Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072380 | XP_013468053.1 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072380 | sp|Q9SJQ9|ALFC6_ARATH | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 645 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072380 | A0A072VVG3 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024890 | Msa0072380 | 0.924737 | 4.718336e-90 | -8.615850e-47 |
| Msa0043120 | Msa0072380 | 0.838992 | 2.067715e-57 | -8.615850e-47 |
| Msa0072380 | Msa0212550 | 0.804888 | 1.740434e-49 | -8.615850e-47 |
| Msa0072380 | Msa0720660 | 0.806735 | 7.120004e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072380 | MtrunA17_Chr1g0179211 | 99.441 | 358 | 2 | 0 | 1 | 358 | 1 | 358 | 0.0 | 731 |
| Msa0072380 | MtrunA17_Chr7g0265821 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 651 |
| Msa0072380 | MtrunA17_Chr5g0429051 | 86.034 | 358 | 50 | 0 | 1 | 358 | 1 | 358 | 0.0 | 637 |
| Msa0072380 | MtrunA17_Chr5g0447091 | 75.698 | 358 | 86 | 1 | 1 | 358 | 1 | 357 | 0.0 | 556 |
| Msa0072380 | MtrunA17_Chr4g0028361 | 55.682 | 352 | 151 | 4 | 8 | 358 | 53 | 400 | 1.73e-131 | 381 |
| Msa0072380 | MtrunA17_Chr4g0035951 | 55.398 | 352 | 152 | 4 | 8 | 358 | 53 | 400 | 8.89e-131 | 379 |
| Msa0072380 | MtrunA17_Chr1g0208981 | 52.809 | 356 | 163 | 4 | 4 | 358 | 40 | 391 | 3.43e-128 | 373 |
| Msa0072380 | MtrunA17_Chr5g0429031 | 84.360 | 211 | 33 | 0 | 1 | 211 | 42 | 252 | 2.00e-125 | 360 |
| Msa0072380 | MtrunA17_Chr4g0035981 | 53.138 | 239 | 107 | 4 | 121 | 358 | 6 | 240 | 1.63e-81 | 248 |
| Msa0072380 | MtrunA17_Chr5g0429021 | 80.916 | 131 | 25 | 0 | 228 | 358 | 1 | 131 | 5.75e-74 | 225 |
| Msa0072380 | MtrunA17_Chr7g0265811 | 69.474 | 95 | 4 | 1 | 112 | 206 | 21 | 90 | 1.29e-36 | 128 |
| Msa0072380 | MtrunA17_Chr4g0035971 | 55.814 | 86 | 38 | 0 | 8 | 93 | 51 | 136 | 3.22e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0072380 | AT2G36460.1 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 645 |
| Msa0072380 | AT3G52930.1 | 86.313 | 358 | 49 | 0 | 1 | 358 | 1 | 358 | 0.0 | 638 |
| Msa0072380 | AT5G03690.2 | 86.072 | 359 | 49 | 1 | 1 | 358 | 1 | 359 | 0.0 | 612 |
| Msa0072380 | AT5G03690.1 | 86.533 | 349 | 46 | 1 | 11 | 358 | 45 | 393 | 0.0 | 598 |
| Msa0072380 | AT4G26530.1 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| Msa0072380 | AT4G26530.3 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| Msa0072380 | AT4G26530.2 | 77.654 | 358 | 80 | 0 | 1 | 358 | 1 | 358 | 0.0 | 572 |
| Msa0072380 | AT4G26520.1 | 72.905 | 358 | 97 | 0 | 1 | 358 | 1 | 358 | 0.0 | 531 |
| Msa0072380 | AT4G26520.3 | 73.034 | 356 | 96 | 0 | 1 | 356 | 1 | 356 | 0.0 | 528 |
| Msa0072380 | AT4G26520.2 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| Msa0072380 | AT4G26520.4 | 72.779 | 349 | 95 | 0 | 10 | 358 | 7 | 355 | 0.0 | 516 |
| Msa0072380 | AT2G36460.3 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.54e-175 | 487 |
| Msa0072380 | AT2G36460.2 | 87.640 | 267 | 33 | 0 | 92 | 358 | 1 | 267 | 5.54e-175 | 487 |
| Msa0072380 | AT5G03690.3 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.17e-163 | 457 |
| Msa0072380 | AT5G03690.4 | 87.266 | 267 | 33 | 1 | 93 | 358 | 1 | 267 | 4.17e-163 | 457 |
| Msa0072380 | AT4G38970.1 | 55.367 | 354 | 153 | 4 | 6 | 358 | 49 | 398 | 4.97e-132 | 383 |
| Msa0072380 | AT2G21330.1 | 54.237 | 354 | 157 | 4 | 6 | 358 | 50 | 399 | 5.62e-129 | 375 |
| Msa0072380 | AT2G01140.1 | 54.830 | 352 | 154 | 4 | 8 | 358 | 44 | 391 | 2.26e-128 | 374 |
| Msa0072380 | AT2G21330.3 | 52.260 | 354 | 154 | 5 | 6 | 358 | 50 | 389 | 7.48e-120 | 352 |
| Msa0072380 | AT4G38970.2 | 55.598 | 259 | 113 | 2 | 6 | 263 | 49 | 306 | 7.89e-94 | 285 |
| Msa0072380 | AT2G21330.2 | 53.668 | 259 | 118 | 2 | 6 | 263 | 50 | 307 | 1.50e-91 | 277 |
Find 112 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTCTGATTGAACTTGTTT+TGG | 0.229590 | 1_2:-45276585 | Msa0072380:three_prime_UTR |
| ATTGCCAATGCTGCTTATAT+TGG | 0.273936 | 1_2:-45278255 | Msa0072380:CDS |
| TGGACTCTTACATTCTCTTA+TGG | 0.280031 | 1_2:-45276815 | Msa0072380:CDS |
