Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074170 | XP_013468257.1 | 97.479 | 119 | 1 | 1 | 1 | 119 | 289 | 405 | 5.16e-72 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074170 | sp|Q9SF40|RL4A_ARATH | 83.193 | 119 | 18 | 1 | 1 | 119 | 290 | 406 | 3.42e-56 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074170 | A0A072VJR8 | 97.479 | 119 | 1 | 1 | 1 | 119 | 289 | 405 | 2.46e-72 | 230 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026270 | Msa0074170 | 0.834030 | 3.793300e-56 | -8.615850e-47 |
| Msa0074170 | Msa0116600 | 0.830762 | 2.446886e-55 | -8.615850e-47 |
| Msa0074170 | Msa0116690 | 0.847449 | 1.148262e-59 | -8.615850e-47 |
| Msa0074170 | Msa0930360 | 0.807350 | 5.277332e-50 | -8.615850e-47 |
| Msa0074170 | Msa1465890 | 0.809651 | 1.703243e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074170 | MtrunA17_Chr1g0181761 | 97.479 | 119 | 1 | 1 | 1 | 119 | 289 | 405 | 4.74e-76 | 230 |
| Msa0074170 | MtrunA17_Chr1g0168531 | 94.958 | 119 | 4 | 1 | 1 | 119 | 335 | 451 | 2.28e-74 | 227 |
| Msa0074170 | MtrunA17_Chr5g0407811 | 93.277 | 119 | 6 | 1 | 1 | 119 | 292 | 408 | 4.01e-64 | 199 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0074170 | AT3G09630.1 | 83.193 | 119 | 18 | 1 | 1 | 119 | 290 | 406 | 3.48e-57 | 182 |
| Msa0074170 | AT3G09630.2 | 82.353 | 119 | 18 | 1 | 1 | 119 | 290 | 405 | 2.82e-56 | 180 |
| Msa0074170 | AT5G02870.1 | 79.832 | 119 | 22 | 1 | 1 | 119 | 291 | 407 | 4.01e-54 | 174 |
| Msa0074170 | AT5G02870.2 | 78.992 | 119 | 22 | 1 | 1 | 119 | 291 | 406 | 3.81e-53 | 172 |
Find 160 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGTTGGATTCCATTTA+TGG | 0.101086 | 1_2:-48410748 | Msa0074170:five_prime_UTR |
| GAAAATGAAATGGTGGAATT+AGG | 0.182758 | 1_2:+48411585 | None:intergenic |
| AAGGGTCCTTTGATTGTTTA+TGG | 0.212085 | 1_2:-48410910 | Msa0074170:five_prime_UTR |
| CTTGCACCTGGTGGGCATTT+AGG | 0.222485 | 1_2:-48410802 | Msa0074170:five_prime_UTR |
| AAATGGTGGAATTAGGGTTT+TGG | 0.248171 | 1_2:+48411592 | None:intergenic |
| ATTCTCATTTGCCGGTGTTC+TGG | 0.251159 | 1_2:+48408569 | None:intergenic |
| ACCAAACCTCCGCCGAGTCC+TGG | 0.279177 | 1_2:-48411344 | Msa0074170:five_prime_UTR |
| CTACCCGGATCTGGCGTAAA+TGG | 0.282086 | 1_2:-48411212 | Msa0074170:five_prime_UTR |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1_2:-48411081 | Msa0074170:five_prime_UTR |
| TCCAATATTTCGACTTCATA+TGG | 0.294449 | 1_2:-48408908 | Msa0074170:three_prime_UTR |
| AAAATGAAATGGTGGAATTA+GGG | 0.309101 | 1_2:+48411586 | None:intergenic |
| TTCTCATTTGCCGGTGTTCT+GGG | 0.309644 | 1_2:+48408570 | None:intergenic |
| TCCCGTATCCCTCGTGTTGC+CGG | 0.310391 | 1_2:-48411303 | Msa0074170:five_prime_UTR |
