AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0074160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074160 MtrunA17_Chr1g0181751 89.412 935 37 2 1 900 1 908 0.0 1687
Msa0074160 MtrunA17_Chr4g0030181 55.663 309 96 7 1 269 1 308 3.05e-100 336
Msa0074160 MtrunA17_Chr4g0030181 37.398 369 196 16 557 900 674 1032 6.93e-46 178
Msa0074160 MtrunA17_Chr2g0325921 60.432 278 74 4 1 242 1 278 1.78e-96 325
Msa0074160 MtrunA17_Chr2g0325921 34.349 361 208 14 561 900 643 995 1.20e-36 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0074160 AT5G60170.2 33.660 1019 508 37 1 897 1 973 1.66e-121 393
Msa0074160 AT3G45630.2 56.209 306 97 3 1 269 1 306 5.12e-101 338
Msa0074160 AT3G45630.2 30.749 387 221 16 541 897 606 975 6.54e-31 131
Msa0074160 AT3G45630.1 56.209 306 97 3 1 269 1 306 5.12e-101 338
Msa0074160 AT3G45630.1 30.749 387 221 16 541 897 606 975 6.54e-31 131
Msa0074160 AT2G28540.1 51.090 321 116 4 1 282 1 319 3.46e-97 325
Msa0074160 AT2G28540.2 51.090 321 116 4 1 282 1 319 1.52e-96 325
Msa0074160 AT5G60170.1 52.976 336 112 7 1 290 1 336 9.63e-91 309
Msa0074160 AT5G60170.1 30.641 359 213 15 564 897 624 971 7.51e-27 118
Msa0074160 AT5G62910.1 43.333 60 28 1 8 67 251 304 9.76e-12 67.8
Msa0074160 AT5G62910.2 43.333 60 28 1 8 67 251 304 9.76e-12 67.8
Msa0074160 AT3G48070.1 44.828 58 26 1 8 65 243 294 1.70e-11 67.0
Msa0074160 AT3G48070.2 44.828 58 26 1 8 65 243 294 3.27e-11 66.2
Msa0074160 AT1G74870.1 49.180 61 24 2 2 62 206 259 4.07e-11 65.5
Msa0074160 AT3G48070.3 44.828 58 26 1 8 65 194 245 4.28e-11 65.5

Find 255 sgRNAs with CRISPR-Local

Find 615 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTGTGACAGAATTTC+AGG 0.180494 1_2:-48403589 None:intergenic
GATATATATTAAACTCTATT+TGG 0.214080 1_2:-48404251 None:intergenic
CGCAACCTCGTGTACATAAT+TGG 0.216432 1_2:+48396872 Msa0074160:CDS
GTTACTGTGACGAAACTTTC+TGG 0.228390 1_2:+48400238 Msa0074160:CDS
ACTTACATCTAAAGAACTTT+TGG 0.233420 1_2:-48399475 None:intergenic
TTCATTTGCAGGGCTTGTTT+TGG 0.243269 1_2:+48397522 Msa0074160:intron
AACTCGACCGATTCCTCTTT+AGG 0.255910 1_2:+48400505 Msa0074160:CDS
AATTCTGAACAAACAATTTC+AGG 0.260991 1_2:-48404114 None:intergenic
CAGCAATCATTTGGGGTTGC+TGG 0.261328 1_2:+48401066 Msa0074160:CDS
TTTCAGATCATATTGGAAAT+AGG 0.261331 1_2:+48403100 Msa0074160:CDS
CACTGCCAAGCACTGGAATC+TGG 0.262289 1_2:+48403661 Msa0074160:three_prime_UTR
GAAGTATTGAATAATGAAAT+AGG 0.264396 1_2:+48403300 Msa0074160:CDS
CTGATTTGCAGCAATCATTT+GGG 0.265234 1_2:+48401058 Msa0074160:CDS
AGACAGGCCACTGAAATAAT+TGG 0.270957 1_2:-48403271 None:intergenic
AATAATTTGAATCGTCCTTC+AGG 0.272128 1_2:+48399390 Msa0074160:CDS
TTTCCCTTCAATGCACTAAT+AGG 0.272870 1_2:+48403430 Msa0074160:three_prime_UTR
GCCGACCTTGGCGGTTATTA+TGG 0.274091 1_2:+48403758 Msa0074160:three_prime_UTR
GAAACTACAATCGAAGTTAT+AGG 0.282433 1_2:+48404023 Msa0074160:three_prime_UTR
ATTAGTTGTTCAGTCAATTC+AGG 0.284421 1_2:-48403371 None:intergenic
GCTTCAGATGATGGCTTGAT+TGG 0.295084 1_2:-48400705 None:intergenic
ATTCAACCACACCAGCCTTT+TGG 0.298993 1_2:+48400566 Msa0074160:CDS
AAGGCTTCCCCGAATGATTC+TGG 0.299501 1_2:-48400747 None:intergenic
AAGCAACCCCTGGCAGGGTT+TGG 0.309174 1_2:-48400060 None:intergenic
CAGTTCAGTAGTAATATTCT+TGG 0.321542 1_2:+48403216 Msa0074160:CDS
CCAGATGCATAATTCCCTTT+AGG 0.322792 1_2:-48401096 None:intergenic
TCAAGACTTTCAGATCATAT+TGG 0.327796 1_2:+48403093 Msa0074160:CDS
TTCTGTGAGTACAAGCTTCC+TGG 0.329107 1_2:+48400330 Msa0074160:CDS
GTGCTATCAGATAAATTTGA+TGG 0.329880 1_2:+48401186 Msa0074160:CDS
TCTGATTTGCAGCAATCATT+TGG 0.331891 1_2:+48401057 Msa0074160:CDS
AGACTTGTTTCAAATCTGTT+TGG 0.334593 1_2:+48403555 Msa0074160:three_prime_UTR
ACTCGACCGATTCCTCTTTA+GGG 0.334806 1_2:+48400506 Msa0074160:CDS
TTGTAGCACCAATGATTTGT+AGG 0.340037 1_2:-48399368 None:intergenic
GGCAGCTCCATTGCTTGAAC+CGG 0.342584 1_2:-48399654 None:intergenic
AGCAACCCCTGGCAGGGTTT+GGG 0.345017 1_2:-48400059 None:intergenic
GAATAACAGAATACCGAGTT+TGG 0.347953 1_2:-48404142 None:intergenic
TTCATCACGTGCTGGTAATC+TGG 0.349908 1_2:+48400006 Msa0074160:CDS
ATCGAAGTTATAGGCCTTAC+TGG 0.351396 1_2:+48404032 Msa0074160:three_prime_UTR
ACCTGGACTGATTATTGTCT+TGG 0.354617 1_2:-48400996 None:intergenic
ATTTGATGGAAGTCTGTCTT+TGG 0.355483 1_2:+48401200 Msa0074160:CDS
AAGTATTGAATAATGAAATA+GGG 0.358868 1_2:+48403301 Msa0074160:CDS
AAGGTTTGCCCCAGGTTAAA+AGG 0.359911 1_2:-48402991 None:intergenic
ACACAATTTCAGCCACATAA+AGG 0.360300 1_2:-48403504 None:intergenic
CATGCTATGAATGGTGAAAT+AGG 0.361239 1_2:+48404064 Msa0074160:three_prime_UTR
AAACTCACTGGAAAATTTAG+AGG 0.365826 1_2:-48401226 None:intergenic
GTTCTATAAGCATCACTTTG+AGG 0.368135 1_2:-48403129 None:intergenic
ACTAGGGCAAGGTGTGTATC+TGG 0.372035 1_2:+48399956 Msa0074160:intron
GAATGCAGTTGTTCAGAAAA+TGG 0.376217 1_2:-48403189 None:intergenic
TTCATATTTCACTCGGGATT+CGG 0.378364 1_2:+48400462 Msa0074160:CDS
GAACAGAGTTGTAATAGTTC+TGG 0.383667 1_2:+48402718 Msa0074160:CDS
GGTATGTACAAAGTTAGTTT+TGG 0.385495 1_2:+48404204 Msa0074160:three_prime_UTR
TATAATGGAAATGGCTCATA+AGG 0.385777 1_2:+48396585 Msa0074160:CDS
TTCCTTCCATCTGATGATTT+AGG 0.390471 1_2:-48396821 None:intergenic
TTGAACCGGATTCTTTAATC+TGG 0.391628 1_2:-48399640 None:intergenic
GTGGCTGATGATACATGTTT+AGG 0.393495 1_2:-48399441 None:intergenic
ATTCGTAACCAGAATCATTC+GGG 0.393709 1_2:+48400739 Msa0074160:CDS
AAAGAGGAATCGGTCGAGTT+AGG 0.394430 1_2:-48400502 None:intergenic
TCAGCAGCTTCCGTGGGCCT+TGG 0.396088 1_2:+48400289 Msa0074160:CDS
TCCTCCACTATTCCCCTACT+AGG 0.401309 1_2:-48402952 None:intergenic
GACTGAACAACTAATATTCA+TGG 0.407825 1_2:+48403379 Msa0074160:exon
CGGTGCAAGCAACCCCTGGC+AGG 0.407841 1_2:-48400066 None:intergenic
CACAATTTCAGCCACATAAA+GGG 0.413015 1_2:-48403503 None:intergenic
GCGACTGAATTGAGGAAGTA+AGG 0.414883 1_2:-48403010 None:intergenic
GATTGCCGTTGACCATTTGA+TGG 0.426623 1_2:-48403612 None:intergenic
CTATGGTATTTGACCCTAGT+AGG 0.428418 1_2:+48402938 Msa0074160:CDS
TGTATCAAGAATAGACCTTT+CGG 0.429650 1_2:-48400086 None:intergenic
GAAGATGAACTAGTATCCTT+TGG 0.429995 1_2:-48399986 None:intergenic
GCGCAAAGCAGGTGCTTTGA+AGG 0.432491 1_2:-48400968 None:intergenic
AATTCGTAACCAGAATCATT+CGG 0.433629 1_2:+48400738 Msa0074160:CDS
TGCAGGAAGTGCTGTTGAAT+TGG 0.437192 1_2:-48399675 None:intergenic
GTTTAGGATCATCTGGTGGT+GGG 0.437738 1_2:-48399425 None:intergenic
TCCATCTCTTCGGTACATAT+CGG 0.437890 1_2:-48396109 None:intergenic
CACAATTATATCTTCCCAAA+AGG 0.441190 1_2:-48400581 None:intergenic
TTACAGTTGTCAGACATAAC+TGG 0.442635 1_2:+48403694 Msa0074160:three_prime_UTR
ACAATGCGTTCTTTGTCATA+AGG 0.443225 1_2:-48396643 None:intergenic
TTGGCATCATATAATGGAAA+TGG 0.443228 1_2:+48396576 Msa0074160:CDS
CACAGATCTGTGTATGGTGT+TGG 0.443926 1_2:+48396557 Msa0074160:intron
AGATTCAATAGTTAAGTTGT+TGG 0.444149 1_2:+48400921 Msa0074160:CDS
CAAATAACCAGTGGGGAAGT+TGG 0.446372 1_2:+48403241 Msa0074160:CDS
ATTGATTCCCAAACCCTGCC+AGG 0.447858 1_2:+48400052 Msa0074160:CDS
ATCAGTCAGGTCCATCTCTT+CGG 0.447989 1_2:-48396119 None:intergenic
CAAAGAACGCATTGTGGCTA+TGG 0.450857 1_2:+48396651 Msa0074160:CDS
ACCAGTACCCTCACTCTTCA+CGG 0.451024 1_2:-48400812 None:intergenic
TCGATATCTCGTACAGCAAC+GGG 0.451883 1_2:+48397131 Msa0074160:CDS
CACTTCCTGCAGCCAACTCT+TGG 0.453295 1_2:+48399687 Msa0074160:CDS
AGAGCCTATTAGTGCATTGA+AGG 0.454023 1_2:-48403434 None:intergenic
TTTAGGATCATCTGGTGGTG+GGG 0.458958 1_2:-48399424 None:intergenic
GATACATGTTTAGGATCATC+TGG 0.463183 1_2:-48399432 None:intergenic
TATGCATCTGGTGGTTGTAA+TGG 0.463874 1_2:+48401108 Msa0074160:CDS
CATGTGGTGCGGTGATCTCC+AGG 0.463912 1_2:-48400348 None:intergenic
CGTGGGCCTTGGTCAAGAAA+AGG 0.470197 1_2:+48400300 Msa0074160:CDS
GATAGCACAGAATTGCTTGA+TGG 0.470483 1_2:-48401171 None:intergenic
AAGAACCAGATTAAAGAATC+CGG 0.476974 1_2:+48399635 Msa0074160:intron
CCTAAAGGGAATTATGCATC+TGG 0.477224 1_2:+48401096 Msa0074160:CDS
TCAGAATTTGTTTCCAAACT+CGG 0.482425 1_2:+48404129 Msa0074160:three_prime_UTR
ACTGCCAAGCACTGGAATCT+GGG 0.485252 1_2:+48403662 Msa0074160:three_prime_UTR
GTCACAATTATGCCATCAAA+TGG 0.485642 1_2:+48403600 Msa0074160:three_prime_UTR
ATGCAAATGCTTCCCTAAAG+AGG 0.485653 1_2:-48400518 None:intergenic
TGTTTAGGATCATCTGGTGG+TGG 0.485806 1_2:-48399426 None:intergenic
CTCCATCTGTAAATATCAGC+AGG 0.487534 1_2:+48402890 Msa0074160:CDS
ATAATTTGAATCGTCCTTCA+GGG 0.488053 1_2:+48399391 Msa0074160:CDS
GTCTTTGGAACTAGATGCAT+GGG 0.488988 1_2:+48400897 Msa0074160:CDS
GCTTCAGATGCTGATCAGTC+AGG 0.491128 1_2:-48396132 None:intergenic
AGGGAGTACTTTGGAAGGTA+TGG 0.494301 1_2:+48397092 Msa0074160:CDS
ATGCTTCCCTAAAGAGGAAT+CGG 0.494776 1_2:-48400512 None:intergenic
GGATGTGCATGGCTCATGTT+CGG 0.498770 1_2:+48400402 Msa0074160:CDS
TGACCCTAGTAGGGGAATAG+TGG 0.500098 1_2:+48402948 Msa0074160:CDS
CGGAGAAGAGAGAGTGGTGG+TGG 0.501583 1_2:-48395238 None:intergenic
TCAATACTTCAGACATAGAC+AGG 0.502092 1_2:-48403287 None:intergenic
TGAAGGTACAGATACACTAT+TGG 0.504841 1_2:-48400152 None:intergenic
TCTTCATTGCGACTGAATTG+AGG 0.507830 1_2:-48403018 None:intergenic
TTGTCTGGCAAAGGAAAACC+TGG 0.512658 1_2:-48401013 None:intergenic
TCTGTAAATATCAGCAGGAT+AGG 0.517263 1_2:+48402895 Msa0074160:CDS
CTTTCGGTGCAAGCAACCCC+TGG 0.517643 1_2:-48400070 None:intergenic