| AGCAATGCAGCTTGAGCTTT+AGG | 0.286122 | 1_2:+45276737 | None:intergenic |
| CTCAAGCTGCATTGCTTGTT+AGG | 0.288958 | 1_2:-45276730 | Msa0072380:CDS |
| GATCCTGGTGTAACCATATT+AGG | 0.309736 | 1_2:+45277007 | None:intergenic |
| GAAGAAAGCTGGAGTTCTTC+CGG | 0.325790 | 1_2:-45277404 | Msa0072380:CDS |
| GACAAGGGAGATGGTTCATT+TGG | 0.333091 | 1_2:+45277232 | None:intergenic |
| TCAAGCTGAACTGGCTTGAT+TGG | 0.334716 | 1_2:-45276468 | Msa0072380:three_prime_UTR |
| AGCAGCAAGGATACCCTTTC+CGG | 0.352251 | 1_2:+45278227 | None:intergenic |
| ATAACCTCAGGAGCAACTTT+AGG | 0.366412 | 1_2:+45276977 | None:intergenic |
| TAATGCAATGAACAAACTTA+AGG | 0.371253 | 1_2:-45276849 | Msa0072380:CDS |
| TAAGTTTGTTCATTGCATTA+AGG | 0.377716 | 1_2:+45276852 | None:intergenic |
| CCGGTGCAAGGTTCGCTAAA+TGG | 0.381985 | 1_2:-45277276 | Msa0072380:CDS |
| TTGTGGTAAAGTATCAATAA+TGG | 0.382123 | 1_2:-45276493 | Msa0072380:three_prime_UTR |
| TTCAGAGTCTCTTCATGTTA+AGG | 0.387381 | 1_2:-45276642 | Msa0072380:CDS |
| AGTTGTATGCATCATGGTTA+TGG | 0.395562 | 1_2:-45276562 | Msa0072380:three_prime_UTR |
| GTTGAACTTGCCGGCACAAA+TGG | 0.411220 | 1_2:-45277358 | Msa0072380:CDS |
| GATGAATCTACTGGCACAAT+TGG | 0.412825 | 1_2:-45278204 | Msa0072380:CDS |
| GAACTCTTGTTCACTGCCCC+TGG | 0.414062 | 1_2:-45278123 | Msa0072380:CDS |
| AAGAAAGCTGGAGTTCTTCC+GGG | 0.415915 | 1_2:-45277403 | Msa0072380:CDS |
| AATGCAATGAACAAACTTAA+GGG | 0.427010 | 1_2:-45276848 | Msa0072380:CDS |
| GACCATCATGTTCTTCTTGA+AGG | 0.430660 | 1_2:-45277043 | Msa0072380:CDS |
| AGAATCTCAGGCTCTACAAT+TGG | 0.433301 | 1_2:+45277145 | None:intergenic |
| ATAATGGCTTCAAGCTGAAC+TGG | 0.434807 | 1_2:-45276477 | Msa0072380:three_prime_UTR |
| CAAAGCTCGGACTGTGTGTT+GGG | 0.435174 | 1_2:+45276952 | None:intergenic |
| AAGGGAACCGTTGAACTTGC+CGG | 0.435648 | 1_2:-45277367 | Msa0072380:CDS |
| CATAGAAATGCTAAATTCAA+AGG | 0.443384 | 1_2:+45276264 | None:intergenic |
| CTTGAAAGAAGACATGTTAG+TGG | 0.447312 | 1_2:+45279548 | None:intergenic |
| GCAGCAAGGATACCCTTTCC+GGG | 0.463973 | 1_2:+45278228 | None:intergenic |
| CCCTTGTCAACCTTGATACC+CGG | 0.464933 | 1_2:+45277385 | None:intergenic |
| GCTGCTTATATTGGCTCTCC+CGG | 0.465324 | 1_2:-45278246 | Msa0072380:CDS |
| AGAAACCACAACTCAAGGTT+TGG | 0.472063 | 1_2:-45277335 | Msa0072380:CDS |
| AACTTAAGGGAAAGAAGCCT+TGG | 0.474897 | 1_2:-45276835 | Msa0072380:CDS |
| CAAATACTAATATGTTAAAG+AGG | 0.476989 | 1_2:-45276615 | Msa0072380:exon |
| TGGAGTTCTTCCGGGTATCA+AGG | 0.478690 | 1_2:-45277395 | Msa0072380:CDS |
| ATAGAAATGCTAAATTCAAA+GGG | 0.479079 | 1_2:+45276265 | None:intergenic |
| CGTTCTTGCAACATGTTACA+AGG | 0.482121 | 1_2:-45277074 | Msa0072380:CDS |
| GATCCATCCACTAGAATCTC+AGG | 0.488146 | 1_2:+45277133 | None:intergenic |
| GCCGTCATATGCCAAGAGAA+TGG | 0.489726 | 1_2:-45277175 | Msa0072380:CDS |
| CCAGACAAGAAAACTATAGC+TGG | 0.490239 | 1_2:+45276905 | None:intergenic |
| TTGGAACCAAACCATTCTCT+TGG | 0.499681 | 1_2:+45277164 | None:intergenic |
| AGCTGGAACTGCGGCAGGAA+CGG | 0.501285 | 1_2:+45276922 | None:intergenic |
| ACTTCAGCAAAGTACTCTTA+AGG | 0.501897 | 1_2:-45276786 | Msa0072380:CDS |
| TATATTGGCTCTCCCGGAAA+GGG | 0.502381 | 1_2:-45278240 | Msa0072380:CDS |
| TTCTTCAACACATCCACAAA+GGG | 0.502730 | 1_2:+45277421 | None:intergenic |
| ACTATAGCTGGAACTGCGGC+AGG | 0.507134 | 1_2:+45276917 | None:intergenic |
| GCAAAGTACTCTTAAGGCAT+GGG | 0.512733 | 1_2:-45276780 | Msa0072380:CDS |
| GTGTGTTGGGCTATAACCTC+AGG | 0.515555 | 1_2:+45276965 | None:intergenic |
| CTTGCTGCTGATGAATCTAC+TGG | 0.520412 | 1_2:-45278213 | Msa0072380:CDS |
| TCGTGGATTGACAAGGGAGA+TGG | 0.521733 | 1_2:+45277223 | None:intergenic |
| ACAAAGCTCGGACTGTGTGT+TGG | 0.522609 | 1_2:+45276951 | None:intergenic |
| CTCTTACATTCTCTTATGGA+AGG | 0.525023 | 1_2:-45276811 | Msa0072380:CDS |
| GTGGATGTGTTGAAGAAAGC+TGG | 0.525235 | 1_2:-45277415 | Msa0072380:CDS |
| TGTGGTTTCTCCATTTGTGC+CGG | 0.528303 | 1_2:+45277348 | None:intergenic |
| CTGAGGCAGTCTAAACAACC+AGG | 0.529230 | 1_2:+45278105 | None:intergenic |
| AGCAAAGTACTCTTAAGGCA+TGG | 0.530894 | 1_2:-45276781 | Msa0072380:CDS |