| TCCATATGAAGTCGAAATAT+TGG | 0.314726 | 1_2:+48408907 | None:intergenic |
| ATTCAAATTTGTGTTATAAT+CGG | 0.325569 | 1_2:-48408509 | None:intergenic |
| CTAATTGAATGTTGTTCTCT+AGG | 0.334090 | 1_2:-48409040 | Msa0074170:three_prime_UTR |
| ATTTAGGAAGATTTGTGATT+TGG | 0.337375 | 1_2:-48410786 | Msa0074170:five_prime_UTR |
| TCCTTGGCCTTCTCGGCATC+AGG | 0.346532 | 1_2:+48410991 | None:intergenic |
| CTTGTCAAAAGAACCATAAA+TGG | 0.363253 | 1_2:+48410735 | None:intergenic |
| CCCAGGACTCGGCGGAGGTT+TGG | 0.365068 | 1_2:+48411343 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1_2:+48410533 | None:intergenic |
| TTTGAGATTATGATATTGTA+AGG | 0.394038 | 1_2:-48408995 | Msa0074170:three_prime_UTR |
| AAGAAGGTTATGTGCTTCCT+AGG | 0.394143 | 1_2:-48410700 | Msa0074170:five_prime_UTR |
| AAGGCTATCCTTGGCCTTCT+CGG | 0.399953 | 1_2:+48410984 | None:intergenic |
| GAAGAGGAAGACTGTCTCTA+AGG | 0.403102 | 1_2:-48410453 | Msa0074170:intron |
| ATCAGGGATTGGGAGGGAGG+TGG | 0.411958 | 1_2:+48411467 | None:intergenic |
| ATGAGATTCAGAGTGTTGTT+AGG | 0.418477 | 1_2:-48410634 | Msa0074170:CDS |
| TGTTTGCTCCTACCCGGATC+TGG | 0.420217 | 1_2:-48411221 | Msa0074170:five_prime_UTR |
| GGCACGGTGGGTACCACCTC+CGG | 0.421789 | 1_2:+48411284 | None:intergenic |
| ATGGCTGCACGCATGACATC+AGG | 0.422229 | 1_2:+48411450 | None:intergenic |
| CTCTTCACATCCTTCTTCAC+AGG | 0.423968 | 1_2:+48410611 | None:intergenic |
| CCAAACCTCCGCCGAGTCCT+GGG | 0.426021 | 1_2:-48411343 | Msa0074170:five_prime_UTR |
| TTTCACTGCTTTCGCTCCTT+CGG | 0.428218 | 1_2:+48410885 | None:intergenic |
| TTGTGAGACACCCAACCATT+TGG | 0.429854 | 1_2:+48409097 | None:intergenic |
| ATCCCTCGTGTTGCCGGAGG+TGG | 0.430060 | 1_2:-48411297 | Msa0074170:five_prime_UTR |
| TAAGACTGCTTTCGAGAAGT+TGG | 0.434224 | 1_2:-48410761 | Msa0074170:five_prime_UTR |
| GTTGTTGGTGATTCTGCTGA+AGG | 0.435579 | 1_2:-48411066 | Msa0074170:five_prime_UTR |
| AAAAGCATGGTACAATACTA+TGG | 0.446415 | 1_2:-48409156 | Msa0074170:CDS |
| GAGAGGACGAGCTGCGGCGG+CGG | 0.447733 | 1_2:+48411533 | None:intergenic |
| CGTGCCGGACAAGCTGCTTT+CGG | 0.452166 | 1_2:-48411267 | Msa0074170:five_prime_UTR |
| CTCCGGCAACACGAGGGATA+CGG | 0.453243 | 1_2:+48411301 | None:intergenic |
| CTCGGCGGAGGTTTGGTGAC+CGG | 0.453892 | 1_2:+48411350 | None:intergenic |
| GACAACTTCTCCAAATGGTT+GGG | 0.457303 | 1_2:-48409107 | Msa0074170:CDS |
| TGGACGAAGTTGACGATGTC+GGG | 0.461251 | 1_2:+48411423 | None:intergenic |
| CACGCATGACATCAGGGATT+GGG | 0.461277 | 1_2:+48411457 | None:intergenic |
| TCACTACTCTAATGTAGCTC+TGG | 0.464298 | 1_2:-48408795 | Msa0074170:three_prime_UTR |
| GTCACTGTCCACACCGTTGA+AGG | 0.464341 | 1_2:-48411510 | Msa0074170:five_prime_UTR |
