG | 0.346342 | 1_3:-41414270 | Msa0118550:CDS |
| CTCTTTCTTCATGTTTCAAC+AGG | 0.352774 | 1_3:-41413973 | Msa0118550:intron |
| CTATATAGGGCTAGAAGATA+TGG | 0.357609 | 1_3:-41413290 | Msa0118550:intron |
| CTGGGTGGATGGAAGGAAAT+AGG | 0.357880 | 1_3:-41413142 | Msa0118550:intron |
| CCTTCCATCCACCCAGGAAA+TGG | 0.359752 | 1_3:+41413149 | None:intergenic |
| CTTGGCCTAATTACAACAAC+TGG | 0.362282 | 1_3:+41413197 | None:intergenic |
| TCAGACAGATATTGTGGTTA+AGG | 0.362816 | 1_3:-41415183 | Msa0118550:CDS |
| AGCAAGCTAGTTCCTATTGT+TGG | 0.363034 | 1_3:-41414294 | Msa0118550:CDS |
| GGCATTGCCAAATTTCTTAG+AGG | 0.372074 | 1_3:-41415098 | Msa0118550:CDS |
| TCGAGGGCCATGTCGCCTTA+TGG | 0.384228 | 1_3:-41414025 | Msa0118550:CDS |
| TTGATGTAAAAGGCATAGAT+TGG | 0.386398 | 1_3:-41411884 | Msa0118550:CDS |
| TAAGGTCTTGGAAGACTAAA+GGG | 0.388547 | 1_3:+41412591 | None:intergenic |
| TATGGTAAAGGACAACTAAC+AGG | 0.389183 | 1_3:-41413008 | Msa0118550:CDS |
| TAATTTGTAGCTTATGTCAA+TGG | 0.393207 | 1_3:-41413846 | Msa0118550:intron |
| AACTAGCTTGCTCAACATAA+AGG | 0.405940 | 1_3:+41414305 | None:intergenic |
| ACCAAAATACATTCCTACTT+TGG | 0.409236 | 1_3:-41413742 | Msa0118550:CDS |
| ATGTTCATATACCAGGTCTA+AGG | 0.414217 | 1_3:-41411845 | Msa0118550:CDS |
| AACTACCTCAAAACAATGAT+TGG | 0.416676 | 1_3:-41415400 | Msa0118550:CDS |
| ACATTAATTGGACTTGATGA+TGG | 0.417607 | 1_3:-41415125 | Msa0118550:CDS |
| ACAAAGGCAAGGTAGAATAA+TGG | 0.417651 | 1_3:-41413823 | Msa0118550:CDS |
| ATTGGACTTGATGATGGAAT+TGG | 0.418242 | 1_3:-41415119 | Msa0118550:CDS |
| GAGCTAAACAACTTCATGAT+TGG | 0.426422 | 1_3:+41412500 | None:intergenic |
| TCACAAATATCTCCAACAAT+AGG | 0.426552 | 1_3:+41414282 | None:intergenic |
| AAATGATGATTGACAAATTG+AGG | 0.427865 | 1_3:-41413229 | Msa0118550:CDS |
| AGAGAAGCCTTGTAAGGTCT+TGG | 0.429057 | 1_3:+41412579 | None:intergenic |
| TCAAGTCCAATTAATGTAGT+AGG | 0.431546 | 1_3:+41415131 | None:intergenic |
| TAGTCTTCCAAGACCTTACA+AGG | 0.433178 | 1_3:-41412586 | Msa0118550:CDS |
| GTAAGGTCTTGGAAGACTAA+AGG | 0.449324 | 1_3:+41412590 | None:intergenic |
| GGAGTTGTTGGTCCACCATA+AGG | 0.451067 | 1_3:+41415152 | None:intergenic |
| ATTAATGTAGTAGGAGTTGT+TGG | 0.463242 | 1_3:+41415140 | None:intergenic |
| ACCACATCAAGGACTCCATT+AGG | 0.463331 | 1_3:+41412972 | None:intergenic |
| ATGGAAAGACCATTTAGTAT+TGG | 0.464268 | 1_3:-41413804 | Msa0118550:CDS |
| TGTTGGAACTACTAGGATGA+TGG | 0.464870 | 1_3:-41413048 | Msa0118550:intron |
| ATAGTTCTTTGCTATGGTAA+AGG | 0.472934 | 1_3:-41413020 | Msa0118550:CDS |
| TGAAGGAGATGGGTCTAGAG+AGG | 0.480617 | 1_3:-41413647 | Msa0118550:intron |
| AAGAATTCTCTGGTCACCTA+TGG | 0.482868 | 1_3:-41412472 | Msa0118550:CDS |
| AATGATGATTGACAAATTGA+GGG | 0.491248 | 1_3:-41413228 | Msa0118550:CDS |
| GCAACTGGATTTCTAGCAAA+AGG | 0.493149 | 1_3:-41415053 | Msa0118550:intron |
| AGCTCATCAGAAGAATTCTC+TGG | 0.493246 | 1_3:-41412482 | Msa0118550:CDS |
| CCATTTCCTGGGTGGATGGA+AGG | 0.504005 | 1_3:-41413149 | Msa0118550:CDS |
| AGATATGTGATGAAGGGAAG+AGG | 0.508117 | 1_3:-41411822 | Msa0118550:CDS |
| AGATGTCTTAAACAAATCCA+TGG | 0.509786 | 1_3:-41414342 | Msa0118550:CDS |
| TCTGAATAGCATCTCTCCAT+AGG | 0.511599 | 1_3:+41412456 | None:intergenic |
| ATCACCATGCATTGACTCAA+AGG | 0.512042 | 1_3:-41412540 | Msa0118550:CDS |
| GAAAAGTGGTTTGAATGCAA+TGG | 0.512049 | 1_3:-41412435 | Msa0118550:CDS |
| GCAACAACATTAATGGATGC+TGG | 0.516023 | 1_3:-41415236 | Msa0118550:CDS |
| TCTAAGGAGATATGTGATGA+AGG | 0.516837 | 1_3:-41411829 | Msa0118550:CDS |
| AATGCAATGGCATCCTCAAA+GGG | 0.518794 | 1_3:-41412422 | Msa0118550:CDS |
| GTTCGTAGAGAAGCCTTGTA+AGG | 0.524507 | 1_3:+41412573 | None:intergenic |