| TAGAGAAGACAAGTAAGAAG+AGG | 0.536198 | 1_2:+45279631 | None:intergenic |
| TAAGAGAATGTAAGAGTCCA+AGG | 0.537565 | 1_2:+45276818 | None:intergenic |
| CTCTCCTAAAGTTGCTCCTG+AGG | 0.537898 | 1_2:-45276981 | Msa0072380:CDS |
| GCAACTCTAGGAACTTATCA+AGG | 0.543212 | 1_2:-45276689 | Msa0072380:CDS |
| TCAATCCACGAAAACGCCTA+CGG | 0.549910 | 1_2:-45277211 | Msa0072380:CDS |
| ACTTTAGGAGAGTCTGATCC+TGG | 0.549951 | 1_2:+45276992 | None:intergenic |
| ATTTGTGCCGGCAAGTTCAA+CGG | 0.550481 | 1_2:+45277360 | None:intergenic |
| TTATATTGGCTCTCCCGGAA+AGG | 0.551511 | 1_2:-45278241 | Msa0072380:CDS |
| AGAGCCAATATAAGCAGCAT+TGG | 0.554374 | 1_2:+45278251 | None:intergenic |
| ACCATTCTCTTGGCATATGA+CGG | 0.555382 | 1_2:+45277174 | None:intergenic |
| GAGCCTGAGATTCTAGTGGA+TGG | 0.555574 | 1_2:-45277136 | Msa0072380:CDS |
| CCATTTAGCGAACCTTGCAC+CGG | 0.555662 | 1_2:+45277276 | None:intergenic |
| TGCAAGAAGTACTATGAAGC+CGG | 0.557100 | 1_2:-45277295 | Msa0072380:CDS |
| TCTTTCAAGAGCAAATATGA+AGG | 0.558115 | 1_2:-45279534 | Msa0072380:intron |
| ACTTTCAGTACATAGAATGA+TGG | 0.558514 | 1_2:+45276219 | None:intergenic |
| GAACGGTTCGCAACAAAGCT+CGG | 0.563519 | 1_2:+45276939 | None:intergenic |
| GCAAATTCAGAAGCAACTCT+AGG | 0.563691 | 1_2:-45276701 | Msa0072380:CDS |
| GTGTATAGGAGTACCCTTTG+TGG | 0.565160 | 1_2:-45277434 | Msa0072380:intron |
| TATCAAGGTAATGCTAACCT+TGG | 0.568421 | 1_2:-45276674 | Msa0072380:CDS |
| TGGCGTGCCGTGCTAAAGAT+CGG | 0.577059 | 1_2:-45277256 | Msa0072380:CDS |
| AATGGAGAAACCACAACTCA+AGG | 0.579845 | 1_2:-45277340 | Msa0072380:CDS |
| CATATGCCAAGAGAATGGTT+TGG | 0.584136 | 1_2:-45277170 | Msa0072380:CDS |
| GTCATCCAAACCTTGAGTTG+TGG | 0.586628 | 1_2:+45277330 | None:intergenic |
| AGTACTATGAAGCCGGTGCA+AGG | 0.593122 | 1_2:-45277288 | Msa0072380:CDS |
| ACTCAAGGTTTGGATGACCT+TGG | 0.593476 | 1_2:-45277325 | Msa0072380:CDS |
| TTCGCGAAGAGTACGTCTGT+TGG | 0.596179 | 1_2:+45278143 | None:intergenic |
| TAGAAATGCTAAATTCAAAG+GGG | 0.597577 | 1_2:+45276266 | None:intergenic |
| ACTTCTTGCACCTCTGACCA+AGG | 0.600417 | 1_2:+45277308 | None:intergenic |
| TCCGGGTATCAAGGTTGACA+AGG | 0.600493 | 1_2:-45277386 | Msa0072380:CDS |
| GTTTGGATGACCTTGGTCAG+AGG | 0.601427 | 1_2:-45277318 | Msa0072380:CDS |
| AGAATCCATACTACCTGCAG+CGG | 0.606136 | 1_2:+45278044 | None:intergenic |
| AAGCCTAATATGGTTACACC+AGG | 0.609198 | 1_2:-45277010 | Msa0072380:CDS |
| AAATACTAATATGTTAAAGA+GGG | 0.613786 | 1_2:-45276614 | Msa0072380:exon |
| AAAAGTGTAAAGCAGAAAGT+GGG | 0.614949 | 1_2:-45276319 | Msa0072380:three_prime_UTR |
| TCTTACATTCTCTTATGGAA+GGG | 0.615325 | 1_2:-45276810 | Msa0072380:CDS |
| ATTTGGACCGATCTTTAGCA+CGG | 0.615328 | 1_2:+45277249 | None:intergenic |
| TGTAGAGCCTGAGATTCTAG+TGG | 0.617102 | 1_2:-45277140 | Msa0072380:CDS |
| CAGTAGATTCATCAGCAGCA+AGG | 0.619396 | 1_2:+45278214 | None:intergenic |
| TTTCTTCAACACATCCACAA+AGG | 0.625245 | 1_2:+45277420 | None:intergenic |
| GTCTGGTGGACAAAGTGAAG+AGG | 0.625664 | 1_2:-45276888 | Msa0072380:CDS |
| AGTACTCTTAAGGCATGGGG+TGG | 0.629413 | 1_2:-45276776 | Msa0072380:CDS |
| GAAAACTATAGCTGGAACTG+CGG | 0.632802 | 1_2:+45276913 | None:intergenic |
| GGTTGTTTAGACTGCCTCAG+TGG | 0.642712 | 1_2:-45278102 | Msa0072380:CDS |
| TACCTTCAAGAAGAACATGA+TGG | 0.642921 | 1_2:+45277041 | None:intergenic |
| ATATGTTAAAGAGGGTTGTG+AGG | 0.648981 | 1_2:-45276606 | Msa0072380:three_prime_UTR |
| CAAAGTACTCTTAAGGCATG+GGG | 0.654273 | 1_2:-45276779 | Msa0072380:CDS |
| GGTAATGCTAACCTTGGTGA+TGG | 0.655737 | 1_2:-45276668 | Msa0072380:CDS |
| CCGGGTATCAAGGTTGACAA+GGG | 0.663397 | 1_2:-45277385 | Msa0072380:CDS |
| AGAAATGCTAAATTCAAAGG+GGG | 0.672066 | 1_2:+45276267 | None:intergenic |
| TGAGGCAGTCTAAACAACCA+GGG | 0.687038 | 1_2:+45278106 | None:intergenic |
| GCGATTCGCTAGCATCAATG+TGG | 0.695493 | 1_2:-45278178 | Msa0072380:CDS |
| GAGGCAGTCTAAACAACCAG+GGG | 0.707381 | 1_2:+45278107 | None:intergenic |
| ACTCTGAAGCACCATCACCA+AGG | 0.713624 | 1_2:+45276657 | None:intergenic |
| GGCATAACGAGCTAAACCGT+AGG | 0.727129 | 1_2:+45277195 | None:intergenic |
