Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043120 | XP_013470121.1 | 97.959 | 392 | 3 | 2 | 1 | 388 | 1 | 391 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043120 | sp|Q9ZU52|ALFP3_ARATH | 84.655 | 391 | 57 | 1 | 1 | 388 | 1 | 391 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012780 | Msa0043120 | 0.809476 | 1.857281e-50 | -8.615850e-47 |
| Msa0012790 | Msa0043120 | 0.834205 | 3.428899e-56 | -8.615850e-47 |
| Msa0012810 | Msa0043120 | 0.829842 | 4.104335e-55 | -8.615850e-47 |
| Msa0012820 | Msa0043120 | 0.820399 | 7.002088e-53 | -8.615850e-47 |
| Msa0024890 | Msa0043120 | 0.802044 | 6.763104e-49 | -8.615850e-47 |
| Msa0026930 | Msa0043120 | -0.800614 | 1.326822e-48 | -8.615850e-47 |
| Msa0043120 | Msa0043150 | 0.945724 | 1.786087e-104 | -8.615850e-47 |
| Msa0043120 | Msa0059880 | 0.817872 | 2.631585e-52 | -8.615850e-47 |
| Msa0043120 | Msa0061590 | 0.806571 | 7.709925e-50 | -8.615850e-47 |
| Msa0043120 | Msa0061600 | 0.818442 | 1.956332e-52 | -8.615850e-47 |
| Msa0043120 | Msa0072380 | 0.838992 | 2.067715e-57 | -8.615850e-47 |
| Msa0043120 | Msa0106110 | 0.825580 | 4.337365e-54 | -8.615850e-47 |
| Msa0043120 | Msa0106120 | 0.837045 | 6.552870e-57 | -8.615850e-47 |
| Msa0043120 | Msa0106130 | 0.810011 | 1.424912e-50 | -8.615850e-47 |
| Msa0043120 | Msa0108350 | 0.804225 | 2.392059e-49 | -8.615850e-47 |
| Msa0043120 | Msa0121460 | -0.807772 | 4.293941e-50 | -8.615850e-47 |
| Msa0043120 | Msa0140270 | 0.810577 | 1.075669e-50 | -8.615850e-47 |
| Msa0043120 | Msa0150910 | 0.813427 | 2.573307e-51 | -8.615850e-47 |
| Msa0043120 | Msa0152640 | 0.825697 | 4.068720e-54 | -8.615850e-47 |
| Msa0043120 | Msa0152660 | 0.821389 | 4.144401e-53 | -8.615850e-47 |
| Msa0043120 | Msa0152740 | 0.816691 | 4.853226e-52 | -8.615850e-47 |
| Msa0043120 | Msa0184150 | 0.804886 | 1.741586e-49 | -8.615850e-47 |
| Msa0043120 | Msa0190670 | 0.817318 | 3.509373e-52 | -8.615850e-47 |
| Msa0043120 | Msa0190890 | 0.833334 | 5.662272e-56 | -8.615850e-47 |
| Msa0043120 | Msa0191100 | 0.801437 | 9.008838e-49 | -8.615850e-47 |
| Msa0043120 | Msa0199740 | -0.804049 | 2.603105e-49 | -8.615850e-47 |
| Msa0043120 | Msa0212490 | 0.809269 | 2.056683e-50 | -8.615850e-47 |
| Msa0043120 | Msa0212550 | 0.829493 | 4.990755e-55 | -8.615850e-47 |
| Msa0043120 | Msa0233210 | 0.803565 | 3.281449e-49 | -8.615850e-47 |
| Msa0043120 | Msa0252880 | 0.811448 | 6.964351e-51 | -8.615850e-47 |
| Msa0043120 | Msa0252930 | 0.824161 | 9.378937e-54 | -8.615850e-47 |
| Msa0043120 | Msa0261400 | 0.809171 | 2.158768e-50 | -8.615850e-47 |
| Msa0043120 | Msa0274250 | 0.800098 | 1.689818e-48 | -8.615850e-47 |
| Msa0043120 | Msa0290800 | 0.805528 | 1.278027e-49 | -8.615850e-47 |
| Msa0043120 | Msa0313140 | 0.803425 | 3.507269e-49 | -8.615850e-47 |
| Msa0043120 | Msa0319690 | 0.803588 | 3.245563e-49 | -8.615850e-47 |
| Msa0043120 | Msa0336630 | 0.809163 | 2.167492e-50 | -8.615850e-47 |
| Msa0043120 | Msa0349910 | 0.803615 | 3.203442e-49 | -8.615850e-47 |
| Msa0043120 | Msa0380680 | 0.809144 | 2.187872e-50 | -8.615850e-47 |
| Msa0043120 | Msa0407330 | 0.835865 | 1.308244e-56 | -8.615850e-47 |
| Msa0043120 | Msa0409530 | 0.804402 | 2.198094e-49 | -8.615850e-47 |
| Msa0043120 | Msa0433680 | 0.813236 | 2.834367e-51 | -8.615850e-47 |
| Msa0043120 | Msa0452770 | 0.800399 | 1.467987e-48 | -8.615850e-47 |
| Msa0043120 | Msa0472390 | 0.819890 | 9.155416e-53 | -8.615850e-47 |
| Msa0043120 | Msa0477560 | 0.805420 | 1.346399e-49 | -8.615850e-47 |
| Msa0043120 | Msa0487100 | 0.805417 | 1.348620e-49 | -8.615850e-47 |
| Msa0043120 | Msa0491770 | 0.802793 | 4.740298e-49 | -8.615850e-47 |
| Msa0043120 | Msa0529360 | 0.825618 | 4.248843e-54 | -8.615850e-47 |
| Msa0043120 | Msa0545230 | -0.815313 | 9.853992e-52 | -8.615850e-47 |
| Msa0043120 | Msa0580100 | 0.809793 | 1.587358e-50 | -8.615850e-47 |
| Msa0043120 | Msa0591490 | 0.800573 | 1.352674e-48 | -8.615850e-47 |
| Msa0043120 | Msa0600820 | -0.813828 | 2.100073e-51 | -8.615850e-47 |
| Msa0043120 | Msa0618490 | -0.820708 | 5.947602e-53 | -8.615850e-47 |
| Msa0043120 | Msa0624930 | 0.812689 | 3.737121e-51 | -8.615850e-47 |
| Msa0043120 | Msa0643840 | 0.805817 | 1.111486e-49 | -8.615850e-47 |
| Msa0043120 | Msa0661040 | -0.804302 | 2.305336e-49 | -8.615850e-47 |
| Msa0043120 | Msa0668220 | 0.807766 | 4.305018e-50 | -8.615850e-47 |
| Msa0043120 | Msa0670360 | 0.806513 | 7.931743e-50 | -8.615850e-47 |
| Msa0043120 | Msa0678620 | 0.812768 | 3.589605e-51 | -8.615850e-47 |
| Msa0043120 | Msa0720660 | 0.825616 | 4.254689e-54 | -8.615850e-47 |
| Msa0043120 | Msa0768670 | 0.812473 | 4.165159e-51 | -8.615850e-47 |
| Msa0043120 | Msa0768720 | 0.820087 | 8.254195e-53 | -8.615850e-47 |
| Msa0043120 | Msa0786360 | 0.804372 | 2.229317e-49 | -8.615850e-47 |
| Msa0043120 | Msa0814160 | 0.818600 | 1.801528e-52 | -8.615850e-47 |
| Msa0043120 | Msa0822410 | 0.824178 | 9.289078e-54 | -8.615850e-47 |
| Msa0043120 | Msa0841800 | 0.820394 | 7.020743e-53 | -8.615850e-47 |
| Msa0043120 | Msa0846070 | -0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0043120 | Msa0861730 | 0.810819 | 9.536143e-51 | -8.615850e-47 |
| Msa0043120 | Msa0882880 | 0.818609 | 1.792520e-52 | -8.615850e-47 |
| Msa0043120 | Msa0898830 | -0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0043120 | Msa0902340 | 0.807123 | 5.893345e-50 | -8.615850e-47 |
| Msa0043120 | Msa0910250 | 0.819971 | 8.775240e-53 | -8.615850e-47 |
| Msa0043120 | Msa0913550 | 0.804076 | 2.569494e-49 | -8.615850e-47 |
| Msa0043120 | Msa0932930 | 0.803088 | 4.118437e-49 | -8.615850e-47 |
| Msa0043120 | Msa0948050 | 0.802369 | 5.795604e-49 | -8.615850e-47 |
