AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159740 MtrunA17_Chr1g0181751 97.576 330 8 0 11 340 579 908 0.0 666
Msa0159740 MtrunA17_Chr4g0030181 37.465 355 187 16 11 340 688 1032 4.00e-45 165
Msa0159740 MtrunA17_Chr2g0325921 34.473 351 201 14 11 340 653 995 2.11e-34 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159740 AT3G45630.2 31.653 357 203 15 11 337 630 975 3.02e-30 122
Msa0159740 AT3G45630.1 31.653 357 203 15 11 337 630 975 3.02e-30 122
Msa0159740 AT5G60170.2 30.398 352 211 14 11 337 631 973 7.60e-26 108
Msa0159740 AT5G60170.1 30.398 352 211 14 11 337 629 971 8.57e-26 108

Find 259 sgRNAs with CRISPR-Local

Find 592 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAATTGTGACAGAATTTC+AGG 0.180494 1_4:-30952197 None:intergenic
GATATATATTAAACTCTATT+TGG 0.214080 1_4:-30952859 None:intergenic
CGCAACCTCGTGTACATAAT+TGG 0.216432 1_4:+30945724 Msa0159740:five_prime_UTR
ACTTACATCTAAAGAACTTT+TGG 0.233420 1_4:-30948078 None:intergenic
TTCATTTGCAGGGCTTGTTT+TGG 0.243269 1_4:+30946374 Msa0159740:intron
AACTCGACCGATTCCTCTTT+AGG 0.255910 1_4:+30949114 Msa0159740:five_prime_UTR
AATTCTGAACAAACAATTTC+AGG 0.260991 1_4:-30952722 None:intergenic
CAGCAATCATTTGGGGTTGC+TGG 0.261328 1_4:+30949675 Msa0159740:CDS
TTTCAGATCATATTGGAAAT+AGG 0.261331 1_4:+30951708 Msa0159740:CDS
CACTGCCAAGCACTGGAATC+TGG 0.262289 1_4:+30952269 Msa0159740:three_prime_UTR
TGCTAATACTAATTCATCTT+TGG 0.262626 1_4:-30947016 None:intergenic
GAAGTATTGAATAATGAAAT+AGG 0.264396 1_4:+30951908 Msa0159740:CDS
CTGATTTGCAGCAATCATTT+GGG 0.265234 1_4:+30949667 Msa0159740:CDS
AGACAGGCCACTGAAATAAT+TGG 0.270957 1_4:-30951879 None:intergenic
AATAATTTGAATCGTCCTTC+AGG 0.272128 1_4:+30947993 Msa0159740:five_prime_UTR
TTTCCCTTCAATGCACTAAT+AGG 0.272870 1_4:+30952038 Msa0159740:three_prime_UTR
GCCGACCTTGGCGGTTATTA+TGG 0.274091 1_4:+30952366 Msa0159740:three_prime_UTR
GAAACTACAATCGAAGTTAT+AGG 0.282433 1_4:+30952631 Msa0159740:three_prime_UTR
ATTAGTTGTTCAGTCAATTC+AGG 0.284421 1_4:-30951979 None:intergenic
GCTTCAGATGATGGCTTGAT+TGG 0.295084 1_4:-30949314 None:intergenic
ATTCAACCACACCAGCCTTT+TGG 0.298993 1_4:+30949175 Msa0159740:five_prime_UTR
AAGGCTTCCCCGAATGATTC+TGG 0.299501 1_4:-30949356 None:intergenic
AAGCAACCCCTGGCAGGGTT+TGG 0.309174 1_4:-30948669 None:intergenic
CAGTTCAGTAGTAATATTCT+TGG 0.321542 1_4:+30951824 Msa0159740:CDS
CCAGATGCATAATTCCCTTT+AGG 0.322792 1_4:-30949705 None:intergenic
TCAAGACTTTCAGATCATAT+TGG 0.327796 1_4:+30951701 Msa0159740:CDS
TTCTGTGAGTACAAGCTTCC+TGG 0.329107 1_4:+30948939 Msa0159740:five_prime_UTR
GTGCTATCAGATAAATTTGA+TGG 0.329880 1_4:+30949795 Msa0159740:CDS
TCTGATTTGCAGCAATCATT+TGG 0.331891 1_4:+30949666 Msa0159740:CDS
AGACTTGTTTCAAATCTGTT+TGG 0.334593 1_4:+30952163 Msa0159740:three_prime_UTR
ACTCGACCGATTCCTCTTTA+GGG 0.334806 1_4:+30949115 Msa0159740:five_prime_UTR
TTGTAGCACCAATGATTTGT+AGG 0.340037 1_4:-30947971 None:intergenic
GGCAGCTCCATTGCTTGAAC+CGG 0.342584 1_4:-30948257 None:intergenic
AGCAACCCCTGGCAGGGTTT+GGG 0.345017 1_4:-30948668 None:intergenic
GAATAACAGAATACCGAGTT+TGG 0.347953 1_4:-30952750 None:intergenic
TTCATCACGTGCTGGTAATC+TGG 0.349908 1_4:+30948615 Msa0159740:five_prime_UTR
ATCGAAGTTATAGGCCTTAC+TGG 0.351396 1_4:+30952640 Msa0159740:three_prime_UTR
ACCTGGACTGATTATTGTCT+TGG 0.354617 1_4:-30949605 None:intergenic
ATTTGATGGAAGTCTGTCTT+TGG 0.355483 1_4:+30949809 Msa0159740:CDS
AAGTATTGAATAATGAAATA+GGG 0.358868 1_4:+30951909 Msa0159740:CDS
AAGGTTTGCCCCAGGTTAAA+AGG 0.359911 1_4:-30951599 None:intergenic
ACACAATTTCAGCCACATAA+AGG 0.360300 1_4:-30952112 None:intergenic
CATGCTATGAATGGTGAAAT+AGG 0.361239 1_4:+30952672 Msa0159740:three_prime_UTR
AAACTCACTGGAAAATTTAG+AGG 0.365826 1_4:-30949835 None:intergenic
GTTCTATAAGCATCACTTTG+AGG 0.368135 1_4:-30951737 None:intergenic
ACTAGGGCAAGGTGTGTATC+TGG 0.372035 1_4:+30948565 Msa0159740:intron
GAATGCAGTTGTTCAGAAAA+TGG 0.376217 1_4:-30951797 None:intergenic
TTCATATTTCACTCGGGATT+CGG 0.378364 1_4:+30949071 Msa0159740:five_prime_UTR
GAACAGAGTTGTAATAGTTC+TGG 0.383667 1_4:+30951326 Msa0159740:CDS
GGTATGTACAAAGTTAGTTT+TGG 0.385495 1_4:+30952812 Msa0159740:three_prime_UTR
TATAATGGAAATGGCTCATA+AGG 0.385777 1_4:+30945437 Msa0159740:five_prime_UTR
TTCCTTCCATCTGATGATTT+AGG 0.390471 1_4:-30945673 None:intergenic
TTGAACCGGATTCTTTAATC+TGG 0.391628 1_4:-30948243 None:intergenic
GTGGCTGATGATACATGTTT+AGG 0.393495 1_4:-30948044 None:intergenic
ATTCGTAACCAGAATCATTC+GGG 0.393709 1_4:+30949348 Msa0159740:five_prime_UTR
AAAGAGGAATCGGTCGAGTT+AGG 0.394430 1_4:-30949111 None:intergenic
TCAGCAGCTTCCGTGGGCCT+TGG 0.396088 1_4:+30948898 Msa0159740:intron
TCCTCCACTATTCCCCTACT+AGG 0.401309 1_4:-30951560 None:intergenic
GACTGAACAACTAATATTCA+TGG 0.407825 1_4:+30951987 Msa0159740:exon
CGGTGCAAGCAACCCCTGGC+AGG 0.407841 1_4:-30948675 None:intergenic
CACAATTTCAGCCACATAAA+GGG 0.413015 1_4:-30952111 None:intergenic
GCGACTGAATTGAGGAAGTA+AGG 0.414883 1_4:-30951618 None:intergenic
GATTGCCGTTGACCATTTGA+TGG 0.426623 1_4:-30952220 None:intergenic
CTATGGTATTTGACCCTAGT+AGG 0.428418 1_4:+30951546 Msa0159740:CDS
TGTATCAAGAATAGACCTTT+CGG 0.429650 1_4:-30948695 None:intergenic
GAAGATGAACTAGTATCCTT+TGG 0.429995 1_4:-30948595 None:intergenic
GCGCAAAGCAGGTGCTTTGA+AGG 0.432491 1_4:-30949577 None:intergenic
AATTCGTAACCAGAATCATT+CGG 0.433629 1_4:+30949347 Msa0159740:five_prime_UTR
TGCAGGAAGTGCTGTTGAAT+TGG 0.437192 1_4:-30948278 None:intergenic
TCCATCTCTTCGGTACATAT+CGG 0.437890 1_4:-30944961 None:intergenic
CACAATTATATCTTCCCAAA+AGG 0.441190 1_4:-30949190 None:intergenic
TTACAGTTGTCAGACATAAC+TGG 0.442635 1_4:+30952302 Msa0159740:three_prime_UTR
ACAATGCGTTCTTTGTCATA+AGG 0.443225 1_4:-30945495 None:intergenic
TTGGCATCATATAATGGAAA+TGG 0.443228 1_4:+30945428 Msa0159740:five_prime_UTR
CACAGATCTGTGTATGGTGT+TGG 0.443926 1_4:+30945409 Msa0159740:intron
AGATTCAATAGTTAAGTTGT+TGG 0.444149 1_4:+30949530 Msa0159740:CDS
CAAATAACCAGTGGGGAAGT+TGG 0.446372 1_4:+30951849 Msa0159740:CDS
ATTGATTCCCAAACCCTGCC+AGG 0.447858 1_4:+30948661 Msa0159740:five_prime_UTR
ATCAGTCAGGTCCATCTCTT+CGG 0.447989 1_4:-30944971 None:intergenic
CAAAGAACGCATTGTGGCTA+TGG 0.450857 1_4:+30945503 Msa0159740:five_prime_UTR
ACCAGTACCCTCACTCTTCA+CGG 0.451024 1_4:-30949420 None:intergenic
TCGATATCTCGTACAGCAAC+GGG 0.451883 1_4:+30945983 Msa0159740:five_prime_UTR
CACTTCCTGCAGCCAACTCT+TGG 0.453295 1_4:+30948290 Msa0159740:five_prime_UTR
AGAGCCTATTAGTGCATTGA+AGG 0.454023 1_4:-30952042 None:intergenic
GATACATGTTTAGGATCATC+TGG 0.463183 1_4:-30948035 None:intergenic
TATGCATCTGGTGGTTGTAA+TGG 0.463874 1_4:+30949717 Msa0159740:CDS
CATGTGGTGCGGTGATCTCC+AGG 0.463912 1_4:-30948957 None:intergenic
CGTGGGCCTTGGTCAAGAAA+AGG 0.470197 1_4:+30948909 Msa0159740:five_prime_UTR
GATAGCACAGAATTGCTTGA+TGG 0.470483 1_4:-30949780 None:intergenic
AAGAACCAGATTAAAGAATC+CGG 0.476974 1_4:+30948238 Msa0159740:intron
CCTAAAGGGAATTATGCATC+TGG 0.477224 1_4:+30949705 Msa0159740:CDS
TCAGAATTTGTTTCCAAACT+CGG 0.482425 1_4:+30952737 Msa0159740:three_prime_UTR
ACTGCCAAGCACTGGAATCT+GGG 0.485252 1_4:+30952270 Msa0159740:three_prime_UTR
GTCACAATTATGCCATCAAA+TGG 0.485642 1_4:+30952208 Msa0159740:three_prime_UTR
ATGCAAATGCTTCCCTAAAG+AGG 0.485653 1_4:-30949127 None:intergenic
CTCCATCTGTAAATATCAGC+AGG 0.487534 1_4:+30951498 Msa0159740:CDS
ATAATTTGAATCGTCCTTCA+GGG 0.488053 1_4:+30947994 Msa0159740:five_prime_UTR
GTCTTTGGAACTAGATGCAT+GGG 0.488988 1_4:+30949506 Msa0159740:CDS
GCTTCAGATGCTGATCAGTC+AGG 0.491128 1_4:-30944984 None:intergenic
AGGGAGTACTTTGGAAGGTA+TGG 0.494301 1_4:+30945944 Msa0159740:five_prime_UTR
ATGCTTCCCTAAAGAGGAAT+CGG 0.494776 1_4:-30949121 None:intergenic
GGATGTGCATGGCTCATGTT+CGG 0.498770 1_4:+30949011 Msa0159740:five_prime_UTR
TGACCCTAGTAGGGGAATAG+TGG 0.500098 1_4:+30951556 Msa0159740:CDS
CGGAGAAGAGAGAGTGGTGG+TGG 0.501583 1_4:-30944089 None:intergenic
TCAATACTTCAGACATAGAC+AGG 0.502092 1_4:-30951895 None:intergenic
TGAAGGTACAGATACACTAT+TGG 0.504841 1_4:-30948761 None:intergenic
TCTTCATTGCGACTGAATTG+AGG 0.507830 1_4:-30951626 None:intergenic
TTGTCTGGCAAAGGAAAACC+TGG 0.512658 1_4:-30949622 None:intergenic
TCTGTAAATATCAGCAGGAT+AGG 0.517263 1_4:+30951503 Msa0159740:CDS
CTTTCGGTGCAAGCAACCCC+TGG 0.517643 1_4:-30948679 None:intergenic
ATGCTTATAGAACTAATTCG+AGG 0.518286 1_4:+30951747 Msa0159740:CDS
TTGCTGGACATGATCCTAAA+GGG 0.518964 1_4:+30949691 Msa0159740:CDS
TGTTAAAAGATCCCTTTATG+TGG 0.522640 1_4:+30952100 Msa0159740:three_prime_UTR
ATAAATCCATTACCAAGAGT+TGG 0.523397 1_4:-30948302 None:intergenic
GCTCATGCTTCAAGTCCACC+TGG 0.528672 1_4:+30951254 Msa0159740:CDS
CATCTGAAGCCGTGCAAATG+TGG 0.529368 1_4:+30944997 Msa0159740:five_prime_UTR
AATGATTCCAATTATTTCAG+TGG 0.530132 1_4:+30951872 Msa0159740:CDS
TCCGATATGTACCGAAGAGA+TGG 0.530600 1_4:+30944960 Msa0159740:five_prime_UTR
