Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024890 | sp|Q9SJQ9|ALFC6_ARATH | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 647 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024890 | Msa0034310 | 0.807835 | 4.163610e-50 | -8.615850e-47 |
| Msa0024890 | Msa0043120 | 0.802044 | 6.763104e-49 | -8.615850e-47 |
| Msa0024890 | Msa0072380 | 0.924737 | 4.718336e-90 | -8.615850e-47 |
| Msa0024890 | Msa0081310 | 0.821342 | 4.248299e-53 | -8.615850e-47 |
| Msa0024890 | Msa0173620 | 0.824136 | 9.506108e-54 | -8.615850e-47 |
| Msa0024890 | Msa0242700 | 0.830785 | 2.415519e-55 | -8.615850e-47 |
| Msa0024890 | Msa0280950 | 0.801427 | 9.049288e-49 | -8.615850e-47 |
| Msa0024890 | Msa0841800 | 0.824971 | 6.045128e-54 | -8.615850e-47 |
| Msa0024890 | Msa1002990 | 0.823571 | 1.289018e-53 | -8.615850e-47 |
| Msa0024890 | Msa1412760 | 0.801255 | 9.814542e-49 | -8.615850e-47 |
| Msa0024890 | Msa1416470 | 0.821584 | 3.735766e-53 | -8.615850e-47 |
| Msa0024890 | Msa1449670 | 0.804738 | 1.870636e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024890 | MtrunA17_Chr1g0179211 | 99.162 | 358 | 3 | 0 | 1 | 358 | 1 | 358 | 0.0 | 730 |
| Msa0024890 | MtrunA17_Chr7g0265821 | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 654 |
| Msa0024890 | MtrunA17_Chr5g0429051 | 85.754 | 358 | 51 | 0 | 1 | 358 | 1 | 358 | 0.0 | 637 |
| Msa0024890 | MtrunA17_Chr5g0447091 | 76.257 | 358 | 84 | 1 | 1 | 358 | 1 | 357 | 0.0 | 558 |
| Msa0024890 | MtrunA17_Chr4g0028361 | 55.966 | 352 | 150 | 4 | 8 | 358 | 53 | 400 | 5.96e-132 | 382 |
| Msa0024890 | MtrunA17_Chr4g0035951 | 55.682 | 352 | 151 | 4 | 8 | 358 | 53 | 400 | 2.35e-131 | 381 |
| Msa0024890 | MtrunA17_Chr1g0208981 | 53.090 | 356 | 162 | 4 | 4 | 358 | 40 | 391 | 6.41e-129 | 374 |
| Msa0024890 | MtrunA17_Chr5g0429031 | 84.834 | 211 | 32 | 0 | 1 | 211 | 42 | 252 | 4.68e-126 | 362 |
| Msa0024890 | MtrunA17_Chr4g0035981 | 53.556 | 239 | 106 | 4 | 121 | 358 | 6 | 240 | 5.12e-82 | 249 |
| Msa0024890 | MtrunA17_Chr5g0429021 | 79.389 | 131 | 27 | 0 | 228 | 358 | 1 | 131 | 1.90e-73 | 224 |
| Msa0024890 | MtrunA17_Chr7g0265811 | 69.792 | 96 | 4 | 1 | 112 | 207 | 21 | 91 | 3.85e-37 | 129 |
| Msa0024890 | MtrunA17_Chr4g0035971 | 55.814 | 86 | 38 | 0 | 8 | 93 | 51 | 136 | 3.57e-23 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0024890 | AT2G36460.1 | 87.430 | 358 | 45 | 0 | 1 | 358 | 1 | 358 | 0.0 | 647 |
| Msa0024890 | AT3G52930.1 | 86.872 | 358 | 47 | 0 | 1 | 358 | 1 | 358 | 0.0 | 640 |
| Msa0024890 | AT5G03690.2 | 86.351 | 359 | 48 | 1 | 1 | 358 | 1 | 359 | 0.0 | 614 |
| Msa0024890 | AT5G03690.1 | 86.819 | 349 | 45 | 1 | 11 | 358 | 45 | 393 | 0.0 | 600 |
| Msa0024890 | AT4G26530.1 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| Msa0024890 | AT4G26530.3 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| Msa0024890 | AT4G26530.2 | 78.212 | 358 | 78 | 0 | 1 | 358 | 1 | 358 | 0.0 | 575 |
| Msa0024890 | AT4G26520.1 | 73.464 | 358 | 95 | 0 | 1 | 358 | 1 | 358 | 0.0 | 535 |
| Msa0024890 | AT4G26520.3 | 73.596 | 356 | 94 | 0 | 1 | 356 | 1 | 356 | 0.0 | 530 |
| Msa0024890 | AT4G26520.2 | 73.352 | 349 | 93 | 0 | 10 | 358 | 7 | 355 | 0.0 | 520 |
| Msa0024890 | AT4G26520.4 | 73.352 | 349 | 93 | 0 | 10 | 358 | 7 | 355 | 0.0 | 520 |
| Msa0024890 | AT2G36460.3 | 88.390 | 267 | 31 | 0 | 92 | 358 | 1 | 267 | 3.32e-176 | 490 |
| Msa0024890 | AT2G36460.2 | 88.390 | 267 | 31 | 0 | 92 | 358 | 1 | 267 | 3.32e-176 | 490 |
| Msa0024890 | AT5G03690.3 | 87.640 | 267 | 32 | 1 | 93 | 358 | 1 | 267 | 3.92e-164 | 459 |
| Msa0024890 | AT5G03690.4 | 87.640 | 267 | 32 | 1 | 93 | 358 | 1 | 267 | 3.92e-164 | 459 |
| Msa0024890 | AT4G38970.1 | 55.650 | 354 | 152 | 4 | 6 | 358 | 49 | 398 | 1.05e-132 | 385 |
| Msa0024890 | AT2G21330.1 | 54.520 | 354 | 156 | 4 | 6 | 358 | 50 | 399 | 1.12e-129 | 377 |
| Msa0024890 | AT2G01140.1 | 55.114 | 352 | 153 | 4 | 8 | 358 | 44 | 391 | 3.50e-129 | 375 |
| Msa0024890 | AT2G21330.3 | 52.542 | 354 | 153 | 5 | 6 | 358 | 50 | 389 | 1.56e-120 | 353 |
| Msa0024890 | AT4G38970.2 | 55.598 | 259 | 113 | 2 | 6 | 263 | 49 | 306 | 9.58e-94 | 285 |
