AlfalfaGEDB | Msa1087380

M. sativa cultivar zhongmu-4 / Msa1087380

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0009636 GO:0016491 GO:0030611 GO:0042221 GO:0046685 GO:0050896 GO:0055114 GO:0071722 GO:0098754
PFAM: PF00581.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087380	XP_003593790.1	94.891	137	7	0	1	137	1	137	4.52e-94	277

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087380	sp\|Q8RUD6\|HARC1_ARATH	64.029	139	46	3	1	137	30	166	2.71e-62	191

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087380	G7ILL1	94.891	137	7	0	1	137	1	137	2.16e-94	277

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1087380	-0.800922	1.147927e-48	-8.615850e-47
Msa0004580	Msa1087380	0.806514	7.928576e-50	-8.615850e-47
Msa0004940	Msa1087380	0.806077	9.800024e-50	-8.615850e-47
Msa0004990	Msa1087380	0.803869	2.837544e-49	-8.615850e-47
Msa0008250	Msa1087380	-0.806839	6.767808e-50	-8.615850e-47
Msa0010150	Msa1087380	0.902959	5.682828e-79	-8.615850e-47
Msa0011010	Msa1087380	0.808036	3.773233e-50	-8.615850e-47
Msa0011040	Msa1087380	0.821778	3.369687e-53	-8.615850e-47
Msa0011060	Msa1087380	-0.805262	1.453152e-49	-8.615850e-47
Msa0011100	Msa1087380	-0.802895	4.514767e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087380	MtrunA17_Chr2g0284621	94.891	137	7	0	1	137	1	137	4.16e-98	277
Msa1087380	MtrunA17_Chr4g0020691	86.861	137	18	0	1	137	1	137	6.36e-89	254
Msa1087380	MtrunA17_Chr8g0371681	54.464	112	48	2	10	119	13	123	2.24e-38	126
Msa1087380	MtrunA17_Chr5g0405631	55.556	108	45	2	10	115	30	136	4.38e-35	118
Msa1087380	MtrunA17_Chr5g0406281	40.179	112	66	1	12	123	75	185	4.16e-27	99.4
Msa1087380	MtrunA17_Chr7g0258361	28.448	116	60	2	18	110	55	170	7.72e-11	57.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1087380	AT2G21045.1	64.029	139	46	3	1	137	30	166	2.76e-63	191
Msa1087380	AT5G66170.3	44.628	121	64	2	1	119	5	124	3.09e-33	114
Msa1087380	AT2G17850.1	50.000	112	53	2	10	119	32	142	4.02e-33	114
Msa1087380	AT5G66170.2	44.715	123	63	3	1	119	5	126	9.67e-32	110
Msa1087380	AT5G66040.1	46.296	108	57	1	12	119	10	116	6.61e-28	100
Msa1087380	AT4G35770.1	38.983	118	66	2	11	128	71	182	1.45e-26	98.2
Msa1087380	AT2G17850.3	38.889	144	53	3	10	119	32	174	3.05e-26	97.8
Msa1087380	AT2G17850.2	50.588	85	39	2	10	92	32	115	1.03e-23	89.7
Msa1087380	AT5G66170.1	43.878	98	52	2	1	96	5	101	2.20e-23	89.0
Msa1087380	AT4G35770.3	39.785	93	55	1	11	103	71	162	4.09e-19	79.0