CCTCCACTATTCCCCTACTA+GGG 0.530781 1_4:-30951559 None:intergenic
AGTAGGGTCCTACAAATCAT+TGG 0.533965 1_4:+30947963 Msa0159740:five_prime_UTR
TTAGCTTCACTGCCAAGCAC+TGG 0.533987 1_4:+30952262 Msa0159740:three_prime_UTR
AACTTATTCAGCAGCTTCCG+TGG 0.534099 1_4:+30948891 Msa0159740:intron
ATTATATCTTCCCAAAAGGC+TGG 0.535132 1_4:-30949186 None:intergenic
ATCTTCCCAAAAGGCTGGTG+TGG 0.535708 1_4:-30949181 None:intergenic
GCATGAATTTCCCACCAGTA+AGG 0.536061 1_4:-30952654 None:intergenic
AAAGAATCCGGTTCAAGCAA+TGG 0.536155 1_4:+30948250 Msa0159740:five_prime_UTR
AATCATTCCAACTTCCCCAC+TGG 0.536419 1_4:-30951856 None:intergenic
ATCAAGCCATCATCTGAAGC+AGG 0.536789 1_4:+30949317 Msa0159740:five_prime_UTR
AGTATTGAATAATGAAATAG+GGG 0.537525 1_4:+30951910 Msa0159740:CDS
GGTGCAAGCAACCCCTGGCA+GGG 0.537936 1_4:-30948674 None:intergenic
TTGATTCCCAAACCCTGCCA+GGG 0.540424 1_4:+30948662 Msa0159740:five_prime_UTR
CAGGGGTTGCTTGCACCGAA+AGG 0.541133 1_4:+30948680 Msa0159740:five_prime_UTR
AATTAGTATTAGCATTTGCA+AGG 0.541684 1_4:+30947025 Msa0159740:five_prime_UTR
TTGCTTGATGGGAAAGCGTA+TGG 0.541973 1_4:-30949768 None:intergenic
GTTGCTGGACATGATCCTAA+AGG 0.542234 1_4:+30949690 Msa0159740:CDS
ACCTCATAGCCACATTTGCA+CGG 0.542997 1_4:-30945006 None:intergenic
ATGGTGTTGGCATCATATAA+TGG 0.543359 1_4:+30945422 Msa0159740:five_prime_UTR
TATGGTATTTGACCCTAGTA+GGG 0.545322 1_4:+30951547 Msa0159740:CDS
GTCAGGAGAGCCGACCTTGG+CGG 0.545951 1_4:+30952357 Msa0159740:three_prime_UTR
CTTGATTGGCTTAGATTCTG+AGG 0.546144 1_4:-30949300 None:intergenic
TGTCTTTGGAACTAGATGCA+TGG 0.546869 1_4:+30949505 Msa0159740:CDS
TAACAAGGCAGTTTCAAGTC+GGG 0.547611 1_4:+30948990 Msa0159740:five_prime_UTR
TCTTCTCTAATCCTGCCCCA+AGG 0.547783 1_4:-30949397 None:intergenic
GTCGATATCTCGTACAGCAA+CGG 0.548555 1_4:+30945982 Msa0159740:five_prime_UTR
TGTTGAGTTCAAGAATCCTA+TGG 0.549167 1_4:+30951529 Msa0159740:CDS
TTGAAGATTCATATTTCACT+CGG 0.550404 1_4:+30949064 Msa0159740:five_prime_UTR
AGGTACAGATACACTATTGG+TGG 0.551077 1_4:-30948758 None:intergenic
CATTACCAAGAGTTGGCTGC+AGG 0.551503 1_4:-30948295 None:intergenic
GCAGCGATAATTTAGCCTCC+AGG 0.551527 1_4:+30949259 Msa0159740:five_prime_UTR
CTTCTCTAATCCTGCCCCAA+GGG 0.551916 1_4:-30949396 None:intergenic
CCATGCATGACAATACTTTG+TGG 0.552172 1_4:-30946399 None:intergenic
TGATTTGCAGCAATCATTTG+GGG 0.553932 1_4:+30949668 Msa0159740:CDS
ACAATGAGGTGAATAATGCC+TGG 0.554007 1_4:-30949277 None:intergenic
AGGACCCAGATTCCAGTGCT+TGG 0.554245 1_4:-30952274 None:intergenic
CTTCAACGTAGGGAGTACTT+TGG 0.557460 1_4:+30945935 Msa0159740:five_prime_UTR
TCCAAGACAATAATCAGTCC+AGG 0.558162 1_4:+30949604 Msa0159740:CDS
GTACTTTGGAAGGTATGGAA+AGG 0.558874 1_4:+30945949 Msa0159740:five_prime_UTR
GCAGGCAGGACAACGGCCCT+CGG 0.559341 1_4:-30945466 None:intergenic
ATAGCACAGAATTGCTTGAT+GGG 0.561523 1_4:-30949779 None:intergenic
TAAGCAAACAAGAGTGGGTG+AGG 0.562447 1_4:-30952242 None:intergenic
TCATAAGGTGAACGGCAGGC+AGG 0.563242 1_4:-30945480 None:intergenic
GTGAGTGAATGAGAGAGAGA+AGG 0.563915 1_4:-30944037 None:intergenic
AGCCTAAATCATCAGATGGA+AGG 0.565652 1_4:+30945671 Msa0159740:five_prime_UTR
TCTTGGTTCAAATAACCAGT+GGG 0.566345 1_4:+30951841 Msa0159740:CDS
ATAATTGTGACAGAATTTCA+GGG 0.567695 1_4:-30952196 None:intergenic
TGGTTCAGATGTTGATAACA+AGG 0.567738 1_4:+30949439 Msa0159740:exon
GAGAAGACCGTGAAGAGTGA+GGG 0.567760 1_4:+30949413 Msa0159740:five_prime_UTR
ACCATAATAACCGCCAAGGT+CGG 0.571077 1_4:-30952367 None:intergenic
TTTGTCATAAGGTGAACGGC+AGG 0.574302 1_4:-30945484 None:intergenic
AAGTTATAGGCCTTACTGGT+GGG 0.576685 1_4:+30952644 Msa0159740:three_prime_UTR
AGTTCATCTTCATCACGTGC+TGG 0.577681 1_4:+30948607 Msa0159740:five_prime_UTR
TTAAAGCCTAAATCATCAGA+TGG 0.577945 1_4:+30945667 Msa0159740:five_prime_UTR
TTGAACAAACATCACATTGG+TGG 0.578775 1_4:+30948787 Msa0159740:five_prime_UTR
AACTTGATATTCTCATAACT+AGG 0.580208 1_4:-30951950 None:intergenic
CTACTAGGGTCAAATACCAT+AGG 0.581897 1_4:-30951545 None:intergenic
TGAAGATTCATATTTCACTC+GGG 0.583365 1_4:+30949065 Msa0159740:five_prime_UTR
TTAGGATCATCTGGTGGTGG+AGG 0.584690 1_4:-30948026 None:intergenic
GTAGGGGAATAGTGGAGGAA+AGG 0.584951 1_4:+30951564 Msa0159740:CDS
CTTAGATTCTGAGGACAATG+AGG 0.586654 1_4:-30949291 None:intergenic
CAGATTTGAAACAAGTCTCA+AGG 0.587356 1_4:-30952158 None:intergenic
AACTCACATCTTCATCTGCA+AGG 0.587859 1_4:-30945759 None:intergenic
AGAGAAGACCGTGAAGAGTG+AGG 0.588042 1_4:+30949412 Msa0159740:five_prime_UTR
TGTCAGACATAACTGGCAAA+CGG 0.590797 1_4:+30952309 Msa0159740:three_prime_UTR
GGCTCTCAGATGGCAGTGTG+TGG 0.592367 1_4:+30952059 Msa0159740:three_prime_UTR
TGTTTAGGATCATCTGGTGG+TGG 0.593160 1_4:-30948029 None:intergenic
GAGGAAGTAAGGTTTGCCCC+AGG 0.593890 1_4:-30951607 None:intergenic
GAAGCTAAGCAAACAAGAGT+GGG 0.594190 1_4:-30952247 None:intergenic
TACTAGAAGGTAGATCATTG+AGG 0.594731 1_4:+30946280 Msa0159740:five_prime_UTR
CCACAAAGTATTGTCATGCA+TGG 0.596103 1_4:+30946399 Msa0159740:five_prime_UTR
GAGCGGAGAAGAGAGAGTGG+TGG 0.597007 1_4:-30944092 None:intergenic
CCACCAGCTACTTCAACGTA+GGG 0.597126 1_4:+30945925 Msa0159740:intron
AAATGATTGCTGCAAATCAG+AGG 0.597628 1_4:-30949664 None:intergenic
TGAGAGCGGAGAAGAGAGAG+TGG 0.597775 1_4:-30944095 None:intergenic
AGGAAGCTTGTACTCACAGA+AGG 0.598102 1_4:-30948937 None:intergenic
GGTTCAGTAAAATATTCAGA+AGG 0.600729 1_4:-30949375 None:intergenic
TGTTTGTATCTACATGATCA+TGG 0.601158 1_4:+30946973 Msa0159740:five_prime_UTR
CTGCTGATATTTACAGATGG+AGG 0.601283 1_4:-30951497 None:intergenic
GGTGCTTTGAAGGATGTGTA+TGG 0.601951 1_4:-30949567 None:intergenic
ACTTATTCAGCAGCTTCCGT+GGG 0.602554 1_4:+30948892 Msa0159740:intron
TCTTCATCTGCAAGGTGAAG+CGG 0.604091 1_4:-30945751 None:intergenic
GAAGTTATAGGCCTTACTGG+TGG 0.604366 1_4:+30952643 Msa0159740:three_prime_UTR
AATGTCAGGAGAGCCGACCT+TGG 0.605273 1_4:+30952354 Msa0159740:three_prime_UTR
AGAAAAGCTTACAGTGAGAG+CGG 0.608531 1_4:-30944109 None:intergenic
TGAAGCTAAGCAAACAAGAG+TGG 0.610309 1_4:-30952248 None:intergenic
GTTTCAAGTCGGGATGTGCA+TGG 0.610826 1_4:+30949000 Msa0159740:five_prime_UTR
TGTATCTGGCAGTCTTCCAA+AGG 0.610994 1_4:+30948579 Msa0159740:five_prime_UTR
ACCGTGAAGAGTGAGGGTAC+TGG 0.611276 1_4:+30949419 Msa0159740:five_prime_UTR
ATCCTGCTGATATTTACAGA+TGG 0.611333 1_4:-30951500 None:intergenic
CTAACAAGGCAGTTTCAAGT+CGG 0.612322 1_4:+30948989 Msa0159740:five_prime_UTR
CTATGGCAGCTAACTGTCGA+AGG 0.612354 1_4:+30945520 Msa0159740:five_prime_UTR
TGATGTTTGTTCAACTCTGA+AGG 0.613376 1_4:-30948778 None:intergenic
TCCACCAGCTACTTCAACGT+AGG 0.615567 1_4:+30945924 Msa0159740:intron
CTCATGCTTCAAGTCCACCT+GGG 0.617092 1_4:+30951255 Msa0159740:CDS
CCCTAGTAGGGGAATAGTGG+AGG 0.622353 1_4:+30951559 Msa0159740:CDS
GTTCTTTGTCATAAGGTGAA+CGG 0.623891 1_4:-30945488 None:intergenic
TGGGAAATTCATGCTATGAA+TGG 0.624607 1_4:+30952663 Msa0159740:three_prime_UTR
AACGTAGGGAGTACTTTGGA+AGG 0.624800 1_4:+30945939 Msa0159740:five_prime_UTR
GGCTCATAAGGATGAAACCG+AGG 0.625328 1_4:+30945449 Msa0159740:five_prime_UTR
AACTCACTGGAAAATTTAGA+GGG 0.627206 1_4:-30949834 None:intergenic
GTCTGACAACTGTAATGCAT+AGG 0.627452 1_4:-30952294 None:intergenic
TGATTCCCAAACCCTGCCAG+GGG 0.628214 1_4:+30948663 Msa0159740:five_prime_UTR
AACAAGGTTTCTTCAGACGT+CGG 0.630644 1_4:+30949455 Msa0159740:CDS
TGCTTGATGGGAAAGCGTAT+GGG 0.632136 1_4:-30949767 None:intergenic
TTCTTGGTTCAAATAACCAG+TGG 0.634073 1_4:+30951840 Msa0159740:CDS
GGAGGTAAAACACTCCCTGA+AGG 0.636149 1_4:-30948008 None:intergenic
CTGTCTGACATTGCAAACCC+AGG 0.638003 1_4:-30951272 None:intergenic
TGCACTAATAGGCTCTCAGA+TGG 0.639965 1_4:+30952049 Msa0159740:three_prime_UTR
GAGCCTATTAGTGCATTGAA+GGG 0.641833 1_4:-30952041 None:intergenic
GATCAACAACAACACGGCAA+AGG 0.646466 1_4:+30949237 Msa0159740:five_prime_UTR
TTATGCCATCAAATGGTCAA+CGG 0.646638 1_4:+30952215 Msa0159740:three_prime_UTR
AAACAGTCTCTATTGCTGCA+AGG 0.648038 1_4:-30946955 None:intergenic
TTGTTAGTATTCAAATCATG+TGG 0.654500 1_4:-30948973 None:intergenic
ACTCTCCCGCGAGAAAACCC+AGG 0.659154 1_4:-30951302 None:intergenic
AAAGGGAATTATGCATCTGG+TGG 0.660201 1_4:+30949708 Msa0159740:CDS
GTGAACGGCAGGCAGGACAA+CGG 0.664000 1_4:-30945473 None:intergenic
GCTCATAAGGATGAAACCGA+GGG 0.665241 1_4:+30945450 Msa0159740:five_prime_UTR
TCTGACATTGCAAACCCAGG+TGG 0.667610 1_4:-30951269 None:intergenic
ATGGTATTTGACCCTAGTAG+GGG 0.670671 1_4:+30951548 Msa0159740:CDS
CAAATATGACTTTAGTACTG+TGG 0.671167 1_4:+30952791 Msa0159740:three_prime_UTR
GCCGTGCAAATGTGGCTATG+AGG 0.674534 1_4:+30945005 Msa0159740:five_prime_UTR
ACTCACCATAATAACCGCCA+AGG 0.679005 1_4:-30952371 None:intergenic
ATGTCAGACAGAATACCACC+TGG 0.679445 1_4:+30951284 Msa0159740:CDS
ACATGATTTGAATACTAACA+AGG 0.682637 1_4:+30948975 Msa0159740:five_prime_UTR
GACTGTGATCAACAACAACA+CGG 0.682869 1_4:+30949231 Msa0159740:five_prime_UTR
TCATGCATGGCTCAGAAATG+TGG 0.685600 1_4:+30946412 Msa0159740:five_prime_UTR
