Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115180 | sp|Q08891|FACR2_ARATH | 64.448 | 571 | 186 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115180 | A0A072VJJ5 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016670 | Msa0115180 | 0.801180 | 1.016700e-48 | -8.615850e-47 |
| Msa0070660 | Msa0115180 | 0.845881 | 3.080047e-59 | -8.615850e-47 |
| Msa0115180 | Msa0118550 | 0.850056 | 2.173293e-60 | -8.615850e-47 |
| Msa0115180 | Msa0161830 | 0.845691 | 3.468095e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115180 | MtrunA17_Chr1g0176054 | 96.423 | 615 | 22 | 0 | 1 | 615 | 1 | 615 | 0.0 | 1233 |
| Msa0115180 | MtrunA17_Chr2g0321181 | 41.483 | 499 | 269 | 7 | 120 | 608 | 6 | 491 | 1.21e-133 | 400 |
| Msa0115180 | MtrunA17_Chr4g0026691 | 39.880 | 499 | 277 | 7 | 120 | 608 | 6 | 491 | 2.25e-131 | 394 |
| Msa0115180 | MtrunA17_Chr4g0026701 | 39.880 | 499 | 289 | 6 | 114 | 608 | 1 | 492 | 4.78e-131 | 393 |
| Msa0115180 | MtrunA17_Chr2g0321201 | 40.562 | 498 | 274 | 7 | 120 | 608 | 8 | 492 | 1.75e-130 | 392 |
| Msa0115180 | MtrunA17_Chr4g0026711 | 38.153 | 498 | 285 | 9 | 123 | 608 | 9 | 495 | 1.66e-118 | 361 |
| Msa0115180 | MtrunA17_Chr4g0026771 | 36.653 | 502 | 287 | 8 | 123 | 608 | 6 | 492 | 1.31e-116 | 356 |
| Msa0115180 | MtrunA17_Chr6g0465391 | 36.200 | 500 | 267 | 9 | 120 | 610 | 6 | 462 | 4.65e-103 | 320 |
| Msa0115180 | MtrunA17_Chr5g0419501 | 34.190 | 389 | 189 | 9 | 123 | 506 | 9 | 335 | 2.63e-63 | 213 |
| Msa0115180 | MtrunA17_Chr4g0026891 | 39.024 | 246 | 128 | 5 | 123 | 358 | 6 | 239 | 3.56e-52 | 181 |
| Msa0115180 | MtrunA17_Chr5g0431241 | 48.387 | 124 | 61 | 2 | 120 | 242 | 6 | 127 | 1.73e-31 | 119 |
| Msa0115180 | MtrunA17_Chr5g0431251 | 39.167 | 120 | 68 | 1 | 314 | 428 | 11 | 130 | 7.24e-28 | 109 |
| Msa0115180 | MtrunA17_Chr4g0026911 | 32.418 | 182 | 119 | 2 | 428 | 605 | 3 | 184 | 1.24e-26 | 107 |
| Msa0115180 | MtrunA17_Chr5g0431281 | 31.658 | 199 | 118 | 7 | 418 | 608 | 22 | 210 | 9.28e-23 | 96.7 |
| Msa0115180 | MtrunA17_Chr6g0465381 | 36.111 | 144 | 90 | 2 | 362 | 504 | 1 | 143 | 2.57e-20 | 88.6 |
| Msa0115180 | MtrunA17_Chr4g0026901 | 54.545 | 55 | 25 | 0 | 346 | 400 | 16 | 70 | 1.85e-17 | 77.4 |
| Msa0115180 | MtrunA17_Chr5g0431271 | 46.269 | 67 | 36 | 0 | 362 | 428 | 1 | 67 | 1.26e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115180 | AT3G11980.1 | 64.448 | 571 | 186 | 7 | 48 | 611 | 56 | 616 | 0.0 | 736 |
| Msa0115180 | AT3G56700.2 | 46.559 | 494 | 232 | 7 | 116 | 604 | 73 | 539 | 2.16e-153 | 453 |
| Msa0115180 | AT3G56700.1 | 43.927 | 494 | 224 | 8 | 116 | 604 | 73 | 518 | 5.67e-138 | 412 |
| Msa0115180 | AT5G22500.1 | 41.833 | 502 | 261 | 10 | 121 | 608 | 6 | 490 | 5.61e-128 | 385 |
| Msa0115180 | AT3G44540.1 | 39.960 | 503 | 269 | 10 | 122 | 608 | 7 | 492 | 1.32e-126 | 382 |
| Msa0115180 | AT4G33790.1 | 39.479 | 499 | 280 | 6 | 118 | 607 | 8 | 493 | 1.91e-122 | 372 |
| Msa0115180 | AT3G44550.1 | 40.472 | 509 | 269 | 8 | 118 | 608 | 3 | 495 | 1.50e-121 | 369 |
| Msa0115180 | AT3G44560.1 | 41.352 | 503 | 263 | 10 | 123 | 608 | 8 | 495 | 1.78e-115 | 353 |
| Msa0115180 | AT5G22500.2 | 43.655 | 394 | 203 | 6 | 122 | 509 | 7 | 387 | 3.82e-109 | 334 |
| Msa0115180 | AT3G44560.3 | 40.355 | 451 | 242 | 9 | 123 | 561 | 8 | 443 | 1.66e-98 | 308 |
| Msa0115180 | AT3G44560.2 | 42.386 | 394 | 209 | 5 | 123 | 509 | 8 | 390 | 1.29e-95 | 300 |
| Msa0115180 | AT3G44540.2 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 1.56e-93 | 290 |
| Msa0115180 | AT3G44540.3 | 45.110 | 317 | 154 | 5 | 122 | 430 | 7 | 311 | 1.56e-93 | 290 |
| Msa0115180 | AT4G33790.2 | 39.487 | 390 | 215 | 5 | 226 | 607 | 4 | 380 | 2.83e-91 | 287 |
| Msa0115180 | AT3G44550.2 | 39.850 | 399 | 208 | 6 | 226 | 608 | 4 | 386 | 5.58e-90 | 284 |
| Msa0115180 | AT5G22420.4 | 38.522 | 379 | 206 | 8 | 226 | 594 | 4 | 365 | 7.14e-81 | 259 |
| Msa0115180 | AT5G22420.1 | 36.702 | 376 | 211 | 8 | 229 | 594 | 43 | 401 | 1.22e-73 | 242 |
| Msa0115180 | AT5G22420.3 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 5.22e-73 | 239 |
| Msa0115180 | AT5G22420.6 | 37.637 | 364 | 200 | 8 | 241 | 594 | 3 | 349 | 5.22e-73 | 239 |
| Msa0115180 | AT5G22420.5 | 35.562 | 329 | 185 | 8 | 276 | 594 | 3 | 314 | 6.66e-59 | 200 |
| Msa0115180 | AT5G22420.2 | 38.931 | 262 | 151 | 5 | 337 | 594 | 39 | 295 | 6.83e-56 | 191 |
| Msa0115180 | AT5G22420.7 | 38.931 | 262 | 151 | 5 | 337 | 594 | 39 | 295 | 6.83e-56 | 191 |