| Msa0043120 | Msa0985290 | 0.804587 | 2.011390e-49 | -8.615850e-47 |
| Msa0043120 | Msa0986560 | -0.808142 | 3.581237e-50 | -8.615850e-47 |
| Msa0043120 | Msa1006170 | 0.841152 | 5.651387e-58 | -8.615850e-47 |
| Msa0043120 | Msa1006220 | 0.802685 | 4.989138e-49 | -8.615850e-47 |
| Msa0043120 | Msa1024350 | 0.805980 | 1.027319e-49 | -8.615850e-47 |
| Msa0043120 | Msa1026170 | 0.800241 | 1.580955e-48 | -8.615850e-47 |
| Msa0043120 | Msa1040730 | 0.816911 | 4.330967e-52 | -8.615850e-47 |
| Msa0043120 | Msa1061670 | 0.807102 | 5.955815e-50 | -8.615850e-47 |
| Msa0043120 | Msa1076830 | 0.801474 | 8.852768e-49 | -8.615850e-47 |
| Msa0043120 | Msa1109880 | 0.820634 | 6.182733e-53 | -8.615850e-47 |
| Msa0043120 | Msa1109890 | 0.817805 | 2.725312e-52 | -8.615850e-47 |
| Msa0043120 | Msa1116850 | -0.821574 | 3.756121e-53 | -8.615850e-47 |
| Msa0043120 | Msa1134020 | 0.803221 | 3.865709e-49 | -8.615850e-47 |
| Msa0043120 | Msa1145930 | -0.822857 | 1.892487e-53 | -8.615850e-47 |
| Msa0043120 | Msa1214960 | 0.806302 | 8.788109e-50 | -8.615850e-47 |
| Msa0043120 | Msa1215000 | 0.811312 | 7.456308e-51 | -8.615850e-47 |
| Msa0043120 | Msa1216600 | 0.827544 | 1.475482e-54 | -8.615850e-47 |
| Msa0043120 | Msa1296870 | 0.814533 | 1.467839e-51 | -8.615850e-47 |
| Msa0043120 | Msa1300610 | 0.800060 | 1.720779e-48 | -8.615850e-47 |
| Msa0043120 | Msa1313840 | 0.800872 | 1.175706e-48 | -8.615850e-47 |
| Msa0043120 | Msa1323120 | 0.806151 | 9.455403e-50 | -8.615850e-47 |
| Msa0043120 | Msa1332110 | 0.801070 | 1.070881e-48 | -8.615850e-47 |
| Msa0043120 | Msa1336100 | 0.909033 | 8.900709e-82 | -8.615850e-47 |
| Msa0043120 | Msa1357860 | 0.811516 | 6.733681e-51 | -8.615850e-47 |
| Msa0043120 | Msa1370930 | 0.800581 | 1.347439e-48 | -8.615850e-47 |
| Msa0043120 | Msa1373560 | 0.813190 | 2.901445e-51 | -8.615850e-47 |
| Msa0043120 | Msa1376070 | 0.801504 | 8.725974e-49 | -8.615850e-47 |
| Msa0043120 | Msa1377520 | 0.800729 | 1.257072e-48 | -8.615850e-47 |
| Msa0043120 | Msa1406840 | 0.806111 | 9.637805e-50 | -8.615850e-47 |
| Msa0043120 | Msa1407670 | 0.814003 | 1.922004e-51 | -8.615850e-47 |
| Msa0043120 | Msa1449770 | 0.820219 | 7.699162e-53 | -8.615850e-47 |
| Msa0043120 | Msa1451660 | 0.921553 | 3.084503e-88 | -8.615850e-47 |
| Msa0043120 | Msa1459610 | 0.817488 | 3.212721e-52 | -8.615850e-47 |
| Msa0043120 | Msa1463590 | 0.807086 | 6.000343e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043120 | MtrunA17_Chr1g0208981 | 97.959 | 392 | 3 | 2 | 1 | 388 | 1 | 391 | 0.0 | 777 |
| Msa0043120 | MtrunA17_Chr4g0035951 | 81.972 | 355 | 64 | 0 | 34 | 388 | 46 | 400 | 0.0 | 613 |
| Msa0043120 | MtrunA17_Chr4g0028361 | 81.690 | 355 | 65 | 0 | 34 | 388 | 46 | 400 | 0.0 | 612 |
| Msa0043120 | MtrunA17_Chr4g0035981 | 81.857 | 237 | 43 | 0 | 152 | 388 | 4 | 240 | 1.43e-146 | 415 |
| Msa0043120 | MtrunA17_Chr7g0265821 | 55.932 | 354 | 151 | 4 | 39 | 388 | 6 | 358 | 1.92e-136 | 394 |
| Msa0043120 | MtrunA17_Chr5g0429051 | 55.085 | 354 | 154 | 4 | 39 | 388 | 6 | 358 | 9.31e-135 | 389 |
| Msa0043120 | MtrunA17_Chr5g0447091 | 55.271 | 351 | 153 | 3 | 41 | 388 | 8 | 357 | 5.94e-134 | 387 |
| Msa0043120 | MtrunA17_Chr1g0179211 | 53.672 | 354 | 159 | 4 | 39 | 388 | 6 | 358 | 1.63e-129 | 376 |
| Msa0043120 | MtrunA17_Chr5g0429031 | 57.561 | 205 | 86 | 1 | 38 | 241 | 46 | 250 | 3.68e-78 | 241 |
| Msa0043120 | MtrunA17_Chr4g0035971 | 76.042 | 96 | 23 | 0 | 33 | 128 | 43 | 138 | 7.40e-44 | 149 |
| Msa0043120 | MtrunA17_Chr5g0429021 | 50.758 | 132 | 61 | 3 | 260 | 388 | 1 | 131 | 5.96e-36 | 128 |
| Msa0043120 | MtrunA17_Chr7g0265811 | 47.253 | 91 | 24 | 1 | 146 | 236 | 22 | 88 | 5.18e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043120 | AT2G01140.1 | 84.655 | 391 | 57 | 1 | 1 | 388 | 1 | 391 | 0.0 | 680 |
| Msa0043120 | AT4G38970.1 | 77.807 | 383 | 80 | 2 | 11 | 388 | 16 | 398 | 0.0 | 617 |
| Msa0043120 | AT2G21330.1 | 75.128 | 390 | 91 | 3 | 5 | 388 | 10 | 399 | 0.0 | 603 |
| Msa0043120 | AT2G21330.3 | 72.564 | 390 | 91 | 4 | 5 | 388 | 10 | 389 | 0.0 | 575 |
| Msa0043120 | AT4G38970.2 | 72.727 | 308 | 72 | 3 | 11 | 306 | 16 | 323 | 3.65e-161 | 457 |
| Msa0043120 | AT2G21330.2 | 73.154 | 298 | 74 | 3 | 5 | 296 | 10 | 307 | 1.63e-158 | 448 |
| Msa0043120 | AT4G26530.1 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.10e-136 | 394 |
| Msa0043120 | AT4G26530.3 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.10e-136 | 394 |
| Msa0043120 | AT4G26530.2 | 56.250 | 352 | 149 | 4 | 41 | 388 | 8 | 358 | 2.10e-136 | 394 |
| Msa0043120 | AT2G36460.1 | 55.650 | 354 | 152 | 4 | 39 | 388 | 6 | 358 | 2.82e-135 | 391 |
| Msa0043120 | AT3G52930.1 | 54.802 | 354 | 155 | 4 | 39 | 388 | 6 | 358 | 2.26e-133 | 386 |
| Msa0043120 | AT5G03690.2 | 55.085 | 354 | 155 | 3 | 39 | 388 | 6 | 359 | 5.35e-132 | 383 |
| Msa0043120 | AT4G26520.1 | 54.802 | 354 | 155 | 4 | 39 | 388 | 6 | 358 | 1.17e-129 | 377 |
| Msa0043120 | AT4G26520.3 | 55.172 | 348 | 152 | 3 | 39 | 383 | 6 | 352 | 1.60e-129 | 376 |
| Msa0043120 | AT5G03690.1 | 55.301 | 349 | 152 | 3 | 44 | 388 | 45 | 393 | 5.79e-129 | 376 |
| Msa0043120 | AT4G26520.2 | 54.986 | 351 | 153 | 4 | 42 | 388 | 6 | 355 | 8.73e-129 | 374 |
| Msa0043120 | AT4G26520.4 | 54.986 | 351 | 153 | 4 | 42 | 388 | 6 | 355 | 8.73e-129 | 374 |
| Msa0043120 | AT2G36460.3 | 55.805 | 267 | 113 | 4 | 126 | 388 | 2 | 267 | 6.91e-99 | 295 |
| Msa0043120 | AT2G36460.2 | 55.805 | 267 | 113 | 4 | 126 | 388 | 2 | 267 | 6.91e-99 | 295 |
| Msa0043120 | AT5G03690.3 | 54.682 | 267 | 117 | 3 | 126 | 388 | 1 | 267 | 3.02e-94 | 283 |
| Msa0043120 | AT5G03690.4 | 54.682 | 267 | 117 | 3 | 126 | 388 | 1 | 267 | 3.02e-94 | 283 |