| CGAACAAGATAACACCACTG+AGG | 0.795503 | 1_2:+45278088 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAAAAATCAAA+AGG | + | chr1_2:45276884-45276903 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTCGTTTTAT+AGG | - | chr1_2:45276465-45276484 | Msa0072380:three_prime_UTR | 15.0% |
| !!! | TATCAGATTAAATTTTCATA+TGG | + | chr1_2:45277280-45277299 | None:intergenic | 15.0% |
| !!! | ATCTTCTTTATGAAATATTT+TGG | - | chr1_2:45277530-45277549 | Msa0072380:intron | 15.0% |
| !!! | TTTTAATCTTTCATAGATAT+CGG | - | chr1_2:45278022-45278041 | Msa0072380:intron | 15.0% |
| !! | TTAAATAAGTAAATCCAAAA+AGG | + | chr1_2:45278056-45278075 | None:intergenic | 15.0% |
| !!! | ACTTATTTAAAGTAATCTAT+TGG | - | chr1_2:45278066-45278085 | Msa0072380:CDS | 15.0% |
| !! | AAATACTAATATGTTAAAGA+GGG | - | chr1_2:45279322-45279341 | Msa0072380:intron | 15.0% |
| !! | AAGAGAAAGTAAAAAACAAT+GGG | + | chr1_2:45276230-45276249 | None:intergenic | 20.0% |
| !! | AAAGAGAAAGTAAAAAACAA+TGG | + | chr1_2:45276231-45276250 | None:intergenic | 20.0% |
| !!! | TGAGTTTTGAAGATTTATAA+AGG | + | chr1_2:45276281-45276300 | None:intergenic | 20.0% |
| !!! | TTCTAAAAGTAGTAAAAAAG+AGG | - | chr1_2:45276786-45276805 | Msa0072380:CDS | 20.0% |
| !!! | AAGTGAAAGAAATGATATTT+TGG | - | chr1_2:45276830-45276849 | Msa0072380:CDS | 20.0% |
| !!! | TACTTTGTTTGACAAAATTA+CGG | - | chr1_2:45277104-45277123 | Msa0072380:CDS | 20.0% |
| !!! | AATGTTTATTTTGAATTAGC+AGG | - | chr1_2:45277969-45277988 | Msa0072380:intron | 20.0% |
| !! | AATAAACTTAAAACAGCTTA+AGG | + | chr1_2:45278138-45278157 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAAGAAAAGACA+TGG | + | chr1_2:45278320-45278339 | None:intergenic | 20.0% |
| !! | CAAATACTAATATGTTAAAG+AGG | - | chr1_2:45279321-45279340 | Msa0072380:intron | 20.0% |
| !!! | AATAGTGTTTGTTTTTGTTT+AGG | - | chr1_2:45279416-45279435 | Msa0072380:intron | 20.0% |
| !! | ATAGAAATGCTAAATTCAAA+GGG | + | chr1_2:45279674-45279693 | None:intergenic | 20.0% |
| ! | TCAAGTAAAAATATGTCATG+TGG | - | chr1_2:45276712-45276731 | Msa0072380:CDS | 25.0% |
| ! | AGTAGTAAAAAAGAGGAAAA+AGG | - | chr1_2:45276793-45276812 | Msa0072380:CDS | 25.0% |
| !! | TTTTGGCATCAAAATTTTGA+TGG | - | chr1_2:45276847-45276866 | Msa0072380:CDS | 25.0% |
| ! | TTCTTAGTGTATGTTTCAAT+TGG | + | chr1_2:45277213-45277232 | None:intergenic | 25.0% |
| ! | GAAACATACACTAAGAAATA+AGG | - | chr1_2:45277216-45277235 | Msa0072380:CDS | 25.0% |
| ! | GTTCGATTCATAAAACTAAA+GGG | - | chr1_2:45277238-45277257 | Msa0072380:CDS | 25.0% |
| ! | AATTAAGATGTTTGACTCTT+TGG | + | chr1_2:45277338-45277357 | None:intergenic | 25.0% |
| !! | TGAAAAGCTTAACTCAATTT+TGG | - | chr1_2:45277488-45277507 | Msa0072380:intron | 25.0% |
| !!! | TATTTTGGAAAAAAGTTGCT+AGG | - | chr1_2:45277545-45277564 | Msa0072380:intron | 25.0% |
| !! | AATTTTGTACTTACTTCTTG+TGG | - | chr1_2:45277575-45277594 | Msa0072380:intron | 25.0% |
| !! | TCTATTTGTTGAAGTTTCTA+AGG | - | chr1_2:45277632-45277651 | Msa0072380:intron | 25.0% |
| !! | ATATAAGCTATAAACCGTTT+TGG | + | chr1_2:45278186-45278205 | None:intergenic | 25.0% |
| !! | TAAGTTTGTTCATTGCATTA+AGG | + | chr1_2:45279087-45279106 | None:intergenic | 25.0% |
| ! | TAATGCAATGAACAAACTTA+AGG | - | chr1_2:45279087-45279106 | Msa0072380:intron | 25.0% |
| ! | AATGCAATGAACAAACTTAA+GGG | - | chr1_2:45279088-45279107 | Msa0072380:intron | 25.0% |
| !! | TTGTGGTAAAGTATCAATAA+TGG | - | chr1_2:45279443-45279462 | Msa0072380:intron | 25.0% |
| !!! | TTGGCATTTATTTTTCAACA+TGG | - | chr1_2:45279487-45279506 | Msa0072380:intron | 25.0% |
| !!! | TTTTTTGTTACACACACTTT+TGG | + | chr1_2:45279601-45279620 | None:intergenic | 25.0% |
| ! | TAGAAATGCTAAATTCAAAG+GGG | + | chr1_2:45279673-45279692 | None:intergenic | 25.0% |
| ! | CATAGAAATGCTAAATTCAA+AGG | + | chr1_2:45279675-45279694 | None:intergenic | 25.0% |
| !!! | TGTTTGTTTTGTGTGATGTT+TGG | + | chr1_2:45276335-45276354 | None:intergenic | 30.0% |
| TCTTTCAAGAGCAAATATGA+AGG | - | chr1_2:45276402-45276421 | Msa0072380:three_prime_UTR | 30.0% | |
| ! | TTCATCATCTAGTGTGTTTT+TGG | - | chr1_2:45276435-45276454 | Msa0072380:three_prime_UTR | 30.0% |