| GGCTGACGGCGTATGGTTGG+CGG | 0.467373 | 1_2:+48411379 | None:intergenic |
| TGCGGCTGACGGCGTATGGT+TGG | 0.471375 | 1_2:+48411376 | None:intergenic |
| CTTTGCTTGCTGAAGCTGAA+AGG | 0.471531 | 1_2:-48410505 | Msa0074170:CDS |
| TCCGGCAACACGAGGGATAC+GGG | 0.473737 | 1_2:+48411302 | None:intergenic |
| CGACAACTTCTCCAAATGGT+TGG | 0.475554 | 1_2:-48409108 | Msa0074170:CDS |
| GCTGACGGCGTATGGTTGGC+GGG | 0.478202 | 1_2:+48411380 | None:intergenic |
| CAAAATTTGAGTGGGGCTAA+AGG | 0.478747 | 1_2:+48408853 | None:intergenic |
| GCACGCATGACATCAGGGAT+TGG | 0.480128 | 1_2:+48411456 | None:intergenic |
| AGATGTTCATCACGATCAAC+TGG | 0.482386 | 1_2:+48408747 | None:intergenic |
| TTGTTCTCGCTCGTGGTCAC+CGG | 0.483198 | 1_2:-48411116 | Msa0074170:five_prime_UTR |
| GAGGGAGGTGGGAGTGTCAG+TGG | 0.486549 | 1_2:+48411479 | None:intergenic |
| AATTCGACAACTTCTCCAAA+TGG | 0.487072 | 1_2:-48409112 | Msa0074170:CDS |
| GTTACCGAAAGCAGCTTGTC+CGG | 0.489007 | 1_2:+48411263 | None:intergenic |
| TTTGCTTGCTGAAGCTGAAA+GGG | 0.491694 | 1_2:-48410504 | Msa0074170:CDS |
| CTTGGGATCCGTCCTGGTAA+AGG | 0.491818 | 1_2:-48410964 | Msa0074170:five_prime_UTR |
| GCTTTGCGGCTGACGGCGTA+TGG | 0.494149 | 1_2:+48411372 | None:intergenic |
| CCGTAGGTATATCTCTCGTA+AGG | 0.494610 | 1_2:-48410929 | Msa0074170:five_prime_UTR |
| GGTGCCATTTACGCCAGATC+CGG | 0.497461 | 1_2:+48411208 | None:intergenic |
| AAGATTCAACCTTTCAACAT+TGG | 0.499445 | 1_2:+48410831 | None:intergenic |
| TGTGCTTCCTAGGGCTAAGA+TGG | 0.502217 | 1_2:-48410690 | Msa0074170:exon |
| GGAAGAAGCTACTGCTATCA+AGG | 0.505228 | 1_2:-48409186 | Msa0074170:CDS |
| TCCGCCGAGTCCTGGGGTAC+CGG | 0.506294 | 1_2:-48411336 | Msa0074170:five_prime_UTR |
| TGGGAATTCACCATTCTGAA+TGG | 0.508333 | 1_2:+48408589 | None:intergenic |
| TTGTATGTAATGCTTCAAGA+AGG | 0.508678 | 1_2:-48408688 | Msa0074170:three_prime_UTR |
| TCAGGGATTGGGAGGGAGGT+GGG | 0.510339 | 1_2:+48411468 | None:intergenic |
| GTCGCATGTTTGCTCCTACC+CGG | 0.517664 | 1_2:-48411227 | Msa0074170:five_prime_UTR |
| AGTGGCCATGTCACCTTCAA+CGG | 0.518640 | 1_2:+48411497 | None:intergenic |
| AGGAAAAGCTTGATAAGAAG+AGG | 0.518903 | 1_2:-48410469 | Msa0074170:CDS |
| AGGTTTGGTGACCGGCTTTG+CGG | 0.519498 | 1_2:+48411358 | None:intergenic |
| ATAACCTTCTTCTTCTCCGA+AGG | 0.520661 | 1_2:+48410712 | None:intergenic |
| GACAGCACGTCCGGTACCCC+AGG | 0.521322 | 1_2:+48411326 | None:intergenic |
| GAGAAGGCCAAGGATAGCCT+TGG | 0.521827 | 1_2:-48410982 | Msa0074170:five_prime_UTR |
| TACGCCGTCAGCCGCAAAGC+CGG | 0.523016 | 1_2:-48411369 | Msa0074170:five_prime_UTR |
| GACATCAGGGATTGGGAGGG+AGG | 0.523295 | 1_2:+48411464 | None:intergenic |
| GATAGCCTTGGGATCCGTCC+TGG | 0.524843 | 1_2:-48410970 | Msa0074170:five_prime_UTR |