Find 140 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATATTTGGCAATGGTTTC+TGG | 0.143267 | 1_1:+74139076 | None:intergenic |
| TCTTGGTGTAATAGAGGTTT+TGG | 0.189042 | 1_1:-74138066 | Msa0043120:three_prime_UTR |
| AAGCATGGTTAGTGTATATT+TGG | 0.209752 | 1_1:+74139063 | None:intergenic |
| CTTGACGAACATTTCCTTCT+TGG | 0.217385 | 1_1:+74138270 | None:intergenic |
| GGCTGTTAAGGAAGCGGCCT+GGG | 0.275057 | 1_1:-74139823 | Msa0043120:CDS |
| ACTTCCAGTGTCCTTTCAAT+TGG | 0.291399 | 1_1:+74139220 | None:intergenic |
| TCCCCATCAAGAAGAATTTC+AGG | 0.298792 | 1_1:+74139247 | None:intergenic |
| TGAGCTGCTTCAACATTCTC+AGG | 0.308014 | 1_1:+74138373 | None:intergenic |
| AGGTTAATCGCCAGGCTTAC+AGG | 0.321017 | 1_1:-74140604 | Msa0043120:CDS |
| AGAATTTCAGGCTCAACTAT+TGG | 0.323620 | 1_1:+74139259 | None:intergenic |
| TCCTTCTGCCTTGGCTGTTA+AGG | 0.340996 | 1_1:-74139835 | Msa0043120:CDS |
| CGTGCCATGGGTTGGGACTT+TGG | 0.343951 | 1_1:+74138455 | None:intergenic |
| GAGGTGTCTCTTGTGGCTTT+TGG | 0.347388 | 1_1:-74138227 | Msa0043120:three_prime_UTR |
| CGGTAACGGTACCATGATTC+CGG | 0.350799 | 1_1:+74139015 | None:intergenic |
| TAGGGTTTGGTTCCTCTACC+AGG | 0.359285 | 1_1:-74140070 | Msa0043120:CDS |
| AGCAGCTCAAAAGTCTCTTT+TGG | 0.359867 | 1_1:-74138359 | Msa0043120:CDS |
| CTTCCAGTGTCCTTTCAATT+GGG | 0.368440 | 1_1:+74139221 | None:intergenic |
| GGGAAGCGTTTGGCATCAAT+TGG | 0.374360 | 1_1:-74140641 | Msa0043120:CDS |
| TGAGCAAAATTCCCTCAAAA+AGG | 0.378619 | 1_1:+74139146 | None:intergenic |
| TCCAAGTGGTCCTTCTGCCT+TGG | 0.383226 | 1_1:-74139844 | Msa0043120:CDS |
| CTTTCTTTGTGCTCAGCACC+AGG | 0.384320 | 1_1:+74139106 | None:intergenic |
| GAGCCTGAAATTCTTCTTGA+TGG | 0.387798 | 1_1:-74139250 | Msa0043120:CDS |
| TAGCAATCATGATATGTAAC+TGG | 0.393007 | 1_1:+74137965 | None:intergenic |
| CGAGAGAAAGAGATAGAGAA+AGG | 0.416172 | 1_1:+74141286 | None:intergenic |
| TCTTAAGCACGGTGTTCTGC+AGG | 0.420043 | 1_1:+74138410 | None:intergenic |
| CATCAGTTGTCGATTGGTAA+AGG | 0.422192 | 1_1:+74140516 | None:intergenic |
| ATCAGTTGTCGATTGGTAAA+GGG | 0.422744 | 1_1:+74140517 | None:intergenic |
| GTGCCAAGGTTTGGATGGAT+TGG | 0.426272 | 1_1:-74140029 | Msa0043120:CDS |
| TCTCGTTCACTCCGTCTAAA+CGG | 0.427424 | 1_1:+74141329 | None:intergenic |
| TGAATCTTGGTGCCAAGGTT+TGG | 0.428814 | 1_1:-74140038 | Msa0043120:CDS |
| TATTAAGTCTCCCAACATAA+GGG | 0.432202 | 1_1:+74138002 | None:intergenic |
| TGCAACCGCTGGGAAGCGTT+TGG | 0.446908 | 1_1:-74140651 | Msa0043120:CDS |
| CTGAGCCAAGGAGTTAGCTT+TGG | 0.448199 | 1_1:+74138330 | None:intergenic |
| AGCCTGAAATTCTTCTTGAT+GGG | 0.449367 | 1_1:-74139249 | Msa0043120:CDS |
| GTCAGGTGGACAATCAGAAA+TGG | 0.452090 | 1_1:-74138506 | Msa0043120:CDS |
| ACCTTGTCAACTTTGATGCC+AGG | 0.456026 | 1_1:+74140452 | None:intergenic |
| TGGCTGTTAAGGAAGCGGCC+TGG | 0.457338 | 1_1:-74139824 | Msa0043120:CDS |
| ACCATGATTCCGGGGACTGC+AGG | 0.458254 | 1_1:+74139025 | None:intergenic |
| AAAGACACGTGCCATGGGTT+GGG | 0.469437 | 1_1:+74138448 | None:intergenic |
| GTATTAAGTCTCCCAACATA+AGG | 0.470893 | 1_1:+74138001 | None:intergenic |
| GCGTTTGGCATCAATTGGAT+TGG | 0.476960 | 1_1:-74140636 | Msa0043120:CDS |
| CCAGTGTCCTTTCAATTGGG+TGG | 0.480272 | 1_1:+74139224 | None:intergenic |
| GACTTCGGACCATACCTTCT+CGG | 0.480537 | 1_1:+74139195 | None:intergenic |
| CTGGTGCTGAGCACAAAGAA+AGG | 0.481067 | 1_1:-74139105 | Msa0043120:CDS |
| AAGGATTGTTAGCGATCCAT+TGG | 0.481219 | 1_1:+74141126 | None:intergenic |
| GCAAAAGTTGCCTGTAAGCC+TGG | 0.485518 | 1_1:+74140594 | None:intergenic |
| TTGCTCACCACACCCGGTCT+AGG | 0.485709 | 1_1:-74140575 | Msa0043120:CDS |
| GATGAATCAAATGCAACCGC+TGG | 0.489723 | 1_1:-74140662 | Msa0043120:CDS |
| TCCTGCAGTCCCCGGAATCA+TGG | 0.494010 | 1_1:-74139026 | Msa0043120:intron |
| CAGGGTCAAACAATGAATCT+TGG | 0.494941 | 1_1:-74140051 | Msa0043120:CDS |
| TGGAAGTTGCCGAGAAGGTA+TGG | 0.496479 | 1_1:-74139204 | Msa0043120:CDS |
| TCTGTTGCATCTCGTGGTCG+TGG | 0.498134 | 1_1:-74140698 | Msa0043120:CDS |
| TCATTGTTTGACCCTGGTAG+AGG | 0.501439 | 1_1:+74140058 | None:intergenic |
| CTTTACCAATCGACAACTGA+TGG | 0.504053 | 1_1:-74140515 | Msa0043120:CDS |
| AACAATGAATCTTGGTGCCA+AGG | 0.506764 | 1_1:-74140043 | Msa0043120:CDS |
| AGAAGTTGAGGTGTCTCTTG+TGG | 0.510767 | 1_1:-74138234 | Msa0043120:three_prime_UTR |
| AGAGATGTATTCACCTAGAC+CGG | 0.511873 | 1_1:+74140562 | None:intergenic |
| TCTTCCCATCAGTTGTCGAT+TGG | 0.513936 | 1_1:+74140510 | None:intergenic |
| TATGTTGGGAGACTTAATAC+TGG | 0.515330 | 1_1:-74137998 | Msa0043120:three_prime_UTR |
| GAGACACCTCAACTTCTAGT+AGG | 0.519596 | 1_1:+74138240 | None:intergenic |
| GGTAACGGTACCATGATTCC+GGG | 0.519907 | 1_1:+74139016 | None:intergenic |
| GCTAACTCCTTGGCTCAGCT+TGG | 0.521549 | 1_1:-74138325 | Msa0043120:CDS |
| ACGATATGCTGCTATCTCTC+AGG | 0.522411 | 1_1:-74139793 | Msa0043120:intron |
| CCGTGCCAAAGCTAACTCCT+TGG | 0.523174 | 1_1:-74138335 | Msa0043120:CDS |
| TCTTGGTGCCAAGGTTTGGA+TGG | 0.523779 | 1_1:-74140034 | Msa0043120:CDS |
| GAGAGAAAGAGATAGAGAAA+GGG | 0.524589 | 1_1:+74141287 | None:intergenic |
| AACTGATGGGAAGAAGTTTG+TGG | 0.525618 | 1_1:-74140501 | Msa0043120:CDS |
| TGCCTTGGCTGTTAAGGAAG+CGG | 0.526397 | 1_1:-74139829 | Msa0043120:CDS |
| GGTTAGTGTATATTTGGCAA+TGG | 0.529594 | 1_1:+74139069 | None:intergenic |
| CAATACTGAGGTTAATCGCC+AGG | 0.530082 | 1_1:-74140612 | Msa0043120:CDS |
| ATTAAGTCTCCCAACATAAG+GGG | 0.532723 | 1_1:+74138003 | None:intergenic |
| AGCATATCGTGCAAGTCCCC+AGG | 0.533205 | 1_1:+74139806 | None:intergenic |
| CGAAAATGAAGAAGCCAAGA+AGG | 0.534786 | 1_1:-74138284 | Msa0043120:CDS |
| GAGCTGCTTCAACATTCTCA+GGG | 0.535757 | 1_1:+74138374 | None:intergenic |
| AGGATTGTTAGCGATCCATT+GGG | 0.536120 | 1_1:+74141127 | None:intergenic |