| CATGAATGATCAAGAAACAA+AGG | + | chr1_2:45276500-45276519 | None:intergenic | 30.0% | |
| ! | ATGTTACACTAGCTTCATTT+AGG | - | chr1_2:45276517-45276536 | Msa0072380:three_prime_UTR | 30.0% |
| ! | CAGAACTAGTTGAGTATTTT+GGG | - | chr1_2:45276687-45276706 | Msa0072380:CDS | 30.0% |
| ! | ATTTTTGCCAAAAATTACCG+TGG | - | chr1_2:45277160-45277179 | Msa0072380:CDS | 30.0% |
| ! | CTATTTACCACGGTAATTTT+TGG | + | chr1_2:45277170-45277189 | None:intergenic | 30.0% |
| GGTTCGATTCATAAAACTAA+AGG | - | chr1_2:45277237-45277256 | Msa0072380:CDS | 30.0% | |
| AATCGTTGACATCTAAATCT+AGG | + | chr1_2:45278003-45278022 | None:intergenic | 30.0% | |
| !! | TTTCATAGATATCGGCTTTA+AGG | - | chr1_2:45278030-45278049 | Msa0072380:intron | 30.0% |
| TAAACACTTACGAGACTATT+TGG | - | chr1_2:45278091-45278110 | Msa0072380:CDS | 30.0% | |
| TTTATTTCCATATGTTCTCC+AGG | - | chr1_2:45278152-45278171 | Msa0072380:CDS | 30.0% | |
| TTATTTCCATATGTTCTCCA+GGG | - | chr1_2:45278153-45278172 | Msa0072380:CDS | 30.0% | |
| TAAATAAGCGCTTCTCATAT+AGG | + | chr1_2:45278266-45278285 | None:intergenic | 30.0% | |
| TTTGAAAGAAAAGACATGGA+AGG | + | chr1_2:45278316-45278335 | None:intergenic | 30.0% | |
| ACAGTTGAGAAAAAAGTTAG+AGG | + | chr1_2:45278484-45278503 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCTCAACTGTGTAT+AGG | - | chr1_2:45278488-45278507 | Msa0072380:intron | 30.0% |
| !!! | TACTCTTTTGAAGCCTAATA+TGG | - | chr1_2:45278916-45278935 | Msa0072380:intron | 30.0% |
| TCTTACATTCTCTTATGGAA+GGG | - | chr1_2:45279126-45279145 | Msa0072380:intron | 30.0% | |
| !!! | GTGTTTGTTTTTGTTTAGGT+TGG | - | chr1_2:45279420-45279439 | Msa0072380:intron | 30.0% |
| GTTGTGTGAAAAATGTATGA+TGG | + | chr1_2:45279535-45279554 | None:intergenic | 30.0% | |
| ! | AAAAAGTGTAAAGCAGAAAG+TGG | - | chr1_2:45279616-45279635 | Msa0072380:five_prime_UTR | 30.0% |
| ! | AAAAGTGTAAAGCAGAAAGT+GGG | - | chr1_2:45279617-45279636 | Msa0072380:five_prime_UTR | 30.0% |
| AGAAATGCTAAATTCAAAGG+GGG | + | chr1_2:45279672-45279691 | None:intergenic | 30.0% | |
| ! | TAGAATGATGGAAAAACAAG+TGG | + | chr1_2:45279708-45279727 | None:intergenic | 30.0% |
| ACTTTCAGTACATAGAATGA+TGG | + | chr1_2:45279720-45279739 | None:intergenic | 30.0% | |
| TAGAGAAGACAAGTAAGAAG+AGG | + | chr1_2:45276308-45276327 | None:intergenic | 35.0% | |
| CTTGAAAGAAGACATGTTAG+TGG | + | chr1_2:45276391-45276410 | None:intergenic | 35.0% | |
| ! | CACTAGCTTCATTTAGGTAT+CGG | - | chr1_2:45276523-45276542 | Msa0072380:three_prime_UTR | 35.0% |
| ACACTCTTCTCTATTCATCT+AGG | + | chr1_2:45276609-45276628 | None:intergenic | 35.0% | |
| ! | GCAGAACTAGTTGAGTATTT+TGG | - | chr1_2:45276686-45276705 | Msa0072380:CDS | 35.0% |
| ! | GACTGCAAACTTTTATACTG+TGG | - | chr1_2:45276744-45276763 | Msa0072380:CDS | 35.0% |
| AACCACATTCTATTAGCTAG+TGG | + | chr1_2:45277047-45277066 | None:intergenic | 35.0% | |
| TTCTATTAGCAACTAGCAGT+TGG | - | chr1_2:45277065-45277084 | Msa0072380:CDS | 35.0% | |
| TGATAGTAGATTGCAATCTC+TGG | - | chr1_2:45277295-45277314 | Msa0072380:CDS | 35.0% | |
| CTAATAATCCGTGCAACAAA+CGG | - | chr1_2:45277427-45277446 | Msa0072380:CDS | 35.0% | |
| TAATAATCCGTGCAACAAAC+GGG | - | chr1_2:45277428-45277447 | Msa0072380:CDS | 35.0% | |
| ! | ATTGCCAATGCTGCTTATAT+TGG | - | chr1_2:45277681-45277700 | Msa0072380:intron | 35.0% |
| GTTGACATCTAAATCTAGGA+TGG | + | chr1_2:45277999-45278018 | None:intergenic | 35.0% | |
| TTTAACAAATTCTCGTCGTG+TGG | - | chr1_2:45278338-45278357 | Msa0072380:intron | 35.0% | |
| ATTGAGATGCAAATGCATCA+CGG | + | chr1_2:45278416-45278435 | None:intergenic | 35.0% | |
| TTCTTCAACACATCCACAAA+GGG | + | chr1_2:45278518-45278537 | None:intergenic | 35.0% | |
| TTTCTTCAACACATCCACAA+AGG | + | chr1_2:45278519-45278538 | None:intergenic | 35.0% | |
| TACCTTCAAGAAGAACATGA+TGG | + | chr1_2:45278898-45278917 | None:intergenic | 35.0% | |
| TAAGAGAATGTAAGAGTCCA+AGG | + | chr1_2:45279121-45279140 | None:intergenic | 35.0% | |
| TGGACTCTTACATTCTCTTA+TGG | - | chr1_2:45279121-45279140 | Msa0072380:intron | 35.0% | |
| CTCTTACATTCTCTTATGGA+AGG | - | chr1_2:45279125-45279144 | Msa0072380:intron | 35.0% | |