| Msa0024890 | AT2G21330.2 | 53.668 | 259 | 118 | 2 | 6 | 263 | 50 | 307 | 1.67e-91 | 276 |
Find 108 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTCTGATTGAACTTGTTT+TGG | 0.229590 | 1_1:-47729098 | Msa0024890:three_prime_UTR |
| ATTGCCAATGCTGCTTATAT+TGG | 0.273936 | 1_1:-47730766 | Msa0024890:CDS |
| TGGACTCTTACATTCTCTTA+TGG | 0.280031 | 1_1:-47729328 | Msa0024890:CDS |
| AGCAATGCAGCTTGAGCTTT+AGG | 0.286122 | 1_1:+47729250 | None:intergenic |
| CTCAAGCTGCATTGCTTGTT+AGG | 0.288958 | 1_1:-47729243 | Msa0024890:CDS |
| GATCCTGGTGTAACCATATT+AGG | 0.309736 | 1_1:+47729520 | None:intergenic |
| GAAGAAAGCTGGAGTTCTTC+CGG | 0.325790 | 1_1:-47729917 | Msa0024890:CDS |
| GACAAGGGAGATGGTTCATT+TGG | 0.333091 | 1_1:+47729745 | None:intergenic |
| AGCAGCAAGGATACCCTTTC+CGG | 0.352251 | 1_1:+47730738 | None:intergenic |
| TAATGCAATGAACAAACTTA+AGG | 0.360057 | 1_1:-47729362 | Msa0024890:CDS |
| ATAACCTCAGGAGCAACTTT+AGG | 0.366412 | 1_1:+47729490 | None:intergenic |
| CCGGTGCAAGGTTCGCTAAA+TGG | 0.381985 | 1_1:-47729789 | Msa0024890:CDS |
| TTGTGGTAAAGTATCAATAA+TGG | 0.382123 | 1_1:-47729006 | Msa0024890:three_prime_UTR |
| TTCAGAGTCTCTTCATGTTA+AGG | 0.387381 | 1_1:-47729155 | Msa0024890:CDS |
| TCAAGCTGAACTGGCTTGAC+TGG | 0.390088 | 1_1:-47728981 | Msa0024890:three_prime_UTR |
| AGTTGTATGCATCATGGTTA+TGG | 0.395562 | 1_1:-47729075 | Msa0024890:three_prime_UTR |
| GTTGAACTTGCCGGCACAAA+TGG | 0.411220 | 1_1:-47729871 | Msa0024890:CDS |
| GATGAATCTACTGGCACAAT+TGG | 0.412825 | 1_1:-47730715 | Msa0024890:CDS |
| CGTTCTTGCAGCATGTTACA+AGG | 0.413588 | 1_1:-47729587 | Msa0024890:CDS |
| GAACTCTTGTTCACTGCCCC+TGG | 0.414062 | 1_1:-47730634 | Msa0024890:CDS |
| AAGAAAGCTGGAGTTCTTCC+GGG | 0.415915 | 1_1:-47729916 | Msa0024890:CDS |
| AATGCAATGAACAAACTTAA+GGG | 0.427010 | 1_1:-47729361 | Msa0024890:CDS |
| GACCATCATGTTCTTCTTGA+AGG | 0.430660 | 1_1:-47729556 | Msa0024890:CDS |
| AGAATCTCAGGCTCTACAAT+TGG | 0.433301 | 1_1:+47729658 | None:intergenic |
| ATAATGGCTTCAAGCTGAAC+TGG | 0.434807 | 1_1:-47728990 | Msa0024890:three_prime_UTR |
| CAAAGCTCGGACTGTGTGTT+GGG | 0.435174 | 1_1:+47729465 | None:intergenic |
| AAGGGAACCGTTGAACTTGC+CGG | 0.435648 | 1_1:-47729880 | Msa0024890:CDS |
| CTTGAAAGAAGACATGTTAG+TGG | 0.447312 | 1_1:+47732060 | None:intergenic |
| GCAGCAAGGATACCCTTTCC+GGG | 0.463973 | 1_1:+47730739 | None:intergenic |
| CCCTTGTCAACCTTGATACC+CGG | 0.464933 | 1_1:+47729898 | None:intergenic |
| GCTGCTTATATTGGCTCTCC+CGG | 0.465324 | 1_1:-47730757 | Msa0024890:CDS |
| AGAAACCACAACTCAAGGTT+TGG | 0.472063 | 1_1:-47729848 | Msa0024890:CDS |
| AACTTAAGGGAAAGAAGCCT+TGG | 0.474897 | 1_1:-47729348 | Msa0024890:CDS |
| CAAATACTAATATGTTAAAG+AGG | 0.476989 | 1_1:-47729128 | Msa0024890:exon |
| TGGAGTTCTTCCGGGTATCA+AGG | 0.478690 | 1_1:-47729908 | Msa0024890:CDS |
| GATCCATCCACTAGAATCTC+AGG | 0.488146 | 1_1:+47729646 | None:intergenic |
| GCCGTCATATGCCAAGAGAA+TGG | 0.489726 | 1_1:-47729688 | Msa0024890:CDS |
| TGGCGTGCCGTGCTAAAGAT+TGG | 0.491838 | 1_1:-47729769 | Msa0024890:CDS |
| TTGGAACCAAACCATTCTCT+TGG | 0.499681 | 1_1:+47729677 | None:intergenic |
| ACTTCAGCAAAGTACTCTTA+AGG | 0.501897 | 1_1:-47729299 | Msa0024890:CDS |
| TATATTGGCTCTCCCGGAAA+GGG | 0.502381 | 1_1:-47730751 | Msa0024890:CDS |
| TTCTTCAACACATCCACAAA+GGG | 0.502730 | 1_1:+47729934 | None:intergenic |
| GCAAAGTACTCTTAAGGCAT+GGG | 0.512733 | 1_1:-47729293 | Msa0024890:CDS |
| GTTGCGAACCGTTCCTGCCG+CGG | 0.513144 | 1_1:-47729443 | Msa0024890:CDS |
| GTGTGTTGGGCTATAACCTC+AGG | 0.515555 | 1_1:+47729478 | None:intergenic |
| CTTGCTGCTGATGAATCTAC+TGG | 0.520412 | 1_1:-47730724 | Msa0024890:CDS |
| TCGTGGATTGACAAGGGAGA+TGG | 0.521733 | 1_1:+47729736 | None:intergenic |
| ACAAAGCTCGGACTGTGTGT+TGG | 0.522609 | 1_1:+47729464 | None:intergenic |
| CTCTTACATTCTCTTATGGA+AGG | 0.525023 | 1_1:-47729324 | Msa0024890:CDS |
| GTGGATGTGTTGAAGAAAGC+TGG | 0.525235 | 1_1:-47729928 | Msa0024890:CDS |
| ACTATAGCAGGAACCGCGGC+AGG | 0.528273 | 1_1:+47729430 | None:intergenic |
| TGTGGTTTCTCCATTTGTGC+CGG | 0.528303 | 1_1:+47729861 | None:intergenic |
| AGCAGGAACCGCGGCAGGAA+CGG | 0.528619 | 1_1:+47729435 | None:intergenic |