| TGGTGCTGAGCACAAAGAAA+GGG | 0.536459 | 1_1:-74139104 | Msa0043120:CDS |
| GCACCAGGTGTAACCATGCT+AGG | 0.538660 | 1_1:+74139121 | None:intergenic |
| GAAAGACACGTGCCATGGGT+TGG | 0.541533 | 1_1:+74138447 | None:intergenic |
| GGTCTAGGTGAATACATCTC+TGG | 0.541967 | 1_1:-74140560 | Msa0043120:CDS |
| GCCTGAAATTCTTCTTGATG+GGG | 0.544178 | 1_1:-74139248 | Msa0043120:CDS |
| GCCAAGGCAGAAGGACCACT+TGG | 0.544206 | 1_1:+74139843 | None:intergenic |
| AGAGTTCCTCCTGCAGTCCC+CGG | 0.546179 | 1_1:-74139034 | Msa0043120:CDS |
| GACACTGGAAGTTGCCGAGA+AGG | 0.547027 | 1_1:-74139209 | Msa0043120:CDS |
| GGCCGCTTCCTTAACAGCCA+AGG | 0.548119 | 1_1:+74139827 | None:intergenic |
| CGTGAGGAGAACATTGTACC+TGG | 0.549941 | 1_1:-74140470 | Msa0043120:CDS |
| TGTACTACCAACCGTTTAGA+CGG | 0.552475 | 1_1:-74141340 | Msa0043120:five_prime_UTR |
| ATGGGGACCACCCAATTGAA+AGG | 0.554643 | 1_1:-74139231 | Msa0043120:CDS |
| AAGAGAGACGTTGCGAGTGG+AGG | 0.555621 | 1_1:+74141079 | None:intergenic |
| ACAAAACAAACACACACACG+AGG | 0.556224 | 1_1:-74141231 | Msa0043120:five_prime_UTR |
| CCTTTCTCTTCTCGTCGTGG+TGG | 0.562624 | 1_1:-74141107 | Msa0043120:CDS |
| CCACCACGACGAGAAGAGAA+AGG | 0.565487 | 1_1:+74141107 | None:intergenic |
| AGGGTTTGGTTCCTCTACCA+GGG | 0.568089 | 1_1:-74140069 | Msa0043120:CDS |
| GTATTCACCTAGACCGGGTG+TGG | 0.569507 | 1_1:+74140568 | None:intergenic |
| GTATCTTCCAAGCTGAGCCA+AGG | 0.572003 | 1_1:+74138318 | None:intergenic |
| AGCGGTTTGAACAAGTTCAT+CGG | 0.573532 | 1_1:+74141034 | None:intergenic |
| TCCTTAACAGCCAAGGCAGA+AGG | 0.573737 | 1_1:+74139834 | None:intergenic |
| GAGTAAGAAGAAGCGCGGAT+CGG | 0.575235 | 1_1:+74141056 | None:intergenic |
| TCAACTCTCTCTCTTCCCAA+TGG | 0.579450 | 1_1:-74141142 | Msa0043120:CDS |
| TGTGTTCCATTGCAGGACAA+CGG | 0.583080 | 1_1:-74139289 | Msa0043120:intron |
| TATGAGAAAGACACGTGCCA+TGG | 0.584679 | 1_1:+74138442 | None:intergenic |
| AGGAACTCTTCTGTTAAGCA+TGG | 0.585388 | 1_1:+74139048 | None:intergenic |
| ATGAGAAAGACACGTGCCAT+GGG | 0.586561 | 1_1:+74138443 | None:intergenic |
| TAGAAATCTGTTGCATCTCG+TGG | 0.588123 | 1_1:-74140704 | Msa0043120:CDS |
| CAGGCTCAACTATTGGAACA+AGG | 0.589394 | 1_1:+74139266 | None:intergenic |
| CAAAACAAACACACACACGA+GGG | 0.590959 | 1_1:-74141230 | Msa0043120:five_prime_UTR |
| CAAGATTCATTGTTTGACCC+TGG | 0.591933 | 1_1:+74140052 | None:intergenic |
| AAGCCAATCCATCCAAACCT+TGG | 0.594762 | 1_1:+74140026 | None:intergenic |
| ATGAATCAAATGCAACCGCT+GGG | 0.595807 | 1_1:-74140661 | Msa0043120:CDS |
| CTTAAGCACGGTGTTCTGCA+GGG | 0.596190 | 1_1:+74138411 | None:intergenic |
| ACTATACCTACTAGAAGTTG+AGG | 0.596744 | 1_1:-74138246 | Msa0043120:exon |
| GCTGTTAAGGAAGCGGCCTG+GGG | 0.602168 | 1_1:-74139822 | Msa0043120:CDS |
| GTTCACTCCGTCTAAACGGT+TGG | 0.607526 | 1_1:+74141333 | None:intergenic |
| AAGCCTAGCATGGTTACACC+TGG | 0.607681 | 1_1:-74139124 | Msa0043120:CDS |
| CCAAGGAGTTAGCTTTGGCA+CGG | 0.608922 | 1_1:+74138335 | None:intergenic |
| ACCGTGCTTAAGACATGGCA+AGG | 0.609667 | 1_1:-74138400 | Msa0043120:CDS |
| ACCTTGCCATGTCTTAAGCA+CGG | 0.614625 | 1_1:+74138399 | None:intergenic |
| CGGAAGAGAGACGTTGCGAG+TGG | 0.615100 | 1_1:+74141076 | None:intergenic |
| TTTACCAATCGACAACTGAT+GGG | 0.617461 | 1_1:-74140514 | Msa0043120:CDS |
| AATCCTTTCTCTTCTCGTCG+TGG | 0.618650 | 1_1:-74141110 | Msa0043120:CDS |
| CCACCCAATTGAAAGGACAC+TGG | 0.623497 | 1_1:-74139224 | Msa0043120:CDS |
| CAGGTACAATGTTCTCCTCA+CGG | 0.624895 | 1_1:+74140471 | None:intergenic |
| CTTGGAAGATACTCTGCCGA+GGG | 0.626594 | 1_1:-74138307 | Msa0043120:CDS |
| CAAGAAGGAAATGTTCGTCA+AGG | 0.630500 | 1_1:-74138269 | Msa0043120:CDS |
| ATGATTCCGGGGACTGCAGG+AGG | 0.636274 | 1_1:+74139028 | None:intergenic |
| GCTTGGAAGATACTCTGCCG+AGG | 0.639009 | 1_1:-74138308 | Msa0043120:CDS |
| TGAACCAAAGTCCCAACCCA+TGG | 0.639076 | 1_1:-74138459 | Msa0043120:CDS |
| GGCCAAATAAAAGAAGACTT+CGG | 0.642870 | 1_1:+74139180 | None:intergenic |
| ACCTGGCATCAAAGTTGACA+AGG | 0.646079 | 1_1:-74140453 | Msa0043120:intron |
| TCTGCTGAATACTACAAGCA+AGG | 0.650843 | 1_1:-74139998 | Msa0043120:CDS |
| ACCGTTGTCAGCATTCCAAG+TGG | 0.664978 | 1_1:-74139858 | Msa0043120:CDS |
| AATTGGATTGGACAATACTG+AGG | 0.667179 | 1_1:-74140624 | Msa0043120:CDS |
| TTAAGTCTCCCAACATAAGG+GGG | 0.668803 | 1_1:+74138004 | None:intergenic |
| ACCACTTGGAATGCTGACAA+CGG | 0.673812 | 1_1:+74139857 | None:intergenic |
| GAGATGTATTCACCTAGACC+GGG | 0.674915 | 1_1:+74140563 | None:intergenic |
| AAGGTGCTCGATTTGCCAAG+TGG | 0.677907 | 1_1:-74139979 | Msa0043120:intron |
| AGAACACCGTGCTTAAGACA+TGG | 0.678756 | 1_1:-74138405 | Msa0043120:CDS |
| GTAACGGTACCATGATTCCG+GGG | 0.691074 | 1_1:+74139017 | None:intergenic |
| GTTTGTGGATTGTCTCCGTG+AGG | 0.692026 | 1_1:-74140486 | Msa0043120:CDS |
| CATCGGAGTAAGAAGAAGCG+CGG | 0.699829 | 1_1:+74141051 | None:intergenic |
| TGATGCCAAACGCTTCCCAG+CGG | 0.710626 | 1_1:+74140646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAAGTAATGAAAAA+GGG | + | chr1_1:74138321-74138340 | None:intergenic | 10.0% |
| !! | GAATTTAAAAGTAATGAAAA+AGG | + | chr1_1:74138322-74138341 | None:intergenic | 15.0% |
| !!! | TTCTTATATTGATCTTTTTT+TGG | - | chr1_1:74139974-74139993 | Msa0043120:intron | 15.0% |
| !!! | AAAAAAAAAAAGACTTTTCT+TGG | - | chr1_1:74141211-74141230 | Msa0043120:five_prime_UTR | 15.0% |
| !!! | ATGATTGCTATATATTTTTT+TGG | - | chr1_1:74141342-74141361 | Msa0043120:five_prime_UTR | 15.0% |
| !!! | TGATTGCTATATATTTTTTT+GGG | - | chr1_1:74141343-74141362 | Msa0043120:five_prime_UTR | 15.0% |
| !! | AATAAATGTGATCGAAATAA+AGG | + | chr1_1:74138293-74138312 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAATCTTTTCTGT+TGG | - | chr1_1:74138349-74138368 | Msa0043120:CDS | 20.0% |