ATGCTTATAGAACTAATTCG+AGG 0.518286 1_2:+48403139 Msa0074160:CDS
TTGCTGGACATGATCCTAAA+GGG 0.518964 1_2:+48401082 Msa0074160:CDS
TGTTAAAAGATCCCTTTATG+TGG 0.522640 1_2:+48403492 Msa0074160:three_prime_UTR
ATAAATCCATTACCAAGAGT+TGG 0.523397 1_2:-48399699 None:intergenic
GCTCATGCTTCAAGTCCACC+TGG 0.528672 1_2:+48402646 Msa0074160:CDS
CATCTGAAGCCGTGCAAATG+TGG 0.529368 1_2:+48396145 Msa0074160:CDS
AATGATTCCAATTATTTCAG+TGG 0.530132 1_2:+48403264 Msa0074160:CDS
TCCGATATGTACCGAAGAGA+TGG 0.530600 1_2:+48396108 Msa0074160:CDS
CCTCCACTATTCCCCTACTA+GGG 0.530781 1_2:-48402951 None:intergenic
AGTAGGGTCCTACAAATCAT+TGG 0.533965 1_2:+48399360 Msa0074160:CDS
TTAGCTTCACTGCCAAGCAC+TGG 0.533987 1_2:+48403654 Msa0074160:three_prime_UTR
AACTTATTCAGCAGCTTCCG+TGG 0.534099 1_2:+48400282 Msa0074160:CDS
ATTATATCTTCCCAAAAGGC+TGG 0.535132 1_2:-48400577 None:intergenic
ATCTTCCCAAAAGGCTGGTG+TGG 0.535708 1_2:-48400572 None:intergenic
GCATGAATTTCCCACCAGTA+AGG 0.536061 1_2:-48404046 None:intergenic
AAAGAATCCGGTTCAAGCAA+TGG 0.536155 1_2:+48399647 Msa0074160:CDS
AATCATTCCAACTTCCCCAC+TGG 0.536419 1_2:-48403248 None:intergenic
ATCAAGCCATCATCTGAAGC+AGG 0.536789 1_2:+48400708 Msa0074160:CDS
AGTATTGAATAATGAAATAG+GGG 0.537525 1_2:+48403302 Msa0074160:CDS
GGTGCAAGCAACCCCTGGCA+GGG 0.537936 1_2:-48400065 None:intergenic
TTGATTCCCAAACCCTGCCA+GGG 0.540424 1_2:+48400053 Msa0074160:CDS
CAGGGGTTGCTTGCACCGAA+AGG 0.541133 1_2:+48400071 Msa0074160:CDS
TTGCTTGATGGGAAAGCGTA+TGG 0.541973 1_2:-48401159 None:intergenic
GTTGCTGGACATGATCCTAA+AGG 0.542234 1_2:+48401081 Msa0074160:CDS
ACCTCATAGCCACATTTGCA+CGG 0.542997 1_2:-48396154 None:intergenic
ATGGTGTTGGCATCATATAA+TGG 0.543359 1_2:+48396570 Msa0074160:CDS
TATGGTATTTGACCCTAGTA+GGG 0.545322 1_2:+48402939 Msa0074160:CDS
GTCAGGAGAGCCGACCTTGG+CGG 0.545951 1_2:+48403749 Msa0074160:three_prime_UTR
CTTGATTGGCTTAGATTCTG+AGG 0.546144 1_2:-48400691 None:intergenic
TGTCTTTGGAACTAGATGCA+TGG 0.546869 1_2:+48400896 Msa0074160:CDS
TAACAAGGCAGTTTCAAGTC+GGG 0.547611 1_2:+48400381 Msa0074160:CDS
GTCGATATCTCGTACAGCAA+CGG 0.548555 1_2:+48397130 Msa0074160:CDS
TGTTGAGTTCAAGAATCCTA+TGG 0.549167 1_2:+48402921 Msa0074160:CDS
TTGAAGATTCATATTTCACT+CGG 0.550404 1_2:+48400455 Msa0074160:CDS
AGGTACAGATACACTATTGG+TGG 0.551077 1_2:-48400149 None:intergenic
CATTACCAAGAGTTGGCTGC+AGG 0.551503 1_2:-48399692 None:intergenic
GCAGCGATAATTTAGCCTCC+AGG 0.551527 1_2:+48400650 Msa0074160:CDS
CCATGCATGACAATACTTTG+TGG 0.552172 1_2:-48397547 None:intergenic
TGATTTGCAGCAATCATTTG+GGG 0.553932 1_2:+48401059 Msa0074160:CDS
ACAATGAGGTGAATAATGCC+TGG 0.554007 1_2:-48400668 None:intergenic
AGGACCCAGATTCCAGTGCT+TGG 0.554245 1_2:-48403666 None:intergenic
TTAGGATCATCTGGTGGTGG+GGG 0.555822 1_2:-48399423 None:intergenic
CTTCAACGTAGGGAGTACTT+TGG 0.557460 1_2:+48397083 Msa0074160:CDS
TCCAAGACAATAATCAGTCC+AGG 0.558162 1_2:+48400995 Msa0074160:CDS
GTACTTTGGAAGGTATGGAA+AGG 0.558874 1_2:+48397097 Msa0074160:CDS
GCAGGCAGGACAACGGCCCT+CGG 0.559341 1_2:-48396614 None:intergenic
ATAGCACAGAATTGCTTGAT+GGG 0.561523 1_2:-48401170 None:intergenic
TAAGCAAACAAGAGTGGGTG+AGG 0.562447 1_2:-48403634 None:intergenic
TCATAAGGTGAACGGCAGGC+AGG 0.563242 1_2:-48396628 None:intergenic
GTGAGTGAATGAGAGAGAGA+AGG 0.563915 1_2:-48395186 None:intergenic
AGCCTAAATCATCAGATGGA+AGG 0.565652 1_2:+48396819 Msa0074160:CDS
TCTTGGTTCAAATAACCAGT+GGG 0.566345 1_2:+48403233 Msa0074160:CDS
ATAATTGTGACAGAATTTCA+GGG 0.567695 1_2:-48403588 None:intergenic
TGGTTCAGATGTTGATAACA+AGG 0.567738 1_2:+48400831 Msa0074160:CDS
GAGAAGACCGTGAAGAGTGA+GGG 0.567760 1_2:+48400805 Msa0074160:CDS
ACCATAATAACCGCCAAGGT+CGG 0.571077 1_2:-48403759 None:intergenic
TGAGTCAATTGTTATCAATG+AGG 0.573873 1_2:+48400216 Msa0074160:CDS
TTTGTCATAAGGTGAACGGC+AGG 0.574302 1_2:-48396632 None:intergenic
TCTTCATCTGCAAGGTGAAG+AGG 0.574669 1_2:-48396899 None:intergenic
AAGTTATAGGCCTTACTGGT+GGG 0.576685 1_2:+48404036 Msa0074160:three_prime_UTR
AGTTCATCTTCATCACGTGC+TGG 0.577681 1_2:+48399998 Msa0074160:CDS
TTAAAGCCTAAATCATCAGA+TGG 0.577945 1_2:+48396815 Msa0074160:CDS
TTGAACAAACATCACATTGG+TGG 0.578775 1_2:+48400178 Msa0074160:CDS
AACTTGATATTCTCATAACT+AGG 0.580208 1_2:-48403342 None:intergenic
CTACTAGGGTCAAATACCAT+AGG 0.581897 1_2:-48402937 None:intergenic
TGAAGATTCATATTTCACTC+GGG 0.583365 1_2:+48400456 Msa0074160:CDS
GTAGGGGAATAGTGGAGGAA+AGG 0.584951 1_2:+48402956 Msa0074160:CDS
CTTAGATTCTGAGGACAATG+AGG 0.586654 1_2:-48400682 None:intergenic
CAGATTTGAAACAAGTCTCA+AGG 0.587356 1_2:-48403550 None:intergenic
AACTCACATCTTCATCTGCA+AGG 0.587859 1_2:-48396907 None:intergenic
AGAGAAGACCGTGAAGAGTG+AGG 0.588042 1_2:+48400804 Msa0074160:CDS
TGTCAGACATAACTGGCAAA+CGG 0.590797 1_2:+48403701 Msa0074160:three_prime_UTR
GGCTCTCAGATGGCAGTGTG+TGG 0.592367 1_2:+48403451 Msa0074160:three_prime_UTR
GAGGAAGTAAGGTTTGCCCC+AGG 0.593890 1_2:-48402999 None:intergenic
GAAGCTAAGCAAACAAGAGT+GGG 0.594190 1_2:-48403639 None:intergenic
CCACAAAGTATTGTCATGCA+TGG 0.596103 1_2:+48397547 Msa0074160:CDS
GAGCGGAGAAGAGAGAGTGG+TGG 0.597007 1_2:-48395241 None:intergenic
CCACCAGCTACTTCAACGTA+GGG 0.597126 1_2:+48397073 Msa0074160:intron
AAATGATTGCTGCAAATCAG+AGG 0.597628 1_2:-48401055 None:intergenic
TGAGAGCGGAGAAGAGAGAG+TGG 0.597775 1_2:-48395244 None:intergenic
AGGAAGCTTGTACTCACAGA+AGG 0.598102 1_2:-48400328 None:intergenic
GGTTCAGTAAAATATTCAGA+AGG 0.600729 1_2:-48400766 None:intergenic
CTGCTGATATTTACAGATGG+AGG 0.601283 1_2:-48402889 None:intergenic
GGTGCTTTGAAGGATGTGTA+TGG 0.601951 1_2:-48400958 None:intergenic
ACTTATTCAGCAGCTTCCGT+GGG 0.602554 1_2:+48400283 Msa0074160:CDS
GAAGTTATAGGCCTTACTGG+TGG 0.604366 1_2:+48404035 Msa0074160:three_prime_UTR
AATGTCAGGAGAGCCGACCT+TGG 0.605273 1_2:+48403746 Msa0074160:three_prime_UTR
AGAAAAGCTTACAGTGAGAG+CGG 0.608531 1_2:-48395258 None:intergenic
TGAAGCTAAGCAAACAAGAG+TGG 0.610309 1_2:-48403640 None:intergenic
GTTTCAAGTCGGGATGTGCA+TGG 0.610826 1_2:+48400391 Msa0074160:CDS
TGTATCTGGCAGTCTTCCAA+AGG 0.610994 1_2:+48399970 Msa0074160:CDS
ACCGTGAAGAGTGAGGGTAC+TGG 0.611276 1_2:+48400811 Msa0074160:CDS
ATCCTGCTGATATTTACAGA+TGG 0.611333 1_2:-48402892 None:intergenic
CTAACAAGGCAGTTTCAAGT+CGG 0.612322 1_2:+48400380 Msa0074160:CDS
CTATGGCAGCTAACTGTCGA+AGG 0.612354 1_2:+48396668 Msa0074160:CDS
TGATGTTTGTTCAACTCTGA+AGG 0.613376 1_2:-48400169 None:intergenic
TCCACCAGCTACTTCAACGT+AGG 0.615567 1_2:+48397072 Msa0074160:intron
CTCATGCTTCAAGTCCACCT+GGG 0.617092 1_2:+48402647 Msa0074160:CDS
CCCTAGTAGGGGAATAGTGG+AGG 0.622353 1_2:+48402951 Msa0074160:CDS
GTTCTTTGTCATAAGGTGAA+CGG 0.623891 1_2:-48396636 None:intergenic
TGGGAAATTCATGCTATGAA+TGG 0.624607 1_2:+48404055 Msa0074160:three_prime_UTR
AACGTAGGGAGTACTTTGGA+AGG 0.624800 1_2:+48397087 Msa0074160:CDS
GGCTCATAAGGATGAAACCG+AGG 0.625328 1_2:+48396597 Msa0074160:CDS
AACTCACTGGAAAATTTAGA+GGG 0.627206 1_2:-48401225 None:intergenic
GTCTGACAACTGTAATGCAT+AGG 0.627452 1_2:-48403686 None:intergenic
TGATTCCCAAACCCTGCCAG+GGG 0.628214 1_2:+48400054 Msa0074160:CDS
AACAAGGTTTCTTCAGACGT+CGG 0.630644 1_2:+48400847 Msa0074160:CDS
TGCTTGATGGGAAAGCGTAT+GGG 0.632136 1_2:-48401158 None:intergenic
TTCTTGGTTCAAATAACCAG+TGG 0.634073 1_2:+48403232 Msa0074160:CDS
CTGTCTGACATTGCAAACCC+AGG 0.638003 1_2:-48402664 None:intergenic
TGCACTAATAGGCTCTCAGA+TGG 0.639965 1_2:+48403441 Msa0074160:three_prime_UTR
GAGCCTATTAGTGCATTGAA+GGG 0.641833 1_2:-48403433 None:intergenic
GATCAACAACAACACGGCAA+AGG 0.646466 1_2:+48400628 Msa0074160:CDS
TTATGCCATCAAATGGTCAA+CGG 0.646638 1_2:+48403607 Msa0074160:three_prime_UTR
TTGTTAGTATTCAAATCATG+TGG 0.654500 1_2:-48400364 None:intergenic
ACTCTCCCGCGAGAAAACCC+AGG 0.659154 1_2:-48402694 None:intergenic
AAAGGGAATTATGCATCTGG+TGG 0.660201 1_2:+48401099 Msa0074160:CDS
GTGAACGGCAGGCAGGACAA+CGG 0.664000 1_2:-48396621 None:intergenic
GCTCATAAGGATGAAACCGA+GGG 0.665241 1_2:+48396598 Msa0074160:CDS
TCTGACATTGCAAACCCAGG+TGG 0.667610 1_2:-48402661 None:intergenic
ATGGTATTTGACCCTAGTAG+GGG 0.670671 1_2:+48402940 Msa0074160:CDS
CAAATATGACTTTAGTACTG+TGG 0.671167 1_2:+48404183 Msa0074160:three_prime_UTR
GCCGTGCAAATGTGGCTATG+AGG 0.674534 1_2:+48396153 Msa0074160:CDS
ACTCACCATAATAACCGCCA+AGG 0.679005 1_2:-48403763 None:intergenic
ATGTCAGACAGAATACCACC+TGG 0.679445 1_2:+48402676 Msa0074160:CDS
ACATGATTTGAATACTAACA+AGG 0.682637 1_2:+48400366 Msa0074160:CDS
GACTGTGATCAACAACAACA+CGG 0.682869 1_2:+48400622 Msa0074160:CDS
TCATGCATGGCTCAGAAATG+TGG 0.685600 1_2:+48397560 Msa0074160:CDS
TGAACAACTAATATTCATGG+TGG 0.689343 1_2:+48403382 Msa0074160:three_prime_UTR
GAGTTGAACAAACATCACAT+TGG 0.697798 1_2:+48400175 Msa0074160:CDS
CTTGGTTCAAATAACCAGTG+GGG 0.702385 1_2:+48403234 Msa0074160:CDS
TTATGACAAAGAACGCATTG+TGG 0.704239 1_2:+48396645 Msa0074160:CDS
TATTGTGTAGCTGAATACCG+TGG 0.706869 1_2:+48396053 Msa0074160:intron
TTCGTAACCAGAATCATTCG+GGG 0.706891 1_2:+48400740 Msa0074160:CDS
ACAGATGGAGGAGCATACTG+TGG 0.707322 1_2:-48402877 None:intergenic
GCAGTCCAATTATGTACACG+AGG 0.715517 1_2:-48396877 None:intergenic
TGTCAGACAGAATACCACCT+GGG 0.740545 1_2:+48402677 Msa0074160:CDS
AGTATTCAAATCATGTGGTG+CGG 0.743229 1_2:-48400359 None:intergenic
CTCCCGCGAGAAAACCCAGG+TGG 0.744790 1_2:-48402691 None:intergenic
