AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0535020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535020 MtrunA17_Chr4g0008861 93.450 916 46 1 1 902 12 927 0.0 1678
Msa0535020 MtrunA17_Chr7g0240931 45.549 865 378 23 63 902 42 838 0.0 577
Msa0535020 MtrunA17_Chr4g0032351 35.603 514 271 15 434 902 378 876 1.32e-62 228
Msa0535020 MtrunA17_Chr2g0328721 35.071 422 226 10 512 902 511 915 1.04e-54 205
Msa0535020 MtrunA17_Chr1g0186181 23.988 346 195 10 574 854 254 596 3.00e-20 95.9
Msa0535020 MtrunA17_Chr5g0397401 26.902 368 226 11 517 851 195 552 1.16e-14 78.2
Msa0535020 MtrunA17_Chr8g0386851 24.561 513 242 21 517 902 235 729 1.13e-12 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0535020 AT5G01030.3 37.367 471 212 15 447 902 342 744 7.94e-71 249
Msa0535020 AT5G01030.1 37.367 471 212 15 447 902 342 744 7.94e-71 249
Msa0535020 AT5G01030.2 37.367 471 212 15 447 902 342 744 7.94e-71 249
Msa0535020 AT2G29510.1 34.316 475 263 10 448 902 394 839 7.51e-65 234
Msa0535020 AT5G59020.1 27.614 880 482 32 77 902 2 780 1.64e-55 206
Msa0535020 AT2G37930.1 34.052 464 209 15 447 902 169 543 1.59e-49 184
Msa0535020 AT2G37930.3 34.052 464 209 15 447 902 197 571 2.28e-49 184
Msa0535020 AT2G37930.4 34.052 464 209 15 447 902 197 571 2.28e-49 184
Msa0535020 AT2G37930.2 34.225 374 157 14 447 810 197 491 2.78e-36 144
Msa0535020 AT1G04490.9 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.5 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.6 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.3 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.7 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.2 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.1 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT1G04490.8 37.607 117 59 4 740 855 289 392 1.22e-19 92.8
Msa0535020 AT2G33360.2 40.517 116 62 4 743 856 325 435 1.97e-18 89.7
Msa0535020 AT2G33360.1 40.517 116 62 4 743 856 480 590 3.43e-18 89.7
Msa0535020 AT1G63520.1 34.899 149 73 4 705 851 351 477 5.94e-18 89.0
Msa0535020 AT1G04490.4 44.444 72 27 3 740 810 289 348 1.83e-12 70.5

Find 191 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTATGGCTATGTTTA+TGG 0.115170 4_1:-10830680 None:intergenic
CCAAGGAACCTGGTTGTTTC+TGG 0.121277 4_1:-10832697 None:intergenic
ACCAGACATCTTGTTTATTT+TGG 0.128745 4_1:-10831003 None:intergenic
ATTCACTGATTCAGTGAATT+TGG 0.158512 4_1:-10831774 None:intergenic
CCTTCTGAGGATATGGTATT+TGG 0.163098 4_1:+10829740 Msa0535020:CDS
AAGTCTTCTGCTGTTGTTAT+TGG 0.224622 4_1:-10832762 None:intergenic
GGTTAAAGAATATGTCTTAT+TGG 0.229796 4_1:+10831820 Msa0535020:CDS
CACTTCTCTTCGCAGTTTCC+CGG 0.247251 4_1:-10829958 None:intergenic
CGACTTGAAAGTGCAATTTC+AGG 0.278575 4_1:-10830873 None:intergenic
TATGAAACCTTCTGAGGATA+TGG 0.280831 4_1:+10829733 None:intergenic
TTCAACAATCAGTCATTTAC+AGG 0.283884 4_1:+10832643 Msa0535020:CDS
ACTTTGTTGCCGTTGAATAA+TGG 0.284490 4_1:+10832599 Msa0535020:CDS
AACGGATCAGACCGAATAAC+AGG 0.305934 4_1:+10830256 Msa0535020:CDS
TATTGGAACTTGGTTCCTTA+AGG 0.308974 4_1:-10832745 None:intergenic
AGTTCTACTGTTATTCTTCC+AGG 0.317642 4_1:+10831992 Msa0535020:CDS
GCACATGAGAAGAATGATTT+AGG 0.338212 4_1:+10831623 Msa0535020:CDS
TAACAACAGCAGAAGACTTC+AGG 0.340482 4_1:+10832766 Msa0535020:CDS
TGATGAAGCTAAGCAGAAAA+TGG 0.341705 4_1:+10830473 Msa0535020:CDS
AGACTACTTCGGCTTGATTC+TGG 0.342643 4_1:-10830804 None:intergenic
ATTCTTCCAGGTGGTGTACA+TGG 0.343997 4_1:+10832004 Msa0535020:CDS
AAAAGGATGTGTTAGACAAT+AGG 0.348011 4_1:+10831051 Msa0535020:CDS
CTGCTGTTGTTATTGGAACT+TGG 0.350911 4_1:-10832755 None:intergenic
GAATACCAGTTGCAGAAATC+TGG 0.350963 4_1:+10833081 Msa0535020:three_prime_UTR
AAACGACTAGTTAGATCTTC+TGG 0.351862 4_1:-10830130 None:intergenic
AAGTCAGCTCAGCAGTTTCT+TGG 0.352085 4_1:-10831118 None:intergenic
CTCATTCAGTTCTAAGAAAA+CGG 0.353278 4_1:+10830593 Msa0535020:CDS
GTTAAAGAATATGTCTTATT+GGG 0.356219 4_1:+10831821 Msa0535020:CDS
TACGTTTAAACTCTGCCAAC+AGG 0.363429 4_1:-10832830 None:intergenic
ATGTGCTGCTAAACTATTCT+TGG 0.364355 4_1:-10831606 None:intergenic
CTTCTCACTTCCTATCCTCT+TGG 0.365421 4_1:-10830349 None:intergenic
CAACTGGTATTCTAATTTGA+TGG 0.367002 4_1:-10833070 None:intergenic
ATTGGAACTTGGTTCCTTAA+GGG 0.372550 4_1:-10832744 None:intergenic
CAGTGACTCCTGAATCTTCT+AGG 0.374114 4_1:+10831276 Msa0535020:CDS
GCATCAGGCACGCACCATTC+AGG 0.384867 4_1:+10831395 Msa0535020:CDS
GGAAGTGCATCCCTGTTATT+CGG 0.392157 4_1:-10830267 None:intergenic
TCCCAACGCCTAGAAGATTC+AGG 0.392268 4_1:-10831284 None:intergenic
GTTGAGGATTAGCTAGTTCA+TGG 0.392662 4_1:+10832904 Msa0535020:three_prime_UTR
CAACGGCAACAAAGTGAAAT+GGG 0.394423 4_1:-10832591 None:intergenic
CACCTTCACACATGCTGTCC+AGG 0.397838 4_1:+10833036 Msa0535020:three_prime_UTR