| !!! | AAGTTTTAATCTTTTCTGTT+GGG | - | chr1_1:74138350-74138369 | Msa0043120:CDS | 20.0% |
| !! | TTCCAATTAGAATGATTTAT+CGG | + | chr1_1:74138467-74138486 | None:intergenic | 20.0% |
| !!! | TTTTATCCTTTTTTCTTTGT+AGG | - | chr1_1:74139205-74139224 | Msa0043120:CDS | 20.0% |
| !!! | TTTATCCTTTTTTCTTTGTA+GGG | - | chr1_1:74139206-74139225 | Msa0043120:CDS | 20.0% |
| !! | ACATTGAAATTGAATTGAAA+TGG | - | chr1_1:74139386-74139405 | Msa0043120:intron | 20.0% |
| !!! | ATATGTAATGAACCTTTTAT+TGG | - | chr1_1:74139749-74139768 | Msa0043120:intron | 20.0% |
| !! | TTATGTAAATCAGAAACTAA+AGG | + | chr1_1:74140312-74140331 | None:intergenic | 20.0% |
| ! | AGAATGATTTATCGGAAAAT+TGG | + | chr1_1:74138459-74138478 | None:intergenic | 25.0% |
| ! | TTCCGATAAATCATTCTAAT+TGG | - | chr1_1:74138462-74138481 | Msa0043120:CDS | 25.0% |
| ! | TTGAAATTGAATTGAAATGG+TGG | - | chr1_1:74139389-74139408 | Msa0043120:intron | 25.0% |
| ! | TTTCAACAAACAAACATTCA+TGG | + | chr1_1:74139539-74139558 | None:intergenic | 25.0% |
| !! | TGTAAGTTGAAAATGTGTAT+AGG | - | chr1_1:74139689-74139708 | Msa0043120:intron | 25.0% |
| ! | TATAGGTTGTGAAATTTGAT+TGG | - | chr1_1:74139706-74139725 | Msa0043120:intron | 25.0% |
| ! | TTTAGTATTTATTGCAAGCA+AGG | - | chr1_1:74139809-74139828 | Msa0043120:CDS | 25.0% |
| ! | CATCATTAGATTAATCTGAT+TGG | - | chr1_1:74139868-74139887 | Msa0043120:intron | 25.0% |
| ! | AAAGATCAATATAAGAACAC+TGG | + | chr1_1:74139971-74139990 | None:intergenic | 25.0% |
| ! | ACGTATAGTTAACTTTGATA+TGG | + | chr1_1:74140387-74140406 | None:intergenic | 25.0% |
| ! | TGTCACATATGTATATATCA+AGG | + | chr1_1:74140514-74140533 | None:intergenic | 25.0% |
| ! | TGTTTAAAGATTCTGAATTC+AGG | + | chr1_1:74140580-74140599 | None:intergenic | 25.0% |
| !! | CTCAATATCAGTGAATTTTA+AGG | - | chr1_1:74141120-74141139 | Msa0043120:CDS | 25.0% |
| !!! | GAAAGGGTTTTGTTTTGTTT+TGG | + | chr1_1:74137994-74138013 | None:intergenic | 30.0% |
| !!! | TTGTTTTGTTTGACAAACGT+TGG | + | chr1_1:74138052-74138071 | None:intergenic | 30.0% |
| ATTGCGTTCGTTAGTAATAT+AGG | - | chr1_1:74138871-74138890 | Msa0043120:intron | 30.0% | |
| TCGTTAGTAATATAGGATCA+AGG | - | chr1_1:74138878-74138897 | Msa0043120:intron | 30.0% | |
| !! | AGTCATAACTTGTTGTGATT+TGG | - | chr1_1:74139081-74139100 | Msa0043120:CDS | 30.0% |
| !!! | GGTTTGCTTTTGAAATATAC+AGG | - | chr1_1:74139410-74139429 | Msa0043120:intron | 30.0% |
| AATAACTGGTGTACTTTCAT+GGG | - | chr1_1:74139574-74139593 | Msa0043120:intron | 30.0% | |
| ! | TACTTTCATGGGTTATTCTT+TGG | - | chr1_1:74139585-74139604 | Msa0043120:intron | 30.0% |
| CAATGTGCTTAAATATCTAC+TGG | + | chr1_1:74139671-74139690 | None:intergenic | 30.0% | |
| ! | GTAATGAACCTTTTATTGGT+TGG | - | chr1_1:74139753-74139772 | Msa0043120:intron | 30.0% |
| TAATGATGTTACAAAGCAAG+AGG | + | chr1_1:74139856-74139875 | None:intergenic | 30.0% | |
| AAGCATGGTTAGTGTATATT+TGG | + | chr1_1:74140234-74140253 | None:intergenic | 30.0% | |
| TAAATCAGAAACTAAAGGTG+AGG | + | chr1_1:74140307-74140326 | None:intergenic | 30.0% | |
| CACAACAGAATATATGCAAT+TGG | + | chr1_1:74140612-74140631 | None:intergenic | 30.0% | |
| TTGGGATACCTAAAAATCAA+AGG | - | chr1_1:74141247-74141266 | Msa0043120:five_prime_UTR | 30.0% | |
| TGGGATACCTAAAAATCAAA+GGG | - | chr1_1:74141248-74141267 | Msa0043120:five_prime_UTR | 30.0% | |
| !! | GTGAATTCCCTTTGATTTTT+AGG | + | chr1_1:74141258-74141277 | None:intergenic | 30.0% |
| TATTAAGTCTCCCAACATAA+GGG | + | chr1_1:74141295-74141314 | None:intergenic | 30.0% | |
| TAGCAATCATGATATGTAAC+TGG | + | chr1_1:74141332-74141351 | None:intergenic | 30.0% | |
| GAGAGAAAGAGATAGAGAAA+GGG | + | chr1_1:74138010-74138029 | None:intergenic | 35.0% | |
| ! | AATTTTCATCACTTCACCCA+TGG | - | chr1_1:74138117-74138136 | Msa0043120:three_prime_UTR | 35.0% |
| CGAAATAAAGGTAGTTACAG+CGG | + | chr1_1:74138281-74138300 | None:intergenic | 35.0% | |
| ! | AATTGGATTGGACAATACTG+AGG | - | chr1_1:74138670-74138689 | Msa0043120:intron | 35.0% |
| ! | ATCAGTTGTCGATTGGTAAA+GGG | + | chr1_1:74138780-74138799 | None:intergenic | 35.0% |
| TTTACCAATCGACAACTGAT+GGG | - | chr1_1:74138780-74138799 | Msa0043120:intron | 35.0% | |
| TTTCCATAAGCTCTTCAAGA+TGG | + | chr1_1:74139044-74139063 | None:intergenic | 35.0% | |
| CCAAACCCTACAAAGAAAAA+AGG | + | chr1_1:74139214-74139233 | None:intergenic | 35.0% | |
| !!! | CCTTTTTTCTTTGTAGGGTT+TGG | - | chr1_1:74139211-74139230 | Msa0043120:CDS | 35.0% |
| AACAAACATTCATGGAATGC+AGG | + | chr1_1:74139531-74139550 | None:intergenic | 35.0% | |
| ! | GTTTGTTGAAATAAGCTCGT+CGG | - | chr1_1:74139548-74139567 | Msa0043120:intron | 35.0% |
| GAATAACTGGTGTACTTTCA+TGG | - | chr1_1:74139573-74139592 | Msa0043120:intron | 35.0% | |
| !! | CATTTGCTGTGTGTTTAGTT+TGG | - | chr1_1:74139632-74139651 | Msa0043120:intron | 35.0% |
| GTCAAGAACCAACCAATAAA+AGG | + | chr1_1:74139764-74139783 | None:intergenic | 35.0% | |
| AGAATTTCAGGCTCAACTAT+TGG | + | chr1_1:74140038-74140057 | None:intergenic | 35.0% | |
| AGCCTGAAATTCTTCTTGAT+GGG | - | chr1_1:74140045-74140064 | Msa0043120:CDS | 35.0% | |
| ! | GTCCGAAGTCTTCTTTTATT+TGG | - | chr1_1:74140112-74140131 | Msa0043120:intron | 35.0% |
| GGCCAAATAAAAGAAGACTT+CGG | + | chr1_1:74140117-74140136 | None:intergenic | 35.0% | |
| CTCAAAAAGGACATTGTTCT+GGG | + | chr1_1:74140138-74140157 | None:intergenic | 35.0% | |
| ! | CAGAACAATGTCCTTTTTGA+GGG | - | chr1_1:74140137-74140156 | Msa0043120:intron | 35.0% |
| TGAGCAAAATTCCCTCAAAA+AGG | + | chr1_1:74140151-74140170 | None:intergenic | 35.0% | |
| GTATATTTGGCAATGGTTTC+TGG | + | chr1_1:74140221-74140240 | None:intergenic | 35.0% | |
| GGTTAGTGTATATTTGGCAA+TGG | + | chr1_1:74140228-74140247 | None:intergenic | 35.0% | |