TGAACAACTAATATTCATGG+TGG 0.689343 1_4:+30951990 Msa0159740:three_prime_UTR
GAGTTGAACAAACATCACAT+TGG 0.697798 1_4:+30948784 Msa0159740:five_prime_UTR
CTTGGTTCAAATAACCAGTG+GGG 0.702385 1_4:+30951842 Msa0159740:CDS
TTATGACAAAGAACGCATTG+TGG 0.704239 1_4:+30945497 Msa0159740:five_prime_UTR
TATTGTGTAGCTGAATACCG+TGG 0.706869 1_4:+30944905 Msa0159740:intron
TTCGTAACCAGAATCATTCG+GGG 0.706891 1_4:+30949349 Msa0159740:five_prime_UTR
ACAGATGGAGGAGCATACTG+TGG 0.707322 1_4:-30951485 None:intergenic
GCAGTCCAATTATGTACACG+AGG 0.722241 1_4:-30945729 None:intergenic
TGTCAGACAGAATACCACCT+GGG 0.740545 1_4:+30951285 Msa0159740:CDS
AGTATTCAAATCATGTGGTG+CGG 0.743229 1_4:-30948968 None:intergenic
CTCCCGCGAGAAAACCCAGG+TGG 0.744790 1_4:-30951299 None:intergenic
GTATTGAATAATGAAATAGG+GGG 0.745932 1_4:+30951911 Msa0159740:CDS
ATGAGGTGAATAATGCCTGG+AGG 0.749776 1_4:-30949274 None:intergenic
ACATGTTTAGGATCATCTGG+TGG 0.761344 1_4:-30948032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAAAAAATGAGTTA+GGG - chr1_4:30946712-30946731 None:intergenic 10.0%
!! TTAAATAAAAAAAATGAGTT+AGG - chr1_4:30946713-30946732 None:intergenic 10.0%
!!! TTTTTTTTATTTAACTATAG+AGG + chr1_4:30946719-30946738 Msa0159740:intron 10.0%
!!! TAAAATTTAAGTTATAAACA+TGG - chr1_4:30952521-30952540 None:intergenic 10.0%
!!! ATATCAAGTAATCAATTTTT+AGG + chr1_4:30945573-30945592 Msa0159740:intron 15.0%
!!! GATTTAATTTTCTTATCTTT+AGG + chr1_4:30946196-30946215 Msa0159740:intron 15.0%
!!! TTCTACTATTTTGTTTTTTT+AGG + chr1_4:30948161-30948180 Msa0159740:intron 15.0%
!! AAAAAAATAAAAAAACTCAC+TGG - chr1_4:30949850-30949869 None:intergenic 15.0%
!!! TTTTTTTTTTGTTTTTTGAG+AGG + chr1_4:30950203-30950222 Msa0159740:intron 15.0%
!!! TTCTGTTTTATTTTATTATG+TGG + chr1_4:30950375-30950394 Msa0159740:intron 15.0%
!!! TTTTTTTACTTTTCTACTAT+AGG + chr1_4:30950676-30950695 Msa0159740:intron 15.0%
!!! AAGTATTGAATAATGAAATA+GGG + chr1_4:30951909-30951928 Msa0159740:CDS 15.0%
!! GATATATATTAAACTCTATT+TGG - chr1_4:30952862-30952881 None:intergenic 15.0%
!!! TTTCATTTCACTTTTTCTTA+GGG + chr1_4:30944179-30944198 Msa0159740:intron 20.0%
!!! TGAAATTTGTTGCAATTATT+AGG + chr1_4:30944480-30944499 Msa0159740:intron 20.0%
!!! TTGTTATTCTTCTTGTTTTT+AGG + chr1_4:30944775-30944794 Msa0159740:intron 20.0%
!!! TGTTATTCTTCTTGTTTTTA+GGG + chr1_4:30944776-30944795 Msa0159740:intron 20.0%
!! TTAAGATGAAAAAACCTATT+TGG + chr1_4:30945276-30945295 Msa0159740:intron 20.0%
!! TTAAACTACACAAACTAATA+TGG - chr1_4:30945849-30945868 None:intergenic 20.0%
!! GAAAATAATGACATAAACAA+GGG - chr1_4:30946112-30946131 None:intergenic 20.0%
!! AGAAAATAATGACATAAACA+AGG - chr1_4:30946113-30946132 None:intergenic 20.0%
!! GTATATCTATAGTATTATTC+CGG + chr1_4:30946532-30946551 Msa0159740:intron 20.0%
!! GATAATTTATATAGTATGTG+AGG - chr1_4:30946923-30946942 None:intergenic 20.0%
!! TACTATATAAATTATCTTGC+TGG + chr1_4:30946927-30946946 Msa0159740:intron 20.0%
!! ATTCAAAAGTTCAATCAAAA+TGG - chr1_4:30947085-30947104 None:intergenic 20.0%
!!! GTAATGGATTTATGAATATT+TGG + chr1_4:30948312-30948331 Msa0159740:intron 20.0%
!! ATTCTTGATACAAAAAAATC+AGG + chr1_4:30948706-30948725 Msa0159740:five_prime_UTR 20.0%
!! TTCTTGATACAAAAAAATCA+GGG + chr1_4:30948707-30948726 Msa0159740:five_prime_UTR 20.0%
!! TTAACAAAATTTGATGTTCA+TGG + chr1_4:30950298-30950317 Msa0159740:intron 20.0%
!! TAACAAAATTTGATGTTCAT+GGG + chr1_4:30950299-30950318 Msa0159740:intron 20.0%
!!! TTATAGTTGCACTTTTTAAT+AGG - chr1_4:30950607-30950626 None:intergenic 20.0%
!! ATAATGCATCTTTAATAAAG+CGG + chr1_4:30951020-30951039 Msa0159740:intron 20.0%
!!! GAAGTATTGAATAATGAAAT+AGG + chr1_4:30951908-30951927 Msa0159740:CDS 20.0%
!!! AGTATTGAATAATGAAATAG+GGG + chr1_4:30951910-30951929 Msa0159740:CDS 20.0%
!!! TATTATGGTGAGTTTTAAAT+TGG + chr1_4:30952381-30952400 Msa0159740:intron 20.0%
!!! CTTTCATTTCACTTTTTCTT+AGG + chr1_4:30944178-30944197 Msa0159740:intron 25.0%
! ATAAACAAACGCAGAATAAT+CGG - chr1_4:30944332-30944351 None:intergenic 25.0%
! CAACGTATACAAAAAATAAG+CGG - chr1_4:30944370-30944389 None:intergenic 25.0%
!!! TTTTTCCTCTCTTTGTTTTT+AGG + chr1_4:30944694-30944713 Msa0159740:intron 25.0%
!!! TTTTCCTCTCTTTGTTTTTA+GGG + chr1_4:30944695-30944714 Msa0159740:intron 25.0%
!! ATTGTTTTCTTGTTCTCATT+AGG + chr1_4:30944862-30944881 Msa0159740:intron 25.0%
!! TTGTTTTCTTGTTCTCATTA+GGG + chr1_4:30944863-30944882 Msa0159740:intron 25.0%
! AAGAACTCATAATATGTCTT+CGG - chr1_4:30945236-30945255 None:intergenic 25.0%
! TATCAATTGAAGGGATAAAA+TGG - chr1_4:30945889-30945908 None:intergenic 25.0%
! GAAACATGTTATCAATTGAA+GGG - chr1_4:30945898-30945917 None:intergenic 25.0%
! AGAAACATGTTATCAATTGA+AGG - chr1_4:30945899-30945918 None:intergenic 25.0%
!! TCAATTGATAACATGTTTCT+TGG + chr1_4:30945899-30945918 Msa0159740:intron 25.0%
! TCTACCTAATTATCATTTGA+AGG + chr1_4:30946132-30946151 Msa0159740:intron 25.0%
!!! GTTCATTTTTTTGTACTAGA+AGG + chr1_4:30946267-30946286 Msa0159740:five_prime_UTR 25.0%
!!! TAAGGATATACCATTTTGAT+TGG + chr1_4:30946303-30946322 Msa0159740:intron 25.0%
!!! AAGGATATACCATTTTGATT+GGG + chr1_4:30946304-30946323 Msa0159740:intron 25.0%
! TGGATTAAACTTTGTAGAAT+GGG + chr1_4:30946510-30946529 Msa0159740:intron 25.0%
! TATTATTCCGGAAATAATTC+TGG + chr1_4:30946544-30946563 Msa0159740:intron 25.0%
! TAAAACTGAAAAGATAACAC+AGG + chr1_4:30946618-30946637 Msa0159740:intron 25.0%
! AAAACTGAAAAGATAACACA+GGG + chr1_4:30946619-30946638 Msa0159740:intron 25.0%
! TACGTAAGGAAATAATTTAG+TGG - chr1_4:30946792-30946811 None:intergenic 25.0%
! TGCTAATACTAATTCATCTT+TGG - chr1_4:30947019-30947038 None:intergenic 25.0%
! AATTAGTATTAGCATTTGCA+AGG + chr1_4:30947025-30947044 Msa0159740:five_prime_UTR 25.0%
!!! TTGGCAGTTCAAATTTTAAT+TGG + chr1_4:30947164-30947183 Msa0159740:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_4:30947305-30947324 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_4:30947314-30947333 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_4:30947313-30947332 Msa0159740:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_4:30947314-30947333 Msa0159740:intron 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG + chr1_4:30947472-30947491 Msa0159740:intron 25.0%
!! TCTTCTTTGATTGTAGTTTT+GGG + chr1_4:30947473-30947492 Msa0159740:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_4:30947305-30947324 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_4:30947314-30947333 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_4:30947313-30947332 Msa0159740:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_4:30947314-30947333 Msa0159740:intron 25.0%
! TGACATATTTGTGGAAATTA+TGG - chr1_4:30947305-30947324 None:intergenic 25.0%
! ATACTTGTTTGACATATTTG+TGG - chr1_4:30947314-30947333 None:intergenic 25.0%
! ACAAATATGTCAAACAAGTA+TGG + chr1_4:30947313-30947332 Msa0159740:intron 25.0%
! CAAATATGTCAAACAAGTAT+GGG + chr1_4:30947314-30947333 Msa0159740:intron 25.0%
!! ATCTTCTTTGATTGTAGTTT+TGG + chr1_4:30947472-30947491 Msa0159740:intron 25.0%
!! TTTTGTCTTTTGTGTGTTAA+AGG + chr1_4:30947940-30947959 Msa0159740:intron 25.0%
!! ACTTACATCTAAAGAACTTT+TGG - chr1_4:30948081-30948100 None:intergenic 25.0%
! ATTAATGAACATTACTTCTG+TGG + chr1_4:30948101-30948120 Msa0159740:intron 25.0%
! TGTGGTAAACTTATTTATTG+TGG + chr1_4:30948119-30948138 Msa0159740:intron 25.0%
! GTGGTAAACTTATTTATTGT+GGG + chr1_4:30948120-30948139 Msa0159740:intron 25.0%
! ACTAAAAAAAATGCTAGAAG+TGG - chr1_4:30948518-30948537 None:intergenic 25.0%
!!! ACTTTTTGGTATATTGTACT+AGG + chr1_4:30948548-30948567 Msa0159740:intron 25.0%
!!! CTTTTTGGTATATTGTACTA+GGG + chr1_4:30948549-30948568 Msa0159740:intron 25.0%
! TCTTGATACAAAAAAATCAG+GGG + chr1_4:30948708-30948727 Msa0159740:five_prime_UTR 25.0%
! TTGTTAGTATTCAAATCATG+TGG - chr1_4:30948976-30948995 None:intergenic 25.0%
! ACATGATTTGAATACTAACA+AGG + chr1_4:30948975-30948994 Msa0159740:five_prime_UTR 25.0%
! TTGAAGATTCATATTTCACT+CGG + chr1_4:30949064-30949083 Msa0159740:five_prime_UTR 25.0%
!! AGATTCAATAGTTAAGTTGT+TGG + chr1_4:30949530-30949549 Msa0159740:CDS 25.0%
!! TAAATGTTTTCTTTCCAATC+AGG + chr1_4:30949941-30949960 Msa0159740:intron 25.0%
!! TGGATTTTTCCTTAAAAATC+CGG + chr1_4:30950066-30950085 Msa0159740:intron 25.0%
! CATTAATTTAGTGCTTCTAT+AGG + chr1_4:30950273-30950292 Msa0159740:intron 25.0%
! TTATTCCTGTATATATGTTC+TGG + chr1_4:30950401-30950420 Msa0159740:intron 25.0%
! GATGTCTTTATGAAGTTATT+TGG + chr1_4:30950423-30950442 Msa0159740:intron 25.0%
!!! ACTTTAAAACTAGCCAATTA+AGG + chr1_4:30950560-30950579 Msa0159740:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG - chr1_4:30950880-30950899 None:intergenic 25.0%
! TTTCAGATCATATTGGAAAT+AGG + chr1_4:30951708-30951727 Msa0159740:CDS 25.0%
! AATGATTCCAATTATTTCAG+TGG + chr1_4:30951872-30951891 Msa0159740:CDS 25.0%
! GTATTGAATAATGAAATAGG+GGG + chr1_4:30951911-30951930 Msa0159740:CDS 25.0%