| GAATGCAATGGCATCCTCAA+AGG | 0.525195 | 1_3:-41412423 | Msa0118550:CDS |
| AGCTCAAAAGATGAAGGAGA+TGG | 0.526880 | 1_3:-41413658 | Msa0118550:CDS |
| CTAAGGAGATATGTGATGAA+GGG | 0.528552 | 1_3:-41411828 | Msa0118550:CDS |
| TTTACTAGCTCAAAAGATGA+AGG | 0.534828 | 1_3:-41413664 | Msa0118550:CDS |
| GATCCAATAGTTCTTTGCTA+TGG | 0.535351 | 1_3:-41413026 | Msa0118550:CDS |
| ATCTCATGTTATTGCTGATG+AGG | 0.538384 | 1_3:-41414232 | Msa0118550:CDS |
| ACATGTCTGAAGAAGAAAAG+AGG | 0.539612 | 1_3:-41411917 | Msa0118550:CDS |
| TATGTGTTCACAAAGGCAAT+GGG | 0.540053 | 1_3:-41413254 | Msa0118550:CDS |
| TGAACCATTTCCTGGGTGGA+TGG | 0.540169 | 1_3:-41413153 | Msa0118550:CDS |
| AGTGGAGCAAGCAAAGTACT+TGG | 0.541589 | 1_3:-41412360 | Msa0118550:CDS |
| AAGGATATTGTCCCTTATGG+TGG | 0.543115 | 1_3:-41415164 | Msa0118550:CDS |
| TCACCATGCATTGACTCAAA+GGG | 0.547672 | 1_3:-41412539 | Msa0118550:CDS |
| CAAGAATAAGCAAGCTGCAA+TGG | 0.549669 | 1_3:-41414511 | Msa0118550:CDS |
| GCTTGCTCAACATAAAGGCT+TGG | 0.550415 | 1_3:+41414310 | None:intergenic |
| AGAGATGCTATTCAGAAAAG+TGG | 0.551199 | 1_3:-41412449 | Msa0118550:CDS |
| CTTTAAATGAACCATTTCCT+GGG | 0.552608 | 1_3:-41413160 | Msa0118550:CDS |
| GACTGAAAGATCATCAACAT+TGG | 0.555568 | 1_3:-41415276 | Msa0118550:CDS |
| CTATGTGTTCACAAAGGCAA+TGG | 0.561810 | 1_3:-41413255 | Msa0118550:CDS |
| TAATGCAACCCTAGCAGCAA+TGG | 0.564496 | 1_3:-41412678 | Msa0118550:CDS |
| GCATTGCCAAATTTCTTAGA+GGG | 0.564711 | 1_3:-41415097 | Msa0118550:CDS |
| CATTGCCTTTGTGAACACAT+AGG | 0.565731 | 1_3:+41413256 | None:intergenic |
| CAAGAGAGAAACTTATACCA+GGG | 0.569330 | 1_3:-41413770 | Msa0118550:CDS |
| AATATAGGTACCAGCTGACA+TGG | 0.571637 | 1_3:-41412705 | Msa0118550:intron |
| AAACATTTGTAGAAAATCAG+TGG | 0.573195 | 1_3:-41412378 | Msa0118550:CDS |
| AAAGTGCTTTCAATAACACT+TGG | 0.574171 | 1_3:+41413179 | None:intergenic |
| GAGTTGTTGGTCCACCATAA+GGG | 0.577677 | 1_3:+41415153 | None:intergenic |
| ATCACTAATGTTCATATACC+AGG | 0.582853 | 1_3:-41411852 | Msa0118550:CDS |
| GCATTAACAACCATGTCAGC+TGG | 0.586114 | 1_3:+41412695 | None:intergenic |
| CATGTCTGAAGAAGAAAAGA+GGG | 0.586886 | 1_3:-41411916 | Msa0118550:CDS |
| GCAAGAGAGAAACTTATACC+AGG | 0.591737 | 1_3:-41413771 | Msa0118550:CDS |
| TAGTGTCACTTACCACATCA+AGG | 0.592306 | 1_3:+41412961 | None:intergenic |
| TCTAAGGACAGAACCTGATG+TGG | 0.593162 | 1_3:-41414559 | Msa0118550:CDS |
| CTAGCAGCAATGGCAAAACA+TGG | 0.604867 | 1_3:-41412668 | Msa0118550:CDS |
| GCTCAAAAGATGAAGGAGAT+GGG | 0.607034 | 1_3:-41413657 | Msa0118550:CDS |
| TTTCCCTTTGAGTCAATGCA+TGG | 0.614016 | 1_3:+41412536 | None:intergenic |
| TAGCTTATGTCAATGGACAA+AGG | 0.620512 | 1_3:-41413839 | Msa0118550:CDS |
| TAAATGAACCATTTCCTGGG+TGG | 0.627098 | 1_3:-41413157 | Msa0118550:CDS |
| GCGATCGCCATAAGGCGACA+TGG | 0.630978 | 1_3:+41414018 | None:intergenic |
| CTAAGGACAGAACCTGATGT+GGG | 0.632559 | 1_3:-41414558 | Msa0118550:CDS |
| ATCACATATCTCCTTAGACC+TGG | 0.633165 | 1_3:+41411834 | None:intergenic |
| TATGTCAATGGACAAAGGCA+AGG | 0.637677 | 1_3:-41413834 | Msa0118550:CDS |
| ATAGGGCTAGAAGATATGGA+TGG | 0.646805 | 1_3:-41413286 | Msa0118550:intron |
| CTATTTCCTTCCATCCACCC+AGG | 0.649175 | 1_3:+41413143 | None:intergenic |
| ATGATTGGTATATTCCTACA+AGG | 0.654405 | 1_3:-41415385 | Msa0118550:CDS |
| GCAATCGACATAAACACTCG+AGG | 0.664899 | 1_3:-41414042 | Msa0118550:CDS |
| CAATCGACATAAACACTCGA+GGG | 0.670910 | 1_3:-41414041 | Msa0118550:CDS |
| GTACCAAATTGCTTCATCTG+TGG | 0.681732 | 1_3:-41412618 | Msa0118550:CDS |
| AAGAGAGAAACTTATACCAG+GGG | 0.696750 | 1_3:-41413769 | Msa0118550:CDS |
| ATGCAATGGCATCCTCAAAG+GGG | 0.715731 | 1_3:-41412421 | Msa0118550:CDS |