| CTGAGGCAGTCTAAACAACC+AGG | 0.529230 | 1_1:+47730616 | None:intergenic |
| AGCAAAGTACTCTTAAGGCA+TGG | 0.530894 | 1_1:-47729294 | Msa0024890:CDS |
| TAGAGAAGACAAGTAAGAAG+AGG | 0.536198 | 1_1:+47732144 | None:intergenic |
| TAAGAGAATGTAAGAGTCCA+AGG | 0.537565 | 1_1:+47729331 | None:intergenic |
| CTCTCCTAAAGTTGCTCCTG+AGG | 0.537898 | 1_1:-47729494 | Msa0024890:CDS |
| GCAACTCTAGGAACTTATCA+AGG | 0.543212 | 1_1:-47729202 | Msa0024890:CDS |
| TCAATCCACGAAAACGCCTA+CGG | 0.549910 | 1_1:-47729724 | Msa0024890:CDS |
| ACTTTAGGAGAGTCTGATCC+TGG | 0.549951 | 1_1:+47729505 | None:intergenic |
| ATTTGTGCCGGCAAGTTCAA+CGG | 0.550481 | 1_1:+47729873 | None:intergenic |
| TTATATTGGCTCTCCCGGAA+AGG | 0.551511 | 1_1:-47730752 | Msa0024890:CDS |
| AGAGCCAATATAAGCAGCAT+TGG | 0.554374 | 1_1:+47730762 | None:intergenic |
| CCAGACAAGAAAACTATAGC+AGG | 0.555235 | 1_1:+47729418 | None:intergenic |
| ACCATTCTCTTGGCATATGA+CGG | 0.555382 | 1_1:+47729687 | None:intergenic |
| GAGCCTGAGATTCTAGTGGA+TGG | 0.555574 | 1_1:-47729649 | Msa0024890:CDS |
| CCATTTAGCGAACCTTGCAC+CGG | 0.555662 | 1_1:+47729789 | None:intergenic |
| TGCAAGAAGTACTATGAAGC+CGG | 0.557100 | 1_1:-47729808 | Msa0024890:CDS |
| TCTTTCAAGAGCAAATATGA+AGG | 0.558115 | 1_1:-47732046 | Msa0024890:intron |
| ACTTTCAGTACATAGAATGA+TGG | 0.558514 | 1_1:+47728733 | None:intergenic |
| GAACGGTTCGCAACAAAGCT+CGG | 0.563519 | 1_1:+47729452 | None:intergenic |
| GCAAATTCAGAAGCAACTCT+AGG | 0.563691 | 1_1:-47729214 | Msa0024890:CDS |
| GTGTATAGGAGTACCCTTTG+TGG | 0.565160 | 1_1:-47729947 | Msa0024890:intron |
| TATCAAGGTAATGCTAACCT+TGG | 0.568421 | 1_1:-47729187 | Msa0024890:CDS |
| AATGGAGAAACCACAACTCA+AGG | 0.579845 | 1_1:-47729853 | Msa0024890:CDS |
| CATATGCCAAGAGAATGGTT+TGG | 0.584136 | 1_1:-47729683 | Msa0024890:CDS |
| GTCATCCAAACCTTGAGTTG+TGG | 0.586628 | 1_1:+47729843 | None:intergenic |
| AGTACTATGAAGCCGGTGCA+AGG | 0.593122 | 1_1:-47729801 | Msa0024890:CDS |
| ACTCAAGGTTTGGATGACCT+TGG | 0.593476 | 1_1:-47729838 | Msa0024890:CDS |
| TTCGCGAAGAGTACGTCTGT+TGG | 0.596179 | 1_1:+47730654 | None:intergenic |
| ACTTCTTGCACCTCTGACCA+AGG | 0.600417 | 1_1:+47729821 | None:intergenic |
| TCCGGGTATCAAGGTTGACA+AGG | 0.600493 | 1_1:-47729899 | Msa0024890:CDS |
| ATTTGGACCAATCTTTAGCA+CGG | 0.600909 | 1_1:+47729762 | None:intergenic |
| GTTTGGATGACCTTGGTCAG+AGG | 0.601427 | 1_1:-47729831 | Msa0024890:CDS |
| AGAATCCATACTACCTGCAG+CGG | 0.606136 | 1_1:+47730555 | None:intergenic |
| AAGCCTAATATGGTTACACC+AGG | 0.609198 | 1_1:-47729523 | Msa0024890:CDS |
| AAATACTAATATGTTAAAGA+GGG | 0.613786 | 1_1:-47729127 | Msa0024890:exon |
| AAAAGTGTAAAGCAGAAAGT+GGG | 0.614949 | 1_1:-47728832 | Msa0024890:three_prime_UTR |
| TCTTACATTCTCTTATGGAA+GGG | 0.615325 | 1_1:-47729323 | Msa0024890:CDS |
| TGTAGAGCCTGAGATTCTAG+TGG | 0.617102 | 1_1:-47729653 | Msa0024890:CDS |
| CAGTAGATTCATCAGCAGCA+AGG | 0.619396 | 1_1:+47730725 | None:intergenic |
| TTTCTTCAACACATCCACAA+AGG | 0.625245 | 1_1:+47729933 | None:intergenic |
| GTCTGGTGGACAAAGTGAAG+AGG | 0.625664 | 1_1:-47729401 | Msa0024890:CDS |
| AGTACTCTTAAGGCATGGGG+TGG | 0.629413 | 1_1:-47729289 | Msa0024890:CDS |
| GGTTGTTTAGACTGCCTCAG+TGG | 0.642712 | 1_1:-47730613 | Msa0024890:CDS |
| TACCTTCAAGAAGAACATGA+TGG | 0.642921 | 1_1:+47729554 | None:intergenic |
| ATATGTTAAAGAGGGTTGTG+AGG | 0.648981 | 1_1:-47729119 | Msa0024890:three_prime_UTR |
| CAAAGTACTCTTAAGGCATG+GGG | 0.654273 | 1_1:-47729292 | Msa0024890:CDS |
| GGTAATGCTAACCTTGGTGA+TGG | 0.655737 | 1_1:-47729181 | Msa0024890:CDS |
| CCGGGTATCAAGGTTGACAA+GGG | 0.663397 | 1_1:-47729898 | Msa0024890:CDS |
| TGAGGCAGTCTAAACAACCA+GGG | 0.687038 | 1_1:+47730617 | None:intergenic |
| GAAAACTATAGCAGGAACCG+CGG | 0.691811 | 1_1:+47729426 | None:intergenic |
| GCGATTCGCTAGCATCAATG+TGG | 0.695493 | 1_1:-47730689 | Msa0024890:CDS |
| GAGGCAGTCTAAACAACCAG+GGG | 0.707381 | 1_1:+47730618 | None:intergenic |
| ACTCTGAAGCACCATCACCA+AGG | 0.713624 | 1_1:+47729170 | None:intergenic |
| GGCATAACGAGCTAAACCGT+AGG | 0.727129 | 1_1:+47729708 | None:intergenic |