! AACTTGATATTCTCATAACT+AGG - chr1_4:30951953-30951972 None:intergenic 25.0%
!!! ATCTTTTAACATTTTGAGAC+AGG - chr1_4:30952091-30952110 None:intergenic 25.0%
! ATAATTGTGACAGAATTTCA+GGG - chr1_4:30952199-30952218 None:intergenic 25.0%
! TCAGAAACTGATCATATAAA+AGG - chr1_4:30952544-30952563 None:intergenic 25.0%
!!! TCTATTTTTGCAGTTAAACT+GGG + chr1_4:30952581-30952600 Msa0159740:intron 25.0%
! AATTCTGAACAAACAATTTC+AGG - chr1_4:30952725-30952744 None:intergenic 25.0%
! AACTCTATTTGGTAAAAAGT+TGG - chr1_4:30952851-30952870 None:intergenic 25.0%
AATGAAGAATCTCGAAATGA+GGG - chr1_4:30944148-30944167 None:intergenic 30.0%
AAATGAAGAATCTCGAAATG+AGG - chr1_4:30944149-30944168 None:intergenic 30.0%
AAGTGAAATGAAAGTAACGA+GGG - chr1_4:30944172-30944191 None:intergenic 30.0%
AAAGTGAAATGAAAGTAACG+AGG - chr1_4:30944173-30944192 None:intergenic 30.0%
ATCTTCACATGTTGAAATCA+CGG - chr1_4:30944304-30944323 None:intergenic 30.0%
AAACCAGTCACAAAAAATGA+CGG - chr1_4:30944516-30944535 None:intergenic 30.0%
AAAACCCTAAAAACAAAGAG+AGG - chr1_4:30944702-30944721 None:intergenic 30.0%
! TATTGTGTAGCTTTTGTCAT+TGG + chr1_4:30944745-30944764 Msa0159740:intron 30.0%
ATGATACACGTGTAAGAAAA+TGG - chr1_4:30945084-30945103 None:intergenic 30.0%
TAATTTACCGTTGAATACTC+TGG + chr1_4:30945103-30945122 Msa0159740:intron 30.0%
AGATGAAAAAACCTATTTGG+TGG + chr1_4:30945279-30945298 Msa0159740:intron 30.0%
GATGAAAAAACCTATTTGGT+GGG + chr1_4:30945280-30945299 Msa0159740:intron 30.0%
! AAAAGCAAGAAAAGCATAAC+AGG + chr1_4:30945353-30945372 Msa0159740:intron 30.0%
! TTGGCATCATATAATGGAAA+TGG + chr1_4:30945428-30945447 Msa0159740:five_prime_UTR 30.0%
! TATAATGGAAATGGCTCATA+AGG + chr1_4:30945437-30945456 Msa0159740:five_prime_UTR 30.0%
TTAAAGCCTAAATCATCAGA+TGG + chr1_4:30945667-30945686 Msa0159740:five_prime_UTR 30.0%
CCAACCTTCAAATGATAATT+AGG - chr1_4:30946139-30946158 None:intergenic 30.0%
CCTAATTATCATTTGAAGGT+TGG + chr1_4:30946136-30946155 Msa0159740:intron 30.0%
ATCATTTGAAGGTTGGAATT+TGG + chr1_4:30946143-30946162 Msa0159740:intron 30.0%
AAGTAACAACCCAATCAAAA+TGG - chr1_4:30946316-30946335 None:intergenic 30.0%
! TTTTCGTGATTTTGTGATGA+TGG + chr1_4:30946342-30946361 Msa0159740:intron 30.0%
! TTTCGTGATTTTGTGATGAT+GGG + chr1_4:30946343-30946362 Msa0159740:intron 30.0%
CTGGATTAAACTTTGTAGAA+TGG + chr1_4:30946509-30946528 Msa0159740:intron 30.0%
! CTCTTGTAAATCTACGATTT+TGG - chr1_4:30946588-30946607 None:intergenic 30.0%
AGGAAATAATTTAGTGGTTC+AGG - chr1_4:30946786-30946805 None:intergenic 30.0%
AATTAAGTAGCAGATTGCAT+GGG - chr1_4:30946841-30946860 None:intergenic 30.0%
TAATTAAGTAGCAGATTGCA+TGG - chr1_4:30946842-30946861 None:intergenic 30.0%
CTACTACTATGGTCTATATT+AGG - chr1_4:30946897-30946916 None:intergenic 30.0%
CTAATATAGACCATAGTAGT+AGG + chr1_4:30946895-30946914 Msa0159740:intron 30.0%
TGTTTGTATCTACATGATCA+TGG + chr1_4:30946973-30946992 Msa0159740:five_prime_UTR 30.0%
GACCATATTGTGTATTCATT+TGG + chr1_4:30947145-30947164 Msa0159740:intron 30.0%
TGCCAAATGAATACACAATA+TGG - chr1_4:30947150-30947169 None:intergenic 30.0%
! TCAATGTCTTTTTACTTCTC+TGG + chr1_4:30947194-30947213 Msa0159740:intron 30.0%
TGAAAGCAATCAAACTTAAG+AGG - chr1_4:30947228-30947247 None:intergenic 30.0%
ATCATGCATAACATAGTCTT+AGG + chr1_4:30947274-30947293 Msa0159740:intron 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_4:30947370-30947389 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_4:30947374-30947393 Msa0159740:intron 30.0%
AAATTATGGAGAAACCTAAG+AGG - chr1_4:30947291-30947310 None:intergenic 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_4:30947370-30947389 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_4:30947374-30947393 Msa0159740:intron 30.0%
CATTAGTATGTCAAACTAGA+AGG + chr1_4:30947681-30947700 Msa0159740:intron 30.0%
ATCATGCATAACATAGTCTT+AGG + chr1_4:30947274-30947293 Msa0159740:intron 30.0%
AAATAAAGAGGTCATACAGA+AGG - chr1_4:30947370-30947389 None:intergenic 30.0%
! TATGACCTCTTTATTTGTCT+TGG + chr1_4:30947374-30947393 Msa0159740:intron 30.0%
! TTTTGTGTGTTAAAGGAGTA+GGG + chr1_4:30947947-30947966 Msa0159740:intron 30.0%
AATAATTTGAATCGTCCTTC+AGG + chr1_4:30947993-30948012 Msa0159740:five_prime_UTR 30.0%
ATAATTTGAATCGTCCTTCA+GGG + chr1_4:30947994-30948013 Msa0159740:five_prime_UTR 30.0%
AAGAACCAGATTAAAGAATC+CGG + chr1_4:30948238-30948257 Msa0159740:intron 30.0%
ATAAATCCATTACCAAGAGT+TGG - chr1_4:30948305-30948324 None:intergenic 30.0%
!!! TCGCATTAATTTGTTTTGCA+TGG + chr1_4:30948340-30948359 Msa0159740:intron 30.0%
AACTGCCATAAAAATATAGC+TGG - chr1_4:30948469-30948488 None:intergenic 30.0%
!! GAAGTGGATTTGTTATTTCA+TGG - chr1_4:30948502-30948521 None:intergenic 30.0%
TGTATCAAGAATAGACCTTT+CGG - chr1_4:30948698-30948717 None:intergenic 30.0%
TGAGTCAATTGTTATCAATG+AGG + chr1_4:30948825-30948844 Msa0159740:intron 30.0%
TGAAGATTCATATTTCACTC+GGG + chr1_4:30949065-30949084 Msa0159740:five_prime_UTR 30.0%
CACAATTATATCTTCCCAAA+AGG - chr1_4:30949193-30949212 None:intergenic 30.0%
!! CTTTTGGGAAGATATAATTG+TGG + chr1_4:30949191-30949210 Msa0159740:five_prime_UTR 30.0%
AATTCGTAACCAGAATCATT+CGG + chr1_4:30949347-30949366 Msa0159740:five_prime_UTR 30.0%
GGTTCAGTAAAATATTCAGA+AGG - chr1_4:30949378-30949397 None:intergenic 30.0%
! TGAATATTTTACTGAACCCT+TGG + chr1_4:30949380-30949399 Msa0159740:five_prime_UTR 30.0%
! GAATATTTTACTGAACCCTT+GGG + chr1_4:30949381-30949400 Msa0159740:five_prime_UTR 30.0%
! AATATTTTACTGAACCCTTG+GGG + chr1_4:30949382-30949401 Msa0159740:five_prime_UTR 30.0%
! ATTCAAGGAATCATTTTGTC+TGG - chr1_4:30949640-30949659 None:intergenic 30.0%
!!! CAAATCAGAGGTTTTATTCA+AGG - chr1_4:30949655-30949674 None:intergenic 30.0%
GTGCTATCAGATAAATTTGA+TGG + chr1_4:30949795-30949814 Msa0159740:CDS 30.0%
AACTCACTGGAAAATTTAGA+GGG - chr1_4:30949837-30949856 None:intergenic 30.0%
AAACTCACTGGAAAATTTAG+AGG - chr1_4:30949838-30949857 None:intergenic 30.0%
GTTACTCATTAACACACATT+GGG - chr1_4:30949888-30949907 None:intergenic 30.0%
TGTTACTCATTAACACACAT+TGG - chr1_4:30949889-30949908 None:intergenic 30.0%
AAGTACTTCATCTTTGAGTA+TGG + chr1_4:30949914-30949933 Msa0159740:intron 30.0%
TAAGTGAACGAGAAAGATAA+AGG - chr1_4:30950106-30950125 None:intergenic 30.0%
TTTCTCGTTCACTTAATTGA+TGG + chr1_4:30950111-30950130 Msa0159740:intron 30.0%
CACTTAATTGATGGAGTAAA+TGG + chr1_4:30950120-30950139 Msa0159740:intron 30.0%
AAGTAGCTATGACATAATGT+TGG + chr1_4:30950244-30950263 Msa0159740:intron 30.0%
ATCAACAATGTTGCAATCTT+TGG + chr1_4:30950457-30950476 Msa0159740:intron 30.0%
!! AGTTGCACTTTTTAATAGGT+TGG - chr1_4:30950603-30950622 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG - chr1_4:30950764-30950783 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG + chr1_4:30950765-30950784 Msa0159740:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG - chr1_4:30950823-30950842 None:intergenic 30.0%
! TTTTCGAATGGTTTCTCTAA+TGG - chr1_4:30950833-30950852 None:intergenic 30.0%
AACCATTCGAAAAGATTTAG+AGG + chr1_4:30950840-30950859 Msa0159740:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG + chr1_4:30950884-30950903 Msa0159740:intron 30.0%
AACATTTCATGATACACCAA+GGG - chr1_4:30951078-30951097 None:intergenic 30.0%
AAACATTTCATGATACACCA+AGG - chr1_4:30951079-30951098 None:intergenic 30.0%
! AATAGTACACCTTTTAACCT+GGG + chr1_4:30951590-30951609 Msa0159740:CDS 30.0%
TCAAGACTTTCAGATCATAT+TGG + chr1_4:30951701-30951720 Msa0159740:CDS 30.0%
ATGCTTATAGAACTAATTCG+AGG + chr1_4:30951747-30951766 Msa0159740:CDS 30.0%
CAGTTCAGTAGTAATATTCT+TGG + chr1_4:30951824-30951843 Msa0159740:CDS 30.0%
ATTAGTTGTTCAGTCAATTC+AGG - chr1_4:30951982-30952001 None:intergenic 30.0%
GACTGAACAACTAATATTCA+TGG + chr1_4:30951987-30952006 Msa0159740:exon 30.0%
TGAACAACTAATATTCATGG+TGG + chr1_4:30951990-30952009 Msa0159740:three_prime_UTR 30.0%
TGTTAAAAGATCCCTTTATG+TGG + chr1_4:30952100-30952119 Msa0159740:three_prime_UTR 30.0%
! GCTGAAATTGTGTTTTACTA+TGG + chr1_4:30952122-30952141 Msa0159740:three_prime_UTR 30.0%
! AGACTTGTTTCAAATCTGTT+TGG + chr1_4:30952163-30952182 Msa0159740:three_prime_UTR 30.0%
CATAATTGTGACAGAATTTC+AGG - chr1_4:30952200-30952219 None:intergenic 30.0%
! TTCAAAAGGAAAAGTACAAG+TGG - chr1_4:30952478-30952497 None:intergenic 30.0%
ATAAACATGGAGCAATCTTA+GGG - chr1_4:30952508-30952527 None:intergenic 30.0%
TATAAACATGGAGCAATCTT+AGG - chr1_4:30952509-30952528 None:intergenic 30.0%
!!! CTCTATTTTTGCAGTTAAAC+TGG + chr1_4:30952580-30952599 Msa0159740:intron 30.0%
GAAACTACAATCGAAGTTAT+AGG + chr1_4:30952631-30952650 Msa0159740:three_prime_UTR 30.0%
! TCAGAATTTGTTTCCAAACT+CGG + chr1_4:30952737-30952756 Msa0159740:three_prime_UTR 30.0%
CAAATATGACTTTAGTACTG+TGG + chr1_4:30952791-30952810 Msa0159740:three_prime_UTR 30.0%
!! GGTATGTACAAAGTTAGTTT+TGG + chr1_4:30952812-30952831 Msa0159740:three_prime_UTR 30.0%