GTATTGAATAATGAAATAGG+GGG 0.745932 1_2:+48403303 Msa0074160:CDS
ATGAGGTGAATAATGCCTGG+AGG 0.749776 1_2:-48400665 None:intergenic
ACATGTTTAGGATCATCTGG+TGG 0.761344 1_2:-48399429 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAATGAGTTA+GGG - chr1_2:48397860-48397879 None:intergenic 10.0%
!! TTAAATAAAAAAAATGAGTT+AGG - chr1_2:48397861-48397880 None:intergenic 10.0%
!!! TTTTTTTTATTTAACTATAG+AGG + chr1_2:48397867-48397886 Msa0074160:intron 10.0%
!! ACTATAATATAAAAAACATT+TGG + chr1_2:48402012-48402031 Msa0074160:intron 10.0%
!!! ATATCAAGTAATCAATTTTT+AGG + chr1_2:48396721-48396740 Msa0074160:intron 15.0%
!!! GATTTAATTTTCTTATCTTT+AGG + chr1_2:48397344-48397363 Msa0074160:intron 15.0%
!!! TTCTACTATTTTGTTTTTTT+AGG + chr1_2:48399558-48399577 Msa0074160:intron 15.0%
!! AAAAAAATAAAAAAACTCAC+TGG - chr1_2:48401241-48401260 None:intergenic 15.0%
!!! TTTTTTTTTTGTTTTTTGAG+AGG + chr1_2:48401594-48401613 Msa0074160:intron 15.0%
!!! TTCTGTTTTATTTTATTATG+TGG + chr1_2:48401766-48401785 Msa0074160:intron 15.0%
!!! TTTTTTTACTTTTCTACTAT+AGG + chr1_2:48402068-48402087 Msa0074160:intron 15.0%
!!! AAGTATTGAATAATGAAATA+GGG + chr1_2:48403301-48403320 Msa0074160:CDS 15.0%
!!! TAAAATTTAAGGTATAAACA+TGG - chr1_2:48403913-48403932 None:intergenic 15.0%
!! CATATAAAAGGTAAAATTTA+AGG - chr1_2:48403924-48403943 None:intergenic 15.0%
!! GATATATATTAAACTCTATT+TGG - chr1_2:48404254-48404273 None:intergenic 15.0%
!!! TTTCATTTCACTTTTTCTTA+GGG + chr1_2:48395328-48395347 Msa0074160:intron 20.0%
!!! TGAAATTTGTTGCAATTATT+AGG + chr1_2:48395629-48395648 Msa0074160:intron 20.0%
!! TTAAGATGAAAAAACCTATT+TGG + chr1_2:48396424-48396443 Msa0074160:intron 20.0%
!! TTAAACTACACAAACTAATA+TGG - chr1_2:48396997-48397016 None:intergenic 20.0%
!! AAAACATGTTATCAATTGAA+GGG - chr1_2:48397046-48397065 None:intergenic 20.0%
!! AAAAACATGTTATCAATTGA+AGG - chr1_2:48397047-48397066 None:intergenic 20.0%
!!! TCAATTGATAACATGTTTTT+TGG + chr1_2:48397047-48397066 Msa0074160:intron 20.0%
!! GAAAATAATGACATAAACAA+GGG - chr1_2:48397260-48397279 None:intergenic 20.0%
!! AGAAAATAATGACATAAACA+AGG - chr1_2:48397261-48397280 None:intergenic 20.0%
!! GTATATCTATAGTATTATTC+CGG + chr1_2:48397680-48397699 Msa0074160:intron 20.0%
!! GATAATTTATATAGTATGTG+AGG - chr1_2:48398071-48398090 None:intergenic 20.0%
!! TACTATATAAATTATCTTGC+TGG + chr1_2:48398075-48398094 Msa0074160:intron 20.0%
!! ATTCAAAAGTTCAATCAAAA+TGG - chr1_2:48398233-48398252 None:intergenic 20.0%
!!! GTAATGGATTTATGAATATT+TGG + chr1_2:48399709-48399728 Msa0074160:intron 20.0%
!! ATTCTTGATACAAAAAAATC+AGG + chr1_2:48400097-48400116 Msa0074160:CDS 20.0%
!! TTCTTGATACAAAAAAATCA+GGG + chr1_2:48400098-48400117 Msa0074160:CDS 20.0%
!!! TATATCTAACATTTTGTCTT+TGG + chr1_2:48400882-48400901 Msa0074160:CDS 20.0%
!! TTAACAAAATTTGATGTTCA+TGG + chr1_2:48401689-48401708 Msa0074160:intron 20.0%
!! TAACAAAATTTGATGTTCAT+GGG + chr1_2:48401690-48401709 Msa0074160:intron 20.0%
!!! TTATAGTTGCACTTTTTAAT+AGG - chr1_2:48401999-48402018 None:intergenic 20.0%
!! ATAATGCATCTTTAATAAAG+CGG + chr1_2:48402412-48402431 Msa0074160:intron 20.0%
!!! GAAGTATTGAATAATGAAAT+AGG + chr1_2:48403300-48403319 Msa0074160:CDS 20.0%
!!! AGTATTGAATAATGAAATAG+GGG + chr1_2:48403302-48403321 Msa0074160:CDS 20.0%
!!! TATTATGGTGAGTTTTAAAT+TGG + chr1_2:48403773-48403792 Msa0074160:intron 20.0%
!!! CTTTCATTTCACTTTTTCTT+AGG + chr1_2:48395327-48395346 Msa0074160:intron 25.0%
! ATAAACAAACGCAGAATAAT+CGG - chr1_2:48395481-48395500 None:intergenic 25.0%
! CAACGTATACAAAAAATAAG+CGG - chr1_2:48395519-48395538 None:intergenic 25.0%
!!! TTTTTCCTCTCTTTGTTTTT+AGG + chr1_2:48395842-48395861 Msa0074160:intron 25.0%
!!! TTTTCCTCTCTTTGTTTTTA+GGG + chr1_2:48395843-48395862 Msa0074160:intron 25.0%
!!! TTGTTGTTCTTCTTGTTTTT+AGG + chr1_2:48395923-48395942 Msa0074160:intron 25.0%
!!! TGTTGTTCTTCTTGTTTTTA+GGG + chr1_2:48395924-48395943 Msa0074160:intron 25.0%
!! ATTGTTTTCTTGTTCTCATT+AGG + chr1_2:48396010-48396029 Msa0074160:intron 25.0%
!! TTGTTTTCTTGTTCTCATTA+GGG + chr1_2:48396011-48396030 Msa0074160:intron 25.0%
! ATGATACACATGTAAGAAAA+TGG - chr1_2:48396232-48396251 None:intergenic 25.0%
! AAGAACTCATAATATGTCTT+CGG - chr1_2:48396384-48396403 None:intergenic 25.0%
! TATCAATTGAAGGGATAAAA+TGG - chr1_2:48397037-48397056 None:intergenic 25.0%
! TCTACCTAATTATCATTTGA+AGG + chr1_2:48397280-48397299 Msa0074160:intron 25.0%
!!! GTTCATTTTTTTGTACTAGA+AGG + chr1_2:48397415-48397434 Msa0074160:CDS 25.0%
!!! TAAGGATATACCATTTTGAT+TGG + chr1_2:48397451-48397470 Msa0074160:intron 25.0%
!!! AAGGATATACCATTTTGATT+GGG + chr1_2:48397452-48397471 Msa0074160:intron 25.0%
! TGGATTAAACTTTGTAGAAT+GGG + chr1_2:48397658-48397677 Msa0074160:intron 25.0%
! TATTATTCCGGAAATAATTC+TGG + chr1_2:48397692-48397711 Msa0074160:intron 25.0%
! TAAAACTGAAAAGATAACAC+AGG + chr1_2:48397766-48397785 Msa0074160:intron 25.0%
! AAAACTGAAAAGATAACACA+GGG + chr1_2:48397767-48397786 Msa0074160:intron 25.0%
! TACGTAAGGAAATAATTTAG+TGG - chr1_2:48397940-48397959 None:intergenic 25.0%
! TGCTAATACTAATTCATCTT+TGG - chr1_2:48398167-48398186 None:intergenic 25.0%
! AATTAGTATTAGCATTTGCA+AGG + chr1_2:48398173-48398192 Msa0074160:intron 25.0%
!! TTTGGCAGTTCAAATTTTAA+TGG + chr1_2:48398311-48398330 Msa0074160:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_2:48398452-48398471 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_2:48398461-48398480 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_2:48398460-48398479 Msa0074160:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_2:48398461-48398480 Msa0074160:intron 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG + chr1_2:48398619-48398638 Msa0074160:intron 25.0%
!! TCTTCTTTGATTGTAGTTTT+GGG + chr1_2:48398620-48398639 Msa0074160:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_2:48398452-48398471 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_2:48398461-48398480 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_2:48398460-48398479 Msa0074160:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_2:48398461-48398480 Msa0074160:intron 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG + chr1_2:48398619-48398638 Msa0074160:intron 25.0%
!! TCTTCTTTGATTGTAGTTTT+GGG + chr1_2:48398620-48398639 Msa0074160:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_2:48398452-48398471 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_2:48398461-48398480 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_2:48398460-48398479 Msa0074160:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_2:48398461-48398480 Msa0074160:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_2:48398452-48398471 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_2:48398461-48398480 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_2:48398460-48398479 Msa0074160:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_2:48398461-48398480 Msa0074160:intron 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG + chr1_2:48398619-48398638 Msa0074160:intron 25.0%
!! TTTTGTCTTTTGTGTGTTAA+AGG + chr1_2:48399337-48399356 Msa0074160:intron 25.0%
!! ACTTACATCTAAAGAACTTT+TGG - chr1_2:48399478-48399497 None:intergenic 25.0%
! ATTAATGAACATTACTTCTG+TGG + chr1_2:48399498-48399517 Msa0074160:intron 25.0%
! TGTGGTAAACTTATTTATTG+TGG + chr1_2:48399516-48399535 Msa0074160:intron 25.0%
! GTGGTAAACTTATTTATTGT+GGG + chr1_2:48399517-48399536 Msa0074160:intron 25.0%
! ACTAAAAAAAATGCTAGAAG+TGG - chr1_2:48399909-48399928 None:intergenic 25.0%
!!! ACTTTTTGGTATATTGTACT+AGG + chr1_2:48399939-48399958 Msa0074160:intron 25.0%
!!! CTTTTTGGTATATTGTACTA+GGG + chr1_2:48399940-48399959 Msa0074160:intron 25.0%
! TCTTGATACAAAAAAATCAG+GGG + chr1_2:48400099-48400118 Msa0074160:CDS 25.0%
! TTGTTAGTATTCAAATCATG+TGG - chr1_2:48400367-48400386 None:intergenic 25.0%
! ACATGATTTGAATACTAACA+AGG + chr1_2:48400366-48400385 Msa0074160:CDS 25.0%
! TTGAAGATTCATATTTCACT+CGG + chr1_2:48400455-48400474 Msa0074160:CDS 25.0%
!! AGATTCAATAGTTAAGTTGT+TGG + chr1_2:48400921-48400940 Msa0074160:CDS 25.0%
!! TAAATGTTTTCTTTCCAATC+AGG + chr1_2:48401332-48401351 Msa0074160:intron 25.0%
!! TGGATTTTTCCTTAAAAATC+CGG + chr1_2:48401457-48401476 Msa0074160:intron 25.0%
! CATTAATTTAGTGCTTCTAT+AGG + chr1_2:48401664-48401683 Msa0074160:intron 25.0%
! TTATTCCTGTATATATGTTC+TGG + chr1_2:48401792-48401811 Msa0074160:intron 25.0%
! GATGTCTTTATGAAGTTATT+TGG + chr1_2:48401814-48401833 Msa0074160:intron 25.0%
!!! ACTTTAAAACTAGCCAATTA+AGG + chr1_2:48401952-48401971 Msa0074160:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_2:48402272-48402291 None:intergenic 25.0%
! TTTCAGATCATATTGGAAAT+AGG + chr1_2:48403100-48403119 Msa0074160:CDS 25.0%
! AATGATTCCAATTATTTCAG+TGG + chr1_2:48403264-48403283 Msa0074160:CDS 25.0%
! GTATTGAATAATGAAATAGG+GGG + chr1_2:48403303-48403322 Msa0074160:CDS 25.0%
! AACTTGATATTCTCATAACT+AGG - chr1_2:48403345-48403364 None:intergenic 25.0%
!!! ATCTTTTAACATTTTGAGAC+AGG - chr1_2:48403483-48403502 None:intergenic 25.0%
! ATAATTGTGACAGAATTTCA+GGG - chr1_2:48403591-48403610 None:intergenic 25.0%
! TCAGAAACTGATCATATAAA+AGG - chr1_2:48403936-48403955 None:intergenic 25.0%