Find 120 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGGTTCATAAATTT+TGG | 0.115170 | 1_3:-33954627 | None:intergenic |
| CTTCTTCCCTCTAAGAAATT+TGG | 0.132028 | 1_3:-33951918 | None:intergenic |
| CATTGCAGCTTGCTTATTCT+TGG | 0.149647 | 1_3:-33952456 | None:intergenic |
| ATTAATGGATGCTGGAAATT+TGG | 0.168524 | 1_3:+33951781 | Msa0115180:CDS |
| ACAACTACTACTACATTAAT+TGG | 0.249830 | 1_3:+33951872 | Msa0115180:CDS |
| TAAATTTGTGGAATGACTTA+TGG | 0.255450 | 1_3:-33951570 | None:intergenic |
| TCATGCTGCAACAACATTAA+TGG | 0.260925 | 1_3:+33951766 | Msa0115180:CDS |
| TTTGTAGTCTTTCTCCTTGT+AGG | 0.272571 | 1_3:-33951638 | None:intergenic |
| AGGACAACTAACAGGTTTCT+TGG | 0.284232 | 1_3:+33953964 | Msa0115180:CDS |
| TTCATGATTGGAACTTGAAT+TGG | 0.293082 | 1_3:-33954452 | None:intergenic |
| ATATTCCAGTTGTTGTAATT+AGG | 0.296250 | 1_3:+33953762 | Msa0115180:CDS |
| GAGTTTAGATTTGATGTAAA+AGG | 0.298795 | 1_3:+33955070 | Msa0115180:CDS |
| ATGCAATCACCAATACTAAA+TGG | 0.306172 | 1_3:-33953167 | None:intergenic |
| ACTTTAAATGAACCATTTCC+TGG | 0.306489 | 1_3:+33953803 | Msa0115180:CDS |
| TTGATACATCTTCCCCTTTG+AGG | 0.323986 | 1_3:-33954555 | None:intergenic |
| TTACCATAGCAAAGAACTAT+TGG | 0.324080 | 1_3:-33953941 | None:intergenic |
| GTTAAGGATATTGTCCCTTA+TGG | 0.331245 | 1_3:+33951842 | Msa0115180:CDS |
| TTCTTATTGAGAAGATTCTA+AGG | 0.334914 | 1_3:+33952393 | Msa0115180:CDS |
| CTTCCACCATAAAATGTATA+TGG | 0.342594 | 1_3:-33954641 | None:intergenic |
| GGTTTCTTGGTTGATCCTAA+TGG | 0.345570 | 1_3:+33953977 | Msa0115180:CDS |
| TAACCACAGATGAAGCAATT+TGG | 0.345856 | 1_3:-33954349 | None:intergenic |
| CTCTTTCTTCATGTTTCAAC+AGG | 0.352774 | 1_3:+33952991 | Msa0115180:CDS |
| CTATATAGGGCTAGAAGATA+TGG | 0.357609 | 1_3:+33953674 | Msa0115180:intron |
| CTGGGTGGATGGAAGGAAAT+AGG | 0.357880 | 1_3:+33953822 | Msa0115180:CDS |
| CCTTCCATCCACCCAGGAAA+TGG | 0.359752 | 1_3:-33953815 | None:intergenic |
| CTTGGCCTAATTACAACAAC+TGG | 0.362282 | 1_3:-33953767 | None:intergenic |
| TCAGACAGATATTGTGGTTA+AGG | 0.362816 | 1_3:+33951826 | Msa0115180:CDS |
| AGCAAGCTAGTTCCTATTGT+TGG | 0.363034 | 1_3:+33952675 | Msa0115180:CDS |
| GATATTTGTGAAACTAATCT+TGG | 0.367816 | 1_3:+33952699 | Msa0115180:CDS |
| GGCATTGCCAAATTTCTTAG+AGG | 0.372074 | 1_3:+33951911 | Msa0115180:CDS |
| TCGAGGGCCATGTCGCCTTA+TGG | 0.384228 | 1_3:+33952939 | Msa0115180:CDS |
| TTGATGTAAAAGGCATAGAT+TGG | 0.386398 | 1_3:+33955080 | Msa0115180:CDS |
| ACAAAGGCAAGGTGGAATAA+TGG | 0.387517 | 1_3:+33953139 | Msa0115180:CDS |
| TAAGGTCTTGGAAGACTAAA+GGG | 0.388547 | 1_3:-33954373 | None:intergenic |
| TATGGTAAAGGACAACTAAC+AGG | 0.389183 | 1_3:+33953956 | Msa0115180:CDS |
| TAATTTGTAGCTTATGTCAA+TGG | 0.393207 | 1_3:+33953116 | Msa0115180:intron |
| GACTGAAAGATCATCATCAT+TGG | 0.403904 | 1_3:+33951733 | Msa0115180:CDS |
| AACTAGCTTGCTCAACATAA+AGG | 0.405940 | 1_3:-33952664 | None:intergenic |
| ATGTTCATATACCAGGTCTA+AGG | 0.414217 | 1_3:+33955119 | Msa0115180:CDS |
| ACATTAATTGGACTTGATGA+TGG | 0.417607 | 1_3:+33951884 | Msa0115180:CDS |
| ATTGGACTTGATGATGGAAT+TGG | 0.418242 | 1_3:+33951890 | Msa0115180:CDS |
| GAGCTAAACAACTTCATGAT+TGG | 0.426422 | 1_3:-33954464 | None:intergenic |
| TCACAAATATCTCCAACAAT+AGG | 0.426552 | 1_3:-33952687 | None:intergenic |
| AAATGATGATTGACAAATTG+AGG | 0.427865 | 1_3:+33953735 | Msa0115180:CDS |
| AGAGAAGCCTTGTAAGGTCT+TGG | 0.429057 | 1_3:-33954385 | None:intergenic |
| TAGTCTTCCAAGACCTTACA+AGG | 0.433178 | 1_3:+33954378 | Msa0115180:CDS |
| GTAAGGTCTTGGAAGACTAA+AGG | 0.449324 | 1_3:-33954374 | None:intergenic |
| TCTTGGAACTACTAGGATGA+TGG | 0.452089 | 1_3:+33953916 | Msa0115180:intron |
| GTAGTTGTTGGTCCACCATA+AGG | 0.452984 | 1_3:-33951857 | None:intergenic |
| TCCAATGTAGGAATGTGTTT+TGG | 0.463080 | 1_3:-33953221 | None:intergenic |
| ACCACATCAAGGACTCCATT+AGG | 0.463331 | 1_3:-33953992 | None:intergenic |
| ATGGAAAGACCATTTAGTAT+TGG | 0.464268 | 1_3:+33953158 | Msa0115180:CDS |
| ATTAATGTAGTAGTAGTTGT+TGG | 0.469485 | 1_3:-33951869 | None:intergenic |
| ATAGTTCTTTGCTATGGTAA+AGG | 0.472934 | 1_3:+33953944 | Msa0115180:CDS |
| TGAAGGAGATGGGTCTAGAG+AGG | 0.480617 | 1_3:+33953315 | Msa0115180:CDS |
| AAGAATTCTCTGGTCACCTA+TGG | 0.482868 | 1_3:+33954492 | Msa0115180:CDS |
| AATGATGATTGACAAATTGA+GGG | 0.491248 | 1_3:+33953736 | Msa0115180:CDS |
| GCAACTGGATTTCTAGCAAA+AGG | 0.493149 | 1_3:+33951956 | Msa0115180:CDS |