| GTTAACTATACGTGTGACTT+CGG | - | chr1_1:74140394-74140413 | Msa0043120:intron | 35.0% | |
| TGTGACTTCGGAAATAACTA+CGG | - | chr1_1:74140406-74140425 | Msa0043120:intron | 35.0% | |
| GTTCTTGATCGTAGGTAATT+TGG | - | chr1_1:74140631-74140650 | Msa0043120:CDS | 35.0% | |
| TTGATCGTAGGTAATTTGGA+TGG | - | chr1_1:74140635-74140654 | Msa0043120:CDS | 35.0% | |
| ! | TCGTATTCTCAGTTTTTGTC+AGG | - | chr1_1:74140771-74140790 | Msa0043120:intron | 35.0% |
| ! | TATTCTCAGTTTTTGTCAGG+TGG | - | chr1_1:74140774-74140793 | Msa0043120:intron | 35.0% |
| ACTATACCTACTAGAAGTTG+AGG | - | chr1_1:74141048-74141067 | Msa0043120:CDS | 35.0% | |
| !! | GACTTTTCTTGGTGTAATAG+AGG | - | chr1_1:74141222-74141241 | Msa0043120:five_prime_UTR | 35.0% |
| !! | TCTTGGTGTAATAGAGGTTT+TGG | - | chr1_1:74141228-74141247 | Msa0043120:five_prime_UTR | 35.0% |
| !! | CTTGGTGTAATAGAGGTTTT+GGG | - | chr1_1:74141229-74141248 | Msa0043120:five_prime_UTR | 35.0% |
| ATTAAGTCTCCCAACATAAG+GGG | + | chr1_1:74141294-74141313 | None:intergenic | 35.0% | |
| GTATTAAGTCTCCCAACATA+AGG | + | chr1_1:74141296-74141315 | None:intergenic | 35.0% | |
| TATGTTGGGAGACTTAATAC+TGG | - | chr1_1:74141296-74141315 | Msa0043120:five_prime_UTR | 35.0% | |
| TGTACTACCAACCGTTTAGA+CGG | - | chr1_1:74137954-74137973 | Msa0043120:three_prime_UTR | 40.0% | |
| CGAGAGAAAGAGATAGAGAA+AGG | + | chr1_1:74138011-74138030 | None:intergenic | 40.0% | |
| ACAAAACAAACACACACACG+AGG | - | chr1_1:74138063-74138082 | Msa0043120:three_prime_UTR | 40.0% | |
| CAAAACAAACACACACACGA+GGG | - | chr1_1:74138064-74138083 | Msa0043120:three_prime_UTR | 40.0% | |
| ! | TTGAGTTTTGCAGAAGCCAT+GGG | + | chr1_1:74138136-74138155 | None:intergenic | 40.0% |
| AGGATTGTTAGCGATCCATT+GGG | + | chr1_1:74138170-74138189 | None:intergenic | 40.0% | |
| AAGGATTGTTAGCGATCCAT+TGG | + | chr1_1:74138171-74138190 | None:intergenic | 40.0% | |
| AGCGGTTTGAACAAGTTCAT+CGG | + | chr1_1:74138263-74138282 | None:intergenic | 40.0% | |
| TAGAAATCTGTTGCATCTCG+TGG | - | chr1_1:74138590-74138609 | Msa0043120:intron | 40.0% | |
| ATGAATCAAATGCAACCGCT+GGG | - | chr1_1:74138633-74138652 | Msa0043120:intron | 40.0% | |
| AGAGATGTATTCACCTAGAC+CGG | + | chr1_1:74138735-74138754 | None:intergenic | 40.0% | |
| ! | CATCAGTTGTCGATTGGTAA+AGG | + | chr1_1:74138781-74138800 | None:intergenic | 40.0% |
| CTTTACCAATCGACAACTGA+TGG | - | chr1_1:74138779-74138798 | Msa0043120:intron | 40.0% | |
| AACTGATGGGAAGAAGTTTG+TGG | - | chr1_1:74138793-74138812 | Msa0043120:intron | 40.0% | |
| TATAGGATCAAGGCTCTGTT+TGG | - | chr1_1:74138888-74138907 | Msa0043120:intron | 40.0% | |
| AAGCCATCTTGAAGAGCTTA+TGG | - | chr1_1:74139038-74139057 | Msa0043120:CDS | 40.0% | |
| TCTAACAAGCCAATCCAAAC+AGG | - | chr1_1:74139119-74139138 | Msa0043120:CDS | 40.0% | |
| ! | GTTGGTTGATCATAACTTGC+TGG | - | chr1_1:74139173-74139192 | Msa0043120:CDS | 40.0% |
| CAAGATTCATTGTTTGACCC+TGG | + | chr1_1:74139245-74139264 | None:intergenic | 40.0% | |
| CAGGGTCAAACAATGAATCT+TGG | - | chr1_1:74139243-74139262 | Msa0043120:CDS | 40.0% | |
| !! | AACAATGAATCTTGGTGCCA+AGG | - | chr1_1:74139251-74139270 | Msa0043120:CDS | 40.0% |
| TCTGCTGAATACTACAAGCA+AGG | - | chr1_1:74139296-74139315 | Msa0043120:intron | 40.0% | |
| ACCAAGAATAGCTTACCACT+TGG | + | chr1_1:74139333-74139352 | None:intergenic | 40.0% | |
| GAAAGAATACCCCTGTAAGA+CGG | + | chr1_1:74139613-74139632 | None:intergenic | 40.0% | |
| GAGCCTGAAATTCTTCTTGA+TGG | - | chr1_1:74140044-74140063 | Msa0043120:CDS | 40.0% | |
| GCCTGAAATTCTTCTTGATG+GGG | - | chr1_1:74140046-74140065 | Msa0043120:CDS | 40.0% | |
| TCCCCATCAAGAAGAATTTC+AGG | + | chr1_1:74140050-74140069 | None:intergenic | 40.0% | |
| CTTCCAGTGTCCTTTCAATT+GGG | + | chr1_1:74140076-74140095 | None:intergenic | 40.0% | |
| ACTTCCAGTGTCCTTTCAAT+TGG | + | chr1_1:74140077-74140096 | None:intergenic | 40.0% | |
| CCTCAAAAAGGACATTGTTC+TGG | + | chr1_1:74140139-74140158 | None:intergenic | 40.0% | |
| ! | CCAGAACAATGTCCTTTTTG+AGG | - | chr1_1:74140136-74140155 | Msa0043120:intron | 40.0% |
| ! | AATTTTGCTCAAGCCTAGCA+TGG | - | chr1_1:74140160-74140179 | Msa0043120:intron | 40.0% |
| AGGAACTCTTCTGTTAAGCA+TGG | + | chr1_1:74140249-74140268 | None:intergenic | 40.0% | |
| TCTGTTGTGTTCTTGATCGT+AGG | - | chr1_1:74140623-74140642 | Msa0043120:CDS | 40.0% | |
| ! | AGCAGCTCAAAAGTCTCTTT+TGG | - | chr1_1:74140935-74140954 | Msa0043120:intron | 40.0% |
| CGAAAATGAAGAAGCCAAGA+AGG | - | chr1_1:74141010-74141029 | Msa0043120:intron | 40.0% | |
| CTTGACGAACATTTCCTTCT+TGG | + | chr1_1:74141027-74141046 | None:intergenic | 40.0% | |
| CAAGAAGGAAATGTTCGTCA+AGG | - | chr1_1:74141025-74141044 | Msa0043120:intron | 40.0% | |
| TTAAGTCTCCCAACATAAGG+GGG | + | chr1_1:74141293-74141312 | None:intergenic | 40.0% | |
| TCTCGTTCACTCCGTCTAAA+CGG | + | chr1_1:74137968-74137987 | None:intergenic | 45.0% | |
| ! | GTTGAGTTTTGCAGAAGCCA+TGG | + | chr1_1:74138137-74138156 | None:intergenic | 45.0% |
| TCAACTCTCTCTCTTCCCAA+TGG | - | chr1_1:74138152-74138171 | Msa0043120:three_prime_UTR | 45.0% | |
| AATCCTTTCTCTTCTCGTCG+TGG | - | chr1_1:74138184-74138203 | Msa0043120:three_prime_UTR | 45.0% | |
| GATGAATCAAATGCAACCGC+TGG | - | chr1_1:74138632-74138651 | Msa0043120:intron | 45.0% | |
| GCGTTTGGCATCAATTGGAT+TGG | - | chr1_1:74138658-74138677 | Msa0043120:intron | 45.0% | |
| CAATACTGAGGTTAATCGCC+AGG | - | chr1_1:74138682-74138701 | Msa0043120:intron | 45.0% | |
| GAGATGTATTCACCTAGACC+GGG | + | chr1_1:74138734-74138753 | None:intergenic | 45.0% | |
| GGTCTAGGTGAATACATCTC+TGG | - | chr1_1:74138734-74138753 | Msa0043120:intron | 45.0% | |
| TCTTCCCATCAGTTGTCGAT+TGG | + | chr1_1:74138787-74138806 | None:intergenic | 45.0% | |