!!! TCTATTTTTGCAGTTAAACT+GGG + chr1_2:48403973-48403992 Msa0074160:intron 25.0%
! AATTCTGAACAAACAATTTC+AGG - chr1_2:48404117-48404136 None:intergenic 25.0%
! AACTCTATTTGGTAAAAAGT+TGG - chr1_2:48404243-48404262 None:intergenic 25.0%
AATGAAGAATCTCGAAATGA+GGG - chr1_2:48395297-48395316 None:intergenic 30.0%
AAATGAAGAATCTCGAAATG+AGG - chr1_2:48395298-48395317 None:intergenic 30.0%
AAGTGAAATGAAAGTAACGA+GGG - chr1_2:48395321-48395340 None:intergenic 30.0%
AAAGTGAAATGAAAGTAACG+AGG - chr1_2:48395322-48395341 None:intergenic 30.0%
ATCTTCACATGTTGAAATCA+CGG - chr1_2:48395453-48395472 None:intergenic 30.0%
AAACCAGTCACAAAAAATGA+CGG - chr1_2:48395665-48395684 None:intergenic 30.0%
AAAACCCTAAAAACAAAGAG+AGG - chr1_2:48395850-48395869 None:intergenic 30.0%
! TATTGTGTAGCTTTTGTCAT+TGG + chr1_2:48395893-48395912 Msa0074160:intron 30.0%
TAATTTACCGTTGAATACTC+TGG + chr1_2:48396251-48396270 Msa0074160:intron 30.0%
AGATGAAAAAACCTATTTGG+TGG + chr1_2:48396427-48396446 Msa0074160:intron 30.0%
GATGAAAAAACCTATTTGGT+GGG + chr1_2:48396428-48396447 Msa0074160:intron 30.0%
! AAAAGCAAGAAAAGCATAAC+AGG + chr1_2:48396501-48396520 Msa0074160:intron 30.0%
! TTGGCATCATATAATGGAAA+TGG + chr1_2:48396576-48396595 Msa0074160:CDS 30.0%
! TATAATGGAAATGGCTCATA+AGG + chr1_2:48396585-48396604 Msa0074160:CDS 30.0%
TTAAAGCCTAAATCATCAGA+TGG + chr1_2:48396815-48396834 Msa0074160:CDS 30.0%
CCAACCTTCAAATGATAATT+AGG - chr1_2:48397287-48397306 None:intergenic 30.0%
CCTAATTATCATTTGAAGGT+TGG + chr1_2:48397284-48397303 Msa0074160:intron 30.0%
ATCATTTGAAGGTTGGAATT+TGG + chr1_2:48397291-48397310 Msa0074160:intron 30.0%
AAGTAACAACCCAATCAAAA+TGG - chr1_2:48397464-48397483 None:intergenic 30.0%
! TTTTCGTGATTTTGTGATGA+TGG + chr1_2:48397490-48397509 Msa0074160:intron 30.0%
! TTTCGTGATTTTGTGATGAT+GGG + chr1_2:48397491-48397510 Msa0074160:intron 30.0%
CTGGATTAAACTTTGTAGAA+TGG + chr1_2:48397657-48397676 Msa0074160:intron 30.0%
! CTCTTGTAAATCTACGATTT+TGG - chr1_2:48397736-48397755 None:intergenic 30.0%
AGGAAATAATTTAGTGGTTC+AGG - chr1_2:48397934-48397953 None:intergenic 30.0%
AATTAAGTAGCAGATTGCAT+GGG - chr1_2:48397989-48398008 None:intergenic 30.0%
TAATTAAGTAGCAGATTGCA+TGG - chr1_2:48397990-48398009 None:intergenic 30.0%
CTACTACTATGGTCTATATT+AGG - chr1_2:48398045-48398064 None:intergenic 30.0%
CTAATATAGACCATAGTAGT+AGG + chr1_2:48398043-48398062 Msa0074160:intron 30.0%
TGTTTGTATCTACATGATCA+TGG + chr1_2:48398121-48398140 Msa0074160:intron 30.0%
GACCATATTGTGTATTCATT+TGG + chr1_2:48398293-48398312 Msa0074160:intron 30.0%
TGCCAAATGAATACACAATA+TGG - chr1_2:48398298-48398317 None:intergenic 30.0%
! TCAATGTCTTTTTACTTCTC+TGG + chr1_2:48398341-48398360 Msa0074160:intron 30.0%
TGAAAGCAATCAAACTTAAG+AGG - chr1_2:48398375-48398394 None:intergenic 30.0%
ATCATGCATAACATAGTCTT+AGG + chr1_2:48398421-48398440 Msa0074160:intron 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_2:48398517-48398536 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_2:48398521-48398540 Msa0074160:intron 30.0%
AAATTATGGAGAAACCTAAG+AGG - chr1_2:48398438-48398457 None:intergenic 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_2:48398517-48398536 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_2:48398521-48398540 Msa0074160:intron 30.0%
AAATTATGGAGAAACCTAAG+AGG - chr1_2:48398438-48398457 None:intergenic 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_2:48398517-48398536 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_2:48398521-48398540 Msa0074160:intron 30.0%
CATTAGTATGTCAAACTAGA+AGG + chr1_2:48399078-48399097 Msa0074160:intron 30.0%
ATCATGCATAACATAGTCTT+AGG + chr1_2:48398421-48398440 Msa0074160:intron 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_2:48398517-48398536 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_2:48398521-48398540 Msa0074160:intron 30.0%
! TTTTGTGTGTTAAAGGAGTA+GGG + chr1_2:48399344-48399363 Msa0074160:intron 30.0%
AATAATTTGAATCGTCCTTC+AGG + chr1_2:48399390-48399409 Msa0074160:CDS 30.0%
ATAATTTGAATCGTCCTTCA+GGG + chr1_2:48399391-48399410 Msa0074160:CDS 30.0%
AAGAACCAGATTAAAGAATC+CGG + chr1_2:48399635-48399654 Msa0074160:intron 30.0%
ATAAATCCATTACCAAGAGT+TGG - chr1_2:48399702-48399721 None:intergenic 30.0%
!!! TCGCATTAATTTGTTTTGCA+TGG + chr1_2:48399737-48399756 Msa0074160:intron 30.0%
AACTGCCATAAAAATATAGC+TGG - chr1_2:48399860-48399879 None:intergenic 30.0%
!! GAAGTGGATTTGTTATTTCA+TGG - chr1_2:48399893-48399912 None:intergenic 30.0%
TGTATCAAGAATAGACCTTT+CGG - chr1_2:48400089-48400108 None:intergenic 30.0%
TGAGTCAATTGTTATCAATG+AGG + chr1_2:48400216-48400235 Msa0074160:CDS 30.0%
TGAAGATTCATATTTCACTC+GGG + chr1_2:48400456-48400475 Msa0074160:CDS 30.0%
CACAATTATATCTTCCCAAA+AGG - chr1_2:48400584-48400603 None:intergenic 30.0%
!! CTTTTGGGAAGATATAATTG+TGG + chr1_2:48400582-48400601 Msa0074160:CDS 30.0%
AATTCGTAACCAGAATCATT+CGG + chr1_2:48400738-48400757 Msa0074160:CDS 30.0%
GGTTCAGTAAAATATTCAGA+AGG - chr1_2:48400769-48400788 None:intergenic 30.0%
! TGAATATTTTACTGAACCCT+TGG + chr1_2:48400771-48400790 Msa0074160:CDS 30.0%
! GAATATTTTACTGAACCCTT+GGG + chr1_2:48400772-48400791 Msa0074160:CDS 30.0%
! AATATTTTACTGAACCCTTG+GGG + chr1_2:48400773-48400792 Msa0074160:CDS 30.0%
! ATTCAAGGAATCATTTTGTC+TGG - chr1_2:48401031-48401050 None:intergenic 30.0%
!!! CAAATCAGAGGTTTTATTCA+AGG - chr1_2:48401046-48401065 None:intergenic 30.0%
GTGCTATCAGATAAATTTGA+TGG + chr1_2:48401186-48401205 Msa0074160:CDS 30.0%
AACTCACTGGAAAATTTAGA+GGG - chr1_2:48401228-48401247 None:intergenic 30.0%
AAACTCACTGGAAAATTTAG+AGG - chr1_2:48401229-48401248 None:intergenic 30.0%
GTTACTCATTAACACACATT+GGG - chr1_2:48401279-48401298 None:intergenic 30.0%
TGTTACTCATTAACACACAT+TGG - chr1_2:48401280-48401299 None:intergenic 30.0%
AAGTACTTCATCTTTGAGTA+TGG + chr1_2:48401305-48401324 Msa0074160:intron 30.0%
TAAGTGAACGAGAAAGATAA+AGG - chr1_2:48401497-48401516 None:intergenic 30.0%
TTTCTCGTTCACTTAATTGA+TGG + chr1_2:48401502-48401521 Msa0074160:intron 30.0%
CACTTAATTGATGGAGTAAA+TGG + chr1_2:48401511-48401530 Msa0074160:intron 30.0%
AAGTAGCTATGACATAATGT+TGG + chr1_2:48401635-48401654 Msa0074160:intron 30.0%
ATCAACAATGTTGCAATCTT+TGG + chr1_2:48401848-48401867 Msa0074160:intron 30.0%
!! AGTTGCACTTTTTAATAGGT+TGG - chr1_2:48401995-48402014 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_2:48402156-48402175 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_2:48402157-48402176 Msa0074160:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_2:48402215-48402234 None:intergenic 30.0%
! TTTTCGAATGGTTTCTCTAA+TGG - chr1_2:48402225-48402244 None:intergenic 30.0%
AACCATTCGAAAAGATTTAG+AGG + chr1_2:48402232-48402251 Msa0074160:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_2:48402276-48402295 Msa0074160:intron 30.0%
AACATTTCATGATACACCAA+GGG - chr1_2:48402470-48402489 None:intergenic 30.0%
AAACATTTCATGATACACCA+AGG - chr1_2:48402471-48402490 None:intergenic 30.0%
! AATAGTACACCTTTTAACCT+GGG + chr1_2:48402982-48403001 Msa0074160:CDS 30.0%
TCAAGACTTTCAGATCATAT+TGG + chr1_2:48403093-48403112 Msa0074160:CDS 30.0%
ATGCTTATAGAACTAATTCG+AGG + chr1_2:48403139-48403158 Msa0074160:CDS 30.0%
CAGTTCAGTAGTAATATTCT+TGG + chr1_2:48403216-48403235 Msa0074160:CDS 30.0%
ATTAGTTGTTCAGTCAATTC+AGG - chr1_2:48403374-48403393 None:intergenic 30.0%
GACTGAACAACTAATATTCA+TGG + chr1_2:48403379-48403398 Msa0074160:exon 30.0%
TGAACAACTAATATTCATGG+TGG + chr1_2:48403382-48403401 Msa0074160:three_prime_UTR 30.0%
TGTTAAAAGATCCCTTTATG+TGG + chr1_2:48403492-48403511 Msa0074160:three_prime_UTR 30.0%
! GCTGAAATTGTGTTTTACTA+TGG + chr1_2:48403514-48403533 Msa0074160:three_prime_UTR 30.0%
! AGACTTGTTTCAAATCTGTT+TGG + chr1_2:48403555-48403574 Msa0074160:three_prime_UTR 30.0%
CATAATTGTGACAGAATTTC+AGG - chr1_2:48403592-48403611 None:intergenic 30.0%
! TTCAAAAGGAAAAGTACAAG+TGG - chr1_2:48403870-48403889 None:intergenic 30.0%
ATAAACATGGAGCAATCTTA+GGG - chr1_2:48403900-48403919 None:intergenic 30.0%
TATAAACATGGAGCAATCTT+AGG - chr1_2:48403901-48403920 None:intergenic 30.0%
!!! CTCTATTTTTGCAGTTAAAC+TGG + chr1_2:48403972-48403991 Msa0074160:intron 30.0%
GAAACTACAATCGAAGTTAT+AGG + chr1_2:48404023-48404042 Msa0074160:three_prime_UTR 30.0%
! TCAGAATTTGTTTCCAAACT+CGG + chr1_2:48404129-48404148 Msa0074160:three_prime_UTR 30.0%
CAAATATGACTTTAGTACTG+TGG + chr1_2:48404183-48404202 Msa0074160:three_prime_UTR 30.0%
!! GGTATGTACAAAGTTAGTTT+TGG + chr1_2:48404204-48404223 Msa0074160:three_prime_UTR 30.0%
GTATACGTTGTCAGAGTTAA+CGG + chr1_2:48395529-48395548 Msa0074160:intron 35.0%
ACGGAATGTTCATTTCTGTT+AGG + chr1_2:48395548-48395567 Msa0074160:intron 35.0%
CGGAATGTTCATTTCTGTTA+GGG + chr1_2:48395549-48395568 Msa0074160:intron 35.0%
! AATGTTGATGTGCTGTGTTT+TGG + chr1_2:48395757-48395776 Msa0074160:intron 35.0%
CTGAGTAGGTTTATCATTTC+TGG + chr1_2:48395810-48395829 Msa0074160:intron 35.0%
TGAATACCGTGGAGAAAAAT+GGG + chr1_2:48396064-48396083 Msa0074160:exon 35.0%
! CATCAAACCAGAGTATTCAA+CGG - chr1_2:48396261-48396280 None:intergenic 35.0%
! TCTTTTCACAGATCTGTGTA+TGG + chr1_2:48396551-48396570 Msa0074160:intron 35.0%
!! ATGGTGTTGGCATCATATAA+TGG + chr1_2:48396570-48396589 Msa0074160:CDS 35.0%