GTATACGTTGTCAGAGTTAA+CGG + chr1_4:30944380-30944399 Msa0159740:intron 35.0%
ACGGAATGTTCATTTCTGTT+AGG + chr1_4:30944399-30944418 Msa0159740:intron 35.0%
CGGAATGTTCATTTCTGTTA+GGG + chr1_4:30944400-30944419 Msa0159740:intron 35.0%
! AATGTTGATGTGCTGTGTTT+TGG + chr1_4:30944608-30944627 Msa0159740:intron 35.0%
CTGAGTAGGTTTATCATTTC+TGG + chr1_4:30944661-30944680 Msa0159740:intron 35.0%
TGAATACCGTGGAGAAAAAT+GGG + chr1_4:30944916-30944935 Msa0159740:five_prime_UTR 35.0%
! CATCAAACCAGAGTATTCAA+CGG - chr1_4:30945113-30945132 None:intergenic 35.0%
! TCTTTTCACAGATCTGTGTA+TGG + chr1_4:30945403-30945422 Msa0159740:intron 35.0%
!! ATGGTGTTGGCATCATATAA+TGG + chr1_4:30945422-30945441 Msa0159740:five_prime_UTR 35.0%
GTTCTTTGTCATAAGGTGAA+CGG - chr1_4:30945491-30945510 None:intergenic 35.0%
ACAATGCGTTCTTTGTCATA+AGG - chr1_4:30945498-30945517 None:intergenic 35.0%
TTATGACAAAGAACGCATTG+TGG + chr1_4:30945497-30945516 Msa0159740:five_prime_UTR 35.0%
TTCCTTCCATCTGATGATTT+AGG - chr1_4:30945676-30945695 None:intergenic 35.0%
TTCCTACTTGAACAACACTT+TGG - chr1_4:30946077-30946096 None:intergenic 35.0%
! GGAATTTGGAATTTGTTCCT+TGG + chr1_4:30946157-30946176 Msa0159740:intron 35.0%
TACTAGAAGGTAGATCATTG+AGG + chr1_4:30946280-30946299 Msa0159740:five_prime_UTR 35.0%
!! GGTGGTTATTTTCATTTGCA+GGG + chr1_4:30946364-30946383 Msa0159740:intron 35.0%
ACATAGTAGCACAAAGATGT+AGG - chr1_4:30946483-30946502 None:intergenic 35.0%
! TGTGCTACTATGTTAGAAAC+TGG + chr1_4:30946490-30946509 Msa0159740:intron 35.0%
ACTGGTACCAGAATTATTTC+CGG - chr1_4:30946554-30946573 None:intergenic 35.0%
GAAATAATTCTGGTACCAGT+AGG + chr1_4:30946554-30946573 Msa0159740:intron 35.0%
AAATGAGTAGTCCTACAAGT+CGG - chr1_4:30946673-30946692 None:intergenic 35.0%
! CTTGTAGGACTACTCATTTT+CGG + chr1_4:30946674-30946693 Msa0159740:intron 35.0%
ATGAGTTAGGGTGAAGAAAA+AGG - chr1_4:30946700-30946719 None:intergenic 35.0%
ACAAAACAAAAAGGGAATCC+AGG - chr1_4:30946761-30946780 None:intergenic 35.0%
TTCAGGCGACAAAACAAAAA+GGG - chr1_4:30946769-30946788 None:intergenic 35.0%
ATTTCCTTACGTACATCACT+AGG + chr1_4:30946799-30946818 Msa0159740:intron 35.0%
TATATTAGGATACAGCGGAA+AGG - chr1_4:30946883-30946902 None:intergenic 35.0%
TGGTCTATATTAGGATACAG+CGG - chr1_4:30946888-30946907 None:intergenic 35.0%
TAGCATTTGCAAGGTATGAT+TGG + chr1_4:30947034-30947053 Msa0159740:intron 35.0%
! TCTTTTTACTTCTCTGGTGT+TGG + chr1_4:30947200-30947219 Msa0159740:intron 35.0%
GACTATGTTATGCATGATGT+AGG - chr1_4:30947272-30947291 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_4:30947324-30947343 Msa0159740:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_4:30947382-30947401 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_4:30947413-30947432 None:intergenic 35.0%
!!! TTGTAGTTTTGGGTATGTCA+TGG + chr1_4:30947483-30947502 Msa0159740:intron 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_4:30947324-30947343 Msa0159740:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_4:30947382-30947401 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_4:30947413-30947432 None:intergenic 35.0%
AGTATGTCAAACTAGAAGGA+AGG + chr1_4:30947685-30947704 Msa0159740:intron 35.0%
GACTATGTTATGCATGATGT+AGG - chr1_4:30947272-30947291 None:intergenic 35.0%
AAACAAGTATGGGTATGTCA+TGG + chr1_4:30947324-30947343 Msa0159740:intron 35.0%
GCAATCCAAGACAAATAAAG+AGG - chr1_4:30947382-30947401 None:intergenic 35.0%
! TGAGAGTATGTCTAACTAGA+AGG - chr1_4:30947413-30947432 None:intergenic 35.0%
! CTTTTGTGTGTTAAAGGAGT+AGG + chr1_4:30947946-30947965 Msa0159740:intron 35.0%
! TTGTAGCACCAATGATTTGT+AGG - chr1_4:30947974-30947993 None:intergenic 35.0%
! GATACATGTTTAGGATCATC+TGG - chr1_4:30948038-30948057 None:intergenic 35.0%
! AGAACTTTTGGACACTACTT+TGG - chr1_4:30948069-30948088 None:intergenic 35.0%
TTGAACCGGATTCTTTAATC+TGG - chr1_4:30948246-30948265 None:intergenic 35.0%
!!! ATTTGTTTTGCATGGCAGTA+CGG + chr1_4:30948348-30948367 Msa0159740:intron 35.0%
!! CGTCACCAGCTATATTTTTA+TGG + chr1_4:30948461-30948480 Msa0159740:intron 35.0%
!! GTGGATTTGTTATTTCATGG+TGG - chr1_4:30948499-30948518 None:intergenic 35.0%
GAAGATGAACTAGTATCCTT+TGG - chr1_4:30948598-30948617 None:intergenic 35.0%
! TGAAGGTACAGATACACTAT+TGG - chr1_4:30948764-30948783 None:intergenic 35.0%
TGATGTTTGTTCAACTCTGA+AGG - chr1_4:30948781-30948800 None:intergenic 35.0%
GAGTTGAACAAACATCACAT+TGG + chr1_4:30948784-30948803 Msa0159740:five_prime_UTR 35.0%
TTGAACAAACATCACATTGG+TGG + chr1_4:30948787-30948806 Msa0159740:five_prime_UTR 35.0%
AGTATTCAAATCATGTGGTG+CGG - chr1_4:30948971-30948990 None:intergenic 35.0%
TTCATATTTCACTCGGGATT+CGG + chr1_4:30949071-30949090 Msa0159740:five_prime_UTR 35.0%
ATTATATCTTCCCAAAAGGC+TGG - chr1_4:30949189-30949208 None:intergenic 35.0%
ATTCGTAACCAGAATCATTC+GGG + chr1_4:30949348-30949367 Msa0159740:five_prime_UTR 35.0%
!! TGGTTCAGATGTTGATAACA+AGG + chr1_4:30949439-30949458 Msa0159740:exon 35.0%
AAATGATTGCTGCAAATCAG+AGG - chr1_4:30949667-30949686 None:intergenic 35.0%
! TCTGATTTGCAGCAATCATT+TGG + chr1_4:30949666-30949685 Msa0159740:CDS 35.0%
! CTGATTTGCAGCAATCATTT+GGG + chr1_4:30949667-30949686 Msa0159740:CDS 35.0%
! TGATTTGCAGCAATCATTTG+GGG + chr1_4:30949668-30949687 Msa0159740:CDS 35.0%
ATAGCACAGAATTGCTTGAT+GGG - chr1_4:30949782-30949801 None:intergenic 35.0%
ATTTGATGGAAGTCTGTCTT+TGG + chr1_4:30949809-30949828 Msa0159740:CDS 35.0%
TACTTCATCTTTGAGTATGG+TGG + chr1_4:30949917-30949936 Msa0159740:intron 35.0%
GACAATACAGAAAACCTGAT+TGG - chr1_4:30949958-30949977 None:intergenic 35.0%
ATCCTGCTTGCTCAATTAAT+TGG + chr1_4:30950046-30950065 Msa0159740:intron 35.0%
ATCCAATTAATTGAGCAAGC+AGG - chr1_4:30950051-30950070 None:intergenic 35.0%
! AGAGATTCTCCGGATTTTTA+AGG - chr1_4:30950078-30950097 None:intergenic 35.0%
TGAAACACATTCATAGTCGA+TGG + chr1_4:30950156-30950175 Msa0159740:intron 35.0%
! TTCTGTCATTTGCTTGTGAA+TGG + chr1_4:30950324-30950343 Msa0159740:intron 35.0%
! CTTGTGAATGGAAAGTATGA+TGG + chr1_4:30950336-30950355 Msa0159740:intron 35.0%
GACATCCAGAACATATATAC+AGG - chr1_4:30950409-30950428 None:intergenic 35.0%
TTCTACTATAGGTGCTAAGT+TGG + chr1_4:30950687-30950706 Msa0159740:intron 35.0%
!! GTGCTAAGTTGGTAGAAAAT+AGG + chr1_4:30950698-30950717 Msa0159740:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_4:30950707-30950726 Msa0159740:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_4:30950712-30950731 Msa0159740:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr1_4:30950768-30950787 Msa0159740:intron 35.0%
! GACCTCTAAATCTTTTCGAA+TGG - chr1_4:30950845-30950864 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_4:30950852-30950871 Msa0159740:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_4:30950864-30950883 Msa0159740:intron 35.0%
ATGCATCTTTAATAAAGCGG+AGG + chr1_4:30951023-30951042 Msa0159740:intron 35.0%
!! ATAGTAGAAGTTTTGTCCCT+TGG + chr1_4:30951059-30951078 Msa0159740:intron 35.0%
TTTCCTCTGTCTTTCATTAG+TGG + chr1_4:30951226-30951245 Msa0159740:intron 35.0%
GAACAGAGTTGTAATAGTTC+TGG + chr1_4:30951326-30951345 Msa0159740:CDS 35.0%
! AGTTCTGGTATAACTCTTCA+TGG + chr1_4:30951341-30951360 Msa0159740:intron 35.0%
ATCCTGCTGATATTTACAGA+TGG - chr1_4:30951503-30951522 None:intergenic 35.0%
TCTGTAAATATCAGCAGGAT+AGG + chr1_4:30951503-30951522 Msa0159740:CDS 35.0%
TGTTGAGTTCAAGAATCCTA+TGG + chr1_4:30951529-30951548 Msa0159740:CDS 35.0%
TATGGTATTTGACCCTAGTA+GGG + chr1_4:30951547-30951566 Msa0159740:CDS 35.0%
! GAATAGTACACCTTTTAACC+TGG + chr1_4:30951589-30951608 Msa0159740:CDS 35.0%
! ATAGTACACCTTTTAACCTG+GGG + chr1_4:30951591-30951610 Msa0159740:CDS 35.0%
GTTCTATAAGCATCACTTTG+AGG - chr1_4:30951740-30951759 None:intergenic 35.0%
GAATGCAGTTGTTCAGAAAA+TGG - chr1_4:30951800-30951819 None:intergenic 35.0%
TTCTTGGTTCAAATAACCAG+TGG + chr1_4:30951840-30951859 Msa0159740:CDS 35.0%
TCTTGGTTCAAATAACCAGT+GGG + chr1_4:30951841-30951860 Msa0159740:CDS 35.0%
TCAATACTTCAGACATAGAC+AGG - chr1_4:30951898-30951917 None:intergenic 35.0%
TTTCCCTTCAATGCACTAAT+AGG + chr1_4:30952038-30952057 Msa0159740:three_prime_UTR 35.0%
CACAATTTCAGCCACATAAA+GGG - chr1_4:30952114-30952133 None:intergenic 35.0%
ACACAATTTCAGCCACATAA+AGG - chr1_4:30952115-30952134 None:intergenic 35.0%
! CAGATTTGAAACAAGTCTCA+AGG - chr1_4:30952161-30952180 None:intergenic 35.0%
GTCACAATTATGCCATCAAA+TGG + chr1_4:30952208-30952227 Msa0159740:three_prime_UTR 35.0%
TTATGCCATCAAATGGTCAA+CGG + chr1_4:30952215-30952234 Msa0159740:three_prime_UTR 35.0%
TTACAGTTGTCAGACATAAC+TGG + chr1_4:30952302-30952321 Msa0159740:three_prime_UTR 35.0%
!! AACGGTGTCAACTTTTTCTA+TGG + chr1_4:30952327-30952346 Msa0159740:three_prime_UTR 35.0%
!! ACGGTGTCAACTTTTTCTAT+GGG + chr1_4:30952328-30952347 Msa0159740:three_prime_UTR 35.0%
! TTTTCTATGGGGTAAATGTC+AGG + chr1_4:30952340-30952359 Msa0159740:three_prime_UTR 35.0%