| ! | ACTTCAGCAAAGTACTCTTA+AGG | - | chr1_2:45279150-45279169 | Msa0072380:intron | 35.0% |
| TATCAAGGTAATGCTAACCT+TGG | - | chr1_2:45279262-45279281 | Msa0072380:intron | 35.0% | |
| TTCAGAGTCTCTTCATGTTA+AGG | - | chr1_2:45279294-45279313 | Msa0072380:intron | 35.0% | |
| ATATGTTAAAGAGGGTTGTG+AGG | - | chr1_2:45279330-45279349 | Msa0072380:intron | 35.0% | |
| !!! | TTTTGGAGTTGTATGCATCA+TGG | - | chr1_2:45279368-45279387 | Msa0072380:intron | 35.0% |
| AGTTGTATGCATCATGGTTA+TGG | - | chr1_2:45279374-45279393 | Msa0072380:intron | 35.0% | |
| !!! | TGGTTATGGTGCTATTTTGT+AGG | - | chr1_2:45279388-45279407 | Msa0072380:intron | 35.0% |
| !!! | GGTTATGGTGCTATTTTGTA+GGG | - | chr1_2:45279389-45279408 | Msa0072380:intron | 35.0% |
| !!! | GTTTTTGTTTAGGTTGGTTG+TGG | - | chr1_2:45279426-45279445 | Msa0072380:intron | 35.0% |
| ! | GATGAATAGAGAAGAGTGTG+TGG | - | chr1_2:45276610-45276629 | Msa0072380:exon | 40.0% |
| !! | AGCAAGATTCTAGTCTTGCT+TGG | - | chr1_2:45277010-45277029 | Msa0072380:CDS | 40.0% |
| !! | GCAAGATTCTAGTCTTGCTT+GGG | - | chr1_2:45277011-45277030 | Msa0072380:CDS | 40.0% |
| !! | ATTCTAGTCTTGCTTGGGAT+TGG | - | chr1_2:45277016-45277035 | Msa0072380:CDS | 40.0% |
| CACCACTAGCTAATAGAATG+TGG | - | chr1_2:45277042-45277061 | Msa0072380:CDS | 40.0% | |
| GACAAAATTACGGTCGAATG+TGG | - | chr1_2:45277114-45277133 | Msa0072380:CDS | 40.0% | |
| GGCAGAATCACTATTTACCA+CGG | + | chr1_2:45277180-45277199 | None:intergenic | 40.0% | |
| GTTTCAATTGGCAGCGATTA+TGG | + | chr1_2:45277201-45277220 | None:intergenic | 40.0% | |
| AATAATCCGTGCAACAAACG+GGG | - | chr1_2:45277429-45277448 | Msa0072380:CDS | 40.0% | |
| ! | ATTTATCCCCGTTTGTTGCA+CGG | + | chr1_2:45277438-45277457 | None:intergenic | 40.0% |
| AGAGCCAATATAAGCAGCAT+TGG | + | chr1_2:45277688-45277707 | None:intergenic | 40.0% | |
| GATGAATCTACTGGCACAAT+TGG | - | chr1_2:45277732-45277751 | Msa0072380:intron | 40.0% | |
| CTATATCAAAAAACCGCTGC+AGG | - | chr1_2:45277879-45277898 | Msa0072380:intron | 40.0% | |
| !!! | TATCGGCTTTAAGGCCTTTT+TGG | - | chr1_2:45278039-45278058 | Msa0072380:intron | 40.0% |
| TTGAGATGCAAATGCATCAC+GGG | + | chr1_2:45278415-45278434 | None:intergenic | 40.0% | |
| AATGGAGAAACCACAACTCA+AGG | - | chr1_2:45278596-45278615 | Msa0072380:intron | 40.0% | |
| AGAAACCACAACTCAAGGTT+TGG | - | chr1_2:45278601-45278620 | Msa0072380:intron | 40.0% | |
| !! | TGCAAGAAGTACTATGAAGC+CGG | - | chr1_2:45278641-45278660 | Msa0072380:intron | 40.0% |
| ATTTGGACCGATCTTTAGCA+CGG | + | chr1_2:45278690-45278709 | None:intergenic | 40.0% | |
| ACCATTCTCTTGGCATATGA+CGG | + | chr1_2:45278765-45278784 | None:intergenic | 40.0% | |
| CATATGCCAAGAGAATGGTT+TGG | - | chr1_2:45278766-45278785 | Msa0072380:intron | 40.0% | |
| TTGGAACCAAACCATTCTCT+TGG | + | chr1_2:45278775-45278794 | None:intergenic | 40.0% | |
| AGAATCTCAGGCTCTACAAT+TGG | + | chr1_2:45278794-45278813 | None:intergenic | 40.0% | |
| CGTTCTTGCAACATGTTACA+AGG | - | chr1_2:45278862-45278881 | Msa0072380:intron | 40.0% | |
| GACCATCATGTTCTTCTTGA+AGG | - | chr1_2:45278893-45278912 | Msa0072380:intron | 40.0% | |
| AAGCCTAATATGGTTACACC+AGG | - | chr1_2:45278926-45278945 | Msa0072380:intron | 40.0% | |
| GATCCTGGTGTAACCATATT+AGG | + | chr1_2:45278932-45278951 | None:intergenic | 40.0% | |
| ATAACCTCAGGAGCAACTTT+AGG | + | chr1_2:45278962-45278981 | None:intergenic | 40.0% | |
| GAAAACTATAGCTGGAACTG+CGG | + | chr1_2:45279026-45279045 | None:intergenic | 40.0% | |
| CCAGACAAGAAAACTATAGC+TGG | + | chr1_2:45279034-45279053 | None:intergenic | 40.0% | |
| ! | CCAGCTATAGTTTTCTTGTC+TGG | - | chr1_2:45279031-45279050 | Msa0072380:intron | 40.0% |
| ! | GCTATAGTTTTCTTGTCTGG+TGG | - | chr1_2:45279034-45279053 | Msa0072380:intron | 40.0% |
| AACTTAAGGGAAAGAAGCCT+TGG | - | chr1_2:45279101-45279120 | Msa0072380:intron | 40.0% | |
| ! | AGCAAAGTACTCTTAAGGCA+TGG | - | chr1_2:45279155-45279174 | Msa0072380:intron | 40.0% |
| ! | GCAAAGTACTCTTAAGGCAT+GGG | - | chr1_2:45279156-45279175 | Msa0072380:intron | 40.0% |
| ! | CAAAGTACTCTTAAGGCATG+GGG | - | chr1_2:45279157-45279176 | Msa0072380:intron | 40.0% |