| AGCTCATCAGAAGAATTCTC+TGG | 0.493246 | 1_3:+33954482 | Msa0115180:CDS |
| CCATTTCCTGGGTGGATGGA+AGG | 0.504005 | 1_3:+33953815 | Msa0115180:CDS |
| TCTAAGGAGATACGTGATGA+AGG | 0.508861 | 1_3:+33955135 | Msa0115180:CDS |
| AGATGTCTTAAACAAATCCA+TGG | 0.509786 | 1_3:+33952627 | Msa0115180:CDS |
| TCTGAATAGCATCTCTCCAT+AGG | 0.511599 | 1_3:-33954508 | None:intergenic |
| ATCACCATGCATTGACTCAA+AGG | 0.512042 | 1_3:+33954424 | Msa0115180:CDS |
| GAAAAGTGGTTTGAATGCAA+TGG | 0.512049 | 1_3:+33954529 | Msa0115180:CDS |
| AGATACGTGATGAAGGGAAG+AGG | 0.514296 | 1_3:+33955142 | Msa0115180:CDS |
| GCAACAACATTAATGGATGC+TGG | 0.516023 | 1_3:+33951773 | Msa0115180:CDS |
| AATGCAATGGCATCCTCAAA+GGG | 0.518794 | 1_3:+33954542 | Msa0115180:CDS |
| GTTCGTAGAGAAGCCTTGTA+AGG | 0.524507 | 1_3:-33954391 | None:intergenic |
| CAAGAGAGAAACTTATACCT+GGG | 0.525175 | 1_3:+33953192 | Msa0115180:CDS |
| GAATGCAATGGCATCCTCAA+AGG | 0.525195 | 1_3:+33954541 | Msa0115180:CDS |
| AGCTCAAAAGATGAAGGAGA+TGG | 0.526880 | 1_3:+33953304 | Msa0115180:CDS |
| TTTACTAGCTCAAAAGATGA+AGG | 0.534828 | 1_3:+33953298 | Msa0115180:CDS |
| GATCCAATAGTTCTTTGCTA+TGG | 0.535351 | 1_3:+33953938 | Msa0115180:CDS |
| ATCTCATGTTATTGCTGATG+AGG | 0.538384 | 1_3:+33952737 | Msa0115180:CDS |
| ACATGTCTGAAGAAGAAAAG+AGG | 0.539612 | 1_3:+33955047 | Msa0115180:CDS |
| TGAACCATTTCCTGGGTGGA+TGG | 0.540169 | 1_3:+33953811 | Msa0115180:CDS |
| TATGTGTTCACAAAGGCAAT+GGG | 0.540758 | 1_3:+33953710 | Msa0115180:CDS |
| AGTGGAGCAAGCAAAGTACT+TGG | 0.541589 | 1_3:+33954604 | Msa0115180:CDS |
| AAGGATATTGTCCCTTATGG+TGG | 0.543115 | 1_3:+33951845 | Msa0115180:CDS |
| TCACCATGCATTGACTCAAA+GGG | 0.547672 | 1_3:+33954425 | Msa0115180:CDS |
| CAAGAATAAGCAAGCTGCAA+TGG | 0.549669 | 1_3:+33952457 | Msa0115180:CDS |
| GCTTGCTCAACATAAAGGCT+TGG | 0.550415 | 1_3:-33952659 | None:intergenic |
| ACCAAAACACATTCCTACAT+TGG | 0.550920 | 1_3:+33953220 | Msa0115180:CDS |
| AGAGATGCTATTCAGAAAAG+TGG | 0.551199 | 1_3:+33954515 | Msa0115180:CDS |
| CTTTAAATGAACCATTTCCT+GGG | 0.552608 | 1_3:+33953804 | Msa0115180:CDS |
| GCAAGAGAGAAACTTATACC+TGG | 0.558150 | 1_3:+33953191 | Msa0115180:CDS |
| TAATGCAACCCTAGCAGCAA+TGG | 0.564496 | 1_3:+33954286 | Msa0115180:CDS |
| GCATTGCCAAATTTCTTAGA+GGG | 0.564711 | 1_3:+33951912 | Msa0115180:CDS |
| TTATGTGTTCACAAAGGCAA+TGG | 0.566227 | 1_3:+33953709 | Msa0115180:CDS |
| AATATAGGTACCAGCTGACA+TGG | 0.571637 | 1_3:+33954259 | Msa0115180:intron |
| AAACATTTGTAGAAAATCAG+TGG | 0.573195 | 1_3:+33954586 | Msa0115180:CDS |
| AAAGTGCTTTCAATAACACT+TGG | 0.574171 | 1_3:-33953785 | None:intergenic |
| ATCACTAATGTTCATATACC+AGG | 0.582853 | 1_3:+33955112 | Msa0115180:CDS |
| TAGTTGTTGGTCCACCATAA+GGG | 0.582864 | 1_3:-33951856 | None:intergenic |
| GCATTAACAACCATGTCAGC+TGG | 0.586114 | 1_3:-33954269 | None:intergenic |
| CATGTCTGAAGAAGAAAAGA+GGG | 0.586886 | 1_3:+33955048 | Msa0115180:CDS |
| TAGTGTCACTTACCACATCA+AGG | 0.592306 | 1_3:-33954003 | None:intergenic |
| TCTAAGGACAGAACCTGATG+TGG | 0.593162 | 1_3:+33952409 | Msa0115180:CDS |
| ATGATTGTTATATTCCTACA+AGG | 0.597283 | 1_3:+33951624 | Msa0115180:CDS |
| CTAGCAGCAATGGCAAAACA+TGG | 0.604867 | 1_3:+33954296 | Msa0115180:CDS |
| GCTCAAAAGATGAAGGAGAT+GGG | 0.607034 | 1_3:+33953305 | Msa0115180:CDS |
| TTTCCCTTTGAGTCAATGCA+TGG | 0.614016 | 1_3:-33954428 | None:intergenic |
| CTAAGGAGATACGTGATGAA+GGG | 0.616222 | 1_3:+33955136 | Msa0115180:CDS |
| TAGCTTATGTCAATGGACAA+AGG | 0.620512 | 1_3:+33953123 | Msa0115180:intron |
| ATCACGTATCTCCTTAGACC+TGG | 0.624666 | 1_3:-33955130 | None:intergenic |
| TAAATGAACCATTTCCTGGG+TGG | 0.627098 | 1_3:+33953807 | Msa0115180:CDS |
| GCGATCGCCATAAGGCGACA+TGG | 0.630978 | 1_3:-33952946 | None:intergenic |
| CTAAGGACAGAACCTGATGT+GGG | 0.632559 | 1_3:+33952410 | Msa0115180:CDS |
| TATGTCAATGGACAAAGGCA+AGG | 0.635238 | 1_3:+33953128 | Msa0115180:CDS |
| GTCAATGGACAAAGGCAAGG+TGG | 0.643620 | 1_3:+33953131 | Msa0115180:CDS |
| ATAGGGCTAGAAGATATGGA+TGG | 0.646805 | 1_3:+33953678 | Msa0115180:intron |
| CTATTTCCTTCCATCCACCC+AGG | 0.649175 | 1_3:-33953821 | None:intergenic |
| GCAATTGACATAAACACTCG+AGG | 0.652203 | 1_3:+33952922 | Msa0115180:CDS |
| CAATTGACATAAACACTCGA+GGG | 0.675445 | 1_3:+33952923 | Msa0115180:CDS |
| GTACCAAATTGCTTCATCTG+TGG | 0.681732 | 1_3:+33954346 | Msa0115180:CDS |
| AAGAGAGAAACTTATACCTG+GGG | 0.694268 | 1_3:+33953193 | Msa0115180:CDS |