GTTCTTTGTCATAAGGTGAA+CGG - chr1_2:48396639-48396658 None:intergenic 35.0%
ACAATGCGTTCTTTGTCATA+AGG - chr1_2:48396646-48396665 None:intergenic 35.0%
TTATGACAAAGAACGCATTG+TGG + chr1_2:48396645-48396664 Msa0074160:CDS 35.0%
TTCCTTCCATCTGATGATTT+AGG - chr1_2:48396824-48396843 None:intergenic 35.0%
TTCCTACTTGAACAACACTT+TGG - chr1_2:48397225-48397244 None:intergenic 35.0%
! GGAATTTGGAATTTGTTCCT+TGG + chr1_2:48397305-48397324 Msa0074160:intron 35.0%
TACTAGAAGGTAGATCATTG+AGG + chr1_2:48397428-48397447 Msa0074160:intron 35.0%
!! GGTGGTTATTTTCATTTGCA+GGG + chr1_2:48397512-48397531 Msa0074160:intron 35.0%
ACATAGTAGCACAAAGATGT+AGG - chr1_2:48397631-48397650 None:intergenic 35.0%
! TGTGCTACTATGTTAGAAAC+TGG + chr1_2:48397638-48397657 Msa0074160:intron 35.0%
ACTGGTACCAGAATTATTTC+CGG - chr1_2:48397702-48397721 None:intergenic 35.0%
GAAATAATTCTGGTACCAGT+AGG + chr1_2:48397702-48397721 Msa0074160:intron 35.0%
AAATGAGTAGTCCTACAAGT+CGG - chr1_2:48397821-48397840 None:intergenic 35.0%
! CTTGTAGGACTACTCATTTT+CGG + chr1_2:48397822-48397841 Msa0074160:intron 35.0%
ATGAGTTAGGGTGAAGAAAA+AGG - chr1_2:48397848-48397867 None:intergenic 35.0%
ACAAAACAAAAAGGGAATCC+AGG - chr1_2:48397909-48397928 None:intergenic 35.0%
TTCAGGCGACAAAACAAAAA+GGG - chr1_2:48397917-48397936 None:intergenic 35.0%
ATTTCCTTACGTACATCACT+AGG + chr1_2:48397947-48397966 Msa0074160:intron 35.0%
TATATTAGGATACAGCGGAA+AGG - chr1_2:48398031-48398050 None:intergenic 35.0%
TGGTCTATATTAGGATACAG+CGG - chr1_2:48398036-48398055 None:intergenic 35.0%
TAGCATTTGCAAGGTATGAT+TGG + chr1_2:48398182-48398201 Msa0074160:intron 35.0%
! TCTTTTTACTTCTCTGGTGT+TGG + chr1_2:48398347-48398366 Msa0074160:intron 35.0%
GACTATGTTATGCATGATGT+AGG - chr1_2:48398419-48398438 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_2:48398471-48398490 Msa0074160:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_2:48398529-48398548 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_2:48398560-48398579 None:intergenic 35.0%
!!! TTGTAGTTTTGGGTATGTCA+TGG + chr1_2:48398630-48398649 Msa0074160:intron 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_2:48398471-48398490 Msa0074160:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_2:48398529-48398548 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_2:48398560-48398579 None:intergenic 35.0%
!!! TTGTAGTTTTGGGTATGTCA+TGG + chr1_2:48398630-48398649 Msa0074160:intron 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_2:48398471-48398490 Msa0074160:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_2:48398529-48398548 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_2:48398560-48398579 None:intergenic 35.0%
AGTATGTCAAACTAGAAGGA+AGG + chr1_2:48399082-48399101 Msa0074160:intron 35.0%
GACTATGTTATGCATGATGT+AGG - chr1_2:48398419-48398438 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_2:48398471-48398490 Msa0074160:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_2:48398529-48398548 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_2:48398560-48398579 None:intergenic 35.0%
! CTTTTGTGTGTTAAAGGAGT+AGG + chr1_2:48399343-48399362 Msa0074160:intron 35.0%
! TTGTAGCACCAATGATTTGT+AGG - chr1_2:48399371-48399390 None:intergenic 35.0%
! GATACATGTTTAGGATCATC+TGG - chr1_2:48399435-48399454 None:intergenic 35.0%
! AGAACTTTTGGACACTACTT+TGG - chr1_2:48399466-48399485 None:intergenic 35.0%
TTGAACCGGATTCTTTAATC+TGG - chr1_2:48399643-48399662 None:intergenic 35.0%
!!! ATTTGTTTTGCATGGCAGTA+CGG + chr1_2:48399745-48399764 Msa0074160:intron 35.0%
!! GTGGATTTGTTATTTCATGG+TGG - chr1_2:48399890-48399909 None:intergenic 35.0%
GAAGATGAACTAGTATCCTT+TGG - chr1_2:48399989-48400008 None:intergenic 35.0%
! TGAAGGTACAGATACACTAT+TGG - chr1_2:48400155-48400174 None:intergenic 35.0%
TGATGTTTGTTCAACTCTGA+AGG - chr1_2:48400172-48400191 None:intergenic 35.0%
GAGTTGAACAAACATCACAT+TGG + chr1_2:48400175-48400194 Msa0074160:CDS 35.0%
TTGAACAAACATCACATTGG+TGG + chr1_2:48400178-48400197 Msa0074160:CDS 35.0%
AGTATTCAAATCATGTGGTG+CGG - chr1_2:48400362-48400381 None:intergenic 35.0%
TTCATATTTCACTCGGGATT+CGG + chr1_2:48400462-48400481 Msa0074160:CDS 35.0%
ATTATATCTTCCCAAAAGGC+TGG - chr1_2:48400580-48400599 None:intergenic 35.0%
ATTCGTAACCAGAATCATTC+GGG + chr1_2:48400739-48400758 Msa0074160:CDS 35.0%
! ATATTTTACTGAACCCTTGG+GGG + chr1_2:48400774-48400793 Msa0074160:CDS 35.0%
!! TGGTTCAGATGTTGATAACA+AGG + chr1_2:48400831-48400850 Msa0074160:CDS 35.0%
AAATGATTGCTGCAAATCAG+AGG - chr1_2:48401058-48401077 None:intergenic 35.0%
! TCTGATTTGCAGCAATCATT+TGG + chr1_2:48401057-48401076 Msa0074160:CDS 35.0%
! CTGATTTGCAGCAATCATTT+GGG + chr1_2:48401058-48401077 Msa0074160:CDS 35.0%
! TGATTTGCAGCAATCATTTG+GGG + chr1_2:48401059-48401078 Msa0074160:CDS 35.0%
ATAGCACAGAATTGCTTGAT+GGG - chr1_2:48401173-48401192 None:intergenic 35.0%
ATTTGATGGAAGTCTGTCTT+TGG + chr1_2:48401200-48401219 Msa0074160:CDS 35.0%
TACTTCATCTTTGAGTATGG+TGG + chr1_2:48401308-48401327 Msa0074160:intron 35.0%
GACAATACAGAAAACCTGAT+TGG - chr1_2:48401349-48401368 None:intergenic 35.0%
ATCCTGCTTGCTCAATTAAT+TGG + chr1_2:48401437-48401456 Msa0074160:intron 35.0%
ATCCAATTAATTGAGCAAGC+AGG - chr1_2:48401442-48401461 None:intergenic 35.0%
! AGAGATTCTCCGGATTTTTA+AGG - chr1_2:48401469-48401488 None:intergenic 35.0%
TGAAACACATTCATAGTCGA+TGG + chr1_2:48401547-48401566 Msa0074160:intron 35.0%
! TTCTGTCATTTGCTTGTGAA+TGG + chr1_2:48401715-48401734 Msa0074160:intron 35.0%
! CTTGTGAATGGAAAGTATGA+TGG + chr1_2:48401727-48401746 Msa0074160:intron 35.0%
GACATCCAGAACATATATAC+AGG - chr1_2:48401800-48401819 None:intergenic 35.0%
TTCTACTATAGGTGCTAAGT+TGG + chr1_2:48402079-48402098 Msa0074160:intron 35.0%
!! GTGCTAAGTTGGTAGAAAAT+AGG + chr1_2:48402090-48402109 Msa0074160:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_2:48402099-48402118 Msa0074160:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_2:48402104-48402123 Msa0074160:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr1_2:48402160-48402179 Msa0074160:intron 35.0%
! GACCTCTAAATCTTTTCGAA+TGG - chr1_2:48402237-48402256 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_2:48402244-48402263 Msa0074160:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_2:48402256-48402275 Msa0074160:intron 35.0%
ATGCATCTTTAATAAAGCGG+AGG + chr1_2:48402415-48402434 Msa0074160:intron 35.0%
!! ATAGTAGAAGTTTTGTCCCT+TGG + chr1_2:48402451-48402470 Msa0074160:intron 35.0%
TTTCCTCTGTCTTTCATTAG+TGG + chr1_2:48402618-48402637 Msa0074160:intron 35.0%
GAACAGAGTTGTAATAGTTC+TGG + chr1_2:48402718-48402737 Msa0074160:CDS 35.0%
! AGTTCTGGTATAACTCTTCA+TGG + chr1_2:48402733-48402752 Msa0074160:intron 35.0%
ATCCTGCTGATATTTACAGA+TGG - chr1_2:48402895-48402914 None:intergenic 35.0%
TCTGTAAATATCAGCAGGAT+AGG + chr1_2:48402895-48402914 Msa0074160:CDS 35.0%
TGTTGAGTTCAAGAATCCTA+TGG + chr1_2:48402921-48402940 Msa0074160:CDS 35.0%
TATGGTATTTGACCCTAGTA+GGG + chr1_2:48402939-48402958 Msa0074160:CDS 35.0%
! GAATAGTACACCTTTTAACC+TGG + chr1_2:48402981-48403000 Msa0074160:CDS 35.0%
! ATAGTACACCTTTTAACCTG+GGG + chr1_2:48402983-48403002 Msa0074160:CDS 35.0%
GTTCTATAAGCATCACTTTG+AGG - chr1_2:48403132-48403151 None:intergenic 35.0%
GAATGCAGTTGTTCAGAAAA+TGG - chr1_2:48403192-48403211 None:intergenic 35.0%
TTCTTGGTTCAAATAACCAG+TGG + chr1_2:48403232-48403251 Msa0074160:CDS 35.0%
TCTTGGTTCAAATAACCAGT+GGG + chr1_2:48403233-48403252 Msa0074160:CDS 35.0%
TCAATACTTCAGACATAGAC+AGG - chr1_2:48403290-48403309 None:intergenic 35.0%
TTTCCCTTCAATGCACTAAT+AGG + chr1_2:48403430-48403449 Msa0074160:three_prime_UTR 35.0%
CACAATTTCAGCCACATAAA+GGG - chr1_2:48403506-48403525 None:intergenic 35.0%
ACACAATTTCAGCCACATAA+AGG - chr1_2:48403507-48403526 None:intergenic 35.0%
! CAGATTTGAAACAAGTCTCA+AGG - chr1_2:48403553-48403572 None:intergenic 35.0%
GTCACAATTATGCCATCAAA+TGG + chr1_2:48403600-48403619 Msa0074160:three_prime_UTR 35.0%
TTATGCCATCAAATGGTCAA+CGG + chr1_2:48403607-48403626 Msa0074160:three_prime_UTR 35.0%
TTACAGTTGTCAGACATAAC+TGG + chr1_2:48403694-48403713 Msa0074160:three_prime_UTR 35.0%
!! AACGGTGTCAACTTTTTCTA+TGG + chr1_2:48403719-48403738 Msa0074160:three_prime_UTR 35.0%
!! ACGGTGTCAACTTTTTCTAT+GGG + chr1_2:48403720-48403739 Msa0074160:three_prime_UTR 35.0%
! TTTTCTATGGGGTAAATGTC+AGG + chr1_2:48403732-48403751 Msa0074160:three_prime_UTR 35.0%
TGGGAAATTCATGCTATGAA+TGG + chr1_2:48404055-48404074 Msa0074160:three_prime_UTR 35.0%
CATGCTATGAATGGTGAAAT+AGG + chr1_2:48404064-48404083 Msa0074160:three_prime_UTR 35.0%
GAATAACAGAATACCGAGTT+TGG - chr1_2:48404145-48404164 None:intergenic 35.0%
AGAAAAGCTTACAGTGAGAG+CGG - chr1_2:48395261-48395280 None:intergenic 40.0%
GAATCTCGAAATGAGGGTTA+GGG - chr1_2:48395291-48395310 None:intergenic 40.0%
AGAATCTCGAAATGAGGGTT+AGG - chr1_2:48395292-48395311 None:intergenic 40.0%
!!! TTGCCGTCATTTTTTGTGAC+TGG + chr1_2:48395659-48395678 Msa0074160:intron 40.0%
TTTGGACCAATGAGTTTCAC+TGG + chr1_2:48395775-48395794 Msa0074160:intron 40.0%
CCATAACCAGTGAAACTCAT+TGG - chr1_2:48395784-48395803 None:intergenic 40.0%
! CCAATGAGTTTCACTGGTTA+TGG + chr1_2:48395781-48395800 Msa0074160:intron 40.0%
! TGTGTAGCTTTTGTCATTGG+TGG + chr1_2:48395896-48395915 Msa0074160:intron 40.0%