TGGGAAATTCATGCTATGAA+TGG + chr1_4:30952663-30952682 Msa0159740:three_prime_UTR 35.0%
CATGCTATGAATGGTGAAAT+AGG + chr1_4:30952672-30952691 Msa0159740:three_prime_UTR 35.0%
GAATAACAGAATACCGAGTT+TGG - chr1_4:30952753-30952772 None:intergenic 35.0%
AGAAAAGCTTACAGTGAGAG+CGG - chr1_4:30944112-30944131 None:intergenic 40.0%
GAATCTCGAAATGAGGGTTA+GGG - chr1_4:30944142-30944161 None:intergenic 40.0%
AGAATCTCGAAATGAGGGTT+AGG - chr1_4:30944143-30944162 None:intergenic 40.0%
!!! TTGCCGTCATTTTTTGTGAC+TGG + chr1_4:30944510-30944529 Msa0159740:intron 40.0%
TTTGGACCAATGAGTTTCAC+TGG + chr1_4:30944626-30944645 Msa0159740:intron 40.0%
CCATAACCAGTGAAACTCAT+TGG - chr1_4:30944635-30944654 None:intergenic 40.0%
! CCAATGAGTTTCACTGGTTA+TGG + chr1_4:30944632-30944651 Msa0159740:intron 40.0%
! TGTGTAGCTTTTGTCATTGG+TGG + chr1_4:30944748-30944767 Msa0159740:intron 40.0%
TATTGTGTAGCTGAATACCG+TGG + chr1_4:30944905-30944924 Msa0159740:intron 40.0%
CTGAATACCGTGGAGAAAAA+TGG + chr1_4:30944915-30944934 Msa0159740:five_prime_UTR 40.0%
TCCATCTCTTCGGTACATAT+CGG - chr1_4:30944964-30944983 None:intergenic 40.0%
ACAAAAGCAACCCACCAAAT+AGG - chr1_4:30945293-30945312 None:intergenic 40.0%
AACTGTCGAAGGTTGAGTTA+TGG + chr1_4:30945531-30945550 Msa0159740:intron 40.0%
AGCCTAAATCATCAGATGGA+AGG + chr1_4:30945671-30945690 Msa0159740:five_prime_UTR 40.0%
AACTCACATCTTCATCTGCA+AGG - chr1_4:30945762-30945781 None:intergenic 40.0%
TGTTGCTAGATGTAACTGTG+TGG + chr1_4:30945806-30945825 Msa0159740:intron 40.0%
! GTACTTTGGAAGGTATGGAA+AGG + chr1_4:30945949-30945968 Msa0159740:five_prime_UTR 40.0%
!! CACCAAAGTGTTGTTCAAGT+AGG + chr1_4:30946072-30946091 Msa0159740:intron 40.0%
GAAGGTAGATCATTGAGGTA+AGG + chr1_4:30946285-30946304 Msa0159740:intron 40.0%
!! GGGTGGTTATTTTCATTTGC+AGG + chr1_4:30946363-30946382 Msa0159740:intron 40.0%
!! TTCATTTGCAGGGCTTGTTT+TGG + chr1_4:30946374-30946393 Msa0159740:intron 40.0%
CCATGCATGACAATACTTTG+TGG - chr1_4:30946402-30946421 None:intergenic 40.0%
!! CCACAAAGTATTGTCATGCA+TGG + chr1_4:30946399-30946418 Msa0159740:five_prime_UTR 40.0%
GTTCAGGCGACAAAACAAAA+AGG - chr1_4:30946770-30946789 None:intergenic 40.0%
ATACAGCGGAAAGGAAAACA+GGG - chr1_4:30946874-30946893 None:intergenic 40.0%
ATGTGAGGAACCTACTACTA+TGG - chr1_4:30946908-30946927 None:intergenic 40.0%
AAACAGTCTCTATTGCTGCA+AGG - chr1_4:30946958-30946977 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_4:30947366-30947385 None:intergenic 40.0%
TAAGAGGTCATACAGAAGGA+AGG - chr1_4:30947525-30947544 None:intergenic 40.0%
TTCCTTCTGTATGACCTCTT+AGG + chr1_4:30947365-30947384 Msa0159740:intron 40.0%
AACCTAAGAGGTCATACAGA+AGG - chr1_4:30947529-30947548 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_4:30947366-30947385 None:intergenic 40.0%
AAAGAGGTCATACAGAAGGA+AGG - chr1_4:30947366-30947385 None:intergenic 40.0%
AGTAGGGTCCTACAAATCAT+TGG + chr1_4:30947963-30947982 Msa0159740:five_prime_UTR 40.0%
! ACATGTTTAGGATCATCTGG+TGG - chr1_4:30948035-30948054 None:intergenic 40.0%
GTGGCTGATGATACATGTTT+AGG - chr1_4:30948047-30948066 None:intergenic 40.0%
! ACTTTTGGACACTACTTTGG+TGG - chr1_4:30948066-30948085 None:intergenic 40.0%
AAAGAATCCGGTTCAAGCAA+TGG + chr1_4:30948250-30948269 Msa0159740:five_prime_UTR 40.0%
! AAAGCAGAAGCATAAGCATG+CGG - chr1_4:30948435-30948454 None:intergenic 40.0%
CATGCTTATGCTTCTGCTTT+AGG + chr1_4:30948435-30948454 Msa0159740:intron 40.0%
!!! TAGTGTGAACGCTGACTTTT+TGG + chr1_4:30948534-30948553 Msa0159740:intron 40.0%
TGGTATATTGTACTAGGGCA+AGG + chr1_4:30948554-30948573 Msa0159740:intron 40.0%
AGGTACAGATACACTATTGG+TGG - chr1_4:30948761-30948780 None:intergenic 40.0%
GTTACTGTGACGAAACTTTC+TGG + chr1_4:30948847-30948866 Msa0159740:intron 40.0%
! CTAACAAGGCAGTTTCAAGT+CGG + chr1_4:30948989-30949008 Msa0159740:five_prime_UTR 40.0%
! TAACAAGGCAGTTTCAAGTC+GGG + chr1_4:30948990-30949009 Msa0159740:five_prime_UTR 40.0%
ATGCTTCCCTAAAGAGGAAT+CGG - chr1_4:30949124-30949143 None:intergenic 40.0%
ATGCAAATGCTTCCCTAAAG+AGG - chr1_4:30949130-30949149 None:intergenic 40.0%
GACTGTGATCAACAACAACA+CGG + chr1_4:30949231-30949250 Msa0159740:five_prime_UTR 40.0%
ACAATGAGGTGAATAATGCC+TGG - chr1_4:30949280-30949299 None:intergenic 40.0%
! CTTAGATTCTGAGGACAATG+AGG - chr1_4:30949294-30949313 None:intergenic 40.0%
!! CTTGATTGGCTTAGATTCTG+AGG - chr1_4:30949303-30949322 None:intergenic 40.0%
! GATTTTCCTGCTTCAGATGA+TGG - chr1_4:30949326-30949345 None:intergenic 40.0%
TTCGTAACCAGAATCATTCG+GGG + chr1_4:30949349-30949368 Msa0159740:five_prime_UTR 40.0%
AACAAGGTTTCTTCAGACGT+CGG + chr1_4:30949455-30949474 Msa0159740:CDS 40.0%
!! GTCTTTGGAACTAGATGCAT+GGG + chr1_4:30949506-30949525 Msa0159740:CDS 40.0%
TCCAAGACAATAATCAGTCC+AGG + chr1_4:30949604-30949623 Msa0159740:CDS 40.0%
ACCTGGACTGATTATTGTCT+TGG - chr1_4:30949608-30949627 None:intergenic 40.0%
! GGAATCATTTTGTCTGGCAA+AGG - chr1_4:30949634-30949653 None:intergenic 40.0%
TTGCTGGACATGATCCTAAA+GGG + chr1_4:30949691-30949710 Msa0159740:CDS 40.0%
CCAGATGCATAATTCCCTTT+AGG - chr1_4:30949708-30949727 None:intergenic 40.0%
CCTAAAGGGAATTATGCATC+TGG + chr1_4:30949705-30949724 Msa0159740:CDS 40.0%
AAAGGGAATTATGCATCTGG+TGG + chr1_4:30949708-30949727 Msa0159740:CDS 40.0%
TATGCATCTGGTGGTTGTAA+TGG + chr1_4:30949717-30949736 Msa0159740:CDS 40.0%
GATAGCACAGAATTGCTTGA+TGG - chr1_4:30949783-30949802 None:intergenic 40.0%
! TCATGATGCCAGTTTTCTTG+TGG + chr1_4:30950022-30950041 Msa0159740:intron 40.0%
AAAGGTGAGAAGAGATTCTC+CGG - chr1_4:30950088-30950107 None:intergenic 40.0%
!! TGTGCCTGAACTTTAGCTTT+AGG + chr1_4:30950514-30950533 Msa0159740:intron 40.0%
!! GTGCCTGAACTTTAGCTTTA+GGG + chr1_4:30950515-30950534 Msa0159740:intron 40.0%
TCACCCTAAAGCTAAAGTTC+AGG - chr1_4:30950521-30950540 None:intergenic 40.0%
GTACAGTTGAGGTCCTTAAT+TGG - chr1_4:30950576-30950595 None:intergenic 40.0%
TCTTCTTACAACGGCATCTA+CGG - chr1_4:30950755-30950774 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_4:30950793-30950812 Msa0159740:intron 40.0%
ATAAAGCGGAGGTTCTTAGT+TGG + chr1_4:30951034-30951053 Msa0159740:intron 40.0%
ACTTGATATGTCACAGACAC+AGG - chr1_4:30951130-30951149 None:intergenic 40.0%
TTGCCACTAATGAAAGACAG+AGG - chr1_4:30951232-30951251 None:intergenic 40.0%
CTGCTGATATTTACAGATGG+AGG - chr1_4:30951500-30951519 None:intergenic 40.0%
CTCCATCTGTAAATATCAGC+AGG + chr1_4:30951498-30951517 Msa0159740:CDS 40.0%
CTACTAGGGTCAAATACCAT+AGG - chr1_4:30951548-30951567 None:intergenic 40.0%
CTATGGTATTTGACCCTAGT+AGG + chr1_4:30951546-30951565 Msa0159740:CDS 40.0%
ATGGTATTTGACCCTAGTAG+GGG + chr1_4:30951548-30951567 Msa0159740:CDS 40.0%
TCTTCATTGCGACTGAATTG+AGG - chr1_4:30951629-30951648 None:intergenic 40.0%
CTTGGTTCAAATAACCAGTG+GGG + chr1_4:30951842-30951861 Msa0159740:CDS 40.0%
AGACAGGCCACTGAAATAAT+TGG - chr1_4:30951882-30951901 None:intergenic 40.0%
GAGCCTATTAGTGCATTGAA+GGG - chr1_4:30952044-30952063 None:intergenic 40.0%
AGAGCCTATTAGTGCATTGA+AGG - chr1_4:30952045-30952064 None:intergenic 40.0%
! TGTGTTTTACTATGGCAGTC+TGG + chr1_4:30952130-30952149 Msa0159740:three_prime_UTR 40.0%
GAAGCTAAGCAAACAAGAGT+GGG - chr1_4:30952250-30952269 None:intergenic 40.0%
TGAAGCTAAGCAAACAAGAG+TGG - chr1_4:30952251-30952270 None:intergenic 40.0%
GTCTGACAACTGTAATGCAT+AGG - chr1_4:30952297-30952316 None:intergenic 40.0%
TGTCAGACATAACTGGCAAA+CGG + chr1_4:30952309-30952328 Msa0159740:three_prime_UTR 40.0%
!! CGGTGTCAACTTTTTCTATG+GGG + chr1_4:30952329-30952348 Msa0159740:three_prime_UTR 40.0%
TGTGTGCTAACATACATAGC+AGG + chr1_4:30952430-30952449 Msa0159740:intron 40.0%
TGCTAACATACATAGCAGGA+TGG + chr1_4:30952434-30952453 Msa0159740:intron 40.0%
CTTAGGGCAGAGATTTCAAA+AGG - chr1_4:30952492-30952511 None:intergenic 40.0%
ATCGAAGTTATAGGCCTTAC+TGG + chr1_4:30952640-30952659 Msa0159740:three_prime_UTR 40.0%
AAGTTATAGGCCTTACTGGT+GGG + chr1_4:30952644-30952663 Msa0159740:three_prime_UTR 40.0%
GTGAGTGAATGAGAGAGAGA+AGG - chr1_4:30944040-30944059 None:intergenic 45.0%
TCGAAATGAGGGTTAGGGTT+TGG - chr1_4:30944137-30944156 None:intergenic 45.0%
GGTTATGGTGCATTCTGAGT+AGG + chr1_4:30944647-30944666 Msa0159740:intron 45.0%
!! TTGTCGCCCATTTTTCTCCA+CGG - chr1_4:30944925-30944944 None:intergenic 45.0%
TGGAGAAAAATGGGCGACAA+AGG + chr1_4:30944925-30944944 Msa0159740:five_prime_UTR 45.0%
AGAAAAATGGGCGACAAAGG+AGG + chr1_4:30944928-30944947 Msa0159740:five_prime_UTR 45.0%
GAAAAATGGGCGACAAAGGA+GGG + chr1_4:30944929-30944948 Msa0159740:five_prime_UTR 45.0%
TCCGATATGTACCGAAGAGA+TGG + chr1_4:30944960-30944979 Msa0159740:five_prime_UTR 45.0%
ATCAGTCAGGTCCATCTCTT+CGG - chr1_4:30944974-30944993 None:intergenic 45.0%
ACCTCATAGCCACATTTGCA+CGG - chr1_4:30945009-30945028 None:intergenic 45.0%
CACAGATCTGTGTATGGTGT+TGG + chr1_4:30945409-30945428 Msa0159740:intron 45.0%
GCTCATAAGGATGAAACCGA+GGG + chr1_4:30945450-30945469 Msa0159740:five_prime_UTR 45.0%