GTGAATCAGTTGCCGGAGTC+AGG 0.398511 4_1:+10830645 Msa0535020:CDS
CTCTTGGATCCACTTCTAGA+AGG 0.401913 4_1:-10830333 None:intergenic
GATTATGCGATTGTGGTGGT+TGG 0.405472 4_1:+10832080 Msa0535020:CDS
TCAACGGCAACAAAGTGAAA+TGG 0.405989 4_1:-10832592 None:intergenic
CAGTTCTAAGAAAACGGGTT+CGG 0.406997 4_1:+10830599 Msa0535020:CDS
AAGTTTGTCTCTTCAAAGTC+AGG 0.408081 4_1:+10831251 Msa0535020:CDS
CAAGAGAAAGCTTTCAATGT+TGG 0.410712 4_1:+10830061 Msa0535020:CDS
TGGTAAGGTTTATAACTTCT+CGG 0.411590 4_1:-10832157 None:intergenic
ATTGGTCTCGACTTGAGAAC+TGG 0.413293 4_1:+10830092 Msa0535020:CDS
GGATCTAATAACCTCTTAAG+AGG 0.414021 4_1:-10831356 None:intergenic
GAGGGAAGTTTGCTACTTTG+TGG 0.414951 4_1:-10830288 None:intergenic
CAGAAGGAAATATTCGGAAC+CGG 0.417398 4_1:+10829939 Msa0535020:CDS
TGTCTGTTCCATCTCAGATA+TGG 0.417769 4_1:-10830544 None:intergenic
TCAGTTGCCGGAGTCAGGTT+TGG 0.418287 4_1:+10830650 Msa0535020:CDS
CTTCATCGTTAATCCATAGA+TGG 0.423295 4_1:+10832047 Msa0535020:CDS
TCCTGAATCTTCTAGGCGTT+GGG 0.424320 4_1:+10831283 Msa0535020:CDS
CTCCTGAATCTTCTAGGCGT+TGG 0.428185 4_1:+10831282 Msa0535020:CDS
TTCGACTTATCCGCACTCTT+CGG 0.428736 4_1:-10829857 None:intergenic
TTTAACCATATGCTGTCTCT+TGG 0.429134 4_1:-10831804 None:intergenic
CAAGATCAAGCCCTCTTAAG+AGG 0.431000 4_1:+10831345 Msa0535020:CDS
TTGGCGGTCCTTGATCTGTC+TGG 0.431959 4_1:-10831856 None:intergenic
AGAAGCTGCTTGCTTTGAAA+AGG 0.434192 4_1:+10831034 Msa0535020:CDS
ACAGGGGAAAGAGGTGGAAT+TGG 0.439580 4_1:-10832812 None:intergenic
TTATCCGCACTCTTCGGATT+CGG 0.440725 4_1:-10829851 None:intergenic
GCACAGATTCGTCCAGTTTG+AGG 0.440932 4_1:+10831444 Msa0535020:CDS
CCAGAAACAACCAGGTTCCT+TGG 0.442985 4_1:+10832697 Msa0535020:CDS
CACACCGATACTCCTCAAAC+TGG 0.446204 4_1:-10831456 None:intergenic
ATTATGCGATTGTGGTGGTT+GGG 0.446726 4_1:+10832081 Msa0535020:CDS
TCCATGGTCGGGATGAACTT+TGG 0.446909 4_1:-10831875 None:intergenic
ATTAAAAGAACTTCAGATGT+TGG 0.447536 4_1:+10830387 Msa0535020:CDS
CAGCATGTGTGAAGGTGAAA+TGG 0.448536 4_1:-10833030 None:intergenic
CAATATTACTTGGCTTGCTA+TGG 0.449056 4_1:-10830692 None:intergenic
GGCAGGGAAAACTTGATGAT+TGG 0.449690 4_1:+10830223 Msa0535020:intron
AGTTCTAAGAAAACGGGTTC+GGG 0.449744 4_1:+10830600 Msa0535020:CDS
TTAATCCATAGATGGAGAAC+CGG 0.450697 4_1:+10832055 Msa0535020:CDS
AGCATCCAGATTTCTGCAAC+TGG 0.451693 4_1:-10833086 None:intergenic
TCTGACTACTTTCACCTGAA+TGG 0.453420 4_1:-10831409 None:intergenic
TCAAAAGGTGAATCAGTTGC+CGG 0.455862 4_1:+10830638 Msa0535020:CDS
TCCAAAATAAACAAGATGTC+TGG 0.456526 4_1:+10831002 Msa0535020:CDS
TCATTCAGTTCTAAGAAAAC+GGG 0.456581 4_1:+10830594 Msa0535020:CDS
ATTCCACCTCTTTCCCCTGT+TGG 0.458904 4_1:+10832815 Msa0535020:CDS
TTGATGGACTATTACAATCC+TGG 0.464039 4_1:-10833054 None:intergenic
GATGAAGGTTCACCTCTGTT+TGG 0.466821 4_1:-10832031 None:intergenic
TTGCCAACGTAAACCTCCTC+TGG 0.467221 4_1:-10830843 None:intergenic
AGATCCTATACTGAAGCATA+AGG 0.467514 4_1:+10831373 Msa0535020:CDS
GAACTAAATTGTGAAGCTGC+AGG 0.481133 4_1:-10831227 None:intergenic
CAGCAGCAAGCTCCATGGTC+GGG 0.486385 4_1:-10831886 None:intergenic
CAAATCAACCAGACAGATCA+AGG 0.488665 4_1:+10831848 Msa0535020:CDS
AGCTTCAGCTTAAGTCGAAT+CGG 0.493820 4_1:+10831179 Msa0535020:CDS
ATACTGAAGCATAAGGCATC+AGG 0.494815 4_1:+10831380 Msa0535020:CDS
ATCATCTGAAGAACTTGAGT+CGG 0.495856 4_1:-10830739 None:intergenic
TAAAGCAGCACAATATTACT+TGG 0.496475 4_1:-10830702 None:intergenic
GGATAATTCAAGCAAAGAAA+AGG 0.498701 4_1:+10831304 Msa0535020:CDS
GGATAGGAAGTGAGAAGATG+AGG 0.500215 4_1:+10830355 Msa0535020:CDS
GATGCCTTATGCTTCAGTAT+AGG 0.505162 4_1:-10831377 None:intergenic
CTACTCATTTCCAAGGAACC+TGG 0.506906 4_1:-10832707 None:intergenic
TTCTCGGAATGTTTGAACTC+AGG 0.509206 4_1:-10832141 None:intergenic
AAACACATGTCTAATTTGCC+AGG 0.511224 4_1:+10830004 Msa0535020:CDS
AACAACAGCAGAAGACTTCA+GGG 0.512575 4_1:+10832767 Msa0535020:CDS
GAAATTTAGCATCGAACTCA+AGG 0.514910 4_1:+10830409 Msa0535020:CDS
AGTTGAAAACGATCCTGGTA+AGG 0.515550 4_1:-10832172 None:intergenic
TTCTTCCAGGTGGTGTACAT+GGG 0.515555 4_1:+10832005 Msa0535020:CDS
TTGTGATCTGCAAGAGACCT+TGG 0.518732 4_1:-10831520 None:intergenic
AGAATGCAGAAGGAAATATT+CGG 0.521230 4_1:+10829933 Msa0535020:CDS
TCATCTGAAGAACTTGAGTC+GGG 0.521685 4_1:-10830738 None:intergenic
GAACTCCAAGAGACAGCATA+TGG 0.521942 4_1:+10831799 Msa0535020:CDS
TGCTGAGCTGACTTCGCAGA+AGG 0.523784 4_1:+10831127 Msa0535020:CDS
GATAATGATATTATGAAGAA+AGG 0.524959 4_1:+10831959 Msa0535020:CDS
TGCAGAAATCTGGATGCTGC+TGG 0.526906 4_1:+10833091 Msa0535020:three_prime_UTR
GATTGTGGTGGTTGGGACAT+AGG 0.533688 4_1:+10832088 Msa0535020:CDS
TCATAAGTCCATATCTGAGA+TGG 0.534433 4_1:+10830536 Msa0535020:CDS
AGAATGCGAATCCAGTCAAA+AGG 0.534610 4_1:+10830623 Msa0535020:CDS