| ATGCAATGGCATCCTCAAAG+GGG | 0.715731 | 1_3:+33954543 | Msa0115180:CDS |
| AGATACTTATGTGTTCACAA+AGG | 0.719635 | 1_3:+33953703 | Msa0115180:CDS |
| TCCTAATGGAGTCCTTGATG+TGG | 0.722130 | 1_3:+33953991 | Msa0115180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAATTCTTTAAATGT+TGG | + | chr1_3:33952038-33952057 | Msa0115180:intron | 10.0% |
| !! | TAAACTAAATGTAATTAAAA+AGG | - | chr1_3:33952852-33952871 | None:intergenic | 10.0% |
| !!! | TTAATTTGATTTTTCTATAT+AGG | + | chr1_3:33953660-33953679 | Msa0115180:intron | 10.0% |
| !!! | TAATTTGATTTTTCTATATA+GGG | + | chr1_3:33953661-33953680 | Msa0115180:intron | 10.0% |
| !!! | TTTAATAGTTTCTTTTTTTA+GGG | - | chr1_3:33954944-33954963 | None:intergenic | 10.0% |
| !!! | TATTTTAGAAAGTAAATTTG+TGG | - | chr1_3:33951585-33951604 | None:intergenic | 15.0% |
| !! | CAAATTATCATAGAATATTT+AGG | - | chr1_3:33951995-33952014 | None:intergenic | 15.0% |
| !! | AATAATAACACTAGTAAAAA+TGG | + | chr1_3:33953017-33953036 | Msa0115180:intron | 15.0% |
| !!! | AACAAAACTTTTGTTATTTT+TGG | - | chr1_3:33953094-33953113 | None:intergenic | 15.0% |
| !!! | GTTTAATAGTTTCTTTTTTT+AGG | - | chr1_3:33954945-33954964 | None:intergenic | 15.0% |
| !!! | ATATAACAATCATTGTTTTG+AGG | - | chr1_3:33951617-33951636 | None:intergenic | 20.0% |
| !! | TCTTAACTTAATGAAAATCA+TGG | - | chr1_3:33952094-33952113 | None:intergenic | 20.0% |
| !! | GTTTACTATTATGAAAATCA+TGG | + | chr1_3:33952157-33952176 | Msa0115180:intron | 20.0% |
| !!! | AAATATGATTTTGAAGAACA+AGG | + | chr1_3:33953259-33953278 | Msa0115180:CDS | 20.0% |
| !!! | AATATGATTTTGAAGAACAA+GGG | + | chr1_3:33953260-33953279 | Msa0115180:CDS | 20.0% |
| !!! | TATGAATATTCTAGAATTTG+TGG | - | chr1_3:33953395-33953414 | None:intergenic | 20.0% |
| !!! | AAACATTTTTTTCTTCTTCT+TGG | + | chr1_3:33953899-33953918 | Msa0115180:intron | 20.0% |
| !! | TCACATAATTCTATGAAATT+CGG | + | chr1_3:33954038-33954057 | Msa0115180:intron | 20.0% |
| !!! | CTATTTAACTTATGAGTATA+TGG | - | chr1_3:33954162-33954181 | None:intergenic | 20.0% |
| !! | CATATACTCATAAGTTAAAT+AGG | + | chr1_3:33954160-33954179 | Msa0115180:intron | 20.0% |
| !!! | TGTATATGGTTCATAAATTT+TGG | - | chr1_3:33954630-33954649 | None:intergenic | 20.0% |
| !!! | TATGAACCATATACATTTTA+TGG | + | chr1_3:33954635-33954654 | Msa0115180:CDS | 20.0% |
| !! | CTAAAAATAAACTTAAGAGA+GGG | + | chr1_3:33954903-33954922 | Msa0115180:intron | 20.0% |
| !! | TAAAAATAAACTTAAGAGAG+GGG | + | chr1_3:33954904-33954923 | Msa0115180:intron | 20.0% |
| ! | TAAATTTGTGGAATGACTTA+TGG | - | chr1_3:33951573-33951592 | None:intergenic | 25.0% |
| ! | ATGATTGTTATATTCCTACA+AGG | + | chr1_3:33951624-33951643 | Msa0115180:CDS | 25.0% |
| !!! | AATTTGGTTTTGTCACAAAA+TGG | + | chr1_3:33951797-33951816 | Msa0115180:CDS | 25.0% |
| ! | TAAAAATCAGACAGATATTG+TGG | + | chr1_3:33951820-33951839 | Msa0115180:CDS | 25.0% |
| ! | ATTAATGTAGTAGTAGTTGT+TGG | - | chr1_3:33951872-33951891 | None:intergenic | 25.0% |
| ! | ACAACTACTACTACATTAAT+TGG | + | chr1_3:33951872-33951891 | Msa0115180:CDS | 25.0% |
| ! | TTCTTATTGAGAAGATTCTA+AGG | + | chr1_3:33952393-33952412 | Msa0115180:CDS | 25.0% |
| ! | AAAAATGTATCTCTTGATCA+AGG | + | chr1_3:33952433-33952452 | Msa0115180:CDS | 25.0% |
| ! | TTTGTATTTGTCAAAGTTCA+TGG | + | chr1_3:33952527-33952546 | Msa0115180:intron | 25.0% |
| ! | GATATTTGTGAAACTAATCT+TGG | + | chr1_3:33952699-33952718 | Msa0115180:CDS | 25.0% |
| !! | CTAATACAACTTTTGATGAA+AGG | + | chr1_3:33952784-33952803 | Msa0115180:CDS | 25.0% |
| ! | CATGAGAATTTATCATTTGA+TGG | - | chr1_3:33952825-33952844 | None:intergenic | 25.0% |
| ! | AGTCATATATACTTATCACA+TGG | - | chr1_3:33953059-33953078 | None:intergenic | 25.0% |
| !! | TAATTTGTAGCTTATGTCAA+TGG | + | chr1_3:33953116-33953135 | Msa0115180:intron | 25.0% |
| ! | TAATTCATAATTCGATCAGA+AGG | - | chr1_3:33953498-33953517 | None:intergenic | 25.0% |
| ! | CAGAATATTCACTTAATTGA+TGG | - | chr1_3:33953622-33953641 | None:intergenic | 25.0% |
| ! | AAATGATGATTGACAAATTG+AGG | + | chr1_3:33953735-33953754 | Msa0115180:CDS | 25.0% |
| ! | AATGATGATTGACAAATTGA+GGG | + | chr1_3:33953736-33953755 | Msa0115180:CDS | 25.0% |
| ! | ATATTCCAGTTGTTGTAATT+AGG | + | chr1_3:33953762-33953781 | Msa0115180:CDS | 25.0% |
| !!! | GTCACAAACTTTTTCTTATA+AGG | + | chr1_3:33953848-33953867 | Msa0115180:intron | 25.0% |
| !!! | TTAGTTCTATCACACAAATT+AGG | - | chr1_3:33953881-33953900 | None:intergenic | 25.0% |