| CGAACAAGATAACACCACTG+AGG | 0.795503 | 1_1:+47730599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAAAAATCAAA+AGG | + | chr1_1:47729400-47729419 | None:intergenic | 10.0% |
| !!! | TTTTTTTCTTTTCGTTTTAT+AGG | - | chr1_1:47728980-47728999 | Msa0024890:three_prime_UTR | 15.0% |
| !!! | ATCTTCTTTATGAAATATTT+TGG | - | chr1_1:47730046-47730065 | Msa0024890:intron | 15.0% |
| !!! | TTTTAATCTTTCATAGATAT+CGG | - | chr1_1:47730538-47730557 | Msa0024890:intron | 15.0% |
| !! | TTAAATAAGTAAATCCAAAA+AGG | + | chr1_1:47730572-47730591 | None:intergenic | 15.0% |
| !!! | ACTTATTTAAAGTAATCTAT+TGG | - | chr1_1:47730582-47730601 | Msa0024890:CDS | 15.0% |
| !! | AAATACTAATATGTTAAAGA+GGG | - | chr1_1:47731836-47731855 | Msa0024890:intron | 15.0% |
| !! | TAAAAAAAGCTAAATTCAAA+GGG | + | chr1_1:47732188-47732207 | None:intergenic | 15.0% |
| !! | AAGAGAAAGTAAAAAACAAT+GGG | + | chr1_1:47728744-47728763 | None:intergenic | 20.0% |
| !! | AAAGAGAAAGTAAAAAACAA+TGG | + | chr1_1:47728745-47728764 | None:intergenic | 20.0% |
| !!! | TGAGTTTTGAAGATTTATAA+AGG | + | chr1_1:47728795-47728814 | None:intergenic | 20.0% |
| !!! | TTCTAAAAGTAGTAAAAAAG+AGG | - | chr1_1:47729302-47729321 | Msa0024890:CDS | 20.0% |
| !!! | AAGTGAAAGAAATGATATTT+TGG | - | chr1_1:47729346-47729365 | Msa0024890:CDS | 20.0% |
| !!! | TACTTTGTTTGACAAAATTA+CGG | - | chr1_1:47729620-47729639 | Msa0024890:CDS | 20.0% |
| !!! | TCTCAGATTAAATTTTCATA+TGG | + | chr1_1:47729796-47729815 | None:intergenic | 20.0% |
| !!! | AATGTTTATTTTGAATTAGC+AGG | - | chr1_1:47730485-47730504 | Msa0024890:intron | 20.0% |
| !! | AATAAACTTAAAACAGCTTA+AGG | + | chr1_1:47730654-47730673 | None:intergenic | 20.0% |
| !!! | AAATTTTGAAAGAAAAGACA+TGG | + | chr1_1:47730836-47730855 | None:intergenic | 20.0% |
| !! | CAAATACTAATATGTTAAAG+AGG | - | chr1_1:47731835-47731854 | Msa0024890:intron | 20.0% |
| !!! | AATAGTGTTTGTTTTTGTTT+AGG | - | chr1_1:47731930-47731949 | Msa0024890:intron | 20.0% |
| !! | AAAAAAAGCTAAATTCAAAG+GGG | + | chr1_1:47732187-47732206 | None:intergenic | 20.0% |
| !! | CTAAAAAAAGCTAAATTCAA+AGG | + | chr1_1:47732189-47732208 | None:intergenic | 20.0% |
| !!! | CTTTGAATTTAGCTTTTTTT+AGG | - | chr1_1:47732187-47732206 | Msa0024890:five_prime_UTR | 20.0% |
| ! | TCAAGTAAAAATATGTCATG+TGG | - | chr1_1:47729228-47729247 | Msa0024890:CDS | 25.0% |
| ! | AGTAGTAAAAAAGAGGAAAA+AGG | - | chr1_1:47729309-47729328 | Msa0024890:CDS | 25.0% |
| !! | TTTTGGCATCAAAATTTTGA+TGG | - | chr1_1:47729363-47729382 | Msa0024890:CDS | 25.0% |
| ! | TTCTTAGTGTATGTTTCAAT+TGG | + | chr1_1:47729729-47729748 | None:intergenic | 25.0% |
| ! | GAAACATACACTAAGAAATA+AGG | - | chr1_1:47729732-47729751 | Msa0024890:CDS | 25.0% |
| ! | GTTCGATTCATAAAACTAAA+GGG | - | chr1_1:47729754-47729773 | Msa0024890:CDS | 25.0% |
| ! | AATTAAGATGTTTGACTCTT+TGG | + | chr1_1:47729854-47729873 | None:intergenic | 25.0% |
| !! | TGAAAAGCTTAACTCAATTT+TGG | - | chr1_1:47730004-47730023 | Msa0024890:intron | 25.0% |
| !!! | TATTTTGGAAAAAAGTTGCT+AGG | - | chr1_1:47730061-47730080 | Msa0024890:intron | 25.0% |
| !! | AATTTTGTACTTACTTCTTG+TGG | - | chr1_1:47730091-47730110 | Msa0024890:intron | 25.0% |
| !! | TCTATTTGTTGAAGTTTCTA+AGG | - | chr1_1:47730148-47730167 | Msa0024890:intron | 25.0% |
| !! | ATATAAGCTATAAACCGTTT+TGG | + | chr1_1:47730702-47730721 | None:intergenic | 25.0% |
| ! | TAATGCAATGAACAAACTTA+AGG | - | chr1_1:47731601-47731620 | Msa0024890:intron | 25.0% |
| ! | AATGCAATGAACAAACTTAA+GGG | - | chr1_1:47731602-47731621 | Msa0024890:intron | 25.0% |
| !! | TTGTGGTAAAGTATCAATAA+TGG | - | chr1_1:47731957-47731976 | Msa0024890:intron | 25.0% |
| !!! | TTTTTTGTTACACACACTTT+TGG | + | chr1_1:47732115-47732134 | None:intergenic | 25.0% |
| ! | AAAAAAGCTAAATTCAAAGG+GGG | + | chr1_1:47732186-47732205 | None:intergenic | 25.0% |
| TCTTTCAAGAGCAAATATGA+AGG | - | chr1_1:47728917-47728936 | Msa0024890:three_prime_UTR | 30.0% | |
| ! | TTCATCATCTAGTGTGTTTT+TGG | - | chr1_1:47728950-47728969 | Msa0024890:three_prime_UTR | 30.0% |
| CATGAATGATCAAGAAACAA+AGG | + | chr1_1:47729015-47729034 | None:intergenic | 30.0% | |
| ! | ATGTTACACTAGCTTCATTT+AGG | - | chr1_1:47729032-47729051 | Msa0024890:three_prime_UTR | 30.0% |