| TCCTAATGGAGTCCTTGATG+TGG | 0.722130 | 1_3:-41412973 | Msa0118550:intron |
| AGATACCTATGTGTTCACAA+AGG | 0.734887 | 1_3:-41413261 | Msa0118550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTCTTTAAATGT+TGG | - | chr1_3:41412282-41412301 | Msa0118550:intron | 10.0% |
| !!! | TTTTTTCAATAAATTCAATA+AGG | - | chr1_3:41412604-41412623 | Msa0118550:CDS | 10.0% |
| !!! | TTTAATAGTTTCTTTTTTTA+GGG | + | chr1_3:41415238-41415257 | None:intergenic | 10.0% |
| !!! | TATTTTAGAAAGTAAATTTG+TGG | + | chr1_3:41411834-41411853 | None:intergenic | 15.0% |
| !! | CAAATTATCATAGAATATTT+AGG | + | chr1_3:41412244-41412263 | None:intergenic | 15.0% |
| !! | TAATAACACTATAGTAAAAA+TGG | - | chr1_3:41413313-41413332 | Msa0118550:intron | 15.0% |
| !!! | AACAAAACTTTTGTTATTTT+TGG | + | chr1_3:41413390-41413409 | None:intergenic | 15.0% |
| !!! | TTGATTTGATTTTTCTATAT+AGG | - | chr1_3:41413954-41413973 | Msa0118550:intron | 15.0% |
| !!! | TGATTTGATTTTTCTATATA+GGG | - | chr1_3:41413955-41413974 | Msa0118550:intron | 15.0% |
| !!! | GTTTAATAGTTTCTTTTTTT+AGG | + | chr1_3:41415239-41415258 | None:intergenic | 15.0% |
| !! | AAAATCTTCTCAATAAGAAT+AGG | + | chr1_3:41412631-41412650 | None:intergenic | 20.0% |
| !! | AAAAATGTATCTATTGATCA+AGG | - | chr1_3:41412723-41412742 | Msa0118550:intron | 20.0% |
| !!! | AAATATGATTTTGAAGAACA+AGG | - | chr1_3:41413555-41413574 | Msa0118550:intron | 20.0% |
| !!! | AATATGATTTTGAAGAACAA+GGG | - | chr1_3:41413556-41413575 | Msa0118550:intron | 20.0% |
| !!! | TAAGATTATTCTAGAATTTG+TGG | + | chr1_3:41413691-41413710 | None:intergenic | 20.0% |
| !! | AAGAATATTCACTTAATTGA+TGG | + | chr1_3:41413916-41413935 | None:intergenic | 20.0% |
| !!! | AAACATTTTTTTCTTCTTGT+TGG | - | chr1_3:41414193-41414212 | Msa0118550:CDS | 20.0% |
| !! | TCACATAATTCTATGAAATT+CGG | - | chr1_3:41414332-41414351 | Msa0118550:CDS | 20.0% |
| !!! | CTATTTAACTTATGAGTATA+TGG | + | chr1_3:41414456-41414475 | None:intergenic | 20.0% |
| !! | CATATACTCATAAGTTAAAT+AGG | - | chr1_3:41414454-41414473 | Msa0118550:intron | 20.0% |
| !!! | TGTATATGGTTCATAAATTT+TGG | + | chr1_3:41414924-41414943 | None:intergenic | 20.0% |
| !!! | TATGAACCATATACATTTTA+TGG | - | chr1_3:41414929-41414948 | Msa0118550:intron | 20.0% |
| !! | CTAAAAATAAACTTAAGAGA+GGG | - | chr1_3:41415197-41415216 | Msa0118550:CDS | 20.0% |
| !! | TAAAAATAAACTTAAGAGAG+GGG | - | chr1_3:41415198-41415217 | Msa0118550:CDS | 20.0% |
| ! | TAAATTTGTGGAATGACTTA+TGG | + | chr1_3:41411822-41411841 | None:intergenic | 25.0% |
| !!! | ATATACCAATCATTGTTTTG+AGG | + | chr1_3:41411866-41411885 | None:intergenic | 25.0% |
| !!! | AATTTGGTTTTGTCACAAAA+TGG | - | chr1_3:41412046-41412065 | Msa0118550:intron | 25.0% |
| ! | TAAAAATCAGACAGATATTG+TGG | - | chr1_3:41412069-41412088 | Msa0118550:intron | 25.0% |
| ! | CTCTAACTTATTGAAAATCA+TGG | + | chr1_3:41412346-41412365 | None:intergenic | 25.0% |
| ! | TTCTTATTGAGAAGATTCTA+AGG | - | chr1_3:41412683-41412702 | Msa0118550:CDS | 25.0% |
| ! | TTTGTATTTGTCAAAGTTCA+TGG | - | chr1_3:41412816-41412835 | Msa0118550:intron | 25.0% |
| ! | GATATTTGTGAAACTAATCT+TGG | - | chr1_3:41412988-41413007 | Msa0118550:CDS | 25.0% |
| !! | CTAATACAACTTTTGATGAA+AGG | - | chr1_3:41413073-41413092 | Msa0118550:intron | 25.0% |
| !! | CATGAGAATTCATCATTTTA+TGG | + | chr1_3:41413114-41413133 | None:intergenic | 25.0% |
| ! | AGTCATATATACTTATCACA+TGG | + | chr1_3:41413355-41413374 | None:intergenic | 25.0% |
| !! | TAATTTGTAGCTTATGTCAA+TGG | - | chr1_3:41413412-41413431 | Msa0118550:intron | 25.0% |
| ! | TAATTCATAATTCGATCAGA+AGG | + | chr1_3:41413792-41413811 | None:intergenic | 25.0% |
| !!! | GTTTTAACTATCTGATTTTC+AGG | + | chr1_3:41413830-41413849 | None:intergenic | 25.0% |