TATTGTGTAGCTGAATACCG+TGG + chr1_2:48396053-48396072 Msa0074160:intron 40.0%
CTGAATACCGTGGAGAAAAA+TGG + chr1_2:48396063-48396082 Msa0074160:exon 40.0%
TCCATCTCTTCGGTACATAT+CGG - chr1_2:48396112-48396131 None:intergenic 40.0%
ACAAAAGCAACCCACCAAAT+AGG - chr1_2:48396441-48396460 None:intergenic 40.0%
AACTGTCGAAGGTTGAGTTA+TGG + chr1_2:48396679-48396698 Msa0074160:intron 40.0%
AGCCTAAATCATCAGATGGA+AGG + chr1_2:48396819-48396838 Msa0074160:CDS 40.0%
AACTCACATCTTCATCTGCA+AGG - chr1_2:48396910-48396929 None:intergenic 40.0%
TGTTGCTAGATGTAACTGTG+TGG + chr1_2:48396954-48396973 Msa0074160:intron 40.0%
! GTACTTTGGAAGGTATGGAA+AGG + chr1_2:48397097-48397116 Msa0074160:CDS 40.0%
!! CACCAAAGTGTTGTTCAAGT+AGG + chr1_2:48397220-48397239 Msa0074160:intron 40.0%
GAAGGTAGATCATTGAGGTA+AGG + chr1_2:48397433-48397452 Msa0074160:intron 40.0%
!! GGGTGGTTATTTTCATTTGC+AGG + chr1_2:48397511-48397530 Msa0074160:intron 40.0%
!! TTCATTTGCAGGGCTTGTTT+TGG + chr1_2:48397522-48397541 Msa0074160:intron 40.0%
CCATGCATGACAATACTTTG+TGG - chr1_2:48397550-48397569 None:intergenic 40.0%
!! CCACAAAGTATTGTCATGCA+TGG + chr1_2:48397547-48397566 Msa0074160:CDS 40.0%
GTTCAGGCGACAAAACAAAA+AGG - chr1_2:48397918-48397937 None:intergenic 40.0%
ATACAGCGGAAAGGAAAACA+GGG - chr1_2:48398022-48398041 None:intergenic 40.0%
ATGTGAGGAACCTACTACTA+TGG - chr1_2:48398056-48398075 None:intergenic 40.0%
AAACAGTCTCTATTGCTGCA+AGG - chr1_2:48398106-48398125 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_2:48398513-48398532 None:intergenic 40.0%
TAAGAGGTCATACAGAAGGA+AGG - chr1_2:48398672-48398691 None:intergenic 40.0%
TTCCTTCTGTATGACCTCTT+AGG + chr1_2:48398512-48398531 Msa0074160:intron 40.0%
AACCTAAGAGGTCATACAGA+AGG - chr1_2:48398676-48398695 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_2:48398513-48398532 None:intergenic 40.0%
GAGAAACCTAAGAGGTCATA+CGG - chr1_2:48398680-48398699 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_2:48398513-48398532 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_2:48398513-48398532 None:intergenic 40.0%
AGTAGGGTCCTACAAATCAT+TGG + chr1_2:48399360-48399379 Msa0074160:CDS 40.0%
! ACATGTTTAGGATCATCTGG+TGG - chr1_2:48399432-48399451 None:intergenic 40.0%
GTGGCTGATGATACATGTTT+AGG - chr1_2:48399444-48399463 None:intergenic 40.0%
! ACTTTTGGACACTACTTTGG+TGG - chr1_2:48399463-48399482 None:intergenic 40.0%
AAAGAATCCGGTTCAAGCAA+TGG + chr1_2:48399647-48399666 Msa0074160:CDS 40.0%
!!! TAGTGTGAACGCTGACTTTT+TGG + chr1_2:48399925-48399944 Msa0074160:intron 40.0%
TGGTATATTGTACTAGGGCA+AGG + chr1_2:48399945-48399964 Msa0074160:intron 40.0%
AGGTACAGATACACTATTGG+TGG - chr1_2:48400152-48400171 None:intergenic 40.0%
GTTACTGTGACGAAACTTTC+TGG + chr1_2:48400238-48400257 Msa0074160:CDS 40.0%
! CTAACAAGGCAGTTTCAAGT+CGG + chr1_2:48400380-48400399 Msa0074160:CDS 40.0%
! TAACAAGGCAGTTTCAAGTC+GGG + chr1_2:48400381-48400400 Msa0074160:CDS 40.0%
ATGCTTCCCTAAAGAGGAAT+CGG - chr1_2:48400515-48400534 None:intergenic 40.0%
ATGCAAATGCTTCCCTAAAG+AGG - chr1_2:48400521-48400540 None:intergenic 40.0%
GACTGTGATCAACAACAACA+CGG + chr1_2:48400622-48400641 Msa0074160:CDS 40.0%
ACAATGAGGTGAATAATGCC+TGG - chr1_2:48400671-48400690 None:intergenic 40.0%
! CTTAGATTCTGAGGACAATG+AGG - chr1_2:48400685-48400704 None:intergenic 40.0%
!! CTTGATTGGCTTAGATTCTG+AGG - chr1_2:48400694-48400713 None:intergenic 40.0%
! GATTTTCCTGCTTCAGATGA+TGG - chr1_2:48400717-48400736 None:intergenic 40.0%
TTCGTAACCAGAATCATTCG+GGG + chr1_2:48400740-48400759 Msa0074160:CDS 40.0%
AACAAGGTTTCTTCAGACGT+CGG + chr1_2:48400847-48400866 Msa0074160:CDS 40.0%
!! TGTCTTTGGAACTAGATGCA+TGG + chr1_2:48400896-48400915 Msa0074160:CDS 40.0%
!! GTCTTTGGAACTAGATGCAT+GGG + chr1_2:48400897-48400916 Msa0074160:CDS 40.0%
TCCAAGACAATAATCAGTCC+AGG + chr1_2:48400995-48401014 Msa0074160:CDS 40.0%
ACCTGGACTGATTATTGTCT+TGG - chr1_2:48400999-48401018 None:intergenic 40.0%
! GGAATCATTTTGTCTGGCAA+AGG - chr1_2:48401025-48401044 None:intergenic 40.0%
TTGCTGGACATGATCCTAAA+GGG + chr1_2:48401082-48401101 Msa0074160:CDS 40.0%
CCAGATGCATAATTCCCTTT+AGG - chr1_2:48401099-48401118 None:intergenic 40.0%
CCTAAAGGGAATTATGCATC+TGG + chr1_2:48401096-48401115 Msa0074160:CDS 40.0%
AAAGGGAATTATGCATCTGG+TGG + chr1_2:48401099-48401118 Msa0074160:CDS 40.0%
TATGCATCTGGTGGTTGTAA+TGG + chr1_2:48401108-48401127 Msa0074160:CDS 40.0%
GATAGCACAGAATTGCTTGA+TGG - chr1_2:48401174-48401193 None:intergenic 40.0%
! TCATGATGCCAGTTTTCTTG+TGG + chr1_2:48401413-48401432 Msa0074160:intron 40.0%
AAAGGTGAGAAGAGATTCTC+CGG - chr1_2:48401479-48401498 None:intergenic 40.0%
!! TGTGCCTGAACTTTAGCTTT+AGG + chr1_2:48401906-48401925 Msa0074160:intron 40.0%
!! GTGCCTGAACTTTAGCTTTA+GGG + chr1_2:48401907-48401926 Msa0074160:intron 40.0%
TCACCCTAAAGCTAAAGTTC+AGG - chr1_2:48401913-48401932 None:intergenic 40.0%
GTACAGTTGAGGTCCTTAAT+TGG - chr1_2:48401968-48401987 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_2:48402147-48402166 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_2:48402185-48402204 Msa0074160:intron 40.0%
ATAAAGCGGAGGTTCTTAGT+TGG + chr1_2:48402426-48402445 Msa0074160:intron 40.0%
ACTTGATATGTCACAGACAC+AGG - chr1_2:48402522-48402541 None:intergenic 40.0%
TTGCCACTAATGAAAGACAG+AGG - chr1_2:48402624-48402643 None:intergenic 40.0%
CTGCTGATATTTACAGATGG+AGG - chr1_2:48402892-48402911 None:intergenic 40.0%
CTCCATCTGTAAATATCAGC+AGG + chr1_2:48402890-48402909 Msa0074160:CDS 40.0%
CTACTAGGGTCAAATACCAT+AGG - chr1_2:48402940-48402959 None:intergenic 40.0%
CTATGGTATTTGACCCTAGT+AGG + chr1_2:48402938-48402957 Msa0074160:CDS 40.0%
ATGGTATTTGACCCTAGTAG+GGG + chr1_2:48402940-48402959 Msa0074160:CDS 40.0%
TCTTCATTGCGACTGAATTG+AGG - chr1_2:48403021-48403040 None:intergenic 40.0%
CTTGGTTCAAATAACCAGTG+GGG + chr1_2:48403234-48403253 Msa0074160:CDS 40.0%
AGACAGGCCACTGAAATAAT+TGG - chr1_2:48403274-48403293 None:intergenic 40.0%
GAGCCTATTAGTGCATTGAA+GGG - chr1_2:48403436-48403455 None:intergenic 40.0%
AGAGCCTATTAGTGCATTGA+AGG - chr1_2:48403437-48403456 None:intergenic 40.0%
! TGTGTTTTACTATGGCAGTC+TGG + chr1_2:48403522-48403541 Msa0074160:three_prime_UTR 40.0%
GAAGCTAAGCAAACAAGAGT+GGG - chr1_2:48403642-48403661 None:intergenic 40.0%
TGAAGCTAAGCAAACAAGAG+TGG - chr1_2:48403643-48403662 None:intergenic 40.0%
GTCTGACAACTGTAATGCAT+AGG - chr1_2:48403689-48403708 None:intergenic 40.0%
TGTCAGACATAACTGGCAAA+CGG + chr1_2:48403701-48403720 Msa0074160:three_prime_UTR 40.0%
!! CGGTGTCAACTTTTTCTATG+GGG + chr1_2:48403721-48403740 Msa0074160:three_prime_UTR 40.0%
TGTGTGCTAACATACATAGC+AGG + chr1_2:48403822-48403841 Msa0074160:intron 40.0%
TGCTAACATACATAGCAGGA+TGG + chr1_2:48403826-48403845 Msa0074160:intron 40.0%
CTTAGGGCAGAGATTTCAAA+AGG - chr1_2:48403884-48403903 None:intergenic 40.0%
ATCGAAGTTATAGGCCTTAC+TGG + chr1_2:48404032-48404051 Msa0074160:three_prime_UTR 40.0%
AAGTTATAGGCCTTACTGGT+GGG + chr1_2:48404036-48404055 Msa0074160:three_prime_UTR 40.0%
GTGAGTGAATGAGAGAGAGA+AGG - chr1_2:48395189-48395208 None:intergenic 45.0%
TCGAAATGAGGGTTAGGGTT+TGG - chr1_2:48395286-48395305 None:intergenic 45.0%
GGTTATGGTGCATTCTGAGT+AGG + chr1_2:48395796-48395815 Msa0074160:intron 45.0%
!! TTGTCGCCCATTTTTCTCCA+CGG - chr1_2:48396073-48396092 None:intergenic 45.0%
TGGAGAAAAATGGGCGACAA+AGG + chr1_2:48396073-48396092 Msa0074160:exon 45.0%
AGAAAAATGGGCGACAAAGG+AGG + chr1_2:48396076-48396095 Msa0074160:exon 45.0%
GAAAAATGGGCGACAAAGGA+GGG + chr1_2:48396077-48396096 Msa0074160:exon 45.0%
TCCGATATGTACCGAAGAGA+TGG + chr1_2:48396108-48396127 Msa0074160:CDS 45.0%
ATCAGTCAGGTCCATCTCTT+CGG - chr1_2:48396122-48396141 None:intergenic 45.0%
ACCTCATAGCCACATTTGCA+CGG - chr1_2:48396157-48396176 None:intergenic 45.0%
CACAGATCTGTGTATGGTGT+TGG + chr1_2:48396557-48396576 Msa0074160:intron 45.0%
GCTCATAAGGATGAAACCGA+GGG + chr1_2:48396598-48396617 Msa0074160:CDS 45.0%
TTTGTCATAAGGTGAACGGC+AGG - chr1_2:48396635-48396654 None:intergenic 45.0%
CAAAGAACGCATTGTGGCTA+TGG + chr1_2:48396651-48396670 Msa0074160:CDS 45.0%
CTTGCCTTGCTTTAGCAGAT+TGG + chr1_2:48396757-48396776 Msa0074160:intron 45.0%
GCAACCAATCTGCTAAAGCA+AGG - chr1_2:48396764-48396783 None:intergenic 45.0%
CGCAACCTCGTGTACATAAT+TGG + chr1_2:48396872-48396891 Msa0074160:CDS 45.0%
GCAGTCCAATTATGTACACG+AGG - chr1_2:48396880-48396899 None:intergenic 45.0%
TCTTCATCTGCAAGGTGAAG+AGG - chr1_2:48396902-48396921 None:intergenic 45.0%
GTAACTGTGTGGAGCATGAA+AGG + chr1_2:48396965-48396984 Msa0074160:intron 45.0%
!! CTTCAACGTAGGGAGTACTT+TGG + chr1_2:48397083-48397102 Msa0074160:CDS 45.0%
!! AACGTAGGGAGTACTTTGGA+AGG + chr1_2:48397087-48397106 Msa0074160:CDS 45.0%
!! AGGGAGTACTTTGGAAGGTA+TGG + chr1_2:48397092-48397111 Msa0074160:CDS 45.0%
GTCGATATCTCGTACAGCAA+CGG + chr1_2:48397130-48397149 Msa0074160:CDS 45.0%
TCGATATCTCGTACAGCAAC+GGG + chr1_2:48397131-48397150 Msa0074160:CDS 45.0%
CAACGAATGCAAAACAGCCA+AGG - chr1_2:48397325-48397344 None:intergenic 45.0%
! TGATTGGGTTGTTACTTGCG+AGG + chr1_2:48397467-48397486 Msa0074160:intron 45.0%
!!! CGTGATTTTGTGATGATGGG+TGG + chr1_2:48397494-48397513 Msa0074160:intron 45.0%
TCATGCATGGCTCAGAAATG+TGG + chr1_2:48397560-48397579 Msa0074160:CDS 45.0%