CATCTATGGATTAACGATGA+AGG 0.534839 4_1:-10832046 None:intergenic
TGTTTGAGATCACTGCATTG+AGG 0.536120 4_1:-10829899 None:intergenic
CATGAGTGTAGAGACCCTTA+AGG 0.537517 4_1:+10832730 Msa0535020:CDS
CGGTTTGAACCTTCTAGAAG+TGG 0.538283 4_1:+10830324 Msa0535020:CDS
GCGAAGAGAAGTGGAAATGA+AGG 0.539648 4_1:+10829968 Msa0535020:CDS
TGCTAAACTATTCTTGGTAG+CGG 0.539736 4_1:-10831600 None:intergenic
TCGTCCAGTTTGAGGAGTAT+CGG 0.539957 4_1:+10831452 Msa0535020:CDS
TTCCCTCTGAGAATGTCAAA+CGG 0.546337 4_1:+10830304 Msa0535020:CDS
CGGGAAACTGCGAAGAGAAG+TGG 0.549836 4_1:+10829959 Msa0535020:CDS
TTCGGAATTCCAAACATCAT+CGG 0.550049 4_1:+10830770 Msa0535020:CDS
AGAAGTGGATCCAAGAGGAT+AGG 0.552006 4_1:+10830339 Msa0535020:CDS
ACTCTGCCAACAGGGGAAAG+AGG 0.552468 4_1:-10832821 None:intergenic
CACTGATTCAGTGAATTTGG+AGG 0.552575 4_1:-10831771 None:intergenic
CATCGAACTCAAGGCACCGC+AGG 0.553778 4_1:+10830418 Msa0535020:CDS
ATAAGATCTTCAAATAGTTG+AGG 0.556492 4_1:+10832888 Msa0535020:three_prime_UTR
AACTAAATTGTGAAGCTGCA+GGG 0.556606 4_1:-10831226 None:intergenic
TAATCCATAGATGGAGAACC+GGG 0.557653 4_1:+10832056 Msa0535020:CDS
CTAAACCGACGGTTGTGAGA+TGG 0.558674 4_1:-10831158 None:intergenic
TCGAAGTCAAAGAGTGGTGT+TGG 0.559676 4_1:+10829875 Msa0535020:CDS
ACGTTTAAACTCTGCCAACA+GGG 0.559891 4_1:-10832829 None:intergenic
ATGGTCGGGATGAACTTTGG+CGG 0.561832 4_1:-10831872 None:intergenic
CTATCATCCAAACCTGACTC+CGG 0.563187 4_1:-10830657 None:intergenic
GTCATATGTTTCTATTCCAG+AGG 0.564694 4_1:+10830827 Msa0535020:CDS
TCTACTGTTATTCTTCCAGG+TGG 0.565467 4_1:+10831995 Msa0535020:CDS
AAGGCAAAGCAGAATGCAGA+AGG 0.565696 4_1:+10829923 Msa0535020:CDS
TCTCAGAAATTGAAGAAGAA+CGG 0.566407 4_1:-10830971 None:intergenic
TTGAGCACAAACTTAAACAA+AGG 0.567029 4_1:-10831557 None:intergenic
ATATGTTTCTATTCCAGAGG+AGG 0.571785 4_1:+10830830 Msa0535020:CDS
TTCGGACTTTGATTTACTTG+CGG 0.574214 4_1:-10829833 None:intergenic
GATGATTCGCCTCTACTGAA+TGG 0.574870 4_1:-10830157 None:intergenic
GGAAAACTTGATGATTGGAA+AGG 0.574969 4_1:+10830228 Msa0535020:CDS
GAGAAGTTATAAACCTTACC+AGG 0.578060 4_1:+10832159 Msa0535020:CDS
CGGTGTGAATGAATCACTGC+AGG 0.580996 4_1:+10831472 Msa0535020:CDS
TGAATTTATGAAACCTTCTG+AGG 0.581141 4_1:+10829727 None:intergenic
TCATTATGCAGTAGATAACC+TGG 0.581839 4_1:-10830022 None:intergenic
CTAGAAGATTCAGGAGTCAC+TGG 0.582953 4_1:-10831275 None:intergenic
TTAAGCTGCCAGAAACAACC+AGG 0.587761 4_1:+10832689 Msa0535020:CDS
CCAAATACCATATCCTCAGA+AGG 0.592197 4_1:-10829740 None:intergenic
ATGCAGTGATCTCAAACAGA+AGG 0.593803 4_1:+10829904 Msa0535020:CDS
ACAGCAGCAAGCTCCATGGT+CGG 0.596519 4_1:-10831887 None:intergenic
AACCGTTTGACATTCTCAGA+GGG 0.598569 4_1:-10830306 None:intergenic
GCTGAGCTGACTTCGCAGAA+GGG 0.602620 4_1:+10831128 Msa0535020:CDS
AGAAGGAAATATTCGGAACC+GGG 0.604142 4_1:+10829940 Msa0535020:CDS
CGTTTCACACCATTCAGTAG+AGG 0.604174 4_1:+10830148 Msa0535020:CDS
GCCAAAGTTCATCCCGACCA+TGG 0.607703 4_1:+10831874 Msa0535020:CDS
GATCTAATAACCTCTTAAGA+GGG 0.611308 4_1:-10831355 None:intergenic
ACTCATGCTACTCATTTCCA+AGG 0.617071 4_1:-10832714 None:intergenic
TCTACTGCATAATGATAGAG+TGG 0.617688 4_1:+10830030 Msa0535020:CDS
ATTCCAGAGGAGGTTTACGT+TGG 0.618088 4_1:+10830840 Msa0535020:CDS
ACCACAATCGCATAATCCCC+CGG 0.618179 4_1:-10832074 None:intergenic
AGCAAGGTATCATCAATCCA+AGG 0.618319 4_1:+10831503 Msa0535020:CDS
AACAACAGCAGCAAGCTCCA+TGG 0.623805 4_1:-10831891 None:intergenic
CTGCCAACAGGGGAAAGAGG+TGG 0.625772 4_1:-10832818 None:intergenic
AAACATATGACAGACTACTT+CGG 0.625938 4_1:-10830815 None:intergenic
CTTGAGTCGGGAATATCATG+TGG 0.628330 4_1:-10830726 None:intergenic
CAAATCCATCTCACAACCGT+CGG 0.629325 4_1:+10831153 Msa0535020:CDS
ATGATTGGAAAGGTTCGCAA+CGG 0.629860 4_1:+10830238 Msa0535020:CDS
GAAGCTAAGCAGAAAATGGA+GGG 0.635705 4_1:+10830477 Msa0535020:CDS
AGTGGTGGATGGATGAGTCA+CGG 0.636917 4_1:+10831689 Msa0535020:CDS
GAGTAGAATCCATTATTCAA+CGG 0.638175 4_1:-10832608 None:intergenic
TGAAGCTAAGCAGAAAATGG+AGG 0.642246 4_1:+10830476 Msa0535020:CDS
AAGTATGCTCAATCGCAGAA+CGG 0.651591 4_1:-10830899 None:intergenic
ATCCATAGATGGAGAACCGG+GGG 0.654635 4_1:+10832058 Msa0535020:CDS
GGTGACCCATGTACACCACC+TGG 0.655426 4_1:-10832010 None:intergenic
GTTGCTTGAGTTTCCACACG+AGG 0.656183 4_1:-10831921 None:intergenic
AAACCGTTTGACATTCTCAG+AGG 0.658195 4_1:-10830307 None:intergenic
TCAAGCAACGAACAATTGCA+TGG 0.659675 4_1:+10831935 Msa0535020:CDS
CGTTTAAACTCTGCCAACAG+GGG 0.660756 4_1:-10832828 None:intergenic
ACTGCAGGATGAAAAGAGCA+AGG 0.666537 4_1:+10831487 Msa0535020:CDS
GAACAGAAGACGAGATCCTG+CGG 0.678552 4_1:-10830434 None:intergenic
AACGGCAACAAAGTGAAATG+GGG 0.680624 4_1:-10832590 None:intergenic
GATAAGTCGAAGTCAAAGAG+TGG 0.681954 4_1:+10829869 Msa0535020:CDS
TTAAGCTGAAGCTAAACCGA+CGG 0.682871 4_1:-10831169 None:intergenic