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Find 30 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCTATTACATTCATC+TGG	0.432420	7_3:-68065	Msa1087380:CDS
AGATATTACCTTCTTCTGTT+TGG	0.320745	7_3:+67853	None:intergenic
AGATGAATGTAATAGATCTT+TGG	0.398666	7_3:+68067	None:intergenic
ATTCAGGCTTGCAATAGTGG+AGG	0.624070	7_3:-67546	Msa1087380:intron
ATTTCAACATATTGTGAACA+TGG	0.543412	7_3:-67343	Msa1087380:CDS
CAACATATTGTGAACATGGG+GGG	0.627212	7_3:-67339	Msa1087380:CDS
CATATATATAACATTATGGA+CGG	0.597708	7_3:+67238	None:intergenic
CATTAATAGCATTCTCAACA+TGG	0.531780	7_3:+67889	None:intergenic
CTTCTGTTTGGAACATATAG+GGG	0.513278	7_3:+67865	None:intergenic
GAAAATAATGGACTCCACAA+AGG	0.616932	7_3:-68218	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTACAATTATCTTGATGTG+AGG	-	chr7_3:67419-67438	Msa1087380:intron	30.0%
TGATGTGAGGTAATTAACAA+AGG	-	chr7_3:67432-67451	Msa1087380:intron	30.0%
AAATGATCGAAGAAGGAAAT+TGG	+	chr7_3:67469-67488	None:intergenic	30.0%
GAAAGAAAATGACTTCAGTT+AGG	+	chr7_3:67510-67529	None:intergenic	30.0%
CATTAATAGCATTCTCAACA+TGG	+	chr7_3:67576-67595	None:intergenic	30.0%
TATATGTTCCAAACAGAAGA+AGG	-	chr7_3:67601-67620	Msa1087380:intron	30.0%
AGATATTACCTTCTTCTGTT+TGG	+	chr7_3:67612-67631	None:intergenic	30.0%
ATGTATTCCAAATGATCAAC+AGG	-	chr7_3:67736-67755	Msa1087380:intron	30.0%
TTCAACATATTGTGAACATG+GGG	-	chr7_3:68121-68140	Msa1087380:intron	30.0%
GTTACAATTATCTTGATGTG+AGG	-	chr7_3:67419-67438	Msa1087380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	67251	68233	67251	ID=Msa1087380;Name=Msa1087380
chr7_3	mRNA	67251	68233	67251	ID=Msa1087380-mRNA-1;Parent=Msa1087380;Name=Msa1087380-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0\|0\|0\|0.83\|1\|1\|6\|0\|137
chr7_3	exon	68217	68233	68217	ID=Msa1087380-mRNA-1:exon:38;Parent=Msa1087380-mRNA-1
chr7_3	exon	68044	68124	68044	ID=Msa1087380-mRNA-1:exon:37;Parent=Msa1087380-mRNA-1
chr7_3	exon	67862	67935	67862	ID=Msa1087380-mRNA-1:exon:36;Parent=Msa1087380-mRNA-1
chr7_3	exon	67656	67726	67656	ID=Msa1087380-mRNA-1:exon:35;Parent=Msa1087380-mRNA-1
chr7_3	exon	67509	67562	67509	ID=Msa1087380-mRNA-1:exon:34;Parent=Msa1087380-mRNA-1
chr7_3	exon	67251	67367	67251	ID=Msa1087380-mRNA-1:exon:33;Parent=Msa1087380-mRNA-1
chr7_3	CDS	68217	68233	68217	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1
chr7_3	CDS	68044	68124	68044	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1
chr7_3	CDS	67862	67935	67862	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1
chr7_3	CDS	67656	67726	67656	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1
chr7_3	CDS	67509	67562	67509	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1
chr7_3	CDS	67251	67367	67251	ID=Msa1087380-mRNA-1:cds;Parent=Msa1087380-mRNA-1

Gene Sequence

>Msa1087380

ATGGACTCCACAAAGGATCATCAAAATGTTGTTACCTTAGATGTCCATGCTGCCAAAGATCTATTACATTCATCTGGTTACAATTATCTTGATGTGAGGTCAGTTGAGGAATTCAATAAAAGCCATGTTGAGAATGCTATTAATGTCCCCTATATGTTCCAAACAGAAGAAGGAAGGGTGAAAAATCCTGATTTTGTTAACCAAGTTGCAGCAATATGTAAGAGTGAGGATCACTTAGTTGTGGCTTGCAATAGTGGAGGAAGATCAAGTCAAGCCTGCGTTGATCTCCATGATTCAGGATTTCAACATATTGTGAACATGGGGGGAGGCTATTCTGCGTGGGTGGACGCTGGATTTGCAGGTGATGACAAGCCTGCAGACGAGCTCAAAACAGCTTGCAAGTTCCGTCCATAA

Protein sequence

>Msa1087380

MDSTKDHQNVVTLDVHAAKDLLHSSGYNYLDVRSVEEFNKSHVENAINVPYMFQTEEGRVKNPDFVNQVAAICKSEDHLVVACNSGGRSSQACVDLHDSGFQHIVNMGGGYSAWVDAGFAGDDKPADELKTACKFRP*