| ! | AAACATTTGTAGAAAATCAG+TGG | + | chr1_3:33954586-33954605 | Msa0115180:CDS | 25.0% |
| ! | TTCAATGTAATTACAAGTGT+CGG | + | chr1_3:33954792-33954811 | Msa0115180:intron | 25.0% |
| ! | GCTAAAAATAAACTTAAGAG+AGG | + | chr1_3:33954902-33954921 | Msa0115180:intron | 25.0% |
| !!! | ATAGTTTCTTTTTTTAGGGT+GGG | - | chr1_3:33954940-33954959 | None:intergenic | 25.0% |
| !!! | AATAGTTTCTTTTTTTAGGG+TGG | - | chr1_3:33954941-33954960 | None:intergenic | 25.0% |
| ! | GAGTTTAGATTTGATGTAAA+AGG | + | chr1_3:33955070-33955089 | Msa0115180:CDS | 25.0% |
| ! | ATTAATGGATGCTGGAAATT+TGG | + | chr1_3:33951781-33951800 | Msa0115180:CDS | 30.0% |
| ACATTAATTGGACTTGATGA+TGG | + | chr1_3:33951884-33951903 | Msa0115180:CDS | 30.0% | |
| AGAATCTTCTCAATAAGAAC+TGG | - | chr1_3:33952392-33952411 | None:intergenic | 30.0% | |
| AGATGTCTTAAACAAATCCA+TGG | + | chr1_3:33952627-33952646 | Msa0115180:CDS | 30.0% | |
| TCACAAATATCTCCAACAAT+AGG | - | chr1_3:33952690-33952709 | None:intergenic | 30.0% | |
| ATGGAAAGACCATTTAGTAT+TGG | + | chr1_3:33953158-33953177 | Msa0115180:CDS | 30.0% | |
| ATGCAATCACCAATACTAAA+TGG | - | chr1_3:33953170-33953189 | None:intergenic | 30.0% | |
| ! | TCATTTTCAATGTCCAATGT+AGG | - | chr1_3:33953236-33953255 | None:intergenic | 30.0% |
| TTTACTAGCTCAAAAGATGA+AGG | + | chr1_3:33953298-33953317 | Msa0115180:CDS | 30.0% | |
| AGTGAGTCATGTAAAACATA+GGG | - | chr1_3:33953353-33953372 | None:intergenic | 30.0% | |
| TAGTGAGTCATGTAAAACAT+AGG | - | chr1_3:33953354-33953373 | None:intergenic | 30.0% | |
| TACAACTACGATTCAAACTA+AGG | - | chr1_3:33953450-33953469 | None:intergenic | 30.0% | |
| AGATACTTATGTGTTCACAA+AGG | + | chr1_3:33953703-33953722 | Msa0115180:CDS | 30.0% | |
| ! | AAAGTGCTTTCAATAACACT+TGG | - | chr1_3:33953788-33953807 | None:intergenic | 30.0% |
| ACTTTAAATGAACCATTTCC+TGG | + | chr1_3:33953803-33953822 | Msa0115180:CDS | 30.0% | |
| CTTTAAATGAACCATTTCCT+GGG | + | chr1_3:33953804-33953823 | Msa0115180:CDS | 30.0% | |
| TTACCATAGCAAAGAACTAT+TGG | - | chr1_3:33953944-33953963 | None:intergenic | 30.0% | |
| ! | ATAGTTCTTTGCTATGGTAA+AGG | + | chr1_3:33953944-33953963 | Msa0115180:CDS | 30.0% |
| TACATAACCAAACATTTCCT+AGG | + | chr1_3:33954073-33954092 | Msa0115180:intron | 30.0% | |
| AGTATATGGTCTATGAAGTT+CGG | - | chr1_3:33954148-33954167 | None:intergenic | 30.0% | |
| ! | ACATTACTTGCTCTGAATAT+AGG | + | chr1_3:33954244-33954263 | Msa0115180:intron | 30.0% |
| TTCATGATTGGAACTTGAAT+TGG | - | chr1_3:33954455-33954474 | None:intergenic | 30.0% | |
| ! | GAACCATATACATTTTATGG+TGG | + | chr1_3:33954638-33954657 | Msa0115180:CDS | 30.0% |
| CTTCCACCATAAAATGTATA+TGG | - | chr1_3:33954644-33954663 | None:intergenic | 30.0% | |
| !! | CATATACATTTTATGGTGGA+AGG | + | chr1_3:33954642-33954661 | Msa0115180:CDS | 30.0% |
| GAAACAAATAAATGTGATGC+AGG | + | chr1_3:33954990-33955009 | Msa0115180:intron | 30.0% | |
| ! | TTGATGTAAAAGGCATAGAT+TGG | + | chr1_3:33955080-33955099 | Msa0115180:CDS | 30.0% |
| ATCACTAATGTTCATATACC+AGG | + | chr1_3:33955112-33955131 | Msa0115180:CDS | 30.0% | |
| TTTGTAGTCTTTCTCCTTGT+AGG | - | chr1_3:33951641-33951660 | None:intergenic | 35.0% | |
| ! | GTTGTTGTGTTTTGTCATCA+AGG | + | chr1_3:33951665-33951684 | Msa0115180:CDS | 35.0% |
| GACTGAAAGATCATCATCAT+TGG | + | chr1_3:33951733-33951752 | Msa0115180:CDS | 35.0% | |
| TCATGCTGCAACAACATTAA+TGG | + | chr1_3:33951766-33951785 | Msa0115180:CDS | 35.0% | |
| TCAGACAGATATTGTGGTTA+AGG | + | chr1_3:33951826-33951845 | Msa0115180:CDS | 35.0% | |
| GTTAAGGATATTGTCCCTTA+TGG | + | chr1_3:33951842-33951861 | Msa0115180:CDS | 35.0% | |
| !! | ATTGGACTTGATGATGGAAT+TGG | + | chr1_3:33951890-33951909 | Msa0115180:CDS | 35.0% |
| GCATTGCCAAATTTCTTAGA+GGG | + | chr1_3:33951912-33951931 | Msa0115180:CDS | 35.0% | |
| ! | CTTCTTCCCTCTAAGAAATT+TGG | - | chr1_3:33951921-33951940 | None:intergenic | 35.0% |
| !!! | GGGAAGAAGTTTTTTGTTAC+TGG | + | chr1_3:33951932-33951951 | Msa0115180:CDS | 35.0% |
| !!! | TTTTTTGTTACTGGAGCAAC+TGG | + | chr1_3:33951941-33951960 | Msa0115180:CDS | 35.0% |
| TGGTTACAAGCAACTCAAAT+TGG | + | chr1_3:33952177-33952196 | Msa0115180:intron | 35.0% | |
| ! | AGATACATTTTTCCCACATC+AGG | - | chr1_3:33952425-33952444 | None:intergenic | 35.0% |
| !! | AACTAGCTTGCTCAACATAA+AGG | - | chr1_3:33952667-33952686 | None:intergenic | 35.0% |
| ATCTCATGTTATTGCTGATG+AGG | + | chr1_3:33952737-33952756 | Msa0115180:CDS | 35.0% | |