!! ATTTTGGCACTGCTTCCTAC+TGG - chr1_2:48397720-48397739 None:intergenic 45.0%
AGTCCTACAAGTCGGTAAAG+CGG - chr1_2:48397813-48397832 None:intergenic 45.0%
ACAAAAAGGGAATCCAGGCT+GGG - chr1_2:48397904-48397923 None:intergenic 45.0%
AACAAAAAGGGAATCCAGGC+TGG - chr1_2:48397905-48397924 None:intergenic 45.0%
TACGCCTAGTGATGTACGTA+AGG - chr1_2:48397954-48397973 None:intergenic 45.0%
GTACATCACTAGGCGTATCT+TGG + chr1_2:48397957-48397976 Msa0074160:intron 45.0%
GATACAGCGGAAAGGAAAAC+AGG - chr1_2:48398023-48398042 None:intergenic 45.0%
GGTCAAAAGACAACTAGCTG+AGG - chr1_2:48398277-48398296 None:intergenic 45.0%
TAAGAGGTCATACGGAAGGA+AGG - chr1_2:48398922-48398941 None:intergenic 45.0%
TTCCTTCCGTATGACCTCTT+AGG + chr1_2:48398921-48398940 Msa0074160:intron 45.0%
AACCTAAGAGGTCATACGGA+AGG - chr1_2:48398926-48398945 None:intergenic 45.0%
! TTTAGGATCATCTGGTGGTG+GGG - chr1_2:48399427-48399446 None:intergenic 45.0%
! GTTTAGGATCATCTGGTGGT+GGG - chr1_2:48399428-48399447 None:intergenic 45.0%
! TGTTTAGGATCATCTGGTGG+TGG - chr1_2:48399429-48399448 None:intergenic 45.0%
!! TGCAGGAAGTGCTGTTGAAT+TGG - chr1_2:48399678-48399697 None:intergenic 45.0%
! CAACCTAAAGCAGAAGCATG+CGG - chr1_2:48399832-48399851 None:intergenic 45.0%
TGTATCTGGCAGTCTTCCAA+AGG + chr1_2:48399970-48399989 Msa0074160:CDS 45.0%
AGTTCATCTTCATCACGTGC+TGG + chr1_2:48399998-48400017 Msa0074160:CDS 45.0%
! TTCATCACGTGCTGGTAATC+TGG + chr1_2:48400006-48400025 Msa0074160:CDS 45.0%
AACTTATTCAGCAGCTTCCG+TGG + chr1_2:48400282-48400301 Msa0074160:CDS 45.0%
ACTTATTCAGCAGCTTCCGT+GGG + chr1_2:48400283-48400302 Msa0074160:CDS 45.0%
! GTGCAACCTTTTCTTGACCA+AGG - chr1_2:48400309-48400328 None:intergenic 45.0%
AGGAAGCTTGTACTCACAGA+AGG - chr1_2:48400331-48400350 None:intergenic 45.0%
TTCTGTGAGTACAAGCTTCC+TGG + chr1_2:48400330-48400349 Msa0074160:CDS 45.0%
AAAGAGGAATCGGTCGAGTT+AGG - chr1_2:48400505-48400524 None:intergenic 45.0%
! AACTCGACCGATTCCTCTTT+AGG + chr1_2:48400505-48400524 Msa0074160:CDS 45.0%
! ACTCGACCGATTCCTCTTTA+GGG + chr1_2:48400506-48400525 Msa0074160:CDS 45.0%
! ATTCAACCACACCAGCCTTT+TGG + chr1_2:48400566-48400585 Msa0074160:CDS 45.0%
! TTCAACCACACCAGCCTTTT+GGG + chr1_2:48400567-48400586 Msa0074160:CDS 45.0%
GATCAACAACAACACGGCAA+AGG + chr1_2:48400628-48400647 Msa0074160:CDS 45.0%
ATGAGGTGAATAATGCCTGG+AGG - chr1_2:48400668-48400687 None:intergenic 45.0%
! GCTTCAGATGATGGCTTGAT+TGG - chr1_2:48400708-48400727 None:intergenic 45.0%
! ATCAAGCCATCATCTGAAGC+AGG + chr1_2:48400708-48400727 Msa0074160:CDS 45.0%
!! GGTGCTTTGAAGGATGTGTA+TGG - chr1_2:48400961-48400980 None:intergenic 45.0%
! TCTTGGATTTTGCGCAAAGC+AGG - chr1_2:48400982-48401001 None:intergenic 45.0%
TTGTCTGGCAAAGGAAAACC+TGG - chr1_2:48401016-48401035 None:intergenic 45.0%
GTTGCTGGACATGATCCTAA+AGG + chr1_2:48401081-48401100 Msa0074160:CDS 45.0%
! TGCTTGATGGGAAAGCGTAT+GGG - chr1_2:48401161-48401180 None:intergenic 45.0%
! TTGCTTGATGGGAAAGCGTA+TGG - chr1_2:48401162-48401181 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_2:48402146-48402165 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr1_2:48402169-48402188 Msa0074160:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_2:48402179-48402198 Msa0074160:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_2:48402325-48402344 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_2:48402326-48402345 None:intergenic 45.0%
ATGTCAGACAGAATACCACC+TGG + chr1_2:48402676-48402695 Msa0074160:CDS 45.0%
TGTCAGACAGAATACCACCT+GGG + chr1_2:48402677-48402696 Msa0074160:CDS 45.0%
TGTGGCTGCAAATGTTCAAC+TGG - chr1_2:48402862-48402881 None:intergenic 45.0%
AAGGTTTGCCCCAGGTTAAA+AGG - chr1_2:48402994-48403013 None:intergenic 45.0%
GCGACTGAATTGAGGAAGTA+AGG - chr1_2:48403013-48403032 None:intergenic 45.0%
CAAATAACCAGTGGGGAAGT+TGG + chr1_2:48403241-48403260 Msa0074160:CDS 45.0%
AATCATTCCAACTTCCCCAC+TGG - chr1_2:48403251-48403270 None:intergenic 45.0%
TGCACTAATAGGCTCTCAGA+TGG + chr1_2:48403441-48403460 Msa0074160:three_prime_UTR 45.0%
GATTGCCGTTGACCATTTGA+TGG - chr1_2:48403615-48403634 None:intergenic 45.0%
TAAGCAAACAAGAGTGGGTG+AGG - chr1_2:48403637-48403656 None:intergenic 45.0%
ACCATAATAACCGCCAAGGT+CGG - chr1_2:48403762-48403781 None:intergenic 45.0%
ACTCACCATAATAACCGCCA+AGG - chr1_2:48403766-48403785 None:intergenic 45.0%
GAAGTTATAGGCCTTACTGG+TGG + chr1_2:48404035-48404054 Msa0074160:three_prime_UTR 45.0%
GCATGAATTTCCCACCAGTA+AGG - chr1_2:48404049-48404068 None:intergenic 45.0%
GCTTCAGATGCTGATCAGTC+AGG - chr1_2:48396135-48396154 None:intergenic 50.0%
! CATCTGAAGCCGTGCAAATG+TGG + chr1_2:48396145-48396164 Msa0074160:CDS 50.0%
GGCTCATAAGGATGAAACCG+AGG + chr1_2:48396597-48396616 Msa0074160:CDS 50.0%
CTATGGCAGCTAACTGTCGA+AGG + chr1_2:48396668-48396687 Msa0074160:CDS 50.0%
GTCGAAGGTTGAGTTATGGC+TGG + chr1_2:48396683-48396702 Msa0074160:intron 50.0%
TCCACCAGCTACTTCAACGT+AGG + chr1_2:48397072-48397091 Msa0074160:intron 50.0%
CCACCAGCTACTTCAACGTA+GGG + chr1_2:48397073-48397092 Msa0074160:intron 50.0%
ACTCCCTACGTTGAAGTAGC+TGG - chr1_2:48397079-48397098 None:intergenic 50.0%
AGTCGGTAAAGCGGAGTGAA+GGG - chr1_2:48397804-48397823 None:intergenic 50.0%
AAGTCGGTAAAGCGGAGTGA+AGG - chr1_2:48397805-48397824 None:intergenic 50.0%
!! ACTCCGCTTTACCGACTTGT+AGG + chr1_2:48397807-48397826 Msa0074160:intron 50.0%
AAAAAGGGAATCCAGGCTGG+GGG - chr1_2:48397902-48397921 None:intergenic 50.0%
CAAAAAGGGAATCCAGGCTG+GGG - chr1_2:48397903-48397922 None:intergenic 50.0%
AGTCTCTATTGCTGCAAGGC+TGG - chr1_2:48398102-48398121 None:intergenic 50.0%
!! TTAGGATCATCTGGTGGTGG+GGG - chr1_2:48399426-48399445 None:intergenic 50.0%
CATTACCAAGAGTTGGCTGC+AGG - chr1_2:48399695-48399714 None:intergenic 50.0%
CTGCAGCCAACTCTTGGTAA+TGG + chr1_2:48399693-48399712 Msa0074160:intron 50.0%
!!! CAGTACGGCTGCTGTTTTCA+TGG + chr1_2:48399760-48399779 Msa0074160:intron 50.0%
!!! TACGGCTGCTGTTTTCATGG+TGG + chr1_2:48399763-48399782 Msa0074160:intron 50.0%
TAGCCGCATGCTTCTGCTTT+AGG + chr1_2:48399826-48399845 Msa0074160:intron 50.0%
ACTAGGGCAAGGTGTGTATC+TGG + chr1_2:48399956-48399975 Msa0074160:intron 50.0%
! ATTGATTCCCAAACCCTGCC+AGG + chr1_2:48400052-48400071 Msa0074160:CDS 50.0%
TTGATTCCCAAACCCTGCCA+GGG + chr1_2:48400053-48400072 Msa0074160:CDS 50.0%
! CTTTTCTTGACCAAGGCCCA+CGG - chr1_2:48400302-48400321 None:intergenic 50.0%
! GTTTCAAGTCGGGATGTGCA+TGG + chr1_2:48400391-48400410 Msa0074160:CDS 50.0%
GGATGTGCATGGCTCATGTT+CGG + chr1_2:48400402-48400421 Msa0074160:CDS 50.0%
ATCTTCCCAAAAGGCTGGTG+TGG - chr1_2:48400575-48400594 None:intergenic 50.0%
GCAGCGATAATTTAGCCTCC+AGG + chr1_2:48400650-48400669 Msa0074160:CDS 50.0%
AAGGCTTCCCCGAATGATTC+TGG - chr1_2:48400750-48400769 None:intergenic 50.0%
TTCTCTAATCCTGCCCCCAA+GGG - chr1_2:48400790-48400809 None:intergenic 50.0%
AGAGAAGACCGTGAAGAGTG+AGG + chr1_2:48400804-48400823 Msa0074160:CDS 50.0%
GAGAAGACCGTGAAGAGTGA+GGG + chr1_2:48400805-48400824 Msa0074160:CDS 50.0%
ACCAGTACCCTCACTCTTCA+CGG - chr1_2:48400815-48400834 None:intergenic 50.0%
! CAGCAATCATTTGGGGTTGC+TGG + chr1_2:48401066-48401085 Msa0074160:CDS 50.0%
GCAGGATGCCACAAGAAAAC+TGG - chr1_2:48401424-48401443 None:intergenic 50.0%
AGGTTGGCACTGTACAGTTG+AGG - chr1_2:48401979-48401998 None:intergenic 50.0%
ACTAAGTGGGGTAGGCTACA+TGG - chr1_2:48402313-48402332 None:intergenic 50.0%
ATGTAGCCTACCCCACTTAG+TGG + chr1_2:48402312-48402331 Msa0074160:intron 50.0%
TGTAGCCTACCCCACTTAGT+GGG + chr1_2:48402313-48402332 Msa0074160:intron 50.0%
CTTATCCCACTAAGTGGGGT+AGG - chr1_2:48402321-48402340 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG + chr1_2:48402319-48402338 Msa0074160:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_2:48402327-48402346 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_2:48402324-48402343 Msa0074160:intron 50.0%
CTCATGCTTCAAGTCCACCT+GGG + chr1_2:48402647-48402666 Msa0074160:CDS 50.0%
TCTGACATTGCAAACCCAGG+TGG - chr1_2:48402664-48402683 None:intergenic 50.0%
CTGTCTGACATTGCAAACCC+AGG - chr1_2:48402667-48402686 None:intergenic 50.0%
! ATACCACCTGGGTTTTCTCG+CGG + chr1_2:48402688-48402707 Msa0074160:CDS 50.0%
! ACAGATGGAGGAGCATACTG+TGG - chr1_2:48402880-48402899 None:intergenic 50.0%
TGACCCTAGTAGGGGAATAG+TGG + chr1_2:48402948-48402967 Msa0074160:CDS 50.0%
CCTCCACTATTCCCCTACTA+GGG - chr1_2:48402954-48402973 None:intergenic 50.0%
TCCTCCACTATTCCCCTACT+AGG - chr1_2:48402955-48402974 None:intergenic 50.0%
! GTAGGGGAATAGTGGAGGAA+AGG + chr1_2:48402956-48402975 Msa0074160:CDS 50.0%
TTAGCTTCACTGCCAAGCAC+TGG + chr1_2:48403654-48403673 Msa0074160:three_prime_UTR 50.0%
!! ACTGCCAAGCACTGGAATCT+GGG + chr1_2:48403662-48403681 Msa0074160:three_prime_UTR 50.0%
! CAAGTGGATTTCGCAAGTGC+TGG - chr1_2:48403854-48403873 None:intergenic 50.0%
TGAGAGCGGAGAAGAGAGAG+TGG - chr1_2:48395247-48395266 None:intergenic 55.0%
GCCGTGCAAATGTGGCTATG+AGG + chr1_2:48396153-48396172 Msa0074160:CDS 55.0%
TCATAAGGTGAACGGCAGGC+AGG - chr1_2:48396631-48396650 None:intergenic 55.0%
CCCTACGTTGAAGTAGCTGG+TGG - chr1_2:48397076-48397095 None:intergenic 55.0%
GGGGGTAAAACACTCCCTGA+AGG - chr1_2:48399408-48399427 None:intergenic 55.0%
GGCAGCTCCATTGCTTGAAC+CGG - chr1_2:48399657-48399676 None:intergenic 55.0%