| ! | AAATGATGATTGACAAATTG+AGG | - | chr1_3:41414029-41414048 | Msa0118550:CDS | 25.0% |
| ! | AATGATGATTGACAAATTGA+GGG | - | chr1_3:41414030-41414049 | Msa0118550:CDS | 25.0% |
| ! | ATATTCCAGTTGTTGTAATT+AGG | - | chr1_3:41414056-41414075 | Msa0118550:intron | 25.0% |
| !!! | GTCACAAACTTTTTCTTATA+AGG | - | chr1_3:41414142-41414161 | Msa0118550:intron | 25.0% |
| !!! | TTAGTTCTATCACACAAATT+AGG | + | chr1_3:41414175-41414194 | None:intergenic | 25.0% |
| ! | AAACATTTGTAGAAAATCAG+TGG | - | chr1_3:41414880-41414899 | Msa0118550:intron | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | - | chr1_3:41415086-41415105 | Msa0118550:CDS | 25.0% |
| ! | GCTAAAAATAAACTTAAGAG+AGG | - | chr1_3:41415196-41415215 | Msa0118550:CDS | 25.0% |
| !!! | ATAGTTTCTTTTTTTAGGGT+GGG | + | chr1_3:41415234-41415253 | None:intergenic | 25.0% |
| !!! | AATAGTTTCTTTTTTTAGGG+TGG | + | chr1_3:41415235-41415254 | None:intergenic | 25.0% |
| ! | GAGTTTAGATTTGATGTAAA+AGG | - | chr1_3:41415364-41415383 | Msa0118550:CDS | 25.0% |
| AACTACCTCAAAACAATGAT+TGG | - | chr1_3:41411858-41411877 | Msa0118550:CDS | 30.0% | |
| ATGATTGGTATATTCCTACA+AGG | - | chr1_3:41411873-41411892 | Msa0118550:CDS | 30.0% | |
| ! | ATTAATGGATGCTGGAAATT+TGG | - | chr1_3:41412030-41412049 | Msa0118550:intron | 30.0% |
| ATTAATGTAGTAGGAGTTGT+TGG | + | chr1_3:41412121-41412140 | None:intergenic | 30.0% | |
| ACAACTCCTACTACATTAAT+TGG | - | chr1_3:41412121-41412140 | Msa0118550:intron | 30.0% | |
| TCAAGTCCAATTAATGTAGT+AGG | + | chr1_3:41412130-41412149 | None:intergenic | 30.0% | |
| ACATTAATTGGACTTGATGA+TGG | - | chr1_3:41412133-41412152 | Msa0118550:intron | 30.0% | |
| ! | ATTTGAGTAGCTTGTAACTA+TGG | + | chr1_3:41412427-41412446 | None:intergenic | 30.0% |
| AGATGTCTTAAACAAATCCA+TGG | - | chr1_3:41412916-41412935 | Msa0118550:intron | 30.0% | |
| TCACAAATATCTCCAACAAT+AGG | + | chr1_3:41412979-41412998 | None:intergenic | 30.0% | |
| ATGGAAAGACCATTTAGTAT+TGG | - | chr1_3:41413454-41413473 | Msa0118550:intron | 30.0% | |
| ATGCAATCACCAATACTAAA+TGG | + | chr1_3:41413466-41413485 | None:intergenic | 30.0% | |
| !! | AAAGTAGGAATGTATTTTGG+TGG | + | chr1_3:41413517-41413536 | None:intergenic | 30.0% |
| ACCAAAATACATTCCTACTT+TGG | - | chr1_3:41413516-41413535 | Msa0118550:intron | 30.0% | |
| ! | TCCAAAGTAGGAATGTATTT+TGG | + | chr1_3:41413520-41413539 | None:intergenic | 30.0% |
| ! | TCATTTTCAATGTCCAAAGT+AGG | + | chr1_3:41413532-41413551 | None:intergenic | 30.0% |
| TTTACTAGCTCAAAAGATGA+AGG | - | chr1_3:41413594-41413613 | Msa0118550:intron | 30.0% | |
| TACAACCAGGATTCAAATTT+AGG | + | chr1_3:41413744-41413763 | None:intergenic | 30.0% | |
| !!! | CTATCTGATTTTCAGGTAAA+TGG | + | chr1_3:41413823-41413842 | None:intergenic | 30.0% |
| ! | AAAGTGCTTTCAATAACACT+TGG | + | chr1_3:41414082-41414101 | None:intergenic | 30.0% |
| ACTTTAAATGAACCATTTCC+TGG | - | chr1_3:41414097-41414116 | Msa0118550:intron | 30.0% | |
| CTTTAAATGAACCATTTCCT+GGG | - | chr1_3:41414098-41414117 | Msa0118550:intron | 30.0% | |
| TTACCATAGCAAAGAACTAT+TGG | + | chr1_3:41414238-41414257 | None:intergenic | 30.0% | |
| ! | ATAGTTCTTTGCTATGGTAA+AGG | - | chr1_3:41414238-41414257 | Msa0118550:CDS | 30.0% |
| TACATAACCAAACATTTCCT+AGG | - | chr1_3:41414367-41414386 | Msa0118550:intron | 30.0% | |
| AGTATATGGTCTATGAAGTT+CGG | + | chr1_3:41414442-41414461 | None:intergenic | 30.0% | |
| ! | ACATTACTTGCTCTGAATAT+AGG | - | chr1_3:41414538-41414557 | Msa0118550:CDS | 30.0% |
| TTCATGATTGGAACTTGAAT+TGG | + | chr1_3:41414749-41414768 | None:intergenic | 30.0% | |
| ! | GAACCATATACATTTTATGG+TGG | - | chr1_3:41414932-41414951 | Msa0118550:intron | 30.0% |