ACGGATCAGACCGAATAACA+GGG 0.686080 4_1:+10830257 Msa0535020:CDS
CTTCTAGAAGTGGATCCAAG+AGG 0.703082 4_1:+10830334 Msa0535020:CDS
ATCCTGGACAGCATGTGTGA+AGG 0.709326 4_1:-10833038 None:intergenic
ACAACAGCAGAAGACTTCAG+GGG 0.720766 4_1:+10832768 Msa0535020:CDS
AAGTCCGAATCCGAAGAGTG+CGG 0.720839 4_1:+10829847 Msa0535020:CDS
GTACATGGGTCACCAAACAG+AGG 0.726146 4_1:+10832019 Msa0535020:CDS
AATCCATAGATGGAGAACCG+GGG 0.736635 4_1:+10832057 Msa0535020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATCATCTTTATTTTCATT+AGG - chr4_1:10830459-10830478 None:intergenic 20.0%
!! AATGAAATTAAGAAAAAGAG+TGG + chr4_1:10831671-10831690 Msa0535020:CDS 20.0%
!!! GTTAAAGAATATGTCTTATT+GGG + chr4_1:10831821-10831840 Msa0535020:CDS 20.0%
!! GATAATGATATTATGAAGAA+AGG + chr4_1:10831959-10831978 Msa0535020:CDS 20.0%
!! TTATAAAAATAGCTATGCAT+AGG + chr4_1:10832408-10832427 Msa0535020:intron 20.0%
!! TAATCATAACCATATGTAAA+TGG - chr4_1:10832542-10832561 None:intergenic 20.0%
! ATTAAAAGAACTTCAGATGT+TGG + chr4_1:10830387-10830406 Msa0535020:CDS 25.0%
! ACAGTAAAATCAAAAAGCAA+AGG + chr4_1:10830567-10830586 Msa0535020:CDS 25.0%
! CAGTAAAATCAAAAAGCAAA+GGG + chr4_1:10830568-10830587 Msa0535020:CDS 25.0%
! AGTAAAATCAAAAAGCAAAG+GGG + chr4_1:10830569-10830588 Msa0535020:CDS 25.0%
!!! AGAAGTTTCAGTTTTAAAGA+AGG + chr4_1:10831203-10831222 Msa0535020:CDS 25.0%
! TTGCAGATCACAATTAAAAA+TGG + chr4_1:10831530-10831549 Msa0535020:CDS 25.0%
! GGAAATAAAGAAAAAAGTTG+TGG + chr4_1:10831710-10831729 Msa0535020:CDS 25.0%
! GGTTAAAGAATATGTCTTAT+TGG + chr4_1:10831820-10831839 Msa0535020:CDS 25.0%
! AACAAGTCAAAAACAACTTA+TGG - chr4_1:10832314-10832333 None:intergenic 25.0%
!!! TGCATAGCTATTTTTATAAC+AGG - chr4_1:10832407-10832426 None:intergenic 25.0%
! TATAATTGTAGACTGTATTG+TGG + chr4_1:10832511-10832530 Msa0535020:intron 25.0%
! ATATGGTTATGATTACTTTC+AGG + chr4_1:10832547-10832566 Msa0535020:intron 25.0%
!! GGAATTGGTGTATATTTTAT+AGG - chr4_1:10832800-10832819 None:intergenic 25.0%
! ATAAGATCTTCAAATAGTTG+AGG + chr4_1:10832888-10832907 Msa0535020:three_prime_UTR 25.0%
!! TTTTACTCTTTAGACTTAAG+TGG - chr4_1:10832989-10833008 None:intergenic 25.0%
!! TTTTGTACAATGAATAAGAG+TGG - chr4_1:10833119-10833138 None:intergenic 25.0%
! GGTTTAGAATTCAAAAAGCT+CGG + chr4_1:10829761-10829780 Msa0535020:CDS 30.0%
AGAATGCAGAAGGAAATATT+CGG + chr4_1:10829933-10829952 Msa0535020:CDS 30.0%
!! TCAATGTTGGTGTTTTAGAT+TGG + chr4_1:10830074-10830093 Msa0535020:CDS 30.0%
! GATTTCTCTCTATTTTCTTG+TGG - chr4_1:10830518-10830537 None:intergenic 30.0%
!! CTCATTCAGTTCTAAGAAAA+CGG + chr4_1:10830593-10830612 Msa0535020:CDS 30.0%
!! TCATTCAGTTCTAAGAAAAC+GGG + chr4_1:10830594-10830613 Msa0535020:CDS 30.0%
TAAAGCAGCACAATATTACT+TGG - chr4_1:10830705-10830724 None:intergenic 30.0%
! CAAGTTCTTCAGATGATTTT+CGG + chr4_1:10830745-10830764 Msa0535020:CDS 30.0%
AAACATATGACAGACTACTT+CGG - chr4_1:10830818-10830837 None:intergenic 30.0%
! ATTGAGCATACTTCTTTTTC+TGG + chr4_1:10830909-10830928 Msa0535020:CDS 30.0%
TCTCAGAAATTGAAGAAGAA+CGG - chr4_1:10830974-10830993 None:intergenic 30.0%
TCCAAAATAAACAAGATGTC+TGG + chr4_1:10831002-10831021 Msa0535020:CDS 30.0%
!! ACCAGACATCTTGTTTATTT+TGG - chr4_1:10831006-10831025 None:intergenic 30.0%
AAAAGGATGTGTTAGACAAT+AGG + chr4_1:10831051-10831070 Msa0535020:CDS 30.0%
GGATAATTCAAGCAAAGAAA+AGG + chr4_1:10831304-10831323 Msa0535020:CDS 30.0%
GATCTAATAACCTCTTAAGA+GGG - chr4_1:10831358-10831377 None:intergenic 30.0%
TTGAGCACAAACTTAAACAA+AGG - chr4_1:10831560-10831579 None:intergenic 30.0%
GAAATTAAGAAAAAGAGTGG+TGG + chr4_1:10831674-10831693 Msa0535020:CDS 30.0%
!! ATTCACTGATTCAGTGAATT+TGG - chr4_1:10831777-10831796 None:intergenic 30.0%
TGGTAAGGTTTATAACTTCT+CGG - chr4_1:10832160-10832179 None:intergenic 30.0%
! TCGTTTTCAACTTTTTGTTC+AGG + chr4_1:10832183-10832202 Msa0535020:CDS 30.0%
TAAACCTTCTACATTCTACT+TGG + chr4_1:10832208-10832227 Msa0535020:intron 30.0%
AAACCTTCTACATTCTACTT+GGG + chr4_1:10832209-10832228 Msa0535020:intron 30.0%
!!! GCTTTTTTGAGTTTATCTAC+TGG + chr4_1:10832246-10832265 Msa0535020:intron 30.0%
GAGTAGAATCCATTATTCAA+CGG - chr4_1:10832611-10832630 None:intergenic 30.0%
TTCAACAATCAGTCATTTAC+AGG + chr4_1:10832643-10832662 Msa0535020:CDS 30.0%
CAACTGGTATTCTAATTTGA+TGG - chr4_1:10833073-10833092 None:intergenic 30.0%
! TTCGGACTTTGATTTACTTG+CGG - chr4_1:10829836-10829855 None:intergenic 35.0%
! AAACACATGTCTAATTTGCC+AGG + chr4_1:10830004-10830023 Msa0535020:CDS 35.0%
TCATTATGCAGTAGATAACC+TGG - chr4_1:10830025-10830044 None:intergenic 35.0%
TCTACTGCATAATGATAGAG+TGG + chr4_1:10830030-10830049 Msa0535020:CDS 35.0%
CAAGAGAAAGCTTTCAATGT+TGG + chr4_1:10830061-10830080 Msa0535020:CDS 35.0%
! AAACGACTAGTTAGATCTTC+TGG - chr4_1:10830133-10830152 None:intergenic 35.0%