| CAATTGACATAAACACTCGA+GGG | + | chr1_3:33952923-33952942 | Msa0115180:CDS | 35.0% | |
| CTCTTTCTTCATGTTTCAAC+AGG | + | chr1_3:33952991-33953010 | Msa0115180:CDS | 35.0% | |
| TAGCTTATGTCAATGGACAA+AGG | + | chr1_3:33953123-33953142 | Msa0115180:intron | 35.0% | |
| CAAGAGAGAAACTTATACCT+GGG | + | chr1_3:33953192-33953211 | Msa0115180:CDS | 35.0% | |
| AAGAGAGAAACTTATACCTG+GGG | + | chr1_3:33953193-33953212 | Msa0115180:CDS | 35.0% | |
| !! | AATGTAGGAATGTGTTTTGG+TGG | - | chr1_3:33953221-33953240 | None:intergenic | 35.0% |
| ACCAAAACACATTCCTACAT+TGG | + | chr1_3:33953220-33953239 | Msa0115180:CDS | 35.0% | |
| ! | TCCAATGTAGGAATGTGTTT+TGG | - | chr1_3:33953224-33953243 | None:intergenic | 35.0% |
| GATTCAAACTAAGGCCTTTA+GGG | - | chr1_3:33953441-33953460 | None:intergenic | 35.0% | |
| !! | GTTTTAACCATCTGATTTGC+AGG | - | chr1_3:33953536-33953555 | None:intergenic | 35.0% |
| CTATATAGGGCTAGAAGATA+TGG | + | chr1_3:33953674-33953693 | Msa0115180:intron | 35.0% | |
| TTATGTGTTCACAAAGGCAA+TGG | + | chr1_3:33953709-33953728 | Msa0115180:CDS | 35.0% | |
| TATGTGTTCACAAAGGCAAT+GGG | + | chr1_3:33953710-33953729 | Msa0115180:CDS | 35.0% | |
| TTCTTCTTCTTGGAACTACT+AGG | + | chr1_3:33953909-33953928 | Msa0115180:intron | 35.0% | |
| GATCCAATAGTTCTTTGCTA+TGG | + | chr1_3:33953938-33953957 | Msa0115180:CDS | 35.0% | |
| TATGGTAAAGGACAACTAAC+AGG | + | chr1_3:33953956-33953975 | Msa0115180:CDS | 35.0% | |
| TGTTACTCCTAGGAAATGTT+TGG | - | chr1_3:33954083-33954102 | None:intergenic | 35.0% | |
| AAGTTCGGATACATCGAAAT+GGG | - | chr1_3:33954116-33954135 | None:intergenic | 35.0% | |
| ! | GTTCGGATACATTTGAAGTT+CGG | - | chr1_3:33954131-33954150 | None:intergenic | 35.0% |
| !!! | AATTCTCGCACTTTTTTTCG+TGG | + | chr1_3:33954197-33954216 | Msa0115180:intron | 35.0% |
| TAACCACAGATGAAGCAATT+TGG | - | chr1_3:33954352-33954371 | None:intergenic | 35.0% | |
| TAAGGTCTTGGAAGACTAAA+GGG | - | chr1_3:33954376-33954395 | None:intergenic | 35.0% | |
| GAGCTAAACAACTTCATGAT+TGG | - | chr1_3:33954467-33954486 | None:intergenic | 35.0% | |
| AGAGATGCTATTCAGAAAAG+TGG | + | chr1_3:33954515-33954534 | Msa0115180:CDS | 35.0% | |
| GAAAAGTGGTTTGAATGCAA+TGG | + | chr1_3:33954529-33954548 | Msa0115180:CDS | 35.0% | |
| ! | TTTTAGCCTCACTAACTCTT+AGG | - | chr1_3:33954889-33954908 | None:intergenic | 35.0% |
| AAATAAACTTAAGAGAGGGG+AGG | + | chr1_3:33954907-33954926 | Msa0115180:intron | 35.0% | |
| ACATGTCTGAAGAAGAAAAG+AGG | + | chr1_3:33955047-33955066 | Msa0115180:CDS | 35.0% | |
| CATGTCTGAAGAAGAAAAGA+GGG | + | chr1_3:33955048-33955067 | Msa0115180:CDS | 35.0% | |
| ATGTTCATATACCAGGTCTA+AGG | + | chr1_3:33955119-33955138 | Msa0115180:CDS | 35.0% | |
| ! | GTTGTGTTTTGTCATCAAGG+TGG | + | chr1_3:33951668-33951687 | Msa0115180:CDS | 40.0% |
| ! | GCAACAACATTAATGGATGC+TGG | + | chr1_3:33951773-33951792 | Msa0115180:CDS | 40.0% |
| AAGGATATTGTCCCTTATGG+TGG | + | chr1_3:33951845-33951864 | Msa0115180:CDS | 40.0% | |
| TAGTTGTTGGTCCACCATAA+GGG | - | chr1_3:33951859-33951878 | None:intergenic | 40.0% | |
| GGCATTGCCAAATTTCTTAG+AGG | + | chr1_3:33951911-33951930 | Msa0115180:CDS | 40.0% | |
| !! | GCAACTGGATTTCTAGCAAA+AGG | + | chr1_3:33951956-33951975 | Msa0115180:CDS | 40.0% |
| ! | CATTGCAGCTTGCTTATTCT+TGG | - | chr1_3:33952459-33952478 | None:intergenic | 40.0% |
| CAAGAATAAGCAAGCTGCAA+TGG | + | chr1_3:33952457-33952476 | Msa0115180:CDS | 40.0% | |
| !! | AGGCTTGGTATGATTTTCCA+TGG | - | chr1_3:33952647-33952666 | None:intergenic | 40.0% |
| AGCAAGCTAGTTCCTATTGT+TGG | + | chr1_3:33952675-33952694 | Msa0115180:CDS | 40.0% | |
| GCAATTGACATAAACACTCG+AGG | + | chr1_3:33952922-33952941 | Msa0115180:CDS | 40.0% | |
| !!! | ATTTTTTCGCGATCGCCATA+AGG | - | chr1_3:33952957-33952976 | None:intergenic | 40.0% |
| TATGTCAATGGACAAAGGCA+AGG | + | chr1_3:33953128-33953147 | Msa0115180:CDS | 40.0% | |
| ACAAAGGCAAGGTGGAATAA+TGG | + | chr1_3:33953139-33953158 | Msa0115180:CDS | 40.0% | |
| GCAAGAGAGAAACTTATACC+TGG | + | chr1_3:33953191-33953210 | Msa0115180:CDS | 40.0% | |
| AGCTCAAAAGATGAAGGAGA+TGG | + | chr1_3:33953304-33953323 | Msa0115180:CDS | 40.0% | |
| GCTCAAAAGATGAAGGAGAT+GGG | + | chr1_3:33953305-33953324 | Msa0115180:CDS | 40.0% | |
| CGATTCAAACTAAGGCCTTT+AGG | - | chr1_3:33953442-33953461 | None:intergenic | 40.0% | |
| ! | CCATCTGATTTGCAGGTAAA+AGG | - | chr1_3:33953529-33953548 | None:intergenic | 40.0% |