| ! | CAGAACTAGTTGAGTATTTT+GGG | - | chr1_1:47729203-47729222 | Msa0024890:CDS | 30.0% |
| ! | ATTTTTGCCAAAAATTACCG+TGG | - | chr1_1:47729676-47729695 | Msa0024890:CDS | 30.0% |
| ! | CTATTTACCACGGTAATTTT+TGG | + | chr1_1:47729686-47729705 | None:intergenic | 30.0% |
| GGTTCGATTCATAAAACTAA+AGG | - | chr1_1:47729753-47729772 | Msa0024890:CDS | 30.0% | |
| AATCGTTGACATCTAAATCT+AGG | + | chr1_1:47730519-47730538 | None:intergenic | 30.0% | |
| !! | TTTCATAGATATCGGCTTTA+AGG | - | chr1_1:47730546-47730565 | Msa0024890:intron | 30.0% |
| TAAACACTTACGAGACTATT+TGG | - | chr1_1:47730607-47730626 | Msa0024890:CDS | 30.0% | |
| TTTATTTCCATATGTTCTCC+AGG | - | chr1_1:47730668-47730687 | Msa0024890:CDS | 30.0% | |
| TTATTTCCATATGTTCTCCA+GGG | - | chr1_1:47730669-47730688 | Msa0024890:CDS | 30.0% | |
| TAAATAAGCGCTTCTCATAT+AGG | + | chr1_1:47730782-47730801 | None:intergenic | 30.0% | |
| TTTGAAAGAAAAGACATGGA+AGG | + | chr1_1:47730832-47730851 | None:intergenic | 30.0% | |
| ACAGTTGAGAAAAAAGTTAG+AGG | + | chr1_1:47730998-47731017 | None:intergenic | 30.0% | |
| !!! | CTTTTTTCTCAACTGTGTAT+AGG | - | chr1_1:47731002-47731021 | Msa0024890:intron | 30.0% |
| !!! | TACTCTTTTGAAGCCTAATA+TGG | - | chr1_1:47731430-47731449 | Msa0024890:intron | 30.0% |
| TCTTACATTCTCTTATGGAA+GGG | - | chr1_1:47731640-47731659 | Msa0024890:intron | 30.0% | |
| !!! | GTGTTTGTTTTTGTTTAGGT+TGG | - | chr1_1:47731934-47731953 | Msa0024890:intron | 30.0% |
| !! | CTGGCATTTATTTTTCAACA+TGG | - | chr1_1:47732001-47732020 | Msa0024890:intron | 30.0% |
| GTTGTGTGAAAAATGTATGA+TGG | + | chr1_1:47732049-47732068 | None:intergenic | 30.0% | |
| ! | AAAAAGTGTAAAGCAGAAAG+TGG | - | chr1_1:47732130-47732149 | Msa0024890:five_prime_UTR | 30.0% |
| ! | AAAAGTGTAAAGCAGAAAGT+GGG | - | chr1_1:47732131-47732150 | Msa0024890:five_prime_UTR | 30.0% |
| ! | TAGAATGATGGAAAAACAAG+TGG | + | chr1_1:47732221-47732240 | None:intergenic | 30.0% |
| ACTTTCAGTACATAGAATGA+TGG | + | chr1_1:47732233-47732252 | None:intergenic | 30.0% | |
| TAGAGAAGACAAGTAAGAAG+AGG | + | chr1_1:47728822-47728841 | None:intergenic | 35.0% | |
| !!! | GTTTGTTTTGTGTGATGGTT+TGG | + | chr1_1:47728849-47728868 | None:intergenic | 35.0% |
| !!! | CTTGTGTTTGTTTTGTGTGA+TGG | + | chr1_1:47728854-47728873 | None:intergenic | 35.0% |
| CTTGAAAGAAGACATGTTAG+TGG | + | chr1_1:47728906-47728925 | None:intergenic | 35.0% | |
| ! | CACTAGCTTCATTTAGGTAT+CGG | - | chr1_1:47729038-47729057 | Msa0024890:three_prime_UTR | 35.0% |
| ACACTCTTCTCTATTCATCT+AGG | + | chr1_1:47729125-47729144 | None:intergenic | 35.0% | |
| ! | GCAGAACTAGTTGAGTATTT+TGG | - | chr1_1:47729202-47729221 | Msa0024890:CDS | 35.0% |
| ! | GACTGCAAACTTTTATACTG+CGG | - | chr1_1:47729260-47729279 | Msa0024890:CDS | 35.0% |
| AACCACATTCTATTAGCTAG+TGG | + | chr1_1:47729563-47729582 | None:intergenic | 35.0% | |
| TTCTATTAGCAACTAGCAGT+TGG | - | chr1_1:47729581-47729600 | Msa0024890:CDS | 35.0% | |
| CTAATAATCCGTGCAACAAA+CGG | - | chr1_1:47729943-47729962 | Msa0024890:intron | 35.0% | |
| TAATAATCCGTGCAACAAAC+GGG | - | chr1_1:47729944-47729963 | Msa0024890:intron | 35.0% | |
| ! | ATTGCCAATGCTGCTTATAT+TGG | - | chr1_1:47730197-47730216 | Msa0024890:intron | 35.0% |
| GTTGACATCTAAATCTAGGA+TGG | + | chr1_1:47730515-47730534 | None:intergenic | 35.0% | |
| TTTAACAAATTCTCGTCGTG+TGG | - | chr1_1:47730854-47730873 | Msa0024890:intron | 35.0% | |
| ATTGAGATGCAAATGCATCA+CGG | + | chr1_1:47730932-47730951 | None:intergenic | 35.0% | |
| TTCTTCAACACATCCACAAA+GGG | + | chr1_1:47731032-47731051 | None:intergenic | 35.0% | |
| TTTCTTCAACACATCCACAA+AGG | + | chr1_1:47731033-47731052 | None:intergenic | 35.0% | |
| ATTTGGACCAATCTTTAGCA+CGG | + | chr1_1:47731204-47731223 | None:intergenic | 35.0% | |
| TACCTTCAAGAAGAACATGA+TGG | + | chr1_1:47731412-47731431 | None:intergenic | 35.0% | |
| TAAGAGAATGTAAGAGTCCA+AGG | + | chr1_1:47731635-47731654 | None:intergenic | 35.0% | |
| TGGACTCTTACATTCTCTTA+TGG | - | chr1_1:47731635-47731654 | Msa0024890:intron | 35.0% | |
| CTCTTACATTCTCTTATGGA+AGG | - | chr1_1:47731639-47731658 | Msa0024890:intron | 35.0% | |