!!! ACTGGTGGATGATTTTGATT+TGG - chr4_1:10830197-10830216 None:intergenic 35.0%
! GGAAAACTTGATGATTGGAA+AGG + chr4_1:10830228-10830247 Msa0535020:CDS 35.0%
! GAAATTTAGCATCGAACTCA+AGG + chr4_1:10830409-10830428 Msa0535020:CDS 35.0%
TGATGAAGCTAAGCAGAAAA+TGG + chr4_1:10830473-10830492 Msa0535020:CDS 35.0%
TCATAAGTCCATATCTGAGA+TGG + chr4_1:10830536-10830555 Msa0535020:CDS 35.0%
!! CAATATTACTTGGCTTGCTA+TGG - chr4_1:10830695-10830714 None:intergenic 35.0%
ATCATCTGAAGAACTTGAGT+CGG - chr4_1:10830742-10830761 None:intergenic 35.0%
! TTCAGATGATTTTCGGCTTT+CGG + chr4_1:10830752-10830771 Msa0535020:CDS 35.0%
TTCGGAATTCCAAACATCAT+CGG + chr4_1:10830770-10830789 Msa0535020:CDS 35.0%
! GATTTTCATCCGATGATGTT+TGG - chr4_1:10830782-10830801 None:intergenic 35.0%
! GTCATATGTTTCTATTCCAG+AGG + chr4_1:10830827-10830846 Msa0535020:CDS 35.0%
! ATATGTTTCTATTCCAGAGG+AGG + chr4_1:10830830-10830849 Msa0535020:CDS 35.0%
AACTAAATTGTGAAGCTGCA+GGG - chr4_1:10831229-10831248 None:intergenic 35.0%
AAGTTTGTCTCTTCAAAGTC+AGG + chr4_1:10831251-10831270 Msa0535020:CDS 35.0%
GGATCTAATAACCTCTTAAG+AGG - chr4_1:10831359-10831378 None:intergenic 35.0%
AGATCCTATACTGAAGCATA+AGG + chr4_1:10831373-10831392 Msa0535020:CDS 35.0%
TGCTAAACTATTCTTGGTAG+CGG - chr4_1:10831603-10831622 None:intergenic 35.0%
! ATGTGCTGCTAAACTATTCT+TGG - chr4_1:10831609-10831628 None:intergenic 35.0%
GCACATGAGAAGAATGATTT+AGG + chr4_1:10831623-10831642 Msa0535020:CDS 35.0%
! TTAAGAAAAAGAGTGGTGGA+TGG + chr4_1:10831678-10831697 Msa0535020:CDS 35.0%
TTTAACCATATGCTGTCTCT+TGG - chr4_1:10831807-10831826 None:intergenic 35.0%
AGTTCTACTGTTATTCTTCC+AGG + chr4_1:10831992-10832011 Msa0535020:CDS 35.0%
! CATCTATGGATTAACGATGA+AGG - chr4_1:10832049-10832068 None:intergenic 35.0%
CTTCATCGTTAATCCATAGA+TGG + chr4_1:10832047-10832066 Msa0535020:CDS 35.0%
TTAATCCATAGATGGAGAAC+CGG + chr4_1:10832055-10832074 Msa0535020:CDS 35.0%
GAGAAGTTATAAACCTTACC+AGG + chr4_1:10832159-10832178 Msa0535020:CDS 35.0%
CAAAAAGTTGAAAACGATCC+TGG - chr4_1:10832180-10832199 None:intergenic 35.0%
AACCTTCTACATTCTACTTG+GGG + chr4_1:10832210-10832229 Msa0535020:intron 35.0%
TAAGCACTTGTGAAACTAAC+TGG + chr4_1:10832271-10832290 Msa0535020:intron 35.0%
AAGCACTTGTGAAACTAACT+GGG + chr4_1:10832272-10832291 Msa0535020:intron 35.0%
ATGTCATCATGCACTTTGTT+TGG - chr4_1:10832484-10832503 None:intergenic 35.0%
GTGGATACTCCATTTACATA+TGG + chr4_1:10832530-10832549 Msa0535020:intron 35.0%
GGTTATGATTACTTTCAGGA+AGG + chr4_1:10832551-10832570 Msa0535020:intron 35.0%
ACTTTGTTGCCGTTGAATAA+TGG + chr4_1:10832599-10832618 Msa0535020:CDS 35.0%
ATTGGAACTTGGTTCCTTAA+GGG - chr4_1:10832747-10832766 None:intergenic 35.0%
TATTGGAACTTGGTTCCTTA+AGG - chr4_1:10832748-10832767 None:intergenic 35.0%
AAGTCTTCTGCTGTTGTTAT+TGG - chr4_1:10832765-10832784 None:intergenic 35.0%
!! TTGATGGACTATTACAATCC+TGG - chr4_1:10833057-10833076 None:intergenic 35.0%
CCAAATACCATATCCTCAGA+AGG - chr4_1:10829743-10829762 None:intergenic 40.0%
! CCTTCTGAGGATATGGTATT+TGG + chr4_1:10829740-10829759 Msa0535020:CDS 40.0%
TCAAAAAGCTCGGCTCAAAA+CGG + chr4_1:10829771-10829790 Msa0535020:CDS 40.0%
GATAAGTCGAAGTCAAAGAG+TGG + chr4_1:10829869-10829888 Msa0535020:CDS 40.0%
! TGTTTGAGATCACTGCATTG+AGG - chr4_1:10829902-10829921 None:intergenic 40.0%
ATGCAGTGATCTCAAACAGA+AGG + chr4_1:10829904-10829923 Msa0535020:CDS 40.0%
CAGAAGGAAATATTCGGAAC+CGG + chr4_1:10829939-10829958 Msa0535020:CDS 40.0%
AGAAGGAAATATTCGGAACC+GGG + chr4_1:10829940-10829959 Msa0535020:CDS 40.0%
!!! GGTGGATGATTTTGATTTGG+TGG - chr4_1:10830194-10830213 None:intergenic 40.0%
AAATCATCCACCAGTGTTAG+TGG + chr4_1:10830202-10830221 Msa0535020:intron 40.0%
ATGATTGGAAAGGTTCGCAA+CGG + chr4_1:10830238-10830257 Msa0535020:CDS 40.0%
! TTCCCTCTGAGAATGTCAAA+CGG + chr4_1:10830304-10830323 Msa0535020:CDS 40.0%
AACCGTTTGACATTCTCAGA+GGG - chr4_1:10830309-10830328 None:intergenic 40.0%
AAACCGTTTGACATTCTCAG+AGG - chr4_1:10830310-10830329 None:intergenic 40.0%
TGAAGCTAAGCAGAAAATGG+AGG + chr4_1:10830476-10830495 Msa0535020:CDS 40.0%
GAAGCTAAGCAGAAAATGGA+GGG + chr4_1:10830477-10830496 Msa0535020:CDS 40.0%
TGTCTGTTCCATCTCAGATA+TGG - chr4_1:10830547-10830566 None:intergenic 40.0%
!! CAGTTCTAAGAAAACGGGTT+CGG + chr4_1:10830599-10830618 Msa0535020:CDS 40.0%
!! AGTTCTAAGAAAACGGGTTC+GGG + chr4_1:10830600-10830619 Msa0535020:CDS 40.0%
AGAATGCGAATCCAGTCAAA+AGG + chr4_1:10830623-10830642 Msa0535020:CDS 40.0%
!! CAACTGATTCACCTTTTGAC+TGG - chr4_1:10830637-10830656 None:intergenic 40.0%
TCAAAAGGTGAATCAGTTGC+CGG + chr4_1:10830638-10830657 Msa0535020:CDS 40.0%
!! GCTTGCTATGGCTATGTTTA+TGG - chr4_1:10830683-10830702 None:intergenic 40.0%
TCATCTGAAGAACTTGAGTC+GGG - chr4_1:10830741-10830760 None:intergenic 40.0%