| ! | CCTTTTACCTGCAAATCAGA+TGG | + | chr1_3:33953526-33953545 | Msa0115180:intron | 40.0% |
| ATAGGGCTAGAAGATATGGA+TGG | + | chr1_3:33953678-33953697 | Msa0115180:intron | 40.0% | |
| CTTGGCCTAATTACAACAAC+TGG | - | chr1_3:33953770-33953789 | None:intergenic | 40.0% | |
| TAAATGAACCATTTCCTGGG+TGG | + | chr1_3:33953807-33953826 | Msa0115180:CDS | 40.0% | |
| TCTTGGAACTACTAGGATGA+TGG | + | chr1_3:33953916-33953935 | Msa0115180:intron | 40.0% | |
| AGGACAACTAACAGGTTTCT+TGG | + | chr1_3:33953964-33953983 | Msa0115180:CDS | 40.0% | |
| GGTTTCTTGGTTGATCCTAA+TGG | + | chr1_3:33953977-33953996 | Msa0115180:CDS | 40.0% | |
| !! | TAGTGTCACTTACCACATCA+AGG | - | chr1_3:33954006-33954025 | None:intergenic | 40.0% |
| !! | GAAGTATCGATGTTACTCCT+AGG | - | chr1_3:33954093-33954112 | None:intergenic | 40.0% |
| AGTTCGGATACATCGAAATG+GGG | - | chr1_3:33954115-33954134 | None:intergenic | 40.0% | |
| GAAGTTCGGATACATCGAAA+TGG | - | chr1_3:33954117-33954136 | None:intergenic | 40.0% | |
| AATATAGGTACCAGCTGACA+TGG | + | chr1_3:33954259-33954278 | Msa0115180:intron | 40.0% | |
| ! | ATGTTTTGCCATTGCTGCTA+GGG | - | chr1_3:33954297-33954316 | None:intergenic | 40.0% |
| GTACCAAATTGCTTCATCTG+TGG | + | chr1_3:33954346-33954365 | Msa0115180:CDS | 40.0% | |
| GTAAGGTCTTGGAAGACTAA+AGG | - | chr1_3:33954377-33954396 | None:intergenic | 40.0% | |
| TAGTCTTCCAAGACCTTACA+AGG | + | chr1_3:33954378-33954397 | Msa0115180:CDS | 40.0% | |
| !! | ATCACCATGCATTGACTCAA+AGG | + | chr1_3:33954424-33954443 | Msa0115180:CDS | 40.0% |
| !! | TCACCATGCATTGACTCAAA+GGG | + | chr1_3:33954425-33954444 | Msa0115180:CDS | 40.0% |
| TTTCCCTTTGAGTCAATGCA+TGG | - | chr1_3:33954431-33954450 | None:intergenic | 40.0% | |
| AGCTCATCAGAAGAATTCTC+TGG | + | chr1_3:33954482-33954501 | Msa0115180:CDS | 40.0% | |
| AAGAATTCTCTGGTCACCTA+TGG | + | chr1_3:33954492-33954511 | Msa0115180:CDS | 40.0% | |
| TCTGAATAGCATCTCTCCAT+AGG | - | chr1_3:33954511-33954530 | None:intergenic | 40.0% | |
| AATGCAATGGCATCCTCAAA+GGG | + | chr1_3:33954542-33954561 | Msa0115180:CDS | 40.0% | |
| TTGATACATCTTCCCCTTTG+AGG | - | chr1_3:33954558-33954577 | None:intergenic | 40.0% | |
| !! | GTAATTACAAGTGTCGGTGT+CGG | + | chr1_3:33954798-33954817 | Msa0115180:intron | 40.0% |
| TCTAAGGAGATACGTGATGA+AGG | + | chr1_3:33955135-33955154 | Msa0115180:CDS | 40.0% | |
| CTAAGGAGATACGTGATGAA+GGG | + | chr1_3:33955136-33955155 | Msa0115180:CDS | 40.0% | |
| ! | GTGTTTTGTCATCAAGGTGG+AGG | + | chr1_3:33951671-33951690 | Msa0115180:CDS | 45.0% |
| ! | TTTTGTCATCAAGGTGGAGG+TGG | + | chr1_3:33951674-33951693 | Msa0115180:CDS | 45.0% |
| GTAGTTGTTGGTCCACCATA+AGG | - | chr1_3:33951860-33951879 | None:intergenic | 45.0% | |
| TCTAAGGACAGAACCTGATG+TGG | + | chr1_3:33952409-33952428 | Msa0115180:CDS | 45.0% | |
| CTAAGGACAGAACCTGATGT+GGG | + | chr1_3:33952410-33952429 | Msa0115180:CDS | 45.0% | |
| GCTTGCTCAACATAAAGGCT+TGG | - | chr1_3:33952662-33952681 | None:intergenic | 45.0% | |
| CACTTGACTAACGTCCCTAA+AGG | + | chr1_3:33953424-33953443 | Msa0115180:intron | 45.0% | |
| TCCTAATGGAGTCCTTGATG+TGG | + | chr1_3:33953991-33954010 | Msa0115180:CDS | 45.0% | |
| ACCACATCAAGGACTCCATT+AGG | - | chr1_3:33953995-33954014 | None:intergenic | 45.0% | |
| GCATTAACAACCATGTCAGC+TGG | - | chr1_3:33954272-33954291 | None:intergenic | 45.0% | |
| TAATGCAACCCTAGCAGCAA+TGG | + | chr1_3:33954286-33954305 | Msa0115180:CDS | 45.0% | |
| ! | CATGTTTTGCCATTGCTGCT+AGG | - | chr1_3:33954298-33954317 | None:intergenic | 45.0% |
| CTAGCAGCAATGGCAAAACA+TGG | + | chr1_3:33954296-33954315 | Msa0115180:CDS | 45.0% | |
| ! | AGAGAAGCCTTGTAAGGTCT+TGG | - | chr1_3:33954388-33954407 | None:intergenic | 45.0% |
| ! | GTTCGTAGAGAAGCCTTGTA+AGG | - | chr1_3:33954394-33954413 | None:intergenic | 45.0% |
| GAATGCAATGGCATCCTCAA+AGG | + | chr1_3:33954541-33954560 | Msa0115180:CDS | 45.0% | |
| ATGCAATGGCATCCTCAAAG+GGG | + | chr1_3:33954543-33954562 | Msa0115180:CDS | 45.0% | |
| ! | AGTGGAGCAAGCAAAGTACT+TGG | + | chr1_3:33954604-33954623 | Msa0115180:CDS | 45.0% |
| GAACCACCTACTATGAAGCA+CGG | + | chr1_3:33954708-33954727 | Msa0115180:intron | 45.0% | |
| TATCCGTGCTTCATAGTAGG+TGG | - | chr1_3:33954714-33954733 | None:intergenic | 45.0% | |
| CCTACTATGAAGCACGGATA+CGG | + | chr1_3:33954714-33954733 | Msa0115180:intron | 45.0% | |
| TATGAAGCACGGACATTCCT+CGG | - | chr1_3:33954859-33954878 | None:intergenic | 45.0% | |
| ! | TAGGTGGACTCTATGAAGCA+CGG | - | chr1_3:33954870-33954889 | None:intergenic | 45.0% |