TTTGTCATAAGGTGAACGGC+AGG - chr1_4:30945487-30945506 None:intergenic 45.0%
CAAAGAACGCATTGTGGCTA+TGG + chr1_4:30945503-30945522 Msa0159740:five_prime_UTR 45.0%
CTTGCCTTGCTTTAGCAGAT+TGG + chr1_4:30945609-30945628 Msa0159740:intron 45.0%
GCAACCAATCTGCTAAAGCA+AGG - chr1_4:30945616-30945635 None:intergenic 45.0%
CGCAACCTCGTGTACATAAT+TGG + chr1_4:30945724-30945743 Msa0159740:five_prime_UTR 45.0%
GCAGTCCAATTATGTACACG+AGG - chr1_4:30945732-30945751 None:intergenic 45.0%
TCTTCATCTGCAAGGTGAAG+CGG - chr1_4:30945754-30945773 None:intergenic 45.0%
GTAACTGTGTGGAGCATGAA+AGG + chr1_4:30945817-30945836 Msa0159740:intron 45.0%
!! CTTCAACGTAGGGAGTACTT+TGG + chr1_4:30945935-30945954 Msa0159740:five_prime_UTR 45.0%
!! AACGTAGGGAGTACTTTGGA+AGG + chr1_4:30945939-30945958 Msa0159740:five_prime_UTR 45.0%
!! AGGGAGTACTTTGGAAGGTA+TGG + chr1_4:30945944-30945963 Msa0159740:five_prime_UTR 45.0%
GTCGATATCTCGTACAGCAA+CGG + chr1_4:30945982-30946001 Msa0159740:five_prime_UTR 45.0%
TCGATATCTCGTACAGCAAC+GGG + chr1_4:30945983-30946002 Msa0159740:five_prime_UTR 45.0%
CAACGAATGCAAAACAGCCA+AGG - chr1_4:30946177-30946196 None:intergenic 45.0%
! TGATTGGGTTGTTACTTGCG+AGG + chr1_4:30946319-30946338 Msa0159740:intron 45.0%
!!! CGTGATTTTGTGATGATGGG+TGG + chr1_4:30946346-30946365 Msa0159740:intron 45.0%
TCATGCATGGCTCAGAAATG+TGG + chr1_4:30946412-30946431 Msa0159740:five_prime_UTR 45.0%
!! ATTTTGGCACTGCTTCCTAC+TGG - chr1_4:30946572-30946591 None:intergenic 45.0%
AGTCCTACAAGTCGGTAAAG+CGG - chr1_4:30946665-30946684 None:intergenic 45.0%
ACAAAAAGGGAATCCAGGCT+GGG - chr1_4:30946756-30946775 None:intergenic 45.0%
AACAAAAAGGGAATCCAGGC+TGG - chr1_4:30946757-30946776 None:intergenic 45.0%
TACGCCTAGTGATGTACGTA+AGG - chr1_4:30946806-30946825 None:intergenic 45.0%
GTACATCACTAGGCGTATCT+TGG + chr1_4:30946809-30946828 Msa0159740:intron 45.0%
GATACAGCGGAAAGGAAAAC+AGG - chr1_4:30946875-30946894 None:intergenic 45.0%
GGTCAAAAGACAACTAGCTG+AGG - chr1_4:30947129-30947148 None:intergenic 45.0%
! TGTTTAGGATCATCTGGTGG+TGG - chr1_4:30948032-30948051 None:intergenic 45.0%
!! TGCAGGAAGTGCTGTTGAAT+TGG - chr1_4:30948281-30948300 None:intergenic 45.0%
TGTATCTGGCAGTCTTCCAA+AGG + chr1_4:30948579-30948598 Msa0159740:five_prime_UTR 45.0%
AGTTCATCTTCATCACGTGC+TGG + chr1_4:30948607-30948626 Msa0159740:five_prime_UTR 45.0%
! TTCATCACGTGCTGGTAATC+TGG + chr1_4:30948615-30948634 Msa0159740:five_prime_UTR 45.0%
AACTTATTCAGCAGCTTCCG+TGG + chr1_4:30948891-30948910 Msa0159740:intron 45.0%
ACTTATTCAGCAGCTTCCGT+GGG + chr1_4:30948892-30948911 Msa0159740:intron 45.0%
! GTGCAACCTTTTCTTGACCA+AGG - chr1_4:30948918-30948937 None:intergenic 45.0%
AGGAAGCTTGTACTCACAGA+AGG - chr1_4:30948940-30948959 None:intergenic 45.0%
TTCTGTGAGTACAAGCTTCC+TGG + chr1_4:30948939-30948958 Msa0159740:five_prime_UTR 45.0%
AAAGAGGAATCGGTCGAGTT+AGG - chr1_4:30949114-30949133 None:intergenic 45.0%
! AACTCGACCGATTCCTCTTT+AGG + chr1_4:30949114-30949133 Msa0159740:five_prime_UTR 45.0%
! ACTCGACCGATTCCTCTTTA+GGG + chr1_4:30949115-30949134 Msa0159740:five_prime_UTR 45.0%
! ATTCAACCACACCAGCCTTT+TGG + chr1_4:30949175-30949194 Msa0159740:five_prime_UTR 45.0%
! TTCAACCACACCAGCCTTTT+GGG + chr1_4:30949176-30949195 Msa0159740:five_prime_UTR 45.0%
GATCAACAACAACACGGCAA+AGG + chr1_4:30949237-30949256 Msa0159740:five_prime_UTR 45.0%
ATGAGGTGAATAATGCCTGG+AGG - chr1_4:30949277-30949296 None:intergenic 45.0%
! GCTTCAGATGATGGCTTGAT+TGG - chr1_4:30949317-30949336 None:intergenic 45.0%
! ATCAAGCCATCATCTGAAGC+AGG + chr1_4:30949317-30949336 Msa0159740:five_prime_UTR 45.0%
!! GGTGCTTTGAAGGATGTGTA+TGG - chr1_4:30949570-30949589 None:intergenic 45.0%
! TCTTGGATTTTGCGCAAAGC+AGG - chr1_4:30949591-30949610 None:intergenic 45.0%
TTGTCTGGCAAAGGAAAACC+TGG - chr1_4:30949625-30949644 None:intergenic 45.0%
GTTGCTGGACATGATCCTAA+AGG + chr1_4:30949690-30949709 Msa0159740:CDS 45.0%
! TGCTTGATGGGAAAGCGTAT+GGG - chr1_4:30949770-30949789 None:intergenic 45.0%
! TTGCTTGATGGGAAAGCGTA+TGG - chr1_4:30949771-30949790 None:intergenic 45.0%
CTTCTTACAACGGCATCTAC+GGG - chr1_4:30950754-30950773 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr1_4:30950777-30950796 Msa0159740:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_4:30950787-30950806 Msa0159740:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr1_4:30950933-30950952 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr1_4:30950934-30950953 None:intergenic 45.0%
ATGTCAGACAGAATACCACC+TGG + chr1_4:30951284-30951303 Msa0159740:CDS 45.0%
TGTCAGACAGAATACCACCT+GGG + chr1_4:30951285-30951304 Msa0159740:CDS 45.0%
TGTGGCTGCAAATGTTCAAC+TGG - chr1_4:30951470-30951489 None:intergenic 45.0%
AAGGTTTGCCCCAGGTTAAA+AGG - chr1_4:30951602-30951621 None:intergenic 45.0%
GCGACTGAATTGAGGAAGTA+AGG - chr1_4:30951621-30951640 None:intergenic 45.0%
CAAATAACCAGTGGGGAAGT+TGG + chr1_4:30951849-30951868 Msa0159740:CDS 45.0%
AATCATTCCAACTTCCCCAC+TGG - chr1_4:30951859-30951878 None:intergenic 45.0%
TGCACTAATAGGCTCTCAGA+TGG + chr1_4:30952049-30952068 Msa0159740:three_prime_UTR 45.0%
GATTGCCGTTGACCATTTGA+TGG - chr1_4:30952223-30952242 None:intergenic 45.0%
TAAGCAAACAAGAGTGGGTG+AGG - chr1_4:30952245-30952264 None:intergenic 45.0%
ACCATAATAACCGCCAAGGT+CGG - chr1_4:30952370-30952389 None:intergenic 45.0%
ACTCACCATAATAACCGCCA+AGG - chr1_4:30952374-30952393 None:intergenic 45.0%
GAAGTTATAGGCCTTACTGG+TGG + chr1_4:30952643-30952662 Msa0159740:three_prime_UTR 45.0%
GCATGAATTTCCCACCAGTA+AGG - chr1_4:30952657-30952676 None:intergenic 45.0%
!! ACTATAATATAAAAAAAATT+TGG + chr1_4:30950620-30950639 Msa0159740:intron 5.0%
GCTTCAGATGCTGATCAGTC+AGG - chr1_4:30944987-30945006 None:intergenic 50.0%
! CATCTGAAGCCGTGCAAATG+TGG + chr1_4:30944997-30945016 Msa0159740:five_prime_UTR 50.0%
GGCTCATAAGGATGAAACCG+AGG + chr1_4:30945449-30945468 Msa0159740:five_prime_UTR 50.0%
CTATGGCAGCTAACTGTCGA+AGG + chr1_4:30945520-30945539 Msa0159740:five_prime_UTR 50.0%
GTCGAAGGTTGAGTTATGGC+TGG + chr1_4:30945535-30945554 Msa0159740:intron 50.0%
TCCACCAGCTACTTCAACGT+AGG + chr1_4:30945924-30945943 Msa0159740:intron 50.0%
CCACCAGCTACTTCAACGTA+GGG + chr1_4:30945925-30945944 Msa0159740:intron 50.0%
ACTCCCTACGTTGAAGTAGC+TGG - chr1_4:30945931-30945950 None:intergenic 50.0%
AGTCGGTAAAGCGGAGTGAA+GGG - chr1_4:30946656-30946675 None:intergenic 50.0%
AAGTCGGTAAAGCGGAGTGA+AGG - chr1_4:30946657-30946676 None:intergenic 50.0%
!! ACTCCGCTTTACCGACTTGT+AGG + chr1_4:30946659-30946678 Msa0159740:intron 50.0%
AAAAAGGGAATCCAGGCTGG+GGG - chr1_4:30946754-30946773 None:intergenic 50.0%
CAAAAAGGGAATCCAGGCTG+GGG - chr1_4:30946755-30946774 None:intergenic 50.0%
AGTCTCTATTGCTGCAAGGC+TGG - chr1_4:30946954-30946973 None:intergenic 50.0%
GGAGGTAAAACACTCCCTGA+AGG - chr1_4:30948011-30948030 None:intergenic 50.0%
!! TTAGGATCATCTGGTGGTGG+AGG - chr1_4:30948029-30948048 None:intergenic 50.0%
CATTACCAAGAGTTGGCTGC+AGG - chr1_4:30948298-30948317 None:intergenic 50.0%
CTGCAGCCAACTCTTGGTAA+TGG + chr1_4:30948296-30948315 Msa0159740:intron 50.0%
!!! CAGTACGGCTGCTGTTTTCA+TGG + chr1_4:30948363-30948382 Msa0159740:intron 50.0%
!!! TACGGCTGCTGTTTTCATGG+TGG + chr1_4:30948366-30948385 Msa0159740:intron 50.0%
ACTAGGGCAAGGTGTGTATC+TGG + chr1_4:30948565-30948584 Msa0159740:intron 50.0%
! ATTGATTCCCAAACCCTGCC+AGG + chr1_4:30948661-30948680 Msa0159740:five_prime_UTR 50.0%
TTGATTCCCAAACCCTGCCA+GGG + chr1_4:30948662-30948681 Msa0159740:five_prime_UTR 50.0%
! CTTTTCTTGACCAAGGCCCA+CGG - chr1_4:30948911-30948930 None:intergenic 50.0%
! GTTTCAAGTCGGGATGTGCA+TGG + chr1_4:30949000-30949019 Msa0159740:five_prime_UTR 50.0%
GGATGTGCATGGCTCATGTT+CGG + chr1_4:30949011-30949030 Msa0159740:five_prime_UTR 50.0%
ATCTTCCCAAAAGGCTGGTG+TGG - chr1_4:30949184-30949203 None:intergenic 50.0%
GCAGCGATAATTTAGCCTCC+AGG + chr1_4:30949259-30949278 Msa0159740:five_prime_UTR 50.0%
AAGGCTTCCCCGAATGATTC+TGG - chr1_4:30949359-30949378 None:intergenic 50.0%
! TTTTACTGAACCCTTGGGGC+AGG + chr1_4:30949386-30949405 Msa0159740:five_prime_UTR 50.0%
CTTCTCTAATCCTGCCCCAA+GGG - chr1_4:30949399-30949418 None:intergenic 50.0%
TCTTCTCTAATCCTGCCCCA+AGG - chr1_4:30949400-30949419 None:intergenic 50.0%
AGAGAAGACCGTGAAGAGTG+AGG + chr1_4:30949412-30949431 Msa0159740:five_prime_UTR 50.0%
GAGAAGACCGTGAAGAGTGA+GGG + chr1_4:30949413-30949432 Msa0159740:five_prime_UTR 50.0%
ACCAGTACCCTCACTCTTCA+CGG - chr1_4:30949423-30949442 None:intergenic 50.0%
! CAGCAATCATTTGGGGTTGC+TGG + chr1_4:30949675-30949694 Msa0159740:CDS 50.0%
GCAGGATGCCACAAGAAAAC+TGG - chr1_4:30950033-30950052 None:intergenic 50.0%
AGGTTGGCACTGTACAGTTG+AGG - chr1_4:30950587-30950606 None:intergenic 50.0%
ACTAAGTGGGGTAGGCTACA+TGG - chr1_4:30950921-30950940 None:intergenic 50.0%
ATGTAGCCTACCCCACTTAG+TGG + chr1_4:30950920-30950939 Msa0159740:intron 50.0%
TGTAGCCTACCCCACTTAGT+GGG + chr1_4:30950921-30950940 Msa0159740:intron 50.0%