! CGACTTGAAAGTGCAATTTC+AGG - chr4_1:10830876-10830895 None:intergenic 40.0%
AAGTATGCTCAATCGCAGAA+CGG - chr4_1:10830902-10830921 None:intergenic 40.0%
!! AGAAGCTGCTTGCTTTGAAA+AGG + chr4_1:10831034-10831053 Msa0535020:CDS 40.0%
TTAAGCTGAAGCTAAACCGA+CGG - chr4_1:10831172-10831191 None:intergenic 40.0%
AGCTTCAGCTTAAGTCGAAT+CGG + chr4_1:10831179-10831198 Msa0535020:CDS 40.0%
GAACTAAATTGTGAAGCTGC+AGG - chr4_1:10831230-10831249 None:intergenic 40.0%
GATGCCTTATGCTTCAGTAT+AGG - chr4_1:10831380-10831399 None:intergenic 40.0%
! ATACTGAAGCATAAGGCATC+AGG + chr4_1:10831380-10831399 Msa0535020:CDS 40.0%
TCTGACTACTTTCACCTGAA+TGG - chr4_1:10831412-10831431 None:intergenic 40.0%
! AGCAAGGTATCATCAATCCA+AGG + chr4_1:10831503-10831522 Msa0535020:CDS 40.0%
!! CACTGATTCAGTGAATTTGG+AGG - chr4_1:10831774-10831793 None:intergenic 40.0%
CAAATCAACCAGACAGATCA+AGG + chr4_1:10831848-10831867 Msa0535020:CDS 40.0%
TCAAGCAACGAACAATTGCA+TGG + chr4_1:10831935-10831954 Msa0535020:CDS 40.0%
TCTACTGTTATTCTTCCAGG+TGG + chr4_1:10831995-10832014 Msa0535020:CDS 40.0%
TAATCCATAGATGGAGAACC+GGG + chr4_1:10832056-10832075 Msa0535020:CDS 40.0%
ATTATGCGATTGTGGTGGTT+GGG + chr4_1:10832081-10832100 Msa0535020:CDS 40.0%
TTCTCGGAATGTTTGAACTC+AGG - chr4_1:10832144-10832163 None:intergenic 40.0%
AGTTGAAAACGATCCTGGTA+AGG - chr4_1:10832175-10832194 None:intergenic 40.0%
CAAAGTGCATGATGACATTG+TGG + chr4_1:10832486-10832505 Msa0535020:intron 40.0%
AACGGCAACAAAGTGAAATG+GGG - chr4_1:10832593-10832612 None:intergenic 40.0%
CAACGGCAACAAAGTGAAAT+GGG - chr4_1:10832594-10832613 None:intergenic 40.0%
TCAACGGCAACAAAGTGAAA+TGG - chr4_1:10832595-10832614 None:intergenic 40.0%
ACTCATGCTACTCATTTCCA+AGG - chr4_1:10832717-10832736 None:intergenic 40.0%
! CTGCTGTTGTTATTGGAACT+TGG - chr4_1:10832758-10832777 None:intergenic 40.0%
TAACAACAGCAGAAGACTTC+AGG + chr4_1:10832766-10832785 Msa0535020:CDS 40.0%
AACAACAGCAGAAGACTTCA+GGG + chr4_1:10832767-10832786 Msa0535020:CDS 40.0%
ACGTTTAAACTCTGCCAACA+GGG - chr4_1:10832832-10832851 None:intergenic 40.0%
TACGTTTAAACTCTGCCAAC+AGG - chr4_1:10832833-10832852 None:intergenic 40.0%
!! GTTGAGGATTAGCTAGTTCA+TGG + chr4_1:10832904-10832923 Msa0535020:three_prime_UTR 40.0%
GAATACCAGTTGCAGAAATC+TGG + chr4_1:10833081-10833100 Msa0535020:three_prime_UTR 40.0%
TTATCCGCACTCTTCGGATT+CGG - chr4_1:10829854-10829873 None:intergenic 45.0%
TTCGACTTATCCGCACTCTT+CGG - chr4_1:10829860-10829879 None:intergenic 45.0%
TCGAAGTCAAAGAGTGGTGT+TGG + chr4_1:10829875-10829894 Msa0535020:CDS 45.0%
AAGGCAAAGCAGAATGCAGA+AGG + chr4_1:10829923-10829942 Msa0535020:CDS 45.0%
GCGAAGAGAAGTGGAAATGA+AGG + chr4_1:10829968-10829987 Msa0535020:CDS 45.0%
! ATTGGTCTCGACTTGAGAAC+TGG + chr4_1:10830092-10830111 Msa0535020:CDS 45.0%
CGTTTCACACCATTCAGTAG+AGG + chr4_1:10830148-10830167 Msa0535020:CDS 45.0%
GATGATTCGCCTCTACTGAA+TGG - chr4_1:10830160-10830179 None:intergenic 45.0%
! GGCAGGGAAAACTTGATGAT+TGG + chr4_1:10830223-10830242 Msa0535020:intron 45.0%
AACGGATCAGACCGAATAAC+AGG + chr4_1:10830256-10830275 Msa0535020:CDS 45.0%
ACGGATCAGACCGAATAACA+GGG + chr4_1:10830257-10830276 Msa0535020:CDS 45.0%
! GGAAGTGCATCCCTGTTATT+CGG - chr4_1:10830270-10830289 None:intergenic 45.0%
!! GAGGGAAGTTTGCTACTTTG+TGG - chr4_1:10830291-10830310 None:intergenic 45.0%
! CGGTTTGAACCTTCTAGAAG+TGG + chr4_1:10830324-10830343 Msa0535020:CDS 45.0%
CTCTTGGATCCACTTCTAGA+AGG - chr4_1:10830336-10830355 None:intergenic 45.0%
! CTTCTAGAAGTGGATCCAAG+AGG + chr4_1:10830334-10830353 Msa0535020:CDS 45.0%
AGAAGTGGATCCAAGAGGAT+AGG + chr4_1:10830339-10830358 Msa0535020:CDS 45.0%
CTTCTCACTTCCTATCCTCT+TGG - chr4_1:10830352-10830371 None:intergenic 45.0%
GGATAGGAAGTGAGAAGATG+AGG + chr4_1:10830355-10830374 Msa0535020:CDS 45.0%
CTATCATCCAAACCTGACTC+CGG - chr4_1:10830660-10830679 None:intergenic 45.0%
CTTGAGTCGGGAATATCATG+TGG - chr4_1:10830729-10830748 None:intergenic 45.0%
! AGACTACTTCGGCTTGATTC+TGG - chr4_1:10830807-10830826 None:intergenic 45.0%
ATTCCAGAGGAGGTTTACGT+TGG + chr4_1:10830840-10830859 Msa0535020:CDS 45.0%
AAGTCAGCTCAGCAGTTTCT+TGG - chr4_1:10831121-10831140 None:intergenic 45.0%
CAAATCCATCTCACAACCGT+CGG + chr4_1:10831153-10831172 Msa0535020:CDS 45.0%
CTAGAAGATTCAGGAGTCAC+TGG - chr4_1:10831278-10831297 None:intergenic 45.0%
CAGTGACTCCTGAATCTTCT+AGG + chr4_1:10831276-10831295 Msa0535020:CDS 45.0%
TCCTGAATCTTCTAGGCGTT+GGG + chr4_1:10831283-10831302 Msa0535020:CDS 45.0%
CAAGATCAAGCCCTCTTAAG+AGG + chr4_1:10831345-10831364 Msa0535020:CDS 45.0%
! TCGTCCAGTTTGAGGAGTAT+CGG + chr4_1:10831452-10831471 Msa0535020:CDS 45.0%
ACTGCAGGATGAAAAGAGCA+AGG + chr4_1:10831487-10831506 Msa0535020:CDS 45.0%
TTGTGATCTGCAAGAGACCT+TGG - chr4_1:10831523-10831542 None:intergenic 45.0%