| CAGGTACAATGTTCTCCTCA+CGG | + | chr1_1:74138826-74138845 | None:intergenic | 45.0% | |
| ACCTGGCATCAAAGTTGACA+AGG | - | chr1_1:74138841-74138860 | Msa0043120:intron | 45.0% | |
| ACCTTGTCAACTTTGATGCC+AGG | + | chr1_1:74138845-74138864 | None:intergenic | 45.0% | |
| GTCTTAGAGCCTGTTTGGAT+TGG | + | chr1_1:74139131-74139150 | None:intergenic | 45.0% | |
| TCACAGTCTTAGAGCCTGTT+TGG | + | chr1_1:74139136-74139155 | None:intergenic | 45.0% | |
| !! | CAGGCTCTAAGACTGTGATT+TGG | - | chr1_1:74139138-74139157 | Msa0043120:CDS | 45.0% |
| !! | AGACTGTGATTTGGTCTCAG+TGG | - | chr1_1:74139147-74139166 | Msa0043120:CDS | 45.0% |
| !! | TGTGATTTGGTCTCAGTGGT+TGG | - | chr1_1:74139151-74139170 | Msa0043120:CDS | 45.0% |
| ATTTGGTCTCAGTGGTTGGT+TGG | - | chr1_1:74139155-74139174 | Msa0043120:CDS | 45.0% | |
| TCATTGTTTGACCCTGGTAG+AGG | + | chr1_1:74139239-74139258 | None:intergenic | 45.0% | |
| !! | TGAATCTTGGTGCCAAGGTT+TGG | - | chr1_1:74139256-74139275 | Msa0043120:CDS | 45.0% |
| AAGCCAATCCATCCAAACCT+TGG | + | chr1_1:74139271-74139290 | None:intergenic | 45.0% | |
| GCCAAGTGGTAAGCTATTCT+TGG | - | chr1_1:74139329-74139348 | Msa0043120:intron | 45.0% | |
| ACCACTTGGAATGCTGACAA+CGG | + | chr1_1:74139440-74139459 | None:intergenic | 45.0% | |
| ACGATATGCTGCTATCTCTC+AGG | - | chr1_1:74139501-74139520 | Msa0043120:intron | 45.0% | |
| AAGCTCGTCGGTAGAATAAC+TGG | - | chr1_1:74139560-74139579 | Msa0043120:intron | 45.0% | |
| !! | ATTCTTTGGTGCCGTCTTAC+AGG | - | chr1_1:74139599-74139618 | Msa0043120:intron | 45.0% |
| !! | TTCTTTGGTGCCGTCTTACA+GGG | - | chr1_1:74139600-74139619 | Msa0043120:intron | 45.0% |
| TGCTCTTTGTGTTCCATTGC+AGG | - | chr1_1:74139998-74140017 | Msa0043120:CDS | 45.0% | |
| TGTGTTCCATTGCAGGACAA+CGG | - | chr1_1:74140005-74140024 | Msa0043120:CDS | 45.0% | |
| CAGGCTCAACTATTGGAACA+AGG | + | chr1_1:74140031-74140050 | None:intergenic | 45.0% | |
| ! | TGGTGCTGAGCACAAAGAAA+GGG | - | chr1_1:74140190-74140209 | Msa0043120:intron | 45.0% |
| CAGAAACTAAAGGTGAGGTG+CGG | + | chr1_1:74140302-74140321 | None:intergenic | 45.0% | |
| GTCAGGTGGACAATCAGAAA+TGG | - | chr1_1:74140788-74140807 | Msa0043120:intron | 45.0% | |
| ATGAGAAAGACACGTGCCAT+GGG | + | chr1_1:74140854-74140873 | None:intergenic | 45.0% | |
| TATGAGAAAGACACGTGCCA+TGG | + | chr1_1:74140855-74140874 | None:intergenic | 45.0% | |
| AGAACACCGTGCTTAAGACA+TGG | - | chr1_1:74140889-74140908 | Msa0043120:intron | 45.0% | |
| ACCTTGCCATGTCTTAAGCA+CGG | + | chr1_1:74140898-74140917 | None:intergenic | 45.0% | |
| GAGCTGCTTCAACATTCTCA+GGG | + | chr1_1:74140923-74140942 | None:intergenic | 45.0% | |
| TGAGCTGCTTCAACATTCTC+AGG | + | chr1_1:74140924-74140943 | None:intergenic | 45.0% | |
| GAGACACCTCAACTTCTAGT+AGG | + | chr1_1:74141057-74141076 | None:intergenic | 45.0% | |
| ! | AGAAGTTGAGGTGTCTCTTG+TGG | - | chr1_1:74141060-74141079 | Msa0043120:CDS | 45.0% |
| !!! | CTCTTGTGGCTTTTGGCTTT+TGG | - | chr1_1:74141074-74141093 | Msa0043120:CDS | 45.0% |
| !! | TTTTGCTGTCCCCCTTATGT+TGG | - | chr1_1:74141281-74141300 | Msa0043120:five_prime_UTR | 45.0% |
| ! | TTTGCTGTCCCCCTTATGTT+GGG | - | chr1_1:74141282-74141301 | Msa0043120:five_prime_UTR | 45.0% |
| GTTCACTCCGTCTAAACGGT+TGG | + | chr1_1:74137964-74137983 | None:intergenic | 50.0% | |
| ! | GAGTAAGAAGAAGCGCGGAT+CGG | + | chr1_1:74138241-74138260 | None:intergenic | 50.0% |
| CATCGGAGTAAGAAGAAGCG+CGG | + | chr1_1:74138246-74138265 | None:intergenic | 50.0% | |
| !! | GGGAAGCGTTTGGCATCAAT+TGG | - | chr1_1:74138653-74138672 | Msa0043120:intron | 50.0% |
| AGGTTAATCGCCAGGCTTAC+AGG | - | chr1_1:74138690-74138709 | Msa0043120:intron | 50.0% | |
| GCAAAAGTTGCCTGTAAGCC+TGG | + | chr1_1:74138703-74138722 | None:intergenic | 50.0% | |
| ! | CAACTTTTGCTCACCACACC+CGG | - | chr1_1:74138713-74138732 | Msa0043120:intron | 50.0% |
| ! | GTTTGTGGATTGTCTCCGTG+AGG | - | chr1_1:74138808-74138827 | Msa0043120:intron | 50.0% |
| CGTGAGGAGAACATTGTACC+TGG | - | chr1_1:74138824-74138843 | Msa0043120:intron | 50.0% | |
| ! | TAGGGTTTGGTTCCTCTACC+AGG | - | chr1_1:74139224-74139243 | Msa0043120:CDS | 50.0% |
| ! | AGGGTTTGGTTCCTCTACCA+GGG | - | chr1_1:74139225-74139244 | Msa0043120:CDS | 50.0% |
| !! | TCTTGGTGCCAAGGTTTGGA+TGG | - | chr1_1:74139260-74139279 | Msa0043120:CDS | 50.0% |
| GTGCCAAGGTTTGGATGGAT+TGG | - | chr1_1:74139265-74139284 | Msa0043120:CDS | 50.0% | |
| ! | AAGGTGCTCGATTTGCCAAG+TGG | - | chr1_1:74139315-74139334 | Msa0043120:intron | 50.0% |
| ACCGTTGTCAGCATTCCAAG+TGG | - | chr1_1:74139436-74139455 | Msa0043120:intron | 50.0% | |
| TCCTTCTGCCTTGGCTGTTA+AGG | - | chr1_1:74139459-74139478 | Msa0043120:intron | 50.0% | |
| TCCTTAACAGCCAAGGCAGA+AGG | + | chr1_1:74139463-74139482 | None:intergenic | 50.0% | |
| TGCCTTGGCTGTTAAGGAAG+CGG | - | chr1_1:74139465-74139484 | Msa0043120:intron | 50.0% | |
| !! | TCTTTGGTGCCGTCTTACAG+GGG | - | chr1_1:74139601-74139620 | Msa0043120:intron | 50.0% |
| ATGGGGACCACCCAATTGAA+AGG | - | chr1_1:74140063-74140082 | Msa0043120:CDS | 50.0% | |
| CCAGTGTCCTTTCAATTGGG+TGG | + | chr1_1:74140073-74140092 | None:intergenic | 50.0% | |
| CCACCCAATTGAAAGGACAC+TGG | - | chr1_1:74140070-74140089 | Msa0043120:CDS | 50.0% | |
| TGGAAGTTGCCGAGAAGGTA+TGG | - | chr1_1:74140090-74140109 | Msa0043120:intron | 50.0% | |
| GACTTCGGACCATACCTTCT+CGG | + | chr1_1:74140102-74140121 | None:intergenic | 50.0% | |
| AAGCCTAGCATGGTTACACC+TGG | - | chr1_1:74140170-74140189 | Msa0043120:intron | 50.0% | |
| CTTTCTTTGTGCTCAGCACC+AGG | + | chr1_1:74140191-74140210 | None:intergenic | 50.0% | |
| ! | CTGGTGCTGAGCACAAAGAA+AGG | - | chr1_1:74140189-74140208 | Msa0043120:intron | 50.0% |