| ! | ACTTCAGCAAAGTACTCTTA+AGG | - | chr1_1:47731664-47731683 | Msa0024890:intron | 35.0% |
| TATCAAGGTAATGCTAACCT+TGG | - | chr1_1:47731776-47731795 | Msa0024890:intron | 35.0% | |
| TTCAGAGTCTCTTCATGTTA+AGG | - | chr1_1:47731808-47731827 | Msa0024890:intron | 35.0% | |
| ATATGTTAAAGAGGGTTGTG+AGG | - | chr1_1:47731844-47731863 | Msa0024890:intron | 35.0% | |
| !!! | TTTTGGAGTTGTATGCATCA+TGG | - | chr1_1:47731882-47731901 | Msa0024890:intron | 35.0% |
| AGTTGTATGCATCATGGTTA+TGG | - | chr1_1:47731888-47731907 | Msa0024890:intron | 35.0% | |
| !!! | TGGTTATGGTGCTATTTTGT+AGG | - | chr1_1:47731902-47731921 | Msa0024890:intron | 35.0% |
| !!! | GGTTATGGTGCTATTTTGTA+GGG | - | chr1_1:47731903-47731922 | Msa0024890:intron | 35.0% |
| !!! | GTTTTTGTTTAGGTTGGTTG+TGG | - | chr1_1:47731940-47731959 | Msa0024890:intron | 35.0% |
| TGGAAAAACAAGTGGAGAAA+AGG | + | chr1_1:47732213-47732232 | None:intergenic | 35.0% | |
| ! | GATGAATAGAGAAGAGTGTG+TGG | - | chr1_1:47729126-47729145 | Msa0024890:exon | 40.0% |
| !! | AGCAAGATTCTAGTCTTGCT+TGG | - | chr1_1:47729526-47729545 | Msa0024890:CDS | 40.0% |
| !! | GCAAGATTCTAGTCTTGCTT+GGG | - | chr1_1:47729527-47729546 | Msa0024890:CDS | 40.0% |
| !! | ATTCTAGTCTTGCTTGGGAT+TGG | - | chr1_1:47729532-47729551 | Msa0024890:CDS | 40.0% |
| CACCACTAGCTAATAGAATG+TGG | - | chr1_1:47729558-47729577 | Msa0024890:CDS | 40.0% | |
| GACAAAATTACGGTCGAATG+TGG | - | chr1_1:47729630-47729649 | Msa0024890:CDS | 40.0% | |
| GGCAGAATCACTATTTACCA+CGG | + | chr1_1:47729696-47729715 | None:intergenic | 40.0% | |
| GTTTCAATTGGCAGCGATTA+TGG | + | chr1_1:47729717-47729736 | None:intergenic | 40.0% | |
| TGAGAGTAGATTGCAATCTC+TGG | - | chr1_1:47729811-47729830 | Msa0024890:CDS | 40.0% | |
| AATAATCCGTGCAACAAACG+GGG | - | chr1_1:47729945-47729964 | Msa0024890:intron | 40.0% | |
| ! | ATTTATCCCCGTTTGTTGCA+CGG | + | chr1_1:47729954-47729973 | None:intergenic | 40.0% |
| AGAGCCAATATAAGCAGCAT+TGG | + | chr1_1:47730204-47730223 | None:intergenic | 40.0% | |
| GATGAATCTACTGGCACAAT+TGG | - | chr1_1:47730248-47730267 | Msa0024890:intron | 40.0% | |
| CTATATCAAAAAACCGCTGC+AGG | - | chr1_1:47730395-47730414 | Msa0024890:intron | 40.0% | |
| !!! | TATCGGCTTTAAGGCCTTTT+TGG | - | chr1_1:47730555-47730574 | Msa0024890:intron | 40.0% |
| TTGAGATGCAAATGCATCAC+GGG | + | chr1_1:47730931-47730950 | None:intergenic | 40.0% | |
| AATGGAGAAACCACAACTCA+AGG | - | chr1_1:47731110-47731129 | Msa0024890:intron | 40.0% | |
| AGAAACCACAACTCAAGGTT+TGG | - | chr1_1:47731115-47731134 | Msa0024890:intron | 40.0% | |
| !! | TGCAAGAAGTACTATGAAGC+CGG | - | chr1_1:47731155-47731174 | Msa0024890:intron | 40.0% |
| ACCATTCTCTTGGCATATGA+CGG | + | chr1_1:47731279-47731298 | None:intergenic | 40.0% | |
| CATATGCCAAGAGAATGGTT+TGG | - | chr1_1:47731280-47731299 | Msa0024890:intron | 40.0% | |
| TTGGAACCAAACCATTCTCT+TGG | + | chr1_1:47731289-47731308 | None:intergenic | 40.0% | |
| AGAATCTCAGGCTCTACAAT+TGG | + | chr1_1:47731308-47731327 | None:intergenic | 40.0% | |
| GACCATCATGTTCTTCTTGA+AGG | - | chr1_1:47731407-47731426 | Msa0024890:intron | 40.0% | |
| AAGCCTAATATGGTTACACC+AGG | - | chr1_1:47731440-47731459 | Msa0024890:intron | 40.0% | |
| GATCCTGGTGTAACCATATT+AGG | + | chr1_1:47731446-47731465 | None:intergenic | 40.0% | |
| ATAACCTCAGGAGCAACTTT+AGG | + | chr1_1:47731476-47731495 | None:intergenic | 40.0% | |
| CCAGACAAGAAAACTATAGC+AGG | + | chr1_1:47731548-47731567 | None:intergenic | 40.0% | |
| ! | CCTGCTATAGTTTTCTTGTC+TGG | - | chr1_1:47731545-47731564 | Msa0024890:intron | 40.0% |
| ! | GCTATAGTTTTCTTGTCTGG+TGG | - | chr1_1:47731548-47731567 | Msa0024890:intron | 40.0% |
| AACTTAAGGGAAAGAAGCCT+TGG | - | chr1_1:47731615-47731634 | Msa0024890:intron | 40.0% | |
| ! | AGCAAAGTACTCTTAAGGCA+TGG | - | chr1_1:47731669-47731688 | Msa0024890:intron | 40.0% |
| ! | GCAAAGTACTCTTAAGGCAT+GGG | - | chr1_1:47731670-47731689 | Msa0024890:intron | 40.0% |
| ! | CAAAGTACTCTTAAGGCATG+GGG | - | chr1_1:47731671-47731690 | Msa0024890:intron | 40.0% |
| GCAAATTCAGAAGCAACTCT+AGG | - | chr1_1:47731749-47731768 | Msa0024890:intron | 40.0% | |