GAACTCCAAGAGACAGCATA+TGG + chr4_1:10831799-10831818 Msa0535020:CDS 45.0%
!!! GTTGTTTTTGAGACCTCGTG+TGG + chr4_1:10831908-10831927 Msa0535020:CDS 45.0%
ATTCTTCCAGGTGGTGTACA+TGG + chr4_1:10832004-10832023 Msa0535020:CDS 45.0%
TTCTTCCAGGTGGTGTACAT+GGG + chr4_1:10832005-10832024 Msa0535020:CDS 45.0%
GATGAAGGTTCACCTCTGTT+TGG - chr4_1:10832034-10832053 None:intergenic 45.0%
AATCCATAGATGGAGAACCG+GGG + chr4_1:10832057-10832076 Msa0535020:CDS 45.0%
GATTATGCGATTGTGGTGGT+TGG + chr4_1:10832080-10832099 Msa0535020:CDS 45.0%
AGCCCCAAGTAGAATGTAGA+AGG - chr4_1:10832215-10832234 None:intergenic 45.0%
! TACTTGGGGCTTGTTTCGAT+TGG + chr4_1:10832224-10832243 Msa0535020:intron 45.0%
TTAAGCTGCCAGAAACAACC+AGG + chr4_1:10832689-10832708 Msa0535020:CDS 45.0%
CTACTCATTTCCAAGGAACC+TGG - chr4_1:10832710-10832729 None:intergenic 45.0%
CATGAGTGTAGAGACCCTTA+AGG + chr4_1:10832730-10832749 Msa0535020:CDS 45.0%
ACAACAGCAGAAGACTTCAG+GGG + chr4_1:10832768-10832787 Msa0535020:CDS 45.0%
CGTTTAAACTCTGCCAACAG+GGG - chr4_1:10832831-10832850 None:intergenic 45.0%
CAGCATGTGTGAAGGTGAAA+TGG - chr4_1:10833033-10833052 None:intergenic 45.0%
AGCATCCAGATTTCTGCAAC+TGG - chr4_1:10833089-10833108 None:intergenic 45.0%
AAGTCCGAATCCGAAGAGTG+CGG + chr4_1:10829847-10829866 Msa0535020:CDS 50.0%
CACTTCTCTTCGCAGTTTCC+CGG - chr4_1:10829961-10829980 None:intergenic 50.0%
ATCCACCAGTGTTAGTGGCA+GGG + chr4_1:10830207-10830226 Msa0535020:intron 50.0%
! GTTTTCCCTGCCACTAACAC+TGG - chr4_1:10830215-10830234 None:intergenic 50.0%
GAACAGAAGACGAGATCCTG+CGG - chr4_1:10830437-10830456 None:intergenic 50.0%
TTGCCAACGTAAACCTCCTC+TGG - chr4_1:10830846-10830865 None:intergenic 50.0%
CTAAACCGACGGTTGTGAGA+TGG - chr4_1:10831161-10831180 None:intergenic 50.0%
CTCCTGAATCTTCTAGGCGT+TGG + chr4_1:10831282-10831301 Msa0535020:CDS 50.0%
TCCCAACGCCTAGAAGATTC+AGG - chr4_1:10831287-10831306 None:intergenic 50.0%
GCACAGATTCGTCCAGTTTG+AGG + chr4_1:10831444-10831463 Msa0535020:CDS 50.0%
CACACCGATACTCCTCAAAC+TGG - chr4_1:10831459-10831478 None:intergenic 50.0%
CGGTGTGAATGAATCACTGC+AGG + chr4_1:10831472-10831491 Msa0535020:CDS 50.0%
!! AGTGGTGGATGGATGAGTCA+CGG + chr4_1:10831689-10831708 Msa0535020:CDS 50.0%
ATGGTCGGGATGAACTTTGG+CGG - chr4_1:10831875-10831894 None:intergenic 50.0%
TCCATGGTCGGGATGAACTT+TGG - chr4_1:10831878-10831897 None:intergenic 50.0%
AACAACAGCAGCAAGCTCCA+TGG - chr4_1:10831894-10831913 None:intergenic 50.0%
GTTGCTTGAGTTTCCACACG+AGG - chr4_1:10831924-10831943 None:intergenic 50.0%
GTACATGGGTCACCAAACAG+AGG + chr4_1:10832019-10832038 Msa0535020:CDS 50.0%
ATCCATAGATGGAGAACCGG+GGG + chr4_1:10832058-10832077 Msa0535020:CDS 50.0%
ACCACAATCGCATAATCCCC+CGG - chr4_1:10832077-10832096 None:intergenic 50.0%
GATTGTGGTGGTTGGGACAT+AGG + chr4_1:10832088-10832107 Msa0535020:CDS 50.0%
! CCAAGGAACCTGGTTGTTTC+TGG - chr4_1:10832700-10832719 None:intergenic 50.0%
CCAGAAACAACCAGGTTCCT+TGG + chr4_1:10832697-10832716 Msa0535020:CDS 50.0%
ACAGGGGAAAGAGGTGGAAT+TGG - chr4_1:10832815-10832834 None:intergenic 50.0%
ATTCCACCTCTTTCCCCTGT+TGG + chr4_1:10832815-10832834 Msa0535020:CDS 50.0%
ATCCTGGACAGCATGTGTGA+AGG - chr4_1:10833041-10833060 None:intergenic 50.0%
TGCAGAAATCTGGATGCTGC+TGG + chr4_1:10833091-10833110 Msa0535020:three_prime_UTR 50.0%
CGGGAAACTGCGAAGAGAAG+TGG + chr4_1:10829959-10829978 Msa0535020:CDS 55.0%
CATCCACCAGTGTTAGTGGC+AGG + chr4_1:10830206-10830225 Msa0535020:intron 55.0%
TTCCCTGCCACTAACACTGG+TGG - chr4_1:10830212-10830231 None:intergenic 55.0%
GTGAATCAGTTGCCGGAGTC+AGG + chr4_1:10830645-10830664 Msa0535020:CDS 55.0%
TCAGTTGCCGGAGTCAGGTT+TGG + chr4_1:10830650-10830669 Msa0535020:CDS 55.0%
! TGCTGAGCTGACTTCGCAGA+AGG + chr4_1:10831127-10831146 Msa0535020:CDS 55.0%
! GCTGAGCTGACTTCGCAGAA+GGG + chr4_1:10831128-10831147 Msa0535020:CDS 55.0%
TTGGCGGTCCTTGATCTGTC+TGG - chr4_1:10831859-10831878 None:intergenic 55.0%
GCCAAAGTTCATCCCGACCA+TGG + chr4_1:10831874-10831893 Msa0535020:CDS 55.0%
ACAGCAGCAAGCTCCATGGT+CGG - chr4_1:10831890-10831909 None:intergenic 55.0%
ATCCCCCGGTTCTCCATCTA+TGG - chr4_1:10832063-10832082 None:intergenic 55.0%
ACCGGGGGATTATGCGATTG+TGG + chr4_1:10832073-10832092 Msa0535020:CDS 55.0%
GGGGGATTATGCGATTGTGG+TGG + chr4_1:10832076-10832095 Msa0535020:CDS 55.0%
ACTCTGCCAACAGGGGAAAG+AGG - chr4_1:10832824-10832843 None:intergenic 55.0%
CACCTTCACACATGCTGTCC+AGG + chr4_1:10833036-10833055 Msa0535020:three_prime_UTR 55.0%
!! CATCGAACTCAAGGCACCGC+AGG + chr4_1:10830418-10830437 Msa0535020:CDS 60.0%
GCATCAGGCACGCACCATTC+AGG + chr4_1:10831395-10831414 Msa0535020:CDS 60.0%
CAGCAGCAAGCTCCATGGTC+GGG - chr4_1:10831889-10831908 None:intergenic 60.0%
GGTGACCCATGTACACCACC+TGG - chr4_1:10832013-10832032 None:intergenic 60.0%