| AGTCCACCTAAGAGTTAGTG+AGG | + | chr1_3:33954880-33954899 | Msa0115180:intron | 45.0% | |
| TAGCCTCACTAACTCTTAGG+TGG | - | chr1_3:33954886-33954905 | None:intergenic | 45.0% | |
| ATCACGTATCTCCTTAGACC+TGG | - | chr1_3:33955133-33955152 | None:intergenic | 45.0% | |
| AGATACGTGATGAAGGGAAG+AGG | + | chr1_3:33955142-33955161 | Msa0115180:CDS | 45.0% | |
| GTCAATGGACAAAGGCAAGG+TGG | + | chr1_3:33953131-33953150 | Msa0115180:CDS | 50.0% | |
| TGAAGGAGATGGGTCTAGAG+AGG | + | chr1_3:33953315-33953334 | Msa0115180:CDS | 50.0% | |
| TGAACCATTTCCTGGGTGGA+TGG | + | chr1_3:33953811-33953830 | Msa0115180:CDS | 50.0% | |
| CTATTTCCTTCCATCCACCC+AGG | - | chr1_3:33953824-33953843 | None:intergenic | 50.0% | |
| CTGGGTGGATGGAAGGAAAT+AGG | + | chr1_3:33953822-33953841 | Msa0115180:CDS | 50.0% | |
| CCGTATCCGTGCTTCATAGT+AGG | - | chr1_3:33954717-33954736 | None:intergenic | 50.0% | |
| ATGAAGCACGGATACGGACA+CGG | + | chr1_3:33954720-33954739 | Msa0115180:intron | 50.0% | |
| !!! | ATGTGTTTTGGTGGCACCCC+AGG | - | chr1_3:33953212-33953231 | None:intergenic | 55.0% |
| CCTTCCATCCACCCAGGAAA+TGG | - | chr1_3:33953818-33953837 | None:intergenic | 55.0% | |
| CCATTTCCTGGGTGGATGGA+AGG | + | chr1_3:33953815-33953834 | Msa0115180:CDS | 55.0% | |
| TGAAGCACGGATACGGACAC+GGG | + | chr1_3:33954721-33954740 | Msa0115180:intron | 55.0% | |
| GATTAGGTGTGTCCCGGTGT+CGG | - | chr1_3:33954837-33954856 | None:intergenic | 55.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+CGG | - | chr1_3:33954843-33954862 | None:intergenic | 55.0% |
| GCACGGACATTCCTCGGATT+AGG | - | chr1_3:33954853-33954872 | None:intergenic | 55.0% | |
| TCGAGGGCCATGTCGCCTTA+TGG | + | chr1_3:33952939-33952958 | Msa0115180:CDS | 60.0% | |
| GCGATCGCCATAAGGCGACA+TGG | - | chr1_3:33952949-33952968 | None:intergenic | 60.0% | |
| TACGGACACGGGACACGACA+CGG | + | chr1_3:33954732-33954751 | Msa0115180:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr1_3:33954821-33954840 | Msa0115180:intron | 60.0% | |
| ACCGGGACACACCTAATCCG+AGG | + | chr1_3:33954839-33954858 | Msa0115180:intron | 60.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr1_3:33954822-33954841 | Msa0115180:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33951557 | 33955180 | 33951557 | ID=Msa0115180;Name=Msa0115180 |
| chr1_3 | mRNA | 33951557 | 33955180 | 33951557 | ID=Msa0115180-mRNA-1;Parent=Msa0115180;Name=Msa0115180-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|9|0|615 |
| chr1_3 | exon | 33951557 | 33951977 | 33951557 | ID=Msa0115180-mRNA-1:exon:10593;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33952393 | 33952496 | 33952393 | ID=Msa0115180-mRNA-1:exon:10594;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33952606 | 33952805 | 33952606 | ID=Msa0115180-mRNA-1:exon:10595;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33952912 | 33953012 | 33952912 | ID=Msa0115180-mRNA-1:exon:10596;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33953126 | 33953336 | 33953126 | ID=Msa0115180-mRNA-1:exon:10597;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33953682 | 33953843 | 33953682 | ID=Msa0115180-mRNA-1:exon:10598;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33953931 | 33954012 | 33953931 | ID=Msa0115180-mRNA-1:exon:10599;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33954266 | 33954663 | 33954266 | ID=Msa0115180-mRNA-1:exon:10600;Parent=Msa0115180-mRNA-1 |
| chr1_3 | exon | 33955012 | 33955180 | 33955012 | ID=Msa0115180-mRNA-1:exon:10601;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33951557 | 33951977 | 33951557 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33952393 | 33952496 | 33952393 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33952606 | 33952805 | 33952606 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33952912 | 33953012 | 33952912 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33953126 | 33953336 | 33953126 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33953682 | 33953843 | 33953682 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33953931 | 33954012 | 33953931 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33954266 | 33954663 | 33954266 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| chr1_3 | CDS | 33955012 | 33955180 | 33955012 | ID=Msa0115180-mRNA-1:cds;Parent=Msa0115180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