| GCAAATTCAGAAGCAACTCT+AGG | - | chr1_2:45279235-45279254 | Msa0072380:intron | 40.0% | |
| ! | GCAACTCTAGGAACTTATCA+AGG | - | chr1_2:45279247-45279266 | Msa0072380:intron | 40.0% |
| !! | GGCTCTGATTGAACTTGTTT+TGG | - | chr1_2:45279351-45279370 | Msa0072380:intron | 40.0% |
| ATAATGGCTTCAAGCTGAAC+TGG | - | chr1_2:45279459-45279478 | Msa0072380:intron | 40.0% | |
| GCAATCTCTGGTGATACTTG+AGG | - | chr1_2:45277307-45277326 | Msa0072380:CDS | 45.0% | |
| !! | TTATATTGGCTCTCCCGGAA+AGG | - | chr1_2:45277695-45277714 | Msa0072380:intron | 45.0% |
| !! | TATATTGGCTCTCCCGGAAA+GGG | - | chr1_2:45277696-45277715 | Msa0072380:intron | 45.0% |
| CAGTAGATTCATCAGCAGCA+AGG | + | chr1_2:45277725-45277744 | None:intergenic | 45.0% | |
| CTTGCTGCTGATGAATCTAC+TGG | - | chr1_2:45277723-45277742 | Msa0072380:intron | 45.0% | |
| TGAGGCAGTCTAAACAACCA+GGG | + | chr1_2:45277833-45277852 | None:intergenic | 45.0% | |
| CGAACAAGATAACACCACTG+AGG | + | chr1_2:45277851-45277870 | None:intergenic | 45.0% | |
| AAAAACCGCTGCAGGTAGTA+TGG | - | chr1_2:45277887-45277906 | Msa0072380:intron | 45.0% | |
| AGAATCCATACTACCTGCAG+CGG | + | chr1_2:45277895-45277914 | None:intergenic | 45.0% | |
| ATGCTACCCTGGAGAACATA+TGG | + | chr1_2:45278162-45278181 | None:intergenic | 45.0% | |
| TCCAGGGTAGCATACCAAAA+CGG | - | chr1_2:45278169-45278188 | Msa0072380:CDS | 45.0% | |
| CGTGTGGTAGATGATTGATG+AGG | - | chr1_2:45278354-45278373 | Msa0072380:intron | 45.0% | |
| TAGATGATTGATGAGGTCCG+AGG | - | chr1_2:45278361-45278380 | Msa0072380:intron | 45.0% | |
| ! | TTCCAACTAAGTTGACGCCT+CGG | + | chr1_2:45278381-45278400 | None:intergenic | 45.0% |
| !! | GTGTATAGGAGTACCCTTTG+TGG | - | chr1_2:45278502-45278521 | Msa0072380:intron | 45.0% |
| GTGGATGTGTTGAAGAAAGC+TGG | - | chr1_2:45278521-45278540 | Msa0072380:intron | 45.0% | |
| GAAGAAAGCTGGAGTTCTTC+CGG | - | chr1_2:45278532-45278551 | Msa0072380:intron | 45.0% | |
| AAGAAAGCTGGAGTTCTTCC+GGG | - | chr1_2:45278533-45278552 | Msa0072380:intron | 45.0% | |
| ! | ATTTGTGCCGGCAAGTTCAA+CGG | + | chr1_2:45278579-45278598 | None:intergenic | 45.0% |
| TGTGGTTTCTCCATTTGTGC+CGG | + | chr1_2:45278591-45278610 | None:intergenic | 45.0% | |
| ! | GTCATCCAAACCTTGAGTTG+TGG | + | chr1_2:45278609-45278628 | None:intergenic | 45.0% |
| ACTCAAGGTTTGGATGACCT+TGG | - | chr1_2:45278611-45278630 | Msa0072380:intron | 45.0% | |
| GACAAGGGAGATGGTTCATT+TGG | + | chr1_2:45278707-45278726 | None:intergenic | 45.0% | |
| !! | GCGTTTTCGTGGATTGACAA+GGG | + | chr1_2:45278722-45278741 | None:intergenic | 45.0% |
| TCAATCCACGAAAACGCCTA+CGG | - | chr1_2:45278725-45278744 | Msa0072380:intron | 45.0% | |
| TGTAGAGCCTGAGATTCTAG+TGG | - | chr1_2:45278796-45278815 | Msa0072380:intron | 45.0% | |
| GATCCATCCACTAGAATCTC+AGG | + | chr1_2:45278806-45278825 | None:intergenic | 45.0% | |
| ! | ACTTTAGGAGAGTCTGATCC+TGG | + | chr1_2:45278947-45278966 | None:intergenic | 45.0% |
| AGCAATGCAGCTTGAGCTTT+AGG | + | chr1_2:45279202-45279221 | None:intergenic | 45.0% | |
| CTCAAGCTGCATTGCTTGTT+AGG | - | chr1_2:45279206-45279225 | Msa0072380:intron | 45.0% | |
| GGTAATGCTAACCTTGGTGA+TGG | - | chr1_2:45279268-45279287 | Msa0072380:intron | 45.0% | |
| !! | TCAAGCTGAACTGGCTTGAT+TGG | - | chr1_2:45279468-45279487 | Msa0072380:intron | 45.0% |
| !! | GCTGCTTATATTGGCTCTCC+CGG | - | chr1_2:45277690-45277709 | Msa0072380:intron | 50.0% |
| AGCAGCAAGGATACCCTTTC+CGG | + | chr1_2:45277712-45277731 | None:intergenic | 50.0% | |
| GCGATTCGCTAGCATCAATG+TGG | - | chr1_2:45277758-45277777 | Msa0072380:intron | 50.0% | |
| ! | TTCGCGAAGAGTACGTCTGT+TGG | + | chr1_2:45277796-45277815 | None:intergenic | 50.0% |
| GAGGCAGTCTAAACAACCAG+GGG | + | chr1_2:45277832-45277851 | None:intergenic | 50.0% | |
| CTGAGGCAGTCTAAACAACC+AGG | + | chr1_2:45277834-45277853 | None:intergenic | 50.0% | |
| GGTTGTTTAGACTGCCTCAG+TGG | - | chr1_2:45277834-45277853 | Msa0072380:intron | 50.0% | |
| !! | ACCGTTTTGGTATGCTACCC+TGG | + | chr1_2:45278173-45278192 | None:intergenic | 50.0% |