| CAAAGGATTCTTCTTCAAAG+TGG | 0.526268 | 1_2:+48410586 | None:intergenic |
| AGAAGGCCAAGGATAGCCTT+GGG | 0.528805 | 1_2:-48410981 | Msa0074170:five_prime_UTR |
| GTTGACGATGTCGGGACGGA+TGG | 0.533971 | 1_2:+48411431 | None:intergenic |
| ACGGATCCCAAGGCTATCCT+TGG | 0.535964 | 1_2:+48410975 | None:intergenic |
| CCTTCACTTGTTCTCGCTCG+TGG | 0.537661 | 1_2:-48411123 | Msa0074170:five_prime_UTR |
| TGGTGAATTCTGATTTGACT+AGG | 0.539110 | 1_2:-48410670 | Msa0074170:CDS |
| CAAGCCTTCGGAGAAGAAGA+AGG | 0.539180 | 1_2:-48410716 | Msa0074170:five_prime_UTR |
| AGCAGCTTGTCCGGCACGGT+GGG | 0.541824 | 1_2:+48411272 | None:intergenic |
| TGTTGTTAGGCCTGTGAAGA+AGG | 0.543579 | 1_2:-48410621 | Msa0074170:CDS |
| GTGACCGGCTTTGCGGCTGA+CGG | 0.544837 | 1_2:+48411365 | None:intergenic |
| GATACGGGAGACAGCACGTC+CGG | 0.546656 | 1_2:+48411317 | None:intergenic |
| TCAGTGTGTTCAACAGAAGA+TGG | 0.551575 | 1_2:+48408825 | None:intergenic |
| TTGATTGTTTATGGTACCGA+AGG | 0.552842 | 1_2:-48410901 | Msa0074170:five_prime_UTR |
| CCCTGATGCCGAGAAGGCCA+AGG | 0.558129 | 1_2:-48410992 | Msa0074170:five_prime_UTR |
| TGGCAACGCAAAATTTGAGT+GGG | 0.560260 | 1_2:+48408845 | None:intergenic |
| GAATTCACCATCTTAGCCCT+AGG | 0.564088 | 1_2:+48410683 | None:intergenic |
| AAATGAGAATGCACAAAATG+TGG | 0.564953 | 1_2:-48408556 | Msa0074170:three_prime_UTR |
| ACTCAGGAACAGTTTCGATC+CGG | 0.567598 | 1_2:+48411097 | None:intergenic |
| GCTACTGCTATCAAGGCTGC+AGG | 0.570583 | 1_2:-48409179 | Msa0074170:CDS |
| CCTTGGCCTTCTCGGCATCA+GGG | 0.570713 | 1_2:+48410992 | None:intergenic |
| ACGTCCGGTACCCCAGGACT+CGG | 0.570995 | 1_2:+48411332 | None:intergenic |
| TGAAGGTGTTGAGAAGACTA+AGG | 0.571093 | 1_2:-48411049 | Msa0074170:five_prime_UTR |
| AGAATCTCAATGTTATGTTG+AGG | 0.573663 | 1_2:-48410562 | Msa0074170:CDS |
| CGTAGGTATATCTCTCGTAA+GGG | 0.577073 | 1_2:-48410928 | Msa0074170:five_prime_UTR |
| GCAGAATCACCAACAACAAG+AGG | 0.578714 | 1_2:+48411072 | None:intergenic |
| GTGGACGAAGTTGACGATGT+CGG | 0.580395 | 1_2:+48411422 | None:intergenic |
| TGTATGTAATGCTTCAAGAA+GGG | 0.582120 | 1_2:-48408687 | Msa0074170:three_prime_UTR |
| AGCTTACCCTGATGCCGAGA+AGG | 0.582607 | 1_2:-48410998 | Msa0074170:five_prime_UTR |
| GGTACCCCAGGACTCGGCGG+AGG | 0.582954 | 1_2:+48411338 | None:intergenic |
| CTTTACCAGGACGGATCCCA+AGG | 0.583493 | 1_2:+48410965 | None:intergenic |
| GTGCCATTTACGCCAGATCC+GGG | 0.584645 | 1_2:+48411209 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1_2:-48410532 | Msa0074170:CDS |
| GACGAGAGGACGAGCTGCGG+CGG | 0.586898 | 1_2:+48411530 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1_2:-48410528 | Msa0074170:CDS |
| TCAGAGAGAAAATGAAATGG+TGG | 0.589890 | 1_2:+48411578 | None:intergenic |