CACTTCCTGCAGCCAACTCT+TGG + chr1_2:48399687-48399706 Msa0074160:CDS 55.0%
TGATTCCCAAACCCTGCCAG+GGG + chr1_2:48400054-48400073 Msa0074160:CDS 55.0%
CGTGGGCCTTGGTCAAGAAA+AGG + chr1_2:48400300-48400319 Msa0074160:CDS 55.0%
TTTACTGAACCCTTGGGGGC+AGG + chr1_2:48400778-48400797 Msa0074160:CDS 55.0%
CTTCTCTAATCCTGCCCCCA+AGG - chr1_2:48400791-48400810 None:intergenic 55.0%
! ACCGTGAAGAGTGAGGGTAC+TGG + chr1_2:48400811-48400830 Msa0074160:CDS 55.0%
GCGCAAAGCAGGTGCTTTGA+AGG - chr1_2:48400971-48400990 None:intergenic 55.0%
GCTCATGCTTCAAGTCCACC+TGG + chr1_2:48402646-48402665 Msa0074160:CDS 55.0%
! TACCACCTGGGTTTTCTCGC+GGG + chr1_2:48402689-48402708 Msa0074160:CDS 55.0%
CCCTAGTAGGGGAATAGTGG+AGG + chr1_2:48402951-48402970 Msa0074160:CDS 55.0%
GAGGAAGTAAGGTTTGCCCC+AGG - chr1_2:48403002-48403021 None:intergenic 55.0%
!! CACTGCCAAGCACTGGAATC+TGG + chr1_2:48403661-48403680 Msa0074160:three_prime_UTR 55.0%
AGGACCCAGATTCCAGTGCT+TGG - chr1_2:48403669-48403688 None:intergenic 55.0%
AATGTCAGGAGAGCCGACCT+TGG + chr1_2:48403746-48403765 Msa0074160:three_prime_UTR 55.0%
GCCGACCTTGGCGGTTATTA+TGG + chr1_2:48403758-48403777 Msa0074160:three_prime_UTR 55.0%
CGGAGAAGAGAGAGTGGTGG+TGG - chr1_2:48395241-48395260 None:intergenic 60.0%
GAGCGGAGAAGAGAGAGTGG+TGG - chr1_2:48395244-48395263 None:intergenic 60.0%
GTGAACGGCAGGCAGGACAA+CGG - chr1_2:48396624-48396643 None:intergenic 60.0%
AGCAACCCCTGGCAGGGTTT+GGG - chr1_2:48400062-48400081 None:intergenic 60.0%
AAGCAACCCCTGGCAGGGTT+TGG - chr1_2:48400063-48400082 None:intergenic 60.0%
! CTTTCGGTGCAAGCAACCCC+TGG - chr1_2:48400073-48400092 None:intergenic 60.0%
CAGGGGTTGCTTGCACCGAA+AGG + chr1_2:48400071-48400090 Msa0074160:CDS 60.0%
CATGTGGTGCGGTGATCTCC+AGG - chr1_2:48400351-48400370 None:intergenic 60.0%
ACTCTCCCGCGAGAAAACCC+AGG - chr1_2:48402697-48402716 None:intergenic 60.0%
GGCTCTCAGATGGCAGTGTG+TGG + chr1_2:48403451-48403470 Msa0074160:three_prime_UTR 60.0%
GGTCAACTATGCCCCCAGCC+TGG + chr1_2:48397888-48397907 Msa0074160:intron 65.0%
GGTGCAAGCAACCCCTGGCA+GGG - chr1_2:48400068-48400087 None:intergenic 65.0%
TCAGCAGCTTCCGTGGGCCT+TGG + chr1_2:48400289-48400308 Msa0074160:CDS 65.0%
CTCCCGCGAGAAAACCCAGG+TGG - chr1_2:48402694-48402713 None:intergenic 65.0%
GTCAGGAGAGCCGACCTTGG+CGG + chr1_2:48403749-48403768 Msa0074160:three_prime_UTR 65.0%
GCAGGCAGGACAACGGCCCT+CGG - chr1_2:48396617-48396636 None:intergenic 70.0%
CGGTGCAAGCAACCCCTGGC+AGG - chr1_2:48400069-48400088 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 48395156 48404294 48395156 ID=Msa0074160;Name=Msa0074160
chr1_2 mRNA 48395156 48404294 48395156 ID=Msa0074160-mRNA-1;Parent=Msa0074160;Name=Msa0074160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=132|0.83|0.84|1|0.83|0.69|13|708|900
chr1_2 exon 48395156 48395268 48395156 ID=Msa0074160-mRNA-1:exon:14727;Parent=Msa0074160-mRNA-1
chr1_2 exon 48396063 48396174 48396063 ID=Msa0074160-mRNA-1:exon:14728;Parent=Msa0074160-mRNA-1
chr1_2 exon 48396562 48396689 48396562 ID=Msa0074160-mRNA-1:exon:14729;Parent=Msa0074160-mRNA-1
chr1_2 exon 48396775 48396922 48396775 ID=Msa0074160-mRNA-1:exon:14730;Parent=Msa0074160-mRNA-1
chr1_2 exon 48397080 48397189 48397080 ID=Msa0074160-mRNA-1:exon:14731;Parent=Msa0074160-mRNA-1
chr1_2 exon 48397366 48397436 48397366 ID=Msa0074160-mRNA-1:exon:14732;Parent=Msa0074160-mRNA-1
chr1_2 exon 48397533 48397581 48397533 ID=Msa0074160-mRNA-1:exon:14733;Parent=Msa0074160-mRNA-1
chr1_2 exon 48399359 48399491 48399359 ID=Msa0074160-mRNA-1:exon:14734;Parent=Msa0074160-mRNA-1
chr1_2 exon 48399638 48399708 48399638 ID=Msa0074160-mRNA-1:exon:14735;Parent=Msa0074160-mRNA-1
chr1_2 exon 48399961 48401240 48399961 ID=Msa0074160-mRNA-1:exon:14736;Parent=Msa0074160-mRNA-1
chr1_2 exon 48402638 48402739 48402638 ID=Msa0074160-mRNA-1:exon:14737;Parent=Msa0074160-mRNA-1
chr1_2 exon 48402863 48403779 48402863 ID=Msa0074160-mRNA-1:exon:14738;Parent=Msa0074160-mRNA-1
chr1_2 exon 48403986 48404294 48403986 ID=Msa0074160-mRNA-1:exon:14739;Parent=Msa0074160-mRNA-1
chr1_2 five_prime_UTR 48395156 48395268 48395156 ID=Msa0074160-mRNA-1:five_prime_utr;Parent=Msa0074160-mRNA-1
chr1_2 five_prime_UTR 48396063 48396081 48396063 ID=Msa0074160-mRNA-1:five_prime_utr;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48396082 48396174 48396082 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48396562 48396689 48396562 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48396775 48396922 48396775 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48397080 48397189 48397080 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48397366 48397436 48397366 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48397533 48397581 48397533 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48399359 48399491 48399359 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48399638 48399708 48399638 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48399961 48401240 48399961 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48402638 48402739 48402638 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 CDS 48402863 48403380 48402863 ID=Msa0074160-mRNA-1:cds;Parent=Msa0074160-mRNA-1
chr1_2 three_prime_UTR 48403381 48403779 48403381 ID=Msa0074160-mRNA-1:three_prime_utr;Parent=Msa0074160-mRNA-1
chr1_2 three_prime_UTR 48403986 48404294 48403986 ID=Msa0074160-mRNA-1:three_prime_utr;Parent=Msa0074160-mRNA-1
Gene Sequence

>Msa0074160

ATGGGCGACAAAGGAGGGAAATCATGTCCGATATGTACCGAAGAGATGGACCTGACTGATCAGCATCTGAAGCCGTGCAAATGTGGCTATGAGATCTGTGTATGGTGTTGGCATCATATAATGGAAATGGCTCATAAGGATGAAACCGAGGGCCGTTGTCCTGCCTGCCGTTCACCTTATGACAAAGAACGCATTGTGGCTATGGCAGCTAACTGTCGAAGATTGGTTGCTGAAATGAATTCTAAAAAGAAAATACAGAAGTTAAAGCCTAAATCATCAGATGGAAGGAAACATCTTACTGATGTTAGAGTCATTCAGCGCAACCTCGTGTACATAATTGGACTGCCTCTTCACCTTGCAGATGAAGATCTACTTCAACGTAGGGAGTACTTTGGAAGGTATGGAAAGGTTTTGAAAGTGTCGATATCTCGTACAGCAACGGGCGTTATTCAACATTCTGCAAACAACATTTGCTGTGTGTATATAACTTACTCAAAAGAATCTGAAGCAGTTCGATGTATTCAATCAGTTCATTTTTTTGTACTAGAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCAGAAATGTGGAGTAGGGTCCTACAAATCATTGGTGCTACAAATAATTTGAATCGTCCTTCAGGGAGTGTTTTACCCCCACCACCAGATGATCCTAAACATGTATCATCAGCCACCAAAGTAGTGTCCAAAAGTTCTTTAGATAACCAGATTAAAGAATCCGGTTCAAGCAATGGAGCTGCCAATTCAACAGCACTTCCTGCAGCCAACTCTTGGGCAAGGTGTGTATCTGGCAGTCTTCCAAAGGATACTAGTTCATCTTCATCACGTGCTGGTAATCTGGTCAATAGAAAGATTGAAGCATCTATTGATTCCCAAACCCTGCCAGGGGTTGCTTGCACCGAAAGGTCTATTCTTGATACAAAAAAATCAGGGGAAGTTAAAGACAGCTCTGACGTGCATTCCACCAATAGTGTATCTGTACCTTCAGAGTTGAACAAACATCACATTGGTGGAAATTTTCAAACATGTGAGTCAATTGTTATCAATGAGGTTACTGTGACGAAACTTTCTGGCATTATTTTGTCTAACTGTGAAACTTATTCAGCAGCTTCCGTGGGCCTTGGTCAAGAAAAGGTTGCACCTTCTGTGAGTACAAGCTTCCTGGAGATCACCGCACCACATGATTTGAATACTAACAAGGCAGTTTCAAGTCGGGATGTGCATGGCTCATGTTCGGAGTTATCATCTGTTAGCATCAACAGTCATCTTGAAGATTCATATTTCACTCGGGATTCGGACAGAATACTTTTTACTCCTAACTCGACCGATTCCTCTTTAGGGAAGCATTTGCATCAAGATAATGAGTATTGTAAAGATCATTCAACCACACCAGCCTTTTGGGAAGATATAATTGTGGATGATATGCTAAACAAAGACTGTGATCAACAACAACACGGCAAAGGCAGCGATAATTTAGCCTCCAGGCATTATTCACCTCATTGTCCTCAGAATCTAAGCCAATCAAGCCATCATCTGAAGCAGGAAAATCAAATTCGTAACCAGAATCATTCGGGGAAGCCTTCTGAATATTTTACTGAACCCTTGGGGGCAGGATTAGAGAAGACCGTGAAGAGTGAGGGTACTGGTTCAGATGTTGATAACAAGGTTTCTTCAGACGTCGGCGAAAACAACATTATATCTAACATTTTGTCTTTGGAACTAGATGCATGGGAAGATTCAATAGTTAAGTTGTTGGATGAAAGTGATGAGCCATACACATCCTTCAAAGCACCTGCTTTGCGCAAAATCCAAGACAATAATCAGTCCAGGTTTTCCTTTGCCAGACAAAATGATTCCTTGAATAAAACCTCTGATTTGCAGCAATCATTTGGGGTTGCTGGACATGATCCTAAAGGGAATTATGCATCTGGTGGTTGTAATGGAAACAAAGACATGTTCGCTGTAAAACACCCATACGCTTTCCCATCAAGCAATTCTGTGCTATCAGATAAATTTGATGGAAGTCTGTCTTTGGCGCCCTCTAAATTTTCCATGGCAAAAGCTCATGCTTCAAGTCCACCTGGGTTTGCAATGTCAGACAGAATACCACCTGGGTTTTCTCGCGGGAGAGTAGAACAGAGTTGTAATAGTTCTGTTGAACATTTGCAGCCACAGTATGCTCCTCCATCTGTAAATATCAGCAGGATAGGAAATGTTGAGTTCAAGAATCCTATGGTATTTGACCCTAGTAGGGGAATAGTGGAGGAAAGGCTGAATAGTACACCTTTTAACCTGGGGCAAACCTTACTTCCTCAATTCAGTCGCAATGAAGATGATGCTAGACTTAAGCTGTTAATACAACAACAATCTACAGCTTCGCAGAATTCAAGACTTTCAGATCATATTGGAAATAGGTTTTCACCTCAAAGTGATGCTTATAGAACTAATTCGAGGTTTCTCGATCAATTTCAGTCTAACACACCATTTTCTGAACAACTGCATTCTCAACAGTTCAGTAGTAATATTCTTGGTTCAAATAACCAGTGGGGAAGTTGGAATGATTCCAATTATTTCAGTGGCCTGTCTATGTCTGAAGTATTGAATAATGAAATAGGGGGATTCAACAATTTCATGCCTAGTTATGAGAATATCAAGTTTAAGCACCTGAATTGA
Protein sequence

>Msa0074160

MGDKGGKSCPICTEEMDLTDQHLKPCKCGYEICVWCWHHIMEMAHKDETEGRCPACRSPYDKERIVAMAANCRRLVAEMNSKKKIQKLKPKSSDGRKHLTDVRVIQRNLVYIIGLPLHLADEDLLQRREYFGRYGKVLKVSISRTATGVIQHSANNICCVYITYSKESEAVRCIQSVHFFVLEGLVLEPQSIVMHGSEMWSRVLQIIGATNNLNRPSGSVLPPPPDDPKHVSSATKVVSKSSLDNQIKESGSSNGAANSTALPAANSWARCVSGSLPKDTSSSSSRAGNLVNRKIEASIDSQTLPGVACTERSILDTKKSGEVKDSSDVHSTNSVSVPSELNKHHIGGNFQTCESIVINEVTVTKLSGIILSNCETYSAASVGLGQEKVAPSVSTSFLEITAPHDLNTNKAVSSRDVHGSCSELSSVSINSHLEDSYFTRDSDRILFTPNSTDSSLGKHLHQDNEYCKDHSTTPAFWEDIIVDDMLNKDCDQQQHGKGSDNLASRHYSPHCPQNLSQSSHHLKQENQIRNQNHSGKPSEYFTEPLGAGLEKTVKSEGTGSDVDNKVSSDVGENNIISNILSLELDAWEDSIVKLLDESDEPYTSFKAPALRKIQDNNQSRFSFARQNDSLNKTSDLQQSFGVAGHDPKGNYASGGCNGNKDMFAVKHPYAFPSSNSVLSDKFDGSLSLAPSKFSMAKAHASSPPGFAMSDRIPPGFSRGRVEQSCNSSVEHLQPQYAPPSVNISRIGNVEFKNPMVFDPSRGIVEERLNSTPFNLGQTLLPQFSRNEDDARLKLLIQQQSTASQNSRLSDHIGNRFSPQSDAYRTNSRFLDQFQSNTPFSEQLHSQQFSSNILGSNNQWGSWNDSNYFSGLSMSEVLNNEIGGFNNFMPSYENIKFKHLN*