| GATGCAAATGCATCACGGGA+AGG | + | chr1_2:45278411-45278430 | None:intergenic | 50.0% | |
| TGGAGTTCTTCCGGGTATCA+AGG | - | chr1_2:45278541-45278560 | Msa0072380:intron | 50.0% | |
| TCCGGGTATCAAGGTTGACA+AGG | - | chr1_2:45278550-45278569 | Msa0072380:intron | 50.0% | |
| CCCTTGTCAACCTTGATACC+CGG | + | chr1_2:45278554-45278573 | None:intergenic | 50.0% | |
| CCGGGTATCAAGGTTGACAA+GGG | - | chr1_2:45278551-45278570 | Msa0072380:intron | 50.0% | |
| AAGGGAACCGTTGAACTTGC+CGG | - | chr1_2:45278569-45278588 | Msa0072380:intron | 50.0% | |
| GTTGAACTTGCCGGCACAAA+TGG | - | chr1_2:45278578-45278597 | Msa0072380:intron | 50.0% | |
| GTTTGGATGACCTTGGTCAG+AGG | - | chr1_2:45278618-45278637 | Msa0072380:intron | 50.0% | |
| ACTTCTTGCACCTCTGACCA+AGG | + | chr1_2:45278631-45278650 | None:intergenic | 50.0% | |
| AGTACTATGAAGCCGGTGCA+AGG | - | chr1_2:45278648-45278667 | Msa0072380:intron | 50.0% | |
| CCATTTAGCGAACCTTGCAC+CGG | + | chr1_2:45278663-45278682 | None:intergenic | 50.0% | |
| ! | TCGTGGATTGACAAGGGAGA+TGG | + | chr1_2:45278716-45278735 | None:intergenic | 50.0% |
| !! | GGCGTTTTCGTGGATTGACA+AGG | + | chr1_2:45278723-45278742 | None:intergenic | 50.0% |
| ! | CTAAACCGTAGGCGTTTTCG+TGG | + | chr1_2:45278733-45278752 | None:intergenic | 50.0% |
| GGCATAACGAGCTAAACCGT+AGG | + | chr1_2:45278744-45278763 | None:intergenic | 50.0% | |
| GCCGTCATATGCCAAGAGAA+TGG | - | chr1_2:45278761-45278780 | Msa0072380:intron | 50.0% | |
| GAGCCTGAGATTCTAGTGGA+TGG | - | chr1_2:45278800-45278819 | Msa0072380:intron | 50.0% | |
| CTCTCCTAAAGTTGCTCCTG+AGG | - | chr1_2:45278955-45278974 | Msa0072380:intron | 50.0% | |
| GTGTGTTGGGCTATAACCTC+AGG | + | chr1_2:45278974-45278993 | None:intergenic | 50.0% | |
| CAAAGCTCGGACTGTGTGTT+GGG | + | chr1_2:45278987-45279006 | None:intergenic | 50.0% | |
| ACAAAGCTCGGACTGTGTGT+TGG | + | chr1_2:45278988-45279007 | None:intergenic | 50.0% | |
| GAACGGTTCGCAACAAAGCT+CGG | + | chr1_2:45279000-45279019 | None:intergenic | 50.0% | |
| ! | GTCTGGTGGACAAAGTGAAG+AGG | - | chr1_2:45279048-45279067 | Msa0072380:intron | 50.0% |
| AGTACTCTTAAGGCATGGGG+TGG | - | chr1_2:45279160-45279179 | Msa0072380:intron | 50.0% | |
| !! | ACTCTGAAGCACCATCACCA+AGG | + | chr1_2:45279282-45279301 | None:intergenic | 50.0% |
| GCAGCAAGGATACCCTTTCC+GGG | + | chr1_2:45277711-45277730 | None:intergenic | 55.0% | |
| GAACTCTTGTTCACTGCCCC+TGG | - | chr1_2:45277813-45277832 | Msa0072380:intron | 55.0% | |
| ! | GTCCGAGGCGTCAACTTAGT+TGG | - | chr1_2:45278376-45278395 | Msa0072380:intron | 55.0% |
| CCGGTGCAAGGTTCGCTAAA+TGG | - | chr1_2:45278660-45278679 | Msa0072380:intron | 55.0% | |
| TGGCGTGCCGTGCTAAAGAT+CGG | - | chr1_2:45278680-45278699 | Msa0072380:intron | 55.0% | |
| ACTATAGCTGGAACTGCGGC+AGG | + | chr1_2:45279022-45279041 | None:intergenic | 55.0% | |
| AGCTGGAACTGCGGCAGGAA+CGG | + | chr1_2:45279017-45279036 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 45276218 | 45279740 | 45276218 | ID=Msa0072380;Name=Msa0072380 |
| chr1_2 | mRNA | 45276218 | 45279740 | 45276218 | ID=Msa0072380-mRNA-1;Parent=Msa0072380;Name=Msa0072380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|0.5|1|3|410|358 |
| chr1_2 | exon | 45276218 | 45277448 | 45276218 | ID=Msa0072380-mRNA-1:exon:13627;Parent=Msa0072380-mRNA-1 |
| chr1_2 | exon | 45278058 | 45278285 | 45278058 | ID=Msa0072380-mRNA-1:exon:13626;Parent=Msa0072380-mRNA-1 |
| chr1_2 | exon | 45279535 | 45279740 | 45279535 | ID=Msa0072380-mRNA-1:exon:13625;Parent=Msa0072380-mRNA-1 |
| chr1_2 | five_prime_UTR | 45279563 | 45279740 | 45279563 | ID=Msa0072380-mRNA-1:five_prime_utr;Parent=Msa0072380-mRNA-1 |
| chr1_2 | CDS | 45279535 | 45279562 | 45279535 | ID=Msa0072380-mRNA-1:cds;Parent=Msa0072380-mRNA-1 |
| chr1_2 | CDS | 45278058 | 45278285 | 45278058 | ID=Msa0072380-mRNA-1:cds;Parent=Msa0072380-mRNA-1 |
| chr1_2 | CDS | 45276628 | 45277448 | 45276628 | ID=Msa0072380-mRNA-1:cds;Parent=Msa0072380-mRNA-1 |
| chr1_2 | three_prime_UTR | 45276218 | 45276627 | 45276218 | ID=Msa0072380-mRNA-1:three_prime_utr;Parent=Msa0072380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