| ! | GCAACTCTAGGAACTTATCA+AGG | - | chr1_1:47731761-47731780 | Msa0024890:intron | 40.0% |
| !! | GGCTCTGATTGAACTTGTTT+TGG | - | chr1_1:47731865-47731884 | Msa0024890:intron | 40.0% |
| ATAATGGCTTCAAGCTGAAC+TGG | - | chr1_1:47731973-47731992 | Msa0024890:intron | 40.0% | |
| GCAATCTCTGGTGATACTTG+AGG | - | chr1_1:47729823-47729842 | Msa0024890:CDS | 45.0% | |
| !! | TTATATTGGCTCTCCCGGAA+AGG | - | chr1_1:47730211-47730230 | Msa0024890:intron | 45.0% |
| !! | TATATTGGCTCTCCCGGAAA+GGG | - | chr1_1:47730212-47730231 | Msa0024890:intron | 45.0% |
| CAGTAGATTCATCAGCAGCA+AGG | + | chr1_1:47730241-47730260 | None:intergenic | 45.0% | |
| CTTGCTGCTGATGAATCTAC+TGG | - | chr1_1:47730239-47730258 | Msa0024890:intron | 45.0% | |
| TGAGGCAGTCTAAACAACCA+GGG | + | chr1_1:47730349-47730368 | None:intergenic | 45.0% | |
| CGAACAAGATAACACCACTG+AGG | + | chr1_1:47730367-47730386 | None:intergenic | 45.0% | |
| AAAAACCGCTGCAGGTAGTA+TGG | - | chr1_1:47730403-47730422 | Msa0024890:intron | 45.0% | |
| AGAATCCATACTACCTGCAG+CGG | + | chr1_1:47730411-47730430 | None:intergenic | 45.0% | |
| ATGCTACCCTGGAGAACATA+TGG | + | chr1_1:47730678-47730697 | None:intergenic | 45.0% | |
| TCCAGGGTAGCATACCAAAA+CGG | - | chr1_1:47730685-47730704 | Msa0024890:CDS | 45.0% | |
| CGTGTGGTAGATGATTGATG+AGG | - | chr1_1:47730870-47730889 | Msa0024890:intron | 45.0% | |
| TAGATGATTGATGAGGTCCG+AGG | - | chr1_1:47730877-47730896 | Msa0024890:intron | 45.0% | |
| ! | TTCCAACTAAGTTGACGCCT+CGG | + | chr1_1:47730897-47730916 | None:intergenic | 45.0% |
| !! | GTGTATAGGAGTACCCTTTG+TGG | - | chr1_1:47731016-47731035 | Msa0024890:intron | 45.0% |
| GTGGATGTGTTGAAGAAAGC+TGG | - | chr1_1:47731035-47731054 | Msa0024890:intron | 45.0% | |
| GAAGAAAGCTGGAGTTCTTC+CGG | - | chr1_1:47731046-47731065 | Msa0024890:intron | 45.0% | |
| AAGAAAGCTGGAGTTCTTCC+GGG | - | chr1_1:47731047-47731066 | Msa0024890:intron | 45.0% | |
| ! | ATTTGTGCCGGCAAGTTCAA+CGG | + | chr1_1:47731093-47731112 | None:intergenic | 45.0% |
| TGTGGTTTCTCCATTTGTGC+CGG | + | chr1_1:47731105-47731124 | None:intergenic | 45.0% | |
| ! | GTCATCCAAACCTTGAGTTG+TGG | + | chr1_1:47731123-47731142 | None:intergenic | 45.0% |
| ACTCAAGGTTTGGATGACCT+TGG | - | chr1_1:47731125-47731144 | Msa0024890:intron | 45.0% | |
| GACAAGGGAGATGGTTCATT+TGG | + | chr1_1:47731221-47731240 | None:intergenic | 45.0% | |
| !! | GCGTTTTCGTGGATTGACAA+GGG | + | chr1_1:47731236-47731255 | None:intergenic | 45.0% |
| TCAATCCACGAAAACGCCTA+CGG | - | chr1_1:47731239-47731258 | Msa0024890:intron | 45.0% | |
| TGTAGAGCCTGAGATTCTAG+TGG | - | chr1_1:47731310-47731329 | Msa0024890:intron | 45.0% | |
| GATCCATCCACTAGAATCTC+AGG | + | chr1_1:47731320-47731339 | None:intergenic | 45.0% | |
| CGTTCTTGCAGCATGTTACA+AGG | - | chr1_1:47731376-47731395 | Msa0024890:intron | 45.0% | |
| ! | ACTTTAGGAGAGTCTGATCC+TGG | + | chr1_1:47731461-47731480 | None:intergenic | 45.0% |
| GAAAACTATAGCAGGAACCG+CGG | + | chr1_1:47731540-47731559 | None:intergenic | 45.0% | |
| AGCAATGCAGCTTGAGCTTT+AGG | + | chr1_1:47731716-47731735 | None:intergenic | 45.0% | |
| CTCAAGCTGCATTGCTTGTT+AGG | - | chr1_1:47731720-47731739 | Msa0024890:intron | 45.0% | |
| GGTAATGCTAACCTTGGTGA+TGG | - | chr1_1:47731782-47731801 | Msa0024890:intron | 45.0% | |
| !! | GCTGCTTATATTGGCTCTCC+CGG | - | chr1_1:47730206-47730225 | Msa0024890:intron | 50.0% |
| AGCAGCAAGGATACCCTTTC+CGG | + | chr1_1:47730228-47730247 | None:intergenic | 50.0% | |
| GCGATTCGCTAGCATCAATG+TGG | - | chr1_1:47730274-47730293 | Msa0024890:intron | 50.0% | |
| ! | TTCGCGAAGAGTACGTCTGT+TGG | + | chr1_1:47730312-47730331 | None:intergenic | 50.0% |
| GAGGCAGTCTAAACAACCAG+GGG | + | chr1_1:47730348-47730367 | None:intergenic | 50.0% | |
| CTGAGGCAGTCTAAACAACC+AGG | + | chr1_1:47730350-47730369 | None:intergenic | 50.0% | |
| GGTTGTTTAGACTGCCTCAG+TGG | - | chr1_1:47730350-47730369 | Msa0024890:intron | 50.0% | |
| !! | ACCGTTTTGGTATGCTACCC+TGG | + | chr1_1:47730689-47730708 | None:intergenic | 50.0% |
| GATGCAAATGCATCACGGGA+AGG | + | chr1_1:47730927-47730946 | None:intergenic | 50.0% | |
| TGGAGTTCTTCCGGGTATCA+AGG | - | chr1_1:47731055-47731074 | Msa0024890:intron | 50.0% | |