| CTTCCACCATAAAATGTATA+TGG | + | chr1_3:41414938-41414957 | None:intergenic | 30.0% | |
| !! | CATATACATTTTATGGTGGA+AGG | - | chr1_3:41414936-41414955 | Msa0118550:intron | 30.0% |
| GAAACAAATAAATGTGATGC+AGG | - | chr1_3:41415284-41415303 | Msa0118550:CDS | 30.0% | |
| ! | TTGATGTAAAAGGCATAGAT+TGG | - | chr1_3:41415374-41415393 | Msa0118550:CDS | 30.0% |
| ATCACTAATGTTCATATACC+AGG | - | chr1_3:41415406-41415425 | Msa0118550:CDS | 30.0% | |
| TTTGTAGTCTTTGTCCTTGT+AGG | + | chr1_3:41411890-41411909 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGTTTTGTCATCA+AGG | - | chr1_3:41411914-41411933 | Msa0118550:CDS | 35.0% |
| GACTGAAAGATCATCAACAT+TGG | - | chr1_3:41411982-41412001 | Msa0118550:intron | 35.0% | |
| TCATGCTGCAACAACATTAA+TGG | - | chr1_3:41412015-41412034 | Msa0118550:intron | 35.0% | |
| TCAGACAGATATTGTGGTTA+AGG | - | chr1_3:41412075-41412094 | Msa0118550:intron | 35.0% | |
| GTTAAGGATATTGTCCCTTA+TGG | - | chr1_3:41412091-41412110 | Msa0118550:intron | 35.0% | |
| !! | ATTGGACTTGATGATGGAAT+TGG | - | chr1_3:41412139-41412158 | Msa0118550:intron | 35.0% |
| GCATTGCCAAATTTCTTAGA+GGG | - | chr1_3:41412161-41412180 | Msa0118550:intron | 35.0% | |
| ! | CTTCTTCCCTCTAAGAAATT+TGG | + | chr1_3:41412170-41412189 | None:intergenic | 35.0% |
| !!! | GGGAAGAAGTTTTTTGTTAC+TGG | - | chr1_3:41412181-41412200 | Msa0118550:intron | 35.0% |
| !!! | TTTTTTGTTACTGGAGCAAC+TGG | - | chr1_3:41412190-41412209 | Msa0118550:intron | 35.0% |
| ! | AGATACATTTTTCCCACATC+AGG | + | chr1_3:41412715-41412734 | None:intergenic | 35.0% |
| !! | AACTAGCTTGCTCAACATAA+AGG | + | chr1_3:41412956-41412975 | None:intergenic | 35.0% |
| ATCTCATGTTATTGCTGATG+AGG | - | chr1_3:41413026-41413045 | Msa0118550:CDS | 35.0% | |
| CTCTTTCTTCATGTTTCAAC+AGG | - | chr1_3:41413285-41413304 | Msa0118550:CDS | 35.0% | |
| TAGCTTATGTCAATGGACAA+AGG | - | chr1_3:41413419-41413438 | Msa0118550:intron | 35.0% | |
| ACAAAGGCAAGGTAGAATAA+TGG | - | chr1_3:41413435-41413454 | Msa0118550:intron | 35.0% | |
| CAAGAGAGAAACTTATACCA+GGG | - | chr1_3:41413488-41413507 | Msa0118550:intron | 35.0% | |
| AAGAGAGAAACTTATACCAG+GGG | - | chr1_3:41413489-41413508 | Msa0118550:intron | 35.0% | |
| AGGATTCAAATTTAGGCTCA+CGG | + | chr1_3:41413737-41413756 | None:intergenic | 35.0% | |
| TACTGATGAATGATACAACC+AGG | + | chr1_3:41413757-41413776 | None:intergenic | 35.0% | |
| CTATATAGGGCTAGAAGATA+TGG | - | chr1_3:41413968-41413987 | Msa0118550:intron | 35.0% | |
| AGATACCTATGTGTTCACAA+AGG | - | chr1_3:41413997-41414016 | Msa0118550:CDS | 35.0% | |
| TATGTGTTCACAAAGGCAAT+GGG | - | chr1_3:41414004-41414023 | Msa0118550:CDS | 35.0% | |
| TTCTTCTTGTTGGAACTACT+AGG | - | chr1_3:41414203-41414222 | Msa0118550:CDS | 35.0% | |
| GATCCAATAGTTCTTTGCTA+TGG | - | chr1_3:41414232-41414251 | Msa0118550:CDS | 35.0% | |
| TATGGTAAAGGACAACTAAC+AGG | - | chr1_3:41414250-41414269 | Msa0118550:CDS | 35.0% | |
| TGTTACTCCTAGGAAATGTT+TGG | + | chr1_3:41414377-41414396 | None:intergenic | 35.0% | |
| AAGTTCGGATACATCGAAAT+GGG | + | chr1_3:41414410-41414429 | None:intergenic | 35.0% | |
| ! | GTTCGGATACATTTGAAGTT+CGG | + | chr1_3:41414425-41414444 | None:intergenic | 35.0% |
| !!! | AATTCTCGCACTTTTTTTCG+TGG | - | chr1_3:41414491-41414510 | Msa0118550:intron | 35.0% |
| TAACCACAGATGAAGCAATT+TGG | + | chr1_3:41414646-41414665 | None:intergenic | 35.0% | |
| TAAGGTCTTGGAAGACTAAA+GGG | + | chr1_3:41414670-41414689 | None:intergenic | 35.0% | |
| GAGCTAAACAACTTCATGAT+TGG | + | chr1_3:41414761-41414780 | None:intergenic | 35.0% | |
| AGAGATGCTATTCAGAAAAG+TGG | - | chr1_3:41414809-41414828 | Msa0118550:intron | 35.0% | |