CTGCCAACAGGGGAAAGAGG+TGG - chr4_1:10832821-10832840 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 10829734 10833165 10829734 ID=Msa0535020;Name=Msa0535020
chr4_1 mRNA 10829734 10833165 10829734 ID=Msa0535020-mRNA-1;Parent=Msa0535020;Name=Msa0535020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|1|1|1|3|318|902
chr4_1 exon 10829734 10830186 10829734 ID=Msa0535020-mRNA-1:exon:3494;Parent=Msa0535020-mRNA-1
chr4_1 exon 10830228 10832204 10830228 ID=Msa0535020-mRNA-1:exon:3495;Parent=Msa0535020-mRNA-1
chr4_1 exon 10832569 10833165 10832569 ID=Msa0535020-mRNA-1:exon:3496;Parent=Msa0535020-mRNA-1
chr4_1 CDS 10829734 10830186 10829734 ID=Msa0535020-mRNA-1:cds;Parent=Msa0535020-mRNA-1
chr4_1 CDS 10830228 10832204 10830228 ID=Msa0535020-mRNA-1:cds;Parent=Msa0535020-mRNA-1
chr4_1 CDS 10832569 10832847 10832569 ID=Msa0535020-mRNA-1:cds;Parent=Msa0535020-mRNA-1
chr4_1 three_prime_UTR 10832848 10833165 10832848 ID=Msa0535020-mRNA-1:three_prime_utr;Parent=Msa0535020-mRNA-1
Gene Sequence

>Msa0535020

ATGAAACCTTCTGAGGATATGGTATTTGGTTTAGAATTCAAAAAGCTCGGCTCAAAACGGTATAGCAGTTCAAAGACAGCTAAAGAAAGTTCTGCATTGCCGCAAGTAAATCAAAGTCCGAATCCGAAGAGTGCGGATAAGTCGAAGTCAAAGAGTGGTGTTGGTCCTCAATGCAGTGATCTCAAACAGAAGGCAAAGCAGAATGCAGAAGGAAATATTCGGAACCGGGAAACTGCGAAGAGAAGTGGAAATGAAGGTGATGAGCTTGTCAAACACATGTCTAATTTGCCAGGTTATCTACTGCATAATGATAGAGTGGAAAATGTTCAAGAGAAAGCTTTCAATGTTGGTGTTTTAGATTGGTCTCGACTTGAGAACTGGAAGCACAAGCATATACCAGAAGATCTAACTAGTCGTTTCACACCATTCAGTAGAGGCGAATCATCATCAAGAGGAAAACTTGATGATTGGAAAGGTTCGCAACGGATCAGACCGAATAACAGGGATGCACTTCCACAAAGTAGCAAACTTCCCTCTGAGAATGTCAAACGGTTTGAACCTTCTAGAAGTGGATCCAAGAGGATAGGAAGTGAGAAGATGAGGAATGATAATATTAAAAGAACTTCAGATGTTGGAAATTTAGCATCGAACTCAAGGCACCGCAGGATCTCGTCTTCTGTTCCTAATGAAAATAAAGATGATGAAGCTAAGCAGAAAATGGAGGGTTTGCAAGAACACAACCACAAGAAAATAGAGAGAAATCATAAGTCCATATCTGAGATGGAACAGACAACAGTAAAATCAAAAAGCAAAGGGGTCTCATTCAGTTCTAAGAAAACGGGTTCGGGAGAATGCGAATCCAGTCAAAAGGTGAATCAGTTGCCGGAGTCAGGTTTGGATGATAGCCATAAACATAGCCATAGCAAGCCAAGTAATATTGTGCTGCTTTATCCACATGATATTCCCGACTCAAGTTCTTCAGATGATTTTCGGCTTTCGGAATTCCAAACATCATCGGATGAAAATCATCCAGAATCAAGCCGAAGTAGTCTGTCATATGTTTCTATTCCAGAGGAGGTTTACGTTGGCAATGTTTGTCCTGAAATTGCACTTTCAAGTCGATGCCGTTCTGCGATTGAGCATACTTCTTTTTCTGGATCAATGCAAAACAGTGTTAGTACTGATCTCAGTATGAACCGTTCTTCTTCAATTTCTGAGAAGTCTGCTTCCAAAATAAACAAGATGTCTGGTCTGCAATCAGAAGCTGCTTGCTTTGAAAAGGATGTGTTAGACAATAGGCTGAGCAATCAGTCTGCTTTTAATAATCTGATCGAATCATTAGACCAAGAAACTGCTGAGCTGACTTCGCAGAAGGGATCAAATCCATCTCACAACCGTCGGTTTAGCTTCAGCTTAAGTCGAATCGGCAGAAGTTTCAGTTTTAAAGAAGGCCCTGCAGCTTCACAATTTAGTTCTAAGTTTGTCTCTTCAAAGTCAGGTCCAGTGACTCCTGAATCTTCTAGGCGTTGGGATAATTCAAGCAAAGAAAAGGCAAATTGTCAGAACAGAGCAAGATCAAGCCCTCTTAAGAGGTTATTAGATCCTATACTGAAGCATAAGGCATCAGGCACGCACCATTCAGGTGAAAGTAGTCAGAAACAGAAGAGAAGCACAGATTCGTCCAGTTTGAGGAGTATCGGTGTGAATGAATCACTGCAGGATGAAAAGAGCAAGGTATCATCAATCCAAGGTCTCTTGCAGATCACAATTAAAAATGGAATGCCTTTGTTTAAGTTTGTGCTCAATGATGAAAGAAAGATTTACGCCGCTACCAAGAATAGTTTAGCAGCACATGAGAAGAATGATTTAGGCTGCTGTTTTACATTCTATATTGTTAATGAAATTAAGAAAAAGAGTGGTGGATGGATGAGTCACGGAAATAAAGAAAAAAGTTGTGGCTATGCATACAATGTTGTAGCTCAGATGAAATCTTCTACCTCCAAATTCACTGAATCAGTGAATCAGAACTCCAAGAGACAGCATATGGTTAAAGAATATGTCTTATTGGGTGTTCAAATCAACCAGACAGATCAAGGACCGCCAAAGTTCATCCCGACCATGGAGCTTGCTGCTGTTGTTTTTGAGACCTCGTGTGGAAACTCAAGCAACGAACAATTGCATGGTGATAATGATATTATGAAGAAAGGAGAAAATGATAGTTCTACTGTTATTCTTCCAGGTGGTGTACATGGGTCACCAAACAGAGGTGAACCTTCATCGTTAATCCATAGATGGAGAACCGGGGGATTATGCGATTGTGGTGGTTGGGACATAGGTTGCAAACTGCTTGTGCTTCGCGAGCAGAACCTGAGTTCAAACATTCCGAGAAGTTATAAACCTTACCAGGATCGTTTTCAACTTTTTGTTCAGGAAGGAGCTGAGAATGATACACCCCATTTCACTTTGTTGCCGTTGAATAATGGATTCTACTCAGTTGAATTCAGTTCAACAATCAGTCATTTACAGGCATTCTTCATATCTGTTTCTTTGTTAAGCTGCCAGAAACAACCAGGTTCCTTGGAAATGAGTAGCATGAGTGTAGAGACCCTTAAGGAACCAAGTTCCAATAACAACAGCAGAAGACTTCAGGGGAAAGCACCTATAAAATATACACCAATTCCACCTCTTTCCCCTGTTGGCAGAGTTTAA

Protein sequence

>Msa0535020

MKPSEDMVFGLEFKKLGSKRYSSSKTAKESSALPQVNQSPNPKSADKSKSKSGVGPQCSDLKQKAKQNAEGNIRNRETAKRSGNEGDELVKHMSNLPGYLLHNDRVENVQEKAFNVGVLDWSRLENWKHKHIPEDLTSRFTPFSRGESSSRGKLDDWKGSQRIRPNNRDALPQSSKLPSENVKRFEPSRSGSKRIGSEKMRNDNIKRTSDVGNLASNSRHRRISSSVPNENKDDEAKQKMEGLQEHNHKKIERNHKSISEMEQTTVKSKSKGVSFSSKKTGSGECESSQKVNQLPESGLDDSHKHSHSKPSNIVLLYPHDIPDSSSSDDFRLSEFQTSSDENHPESSRSSLSYVSIPEEVYVGNVCPEIALSSRCRSAIEHTSFSGSMQNSVSTDLSMNRSSSISEKSASKINKMSGLQSEAACFEKDVLDNRLSNQSAFNNLIESLDQETAELTSQKGSNPSHNRRFSFSLSRIGRSFSFKEGPAASQFSSKFVSSKSGPVTPESSRRWDNSSKEKANCQNRARSSPLKRLLDPILKHKASGTHHSGESSQKQKRSTDSSSLRSIGVNESLQDEKSKVSSIQGLLQITIKNGMPLFKFVLNDERKIYAATKNSLAAHEKNDLGCCFTFYIVNEIKKKSGGWMSHGNKEKSCGYAYNVVAQMKSSTSKFTESVNQNSKRQHMVKEYVLLGVQINQTDQGPPKFIPTMELAAVVFETSCGNSSNEQLHGDNDIMKKGENDSSTVILPGGVHGSPNRGEPSSLIHRWRTGGLCDCGGWDIGCKLLVLREQNLSSNIPRSYKPYQDRFQLFVQEGAENDTPHFTLLPLNNGFYSVEFSSTISHLQAFFISVSLLSCQKQPGSLEMSSMSVETLKEPSSNNNSRRLQGKAPIKYTPIPPLSPVGRV*