CTTATCCCACTAAGTGGGGT+AGG - chr1_4:30950929-30950948 None:intergenic 50.0%
CTACCCCACTTAGTGGGATA+AGG + chr1_4:30950927-30950946 Msa0159740:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr1_4:30950935-30950954 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr1_4:30950932-30950951 Msa0159740:intron 50.0%
CTCATGCTTCAAGTCCACCT+GGG + chr1_4:30951255-30951274 Msa0159740:CDS 50.0%
TCTGACATTGCAAACCCAGG+TGG - chr1_4:30951272-30951291 None:intergenic 50.0%
CTGTCTGACATTGCAAACCC+AGG - chr1_4:30951275-30951294 None:intergenic 50.0%
! ATACCACCTGGGTTTTCTCG+CGG + chr1_4:30951296-30951315 Msa0159740:CDS 50.0%
! ACAGATGGAGGAGCATACTG+TGG - chr1_4:30951488-30951507 None:intergenic 50.0%
TGACCCTAGTAGGGGAATAG+TGG + chr1_4:30951556-30951575 Msa0159740:CDS 50.0%
CCTCCACTATTCCCCTACTA+GGG - chr1_4:30951562-30951581 None:intergenic 50.0%
TCCTCCACTATTCCCCTACT+AGG - chr1_4:30951563-30951582 None:intergenic 50.0%
! GTAGGGGAATAGTGGAGGAA+AGG + chr1_4:30951564-30951583 Msa0159740:CDS 50.0%
TTAGCTTCACTGCCAAGCAC+TGG + chr1_4:30952262-30952281 Msa0159740:three_prime_UTR 50.0%
!! ACTGCCAAGCACTGGAATCT+GGG + chr1_4:30952270-30952289 Msa0159740:three_prime_UTR 50.0%
! CAAGTGGATTTCGCAAGTGC+TGG - chr1_4:30952462-30952481 None:intergenic 50.0%
TGAGAGCGGAGAAGAGAGAG+TGG - chr1_4:30944098-30944117 None:intergenic 55.0%
GCCGTGCAAATGTGGCTATG+AGG + chr1_4:30945005-30945024 Msa0159740:five_prime_UTR 55.0%
TCATAAGGTGAACGGCAGGC+AGG - chr1_4:30945483-30945502 None:intergenic 55.0%
CCCTACGTTGAAGTAGCTGG+TGG - chr1_4:30945928-30945947 None:intergenic 55.0%
GGCAGCTCCATTGCTTGAAC+CGG - chr1_4:30948260-30948279 None:intergenic 55.0%
CACTTCCTGCAGCCAACTCT+TGG + chr1_4:30948290-30948309 Msa0159740:five_prime_UTR 55.0%
TGATTCCCAAACCCTGCCAG+GGG + chr1_4:30948663-30948682 Msa0159740:five_prime_UTR 55.0%
CGTGGGCCTTGGTCAAGAAA+AGG + chr1_4:30948909-30948928 Msa0159740:five_prime_UTR 55.0%
! ACCGTGAAGAGTGAGGGTAC+TGG + chr1_4:30949419-30949438 Msa0159740:five_prime_UTR 55.0%
GCGCAAAGCAGGTGCTTTGA+AGG - chr1_4:30949580-30949599 None:intergenic 55.0%
GCTCATGCTTCAAGTCCACC+TGG + chr1_4:30951254-30951273 Msa0159740:CDS 55.0%
! TACCACCTGGGTTTTCTCGC+GGG + chr1_4:30951297-30951316 Msa0159740:CDS 55.0%
CCCTAGTAGGGGAATAGTGG+AGG + chr1_4:30951559-30951578 Msa0159740:CDS 55.0%
GAGGAAGTAAGGTTTGCCCC+AGG - chr1_4:30951610-30951629 None:intergenic 55.0%
!! CACTGCCAAGCACTGGAATC+TGG + chr1_4:30952269-30952288 Msa0159740:three_prime_UTR 55.0%
AGGACCCAGATTCCAGTGCT+TGG - chr1_4:30952277-30952296 None:intergenic 55.0%
AATGTCAGGAGAGCCGACCT+TGG + chr1_4:30952354-30952373 Msa0159740:three_prime_UTR 55.0%
GCCGACCTTGGCGGTTATTA+TGG + chr1_4:30952366-30952385 Msa0159740:three_prime_UTR 55.0%
CGGAGAAGAGAGAGTGGTGG+TGG - chr1_4:30944092-30944111 None:intergenic 60.0%
GAGCGGAGAAGAGAGAGTGG+TGG - chr1_4:30944095-30944114 None:intergenic 60.0%
GTGAACGGCAGGCAGGACAA+CGG - chr1_4:30945476-30945495 None:intergenic 60.0%
AGCAACCCCTGGCAGGGTTT+GGG - chr1_4:30948671-30948690 None:intergenic 60.0%
AAGCAACCCCTGGCAGGGTT+TGG - chr1_4:30948672-30948691 None:intergenic 60.0%
! CTTTCGGTGCAAGCAACCCC+TGG - chr1_4:30948682-30948701 None:intergenic 60.0%
CAGGGGTTGCTTGCACCGAA+AGG + chr1_4:30948680-30948699 Msa0159740:five_prime_UTR 60.0%
CATGTGGTGCGGTGATCTCC+AGG - chr1_4:30948960-30948979 None:intergenic 60.0%
ACTCTCCCGCGAGAAAACCC+AGG - chr1_4:30951305-30951324 None:intergenic 60.0%
GGCTCTCAGATGGCAGTGTG+TGG + chr1_4:30952059-30952078 Msa0159740:three_prime_UTR 60.0%
GGTCAACTATGCCCCCAGCC+TGG + chr1_4:30946740-30946759 Msa0159740:intron 65.0%
GGTGCAAGCAACCCCTGGCA+GGG - chr1_4:30948677-30948696 None:intergenic 65.0%
TCAGCAGCTTCCGTGGGCCT+TGG + chr1_4:30948898-30948917 Msa0159740:intron 65.0%
CTCCCGCGAGAAAACCCAGG+TGG - chr1_4:30951302-30951321 None:intergenic 65.0%
GTCAGGAGAGCCGACCTTGG+CGG + chr1_4:30952357-30952376 Msa0159740:three_prime_UTR 65.0%
GCAGGCAGGACAACGGCCCT+CGG - chr1_4:30945469-30945488 None:intergenic 70.0%
CGGTGCAAGCAACCCCTGGC+AGG - chr1_4:30948678-30948697 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 30944006 30952902 30944006 ID=Msa0159740;Name=Msa0159740
chr1_4 mRNA 30944006 30952902 30944006 ID=Msa0159740-mRNA-1;Parent=Msa0159740;Name=Msa0159740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1837|1|1|1|0.78|0.66|15|708|340
chr1_4 exon 30944006 30944119 30944006 ID=Msa0159740-mRNA-1:exon:9823;Parent=Msa0159740-mRNA-1
chr1_4 exon 30944915 30945026 30944915 ID=Msa0159740-mRNA-1:exon:9824;Parent=Msa0159740-mRNA-1
chr1_4 exon 30945414 30945541 30945414 ID=Msa0159740-mRNA-1:exon:9825;Parent=Msa0159740-mRNA-1
chr1_4 exon 30945627 30945774 30945627 ID=Msa0159740-mRNA-1:exon:9826;Parent=Msa0159740-mRNA-1
chr1_4 exon 30945932 30946041 30945932 ID=Msa0159740-mRNA-1:exon:9827;Parent=Msa0159740-mRNA-1
chr1_4 exon 30946218 30946301 30946218 ID=Msa0159740-mRNA-1:exon:9828;Parent=Msa0159740-mRNA-1
chr1_4 exon 30946385 30946433 30946385 ID=Msa0159740-mRNA-1:exon:9829;Parent=Msa0159740-mRNA-1
chr1_4 exon 30946955 30947046 30946955 ID=Msa0159740-mRNA-1:exon:9830;Parent=Msa0159740-mRNA-1
chr1_4 exon 30947962 30948094 30947962 ID=Msa0159740-mRNA-1:exon:9831;Parent=Msa0159740-mRNA-1
chr1_4 exon 30948241 30948311 30948241 ID=Msa0159740-mRNA-1:exon:9832;Parent=Msa0159740-mRNA-1
chr1_4 exon 30948570 30948823 30948570 ID=Msa0159740-mRNA-1:exon:9833;Parent=Msa0159740-mRNA-1
chr1_4 exon 30948905 30949849 30948905 ID=Msa0159740-mRNA-1:exon:9834;Parent=Msa0159740-mRNA-1
chr1_4 exon 30951246 30951347 30951246 ID=Msa0159740-mRNA-1:exon:9835;Parent=Msa0159740-mRNA-1
chr1_4 exon 30951471 30952387 30951471 ID=Msa0159740-mRNA-1:exon:9836;Parent=Msa0159740-mRNA-1
chr1_4 exon 30952594 30952902 30952594 ID=Msa0159740-mRNA-1:exon:9837;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30944006 30944119 30944006 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30944915 30945026 30944915 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30945414 30945541 30945414 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30945627 30945774 30945627 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30945932 30946041 30945932 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30946218 30946301 30946218 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30946385 30946433 30946385 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30946955 30947046 30946955 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30947962 30948094 30947962 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30948241 30948311 30948241 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30948570 30948823 30948570 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 five_prime_UTR 30948905 30949446 30948905 ID=Msa0159740-mRNA-1:five_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 CDS 30949447 30949849 30949447 ID=Msa0159740-mRNA-1:cds;Parent=Msa0159740-mRNA-1
chr1_4 CDS 30951246 30951347 30951246 ID=Msa0159740-mRNA-1:cds;Parent=Msa0159740-mRNA-1
chr1_4 CDS 30951471 30951988 30951471 ID=Msa0159740-mRNA-1:cds;Parent=Msa0159740-mRNA-1
chr1_4 three_prime_UTR 30951989 30952387 30951989 ID=Msa0159740-mRNA-1:three_prime_utr;Parent=Msa0159740-mRNA-1
chr1_4 three_prime_UTR 30952594 30952902 30952594 ID=Msa0159740-mRNA-1:three_prime_utr;Parent=Msa0159740-mRNA-1
Gene Sequence

>Msa0159740

ATGTTGATAACAAGGTTTCTTCAGACGTCGGCGAAAAACAACATTATATCTAACATTTTGTCTTTGGAACTAGATGCATGGGAAGATTCAATAGTTAAGTTGTTGGATGAAAGTGATGAGCCATACACATCCTTCAAAGCACCTGCTTTGCGCAAAATCCAAGACAATAATCAGTCCAGGTTTTCCTTTGCCAGACAAAATGATTCCTTGAATAAAACCTCTGATTTGCAGCAATCATTTGGGGTTGCTGGACATGATCCTAAAGGGAATTATGCATCTGGTGGTTGTAATGGAAACAAAGACATGTTCGCTGTAAAACACCCATACGCTTTCCCATCAAGCAATTCTGTGCTATCAGATAAATTTGATGGAAGTCTGTCTTTGGCGCCCTCTAAATTTTCCATGGCAAAAGCTCATGCTTCAAGTCCACCTGGGTTTGCAATGTCAGACAGAATACCACCTGGGTTTTCTCGCGGGAGAGTAGAACAGAGTTGTAATAGTTCTGTTGAACATTTGCAGCCACAGTATGCTCCTCCATCTGTAAATATCAGCAGGATAGGAAATGTTGAGTTCAAGAATCCTATGGTATTTGACCCTAGTAGGGGAATAGTGGAGGAAAGGCTGAATAGTACACCTTTTAACCTGGGGCAAACCTTACTTCCTCAATTCAGTCGCAATGAAGATGATGCTAGACTTAAGCTGTTAATACAACAACAATCTACAGCTTCGCAGAATTCAAGACTTTCAGATCATATTGGAAATAGGTTTTCACCTCAAAGTGATGCTTATAGAACTAATTCGAGGTTTCTCGATCAATTTCAGTCTAACACACCATTTTCTGAACAACTGCATTCTCAACAGTTCAGTAGTAATATTCTTGGTTCAAATAACCAGTGGGGAAGTTGGAATGATTCCAATTATTTCAGTGGCCTGTCTATGTCTGAAGTATTGAATAATGAAATAGGGGGATTCAACAATTTCATGCCTAGTTATGAGAATATCAAGTTTAAGCACCTGAATTGA
Protein sequence

>Msa0159740

MLITRFLQTSAKNNIISNILSLELDAWEDSIVKLLDESDEPYTSFKAPALRKIQDNNQSRFSFARQNDSLNKTSDLQQSFGVAGHDPKGNYASGGCNGNKDMFAVKHPYAFPSSNSVLSDKFDGSLSLAPSKFSMAKAHASSPPGFAMSDRIPPGFSRGRVEQSCNSSVEHLQPQYAPPSVNISRIGNVEFKNPMVFDPSRGIVEERLNSTPFNLGQTLLPQFSRNEDDARLKLLIQQQSTASQNSRLSDHIGNRFSPQSDAYRTNSRFLDQFQSNTPFSEQLHSQQFSSNILGSNNQWGSWNDSNYFSGLSMSEVLNNEIGGFNNFMPSYENIKFKHLN*