| GAAAAGTGGTTTGAATGCAA+TGG | - | chr1_3:41414823-41414842 | Msa0118550:intron | 35.0% | |
| ! | TTTTAGCCTCACTAACTCTT+TGG | + | chr1_3:41415183-41415202 | None:intergenic | 35.0% |
| AAATAAACTTAAGAGAGGGG+AGG | - | chr1_3:41415201-41415220 | Msa0118550:CDS | 35.0% | |
| ACATGTCTGAAGAAGAAAAG+AGG | - | chr1_3:41415341-41415360 | Msa0118550:CDS | 35.0% | |
| CATGTCTGAAGAAGAAAAGA+GGG | - | chr1_3:41415342-41415361 | Msa0118550:CDS | 35.0% | |
| ATGTTCATATACCAGGTCTA+AGG | - | chr1_3:41415413-41415432 | Msa0118550:CDS | 35.0% | |
| TCTAAGGAGATATGTGATGA+AGG | - | chr1_3:41415429-41415448 | Msa0118550:CDS | 35.0% | |
| CTAAGGAGATATGTGATGAA+GGG | - | chr1_3:41415430-41415449 | Msa0118550:CDS | 35.0% | |
| ! | GTTGTGTTTTGTCATCAAGG+TGG | - | chr1_3:41411917-41411936 | Msa0118550:CDS | 40.0% |
| ! | GCAACAACATTAATGGATGC+TGG | - | chr1_3:41412022-41412041 | Msa0118550:intron | 40.0% |
| AAGGATATTGTCCCTTATGG+TGG | - | chr1_3:41412094-41412113 | Msa0118550:intron | 40.0% | |
| GGCATTGCCAAATTTCTTAG+AGG | - | chr1_3:41412160-41412179 | Msa0118550:intron | 40.0% | |
| !! | GCAACTGGATTTCTAGCAAA+AGG | - | chr1_3:41412205-41412224 | Msa0118550:intron | 40.0% |
| ! | CATTGCAGCTTGCTTATTCT+TGG | + | chr1_3:41412749-41412768 | None:intergenic | 40.0% |
| CAAGAATAAGCAAGCTGCAA+TGG | - | chr1_3:41412747-41412766 | Msa0118550:intron | 40.0% | |
| !! | AGGCTTGGTATGATTTTCCA+TGG | + | chr1_3:41412936-41412955 | None:intergenic | 40.0% |
| AGCAAGCTAGTTCCTATTGT+TGG | - | chr1_3:41412964-41412983 | Msa0118550:intron | 40.0% | |
| CAATCGACATAAACACTCGA+GGG | - | chr1_3:41413217-41413236 | Msa0118550:CDS | 40.0% | |
| TATGTCAATGGACAAAGGCA+AGG | - | chr1_3:41413424-41413443 | Msa0118550:intron | 40.0% | |
| GCAAGAGAGAAACTTATACC+AGG | - | chr1_3:41413487-41413506 | Msa0118550:intron | 40.0% | |
| AGCTCAAAAGATGAAGGAGA+TGG | - | chr1_3:41413600-41413619 | Msa0118550:intron | 40.0% | |
| GCTCAAAAGATGAAGGAGAT+GGG | - | chr1_3:41413601-41413620 | Msa0118550:intron | 40.0% | |
| GTGAGCCTAAATTTGAATCC+TGG | - | chr1_3:41413736-41413755 | Msa0118550:CDS | 40.0% | |
| ATAGGGCTAGAAGATATGGA+TGG | - | chr1_3:41413972-41413991 | Msa0118550:intron | 40.0% | |
| CATTGCCTTTGTGAACACAT+AGG | + | chr1_3:41414005-41414024 | None:intergenic | 40.0% | |
| CTATGTGTTCACAAAGGCAA+TGG | - | chr1_3:41414003-41414022 | Msa0118550:CDS | 40.0% | |
| CTTGGCCTAATTACAACAAC+TGG | + | chr1_3:41414064-41414083 | None:intergenic | 40.0% | |
| TAAATGAACCATTTCCTGGG+TGG | - | chr1_3:41414101-41414120 | Msa0118550:intron | 40.0% | |
| TGTTGGAACTACTAGGATGA+TGG | - | chr1_3:41414210-41414229 | Msa0118550:CDS | 40.0% | |
| AGGACAACTAACAGGTTTCT+TGG | - | chr1_3:41414258-41414277 | Msa0118550:CDS | 40.0% | |
| GGTTTCTTGGTTGATCCTAA+TGG | - | chr1_3:41414271-41414290 | Msa0118550:CDS | 40.0% | |
| !! | TAGTGTCACTTACCACATCA+AGG | + | chr1_3:41414300-41414319 | None:intergenic | 40.0% |
| !! | GAAGTATCGATGTTACTCCT+AGG | + | chr1_3:41414387-41414406 | None:intergenic | 40.0% |
| AGTTCGGATACATCGAAATG+GGG | + | chr1_3:41414409-41414428 | None:intergenic | 40.0% | |
| GAAGTTCGGATACATCGAAA+TGG | + | chr1_3:41414411-41414430 | None:intergenic | 40.0% | |
| AATATAGGTACCAGCTGACA+TGG | - | chr1_3:41414553-41414572 | Msa0118550:CDS | 40.0% | |
| ! | ATGTTTTGCCATTGCTGCTA+GGG | + | chr1_3:41414591-41414610 | None:intergenic | 40.0% |
| GTACCAAATTGCTTCATCTG+TGG | - | chr1_3:41414640-41414659 | Msa0118550:intron | 40.0% | |
| GTAAGGTCTTGGAAGACTAA+AGG | + | chr1_3:41414671-41414690 | None:intergenic | 40.0% | |
| TAGTCTTCCAAGACCTTACA+AGG | - | chr1_3:41414672-41414691 | Msa0118550:intron | 40.0% | |