| GTAACGGTACCATGATTCCG+GGG | + | chr1_1:74140280-74140299 | None:intergenic | 50.0% | |
| ! | GGTAACGGTACCATGATTCC+GGG | + | chr1_1:74140281-74140300 | None:intergenic | 50.0% |
| ! | CGGTAACGGTACCATGATTC+CGG | + | chr1_1:74140282-74140301 | None:intergenic | 50.0% |
| CTAAAGGTGAGGTGCGGTAA+CGG | + | chr1_1:74140296-74140315 | None:intergenic | 50.0% | |
| TGAACCAAAGTCCCAACCCA+TGG | - | chr1_1:74140835-74140854 | Msa0043120:intron | 50.0% | |
| AAAGACACGTGCCATGGGTT+GGG | + | chr1_1:74140849-74140868 | None:intergenic | 50.0% | |
| CTTAAGCACGGTGTTCTGCA+GGG | + | chr1_1:74140886-74140905 | None:intergenic | 50.0% | |
| TCTTAAGCACGGTGTTCTGC+AGG | + | chr1_1:74140887-74140906 | None:intergenic | 50.0% | |
| ACCGTGCTTAAGACATGGCA+AGG | - | chr1_1:74140894-74140913 | Msa0043120:intron | 50.0% | |
| !! | CCAAGGAGTTAGCTTTGGCA+CGG | + | chr1_1:74140962-74140981 | None:intergenic | 50.0% |
| ! | CTGAGCCAAGGAGTTAGCTT+TGG | + | chr1_1:74140967-74140986 | None:intergenic | 50.0% |
| GTATCTTCCAAGCTGAGCCA+AGG | + | chr1_1:74140979-74140998 | None:intergenic | 50.0% | |
| CTTGGAAGATACTCTGCCGA+GGG | - | chr1_1:74140987-74141006 | Msa0043120:intron | 50.0% | |
| ! | GGCTTCTTCATTTTCGCCCT+CGG | + | chr1_1:74141006-74141025 | None:intergenic | 50.0% |
| !! | GAGGTGTCTCTTGTGGCTTT+TGG | - | chr1_1:74141067-74141086 | Msa0043120:CDS | 50.0% |
| CCACCACGACGAGAAGAGAA+AGG | + | chr1_1:74138190-74138209 | None:intergenic | 55.0% | |
| CCTTTCTCTTCTCGTCGTGG+TGG | - | chr1_1:74138187-74138206 | Msa0043120:three_prime_UTR | 55.0% | |
| AAGAGAGACGTTGCGAGTGG+AGG | + | chr1_1:74138218-74138237 | None:intergenic | 55.0% | |
| TCTGTTGCATCTCGTGGTCG+TGG | - | chr1_1:74138596-74138615 | Msa0043120:intron | 55.0% | |
| TGATGCCAAACGCTTCCCAG+CGG | + | chr1_1:74138651-74138670 | None:intergenic | 55.0% | |
| GTATTCACCTAGACCGGGTG+TGG | + | chr1_1:74138729-74138748 | None:intergenic | 55.0% | |
| TCCAAGTGGTCCTTCTGCCT+TGG | - | chr1_1:74139450-74139469 | Msa0043120:intron | 55.0% | |
| AGCATATCGTGCAAGTCCCC+AGG | + | chr1_1:74139491-74139510 | None:intergenic | 55.0% | |
| ACAAGGCCGTTGTCCTGCAA+TGG | + | chr1_1:74140014-74140033 | None:intergenic | 55.0% | |
| GACACTGGAAGTTGCCGAGA+AGG | - | chr1_1:74140085-74140104 | Msa0043120:intron | 55.0% | |
| GCACCAGGTGTAACCATGCT+AGG | + | chr1_1:74140176-74140195 | None:intergenic | 55.0% | |
| GAAAGACACGTGCCATGGGT+TGG | + | chr1_1:74140850-74140869 | None:intergenic | 55.0% | |
| CCGTGCCAAAGCTAACTCCT+TGG | - | chr1_1:74140959-74140978 | Msa0043120:intron | 55.0% | |
| GCTAACTCCTTGGCTCAGCT+TGG | - | chr1_1:74140969-74140988 | Msa0043120:intron | 55.0% | |
| GCTTGGAAGATACTCTGCCG+AGG | - | chr1_1:74140986-74141005 | Msa0043120:intron | 55.0% | |
| CGGAAGAGAGACGTTGCGAG+TGG | + | chr1_1:74138221-74138240 | None:intergenic | 60.0% | |
| !! | TGCAACCGCTGGGAAGCGTT+TGG | - | chr1_1:74138643-74138662 | Msa0043120:intron | 60.0% |
| TTGCTCACCACACCCGGTCT+AGG | - | chr1_1:74138719-74138738 | Msa0043120:intron | 60.0% | |
| GCCAAGGCAGAAGGACCACT+TGG | + | chr1_1:74139454-74139473 | None:intergenic | 60.0% | |
| GGCCGCTTCCTTAACAGCCA+AGG | + | chr1_1:74139470-74139489 | None:intergenic | 60.0% | |
| TGGCTGTTAAGGAAGCGGCC+TGG | - | chr1_1:74139470-74139489 | Msa0043120:intron | 60.0% | |
| GGCTGTTAAGGAAGCGGCCT+GGG | - | chr1_1:74139471-74139490 | Msa0043120:intron | 60.0% | |
| GCTGTTAAGGAAGCGGCCTG+GGG | - | chr1_1:74139472-74139491 | Msa0043120:intron | 60.0% | |
| AGAGTTCCTCCTGCAGTCCC+CGG | - | chr1_1:74140260-74140279 | Msa0043120:intron | 60.0% | |
| ATGATTCCGGGGACTGCAGG+AGG | + | chr1_1:74140269-74140288 | None:intergenic | 60.0% | |
| TCCTGCAGTCCCCGGAATCA+TGG | - | chr1_1:74140268-74140287 | Msa0043120:intron | 60.0% | |
| ACCATGATTCCGGGGACTGC+AGG | + | chr1_1:74140272-74140291 | None:intergenic | 60.0% | |
| !! | CGTGCCATGGGTTGGGACTT+TGG | + | chr1_1:74140842-74140861 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74137945 | 74141371 | 74137945 | ID=Msa0043120;Name=Msa0043120 |
| chr1_1 | mRNA | 74137945 | 74141371 | 74137945 | ID=Msa0043120-mRNA-1;Parent=Msa0043120;Name=Msa0043120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=191|1|1|1|1|1|6|310|388 |
| chr1_1 | exon | 74137945 | 74138533 | 74137945 | ID=Msa0043120-mRNA-1:exon:24953;Parent=Msa0043120-mRNA-1 |
| chr1_1 | exon | 74139027 | 74139296 | 74139027 | ID=Msa0043120-mRNA-1:exon:24952;Parent=Msa0043120-mRNA-1 |
| chr1_1 | exon | 74139794 | 74139884 | 74139794 | ID=Msa0043120-mRNA-1:exon:24951;Parent=Msa0043120-mRNA-1 |
| chr1_1 | exon | 74139980 | 74140089 | 74139980 | ID=Msa0043120-mRNA-1:exon:24950;Parent=Msa0043120-mRNA-1 |
| chr1_1 | exon | 74140454 | 74140723 | 74140454 | ID=Msa0043120-mRNA-1:exon:24949;Parent=Msa0043120-mRNA-1 |
| chr1_1 | exon | 74141034 | 74141371 | 74141034 | ID=Msa0043120-mRNA-1:exon:24948;Parent=Msa0043120-mRNA-1 |
| chr1_1 | five_prime_UTR | 74141181 | 74141371 | 74141181 | ID=Msa0043120-mRNA-1:five_prime_utr;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74141034 | 74141180 | 74141034 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74140454 | 74140723 | 74140454 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74139980 | 74140089 | 74139980 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74139794 | 74139884 | 74139794 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74139027 | 74139296 | 74139027 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | CDS | 74138255 | 74138533 | 74138255 | ID=Msa0043120-mRNA-1:cds;Parent=Msa0043120-mRNA-1 |
| chr1_1 | three_prime_UTR | 74137945 | 74138254 | 74137945 | ID=Msa0043120-mRNA-1:three_prime_utr;Parent=Msa0043120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