| TCCGGGTATCAAGGTTGACA+AGG | - | chr1_1:47731064-47731083 | Msa0024890:intron | 50.0% | |
| CCCTTGTCAACCTTGATACC+CGG | + | chr1_1:47731068-47731087 | None:intergenic | 50.0% | |
| CCGGGTATCAAGGTTGACAA+GGG | - | chr1_1:47731065-47731084 | Msa0024890:intron | 50.0% | |
| AAGGGAACCGTTGAACTTGC+CGG | - | chr1_1:47731083-47731102 | Msa0024890:intron | 50.0% | |
| GTTGAACTTGCCGGCACAAA+TGG | - | chr1_1:47731092-47731111 | Msa0024890:intron | 50.0% | |
| GTTTGGATGACCTTGGTCAG+AGG | - | chr1_1:47731132-47731151 | Msa0024890:intron | 50.0% | |
| ACTTCTTGCACCTCTGACCA+AGG | + | chr1_1:47731145-47731164 | None:intergenic | 50.0% | |
| AGTACTATGAAGCCGGTGCA+AGG | - | chr1_1:47731162-47731181 | Msa0024890:intron | 50.0% | |
| CCATTTAGCGAACCTTGCAC+CGG | + | chr1_1:47731177-47731196 | None:intergenic | 50.0% | |
| ! | TCGTGGATTGACAAGGGAGA+TGG | + | chr1_1:47731230-47731249 | None:intergenic | 50.0% |
| !! | GGCGTTTTCGTGGATTGACA+AGG | + | chr1_1:47731237-47731256 | None:intergenic | 50.0% |
| ! | CTAAACCGTAGGCGTTTTCG+TGG | + | chr1_1:47731247-47731266 | None:intergenic | 50.0% |
| GGCATAACGAGCTAAACCGT+AGG | + | chr1_1:47731258-47731277 | None:intergenic | 50.0% | |
| GCCGTCATATGCCAAGAGAA+TGG | - | chr1_1:47731275-47731294 | Msa0024890:intron | 50.0% | |
| GAGCCTGAGATTCTAGTGGA+TGG | - | chr1_1:47731314-47731333 | Msa0024890:intron | 50.0% | |
| CTCTCCTAAAGTTGCTCCTG+AGG | - | chr1_1:47731469-47731488 | Msa0024890:intron | 50.0% | |
| GTGTGTTGGGCTATAACCTC+AGG | + | chr1_1:47731488-47731507 | None:intergenic | 50.0% | |
| CAAAGCTCGGACTGTGTGTT+GGG | + | chr1_1:47731501-47731520 | None:intergenic | 50.0% | |
| ACAAAGCTCGGACTGTGTGT+TGG | + | chr1_1:47731502-47731521 | None:intergenic | 50.0% | |
| GAACGGTTCGCAACAAAGCT+CGG | + | chr1_1:47731514-47731533 | None:intergenic | 50.0% | |
| ! | GTCTGGTGGACAAAGTGAAG+AGG | - | chr1_1:47731562-47731581 | Msa0024890:intron | 50.0% |
| AGTACTCTTAAGGCATGGGG+TGG | - | chr1_1:47731674-47731693 | Msa0024890:intron | 50.0% | |
| !! | ACTCTGAAGCACCATCACCA+AGG | + | chr1_1:47731796-47731815 | None:intergenic | 50.0% |
| !! | TCAAGCTGAACTGGCTTGAC+TGG | - | chr1_1:47731982-47732001 | Msa0024890:intron | 50.0% |
| GCAGCAAGGATACCCTTTCC+GGG | + | chr1_1:47730227-47730246 | None:intergenic | 55.0% | |
| GAACTCTTGTTCACTGCCCC+TGG | - | chr1_1:47730329-47730348 | Msa0024890:intron | 55.0% | |
| ! | GTCCGAGGCGTCAACTTAGT+TGG | - | chr1_1:47730892-47730911 | Msa0024890:intron | 55.0% |
| CCGGTGCAAGGTTCGCTAAA+TGG | - | chr1_1:47731174-47731193 | Msa0024890:intron | 55.0% | |
| TGGCGTGCCGTGCTAAAGAT+TGG | - | chr1_1:47731194-47731213 | Msa0024890:intron | 55.0% | |
| ACTATAGCAGGAACCGCGGC+AGG | + | chr1_1:47731536-47731555 | None:intergenic | 60.0% | |
| GTTGCGAACCGTTCCTGCCG+CGG | - | chr1_1:47731520-47731539 | Msa0024890:intron | 65.0% | |
| AGCAGGAACCGCGGCAGGAA+CGG | + | chr1_1:47731531-47731550 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 47728732 | 47732253 | 47728732 | ID=Msa0024890;Name=Msa0024890 |
| chr1_1 | mRNA | 47728732 | 47732253 | 47728732 | ID=Msa0024890-mRNA-1;Parent=Msa0024890;Name=Msa0024890-mRNA-1;_AED=0.02;_eAED=0.02;_QI=179|1|1|1|0.5|1|3|409|358 |
| chr1_1 | exon | 47728732 | 47729961 | 47728732 | ID=Msa0024890-mRNA-1:exon:13586;Parent=Msa0024890-mRNA-1 |
| chr1_1 | exon | 47730569 | 47730796 | 47730569 | ID=Msa0024890-mRNA-1:exon:13585;Parent=Msa0024890-mRNA-1 |
| chr1_1 | exon | 47732047 | 47732253 | 47732047 | ID=Msa0024890-mRNA-1:exon:13584;Parent=Msa0024890-mRNA-1 |
| chr1_1 | five_prime_UTR | 47732075 | 47732253 | 47732075 | ID=Msa0024890-mRNA-1:five_prime_utr;Parent=Msa0024890-mRNA-1 |
| chr1_1 | CDS | 47732047 | 47732074 | 47732047 | ID=Msa0024890-mRNA-1:cds;Parent=Msa0024890-mRNA-1 |
| chr1_1 | CDS | 47730569 | 47730796 | 47730569 | ID=Msa0024890-mRNA-1:cds;Parent=Msa0024890-mRNA-1 |
| chr1_1 | CDS | 47729141 | 47729961 | 47729141 | ID=Msa0024890-mRNA-1:cds;Parent=Msa0024890-mRNA-1 |
| chr1_1 | three_prime_UTR | 47728732 | 47729140 | 47728732 | ID=Msa0024890-mRNA-1:three_prime_utr;Parent=Msa0024890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