| !! | ATCACCATGCATTGACTCAA+AGG | - | chr1_3:41414718-41414737 | Msa0118550:intron | 40.0% |
| !! | TCACCATGCATTGACTCAAA+GGG | - | chr1_3:41414719-41414738 | Msa0118550:intron | 40.0% |
| TTTCCCTTTGAGTCAATGCA+TGG | + | chr1_3:41414725-41414744 | None:intergenic | 40.0% | |
| AGCTCATCAGAAGAATTCTC+TGG | - | chr1_3:41414776-41414795 | Msa0118550:intron | 40.0% | |
| AAGAATTCTCTGGTCACCTA+TGG | - | chr1_3:41414786-41414805 | Msa0118550:intron | 40.0% | |
| TCTGAATAGCATCTCTCCAT+AGG | + | chr1_3:41414805-41414824 | None:intergenic | 40.0% | |
| AATGCAATGGCATCCTCAAA+GGG | - | chr1_3:41414836-41414855 | Msa0118550:intron | 40.0% | |
| TTGATACATCTTCCCCTTTG+AGG | + | chr1_3:41414852-41414871 | None:intergenic | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | - | chr1_3:41415092-41415111 | Msa0118550:CDS | 40.0% |
| ATCACATATCTCCTTAGACC+TGG | + | chr1_3:41415427-41415446 | None:intergenic | 40.0% | |
| AGATATGTGATGAAGGGAAG+AGG | - | chr1_3:41415436-41415455 | Msa0118550:CDS | 40.0% | |
| ! | GTGTTTTGTCATCAAGGTGG+AGG | - | chr1_3:41411920-41411939 | Msa0118550:CDS | 45.0% |
| ! | TTTTGTCATCAAGGTGGAGG+TGG | - | chr1_3:41411923-41411942 | Msa0118550:CDS | 45.0% |
| GAGTTGTTGGTCCACCATAA+GGG | + | chr1_3:41412108-41412127 | None:intergenic | 45.0% | |
| TCTAAGGACAGAACCTGATG+TGG | - | chr1_3:41412699-41412718 | Msa0118550:CDS | 45.0% | |
| CTAAGGACAGAACCTGATGT+GGG | - | chr1_3:41412700-41412719 | Msa0118550:CDS | 45.0% | |
| GCTTGCTCAACATAAAGGCT+TGG | + | chr1_3:41412951-41412970 | None:intergenic | 45.0% | |
| GCAATCGACATAAACACTCG+AGG | - | chr1_3:41413216-41413235 | Msa0118550:CDS | 45.0% | |
| !!! | ACTTTTTCGCGATCGCCATA+AGG | + | chr1_3:41413251-41413270 | None:intergenic | 45.0% |
| TCCTAATGGAGTCCTTGATG+TGG | - | chr1_3:41414285-41414304 | Msa0118550:CDS | 45.0% | |
| ACCACATCAAGGACTCCATT+AGG | + | chr1_3:41414289-41414308 | None:intergenic | 45.0% | |
| GCATTAACAACCATGTCAGC+TGG | + | chr1_3:41414566-41414585 | None:intergenic | 45.0% | |
| TAATGCAACCCTAGCAGCAA+TGG | - | chr1_3:41414580-41414599 | Msa0118550:intron | 45.0% | |
| ! | CATGTTTTGCCATTGCTGCT+AGG | + | chr1_3:41414592-41414611 | None:intergenic | 45.0% |
| CTAGCAGCAATGGCAAAACA+TGG | - | chr1_3:41414590-41414609 | Msa0118550:intron | 45.0% | |
| ! | AGAGAAGCCTTGTAAGGTCT+TGG | + | chr1_3:41414682-41414701 | None:intergenic | 45.0% |
| ! | GTTCGTAGAGAAGCCTTGTA+AGG | + | chr1_3:41414688-41414707 | None:intergenic | 45.0% |
| GAATGCAATGGCATCCTCAA+AGG | - | chr1_3:41414835-41414854 | Msa0118550:intron | 45.0% | |
| ATGCAATGGCATCCTCAAAG+GGG | - | chr1_3:41414837-41414856 | Msa0118550:intron | 45.0% | |
| ! | AGTGGAGCAAGCAAAGTACT+TGG | - | chr1_3:41414898-41414917 | Msa0118550:intron | 45.0% |
| GAACCACCTACTATGAAGCA+CGG | - | chr1_3:41415002-41415021 | Msa0118550:intron | 45.0% | |
| TATCCGTGCTTCATAGTAGG+TGG | + | chr1_3:41415008-41415027 | None:intergenic | 45.0% | |
| CCTACTATGAAGCACGGATA+CGG | - | chr1_3:41415008-41415027 | Msa0118550:intron | 45.0% | |
| TATGAAGCACGGACATTCCT+CGG | + | chr1_3:41415153-41415172 | None:intergenic | 45.0% | |
| !! | TTGGTGGACTCTATGAAGCA+CGG | + | chr1_3:41415164-41415183 | None:intergenic | 45.0% |
| AGTCCACCAAAGAGTTAGTG+AGG | - | chr1_3:41415174-41415193 | Msa0118550:CDS | 45.0% | |
| TAGCCTCACTAACTCTTTGG+TGG | + | chr1_3:41415180-41415199 | None:intergenic | 45.0% | |
| GGAGTTGTTGGTCCACCATA+AGG | + | chr1_3:41412109-41412128 | None:intergenic | 50.0% | |
| !!! | ATGTATTTTGGTGGCACCCC+TGG | + | chr1_3:41413508-41413527 | None:intergenic | 50.0% |
| TGAAGGAGATGGGTCTAGAG+AGG | - | chr1_3:41413611-41413630 | Msa0118550:intron | 50.0% | |
| TGAACCATTTCCTGGGTGGA+TGG | - | chr1_3:41414105-41414124 | Msa0118550:intron | 50.0% | |
| CTATTTCCTTCCATCCACCC+AGG | + | chr1_3:41414118-41414137 | None:intergenic | 50.0% | |
| CTGGGTGGATGGAAGGAAAT+AGG | - | chr1_3:41414116-41414135 | Msa0118550:intron | 50.0% | |
| CCGTATCCGTGCTTCATAGT+AGG | + | chr1_3:41415011-41415030 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | - | chr1_3:41415014-41415033 | Msa0118550:intron | 50.0% | |
| CCTTCCATCCACCCAGGAAA+TGG | + | chr1_3:41414112-41414131 | None:intergenic | 55.0% | |
| CCATTTCCTGGGTGGATGGA+AGG | - | chr1_3:41414109-41414128 | Msa0118550:intron | 55.0% | |
| TGAAGCACGGATACGGACAC+GGG | - | chr1_3:41415015-41415034 | Msa0118550:intron | 55.0% | |
| GATTAGGTGTGTCCCGGTGT+CGG | + | chr1_3:41415131-41415150 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+CGG | + | chr1_3:41415137-41415156 | None:intergenic | 55.0% |
| GCACGGACATTCCTCGGATT+AGG | + | chr1_3:41415147-41415166 | None:intergenic | 55.0% | |
| TCGAGGGCCATGTCGCCTTA+TGG | - | chr1_3:41413233-41413252 | Msa0118550:CDS | 60.0% | |
| GCGATCGCCATAAGGCGACA+TGG | + | chr1_3:41413243-41413262 | None:intergenic | 60.0% | |
| TACGGACACGGGACACGACA+CGG | - | chr1_3:41415026-41415045 | Msa0118550:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | - | chr1_3:41415115-41415134 | Msa0118550:CDS | 60.0% | |
| ACCGGGACACACCTAATCCG+AGG | - | chr1_3:41415133-41415152 | Msa0118550:CDS | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr1_3:41415116-41415135 | Msa0118550:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 41411806 | 41415474 | 41411806 | ID=Msa0118550;Name=Msa0118550 |
| chr1_3 | mRNA | 41411806 | 41415474 | 41411806 | ID=Msa0118550-mRNA-1;Parent=Msa0118550;Name=Msa0118550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|9|0|615 |
| chr1_3 | exon | 41415054 | 41415474 | 41415054 | ID=Msa0118550-mRNA-1:exon:12557;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41414494 | 41414597 | 41414494 | ID=Msa0118550-mRNA-1:exon:12556;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41414186 | 41414385 | 41414186 | ID=Msa0118550-mRNA-1:exon:12555;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41413974 | 41414074 | 41413974 | ID=Msa0118550-mRNA-1:exon:12554;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41413648 | 41413858 | 41413648 | ID=Msa0118550-mRNA-1:exon:12553;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41413143 | 41413304 | 41413143 | ID=Msa0118550-mRNA-1:exon:12552;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41412974 | 41413055 | 41412974 | ID=Msa0118550-mRNA-1:exon:12551;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41412323 | 41412720 | 41412323 | ID=Msa0118550-mRNA-1:exon:12550;Parent=Msa0118550-mRNA-1 |
| chr1_3 | exon | 41411806 | 41411974 | 41411806 | ID=Msa0118550-mRNA-1:exon:12549;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41415054 | 41415474 | 41415054 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41414494 | 41414597 | 41414494 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41414186 | 41414385 | 41414186 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41413974 | 41414074 | 41413974 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41413648 | 41413858 | 41413648 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41413143 | 41413304 | 41413143 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41412974 | 41413055 | 41412974 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41412323 | 41412720 | 41412323 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| chr1_3 | CDS | 41411806 | 41411974 | 41411806 | ID=Msa0118550-mRNA-1:cds;Parent=Msa0118550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