| TCGGTACCATAAACAATCAA+AGG | 0.593031 | 1_2:+48410904 | None:intergenic |
| ACAGAGATCTAGCTCATCTG+TGG | 0.594905 | 1_2:-48408664 | Msa0074170:three_prime_UTR |
| ATAACATTGAGATTCTTCAA+AGG | 0.595302 | 1_2:+48410569 | None:intergenic |
| CATTTACGCCAGATCCGGGT+AGG | 0.597970 | 1_2:+48411213 | None:intergenic |
| TGAAAGGGTTAAGTCCAAGA+AGG | 0.600060 | 1_2:-48410489 | Msa0074170:CDS |
| GCATGACATCAGGGATTGGG+AGG | 0.602783 | 1_2:+48411460 | None:intergenic |
| AAGGTAAAATGCGTAACCGT+AGG | 0.603588 | 1_2:-48410945 | Msa0074170:five_prime_UTR |
| GGAGGTGGTACCCACCGTGC+CGG | 0.603632 | 1_2:-48411282 | Msa0074170:five_prime_UTR |
| GTACCACCTCCGGCAACACG+AGG | 0.605092 | 1_2:+48411294 | None:intergenic |
| TGTTCAGAGAGAAAATGAAA+TGG | 0.605978 | 1_2:+48411575 | None:intergenic |
| AATCTTCCTAAATGCCCACC+AGG | 0.605991 | 1_2:+48410796 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1_2:+48411081 | None:intergenic |
| CTGTGAAGAAGGATGTGAAG+AGG | 0.612591 | 1_2:-48410610 | Msa0074170:CDS |
| CCACACCGTTGAAGGTGACA+TGG | 0.613167 | 1_2:-48411502 | Msa0074170:five_prime_UTR |
| TGTGAAGAAGGATGTGAAGA+GGG | 0.613222 | 1_2:-48410609 | Msa0074170:CDS |
| CGAAAGCAGCTTGTCCGGCA+CGG | 0.614513 | 1_2:+48411268 | None:intergenic |
| CGAAGTTGACGATGTCGGGA+CGG | 0.617896 | 1_2:+48411427 | None:intergenic |
| TTGAGATCACCAATGTTGAA+AGG | 0.623070 | 1_2:-48410840 | Msa0074170:five_prime_UTR |
| TCAAGGCTGCAGGAAAAGCA+TGG | 0.627406 | 1_2:-48409169 | Msa0074170:CDS |
| TGGCTGCACGCATGACATCA+GGG | 0.628185 | 1_2:+48411451 | None:intergenic |
| CGTATCCCTCGTGTTGCCGG+AGG | 0.628937 | 1_2:-48411300 | Msa0074170:five_prime_UTR |
| AGAAGGTTATGTGCTTCCTA+GGG | 0.632063 | 1_2:-48410699 | Msa0074170:five_prime_UTR |
| CCACGAGCGAGAACAAGTGA+AGG | 0.635968 | 1_2:+48411123 | None:intergenic |
| CAAACCTCCGCCGAGTCCTG+GGG | 0.638408 | 1_2:-48411342 | Msa0074170:five_prime_UTR |
| ATGGCAACGCAAAATTTGAG+TGG | 0.639402 | 1_2:+48408844 | None:intergenic |
| CATGACATCAGGGATTGGGA+GGG | 0.640964 | 1_2:+48411461 | None:intergenic |
| TTCGGTAACATGTGCCGTGG+TGG | 0.641371 | 1_2:-48411249 | Msa0074170:five_prime_UTR |
| CCATGTCACCTTCAACGGTG+TGG | 0.644494 | 1_2:+48411502 | None:intergenic |
| CAGAGATCTAGCTCATCTGT+GGG | 0.650289 | 1_2:-48408663 | Msa0074170:three_prime_UTR |
| AAATATTGGATTACAACGAG+AGG | 0.654014 | 1_2:+48408921 | None:intergenic |
| AAGCAGCTTGTCCGGCACGG+TGG | 0.654435 | 1_2:+48411271 | None:intergenic |
| AGTGACGAGAGGACGAGCTG+CGG | 0.658727 | 1_2:+48411527 | None:intergenic |
| ATGGTGAATTCCCAGAACAC+CGG | 0.661262 | 1_2:-48408580 | Msa0074170:three_prime_UTR |
| TCTCACAATGAAGTGTCTCA+TGG | 0.672237 | 1_2:-48409082 | Msa0074170:exon |
| TTTGAGTGGGGCTAAAGGTG+TGG | 0.674405 | 1_2:+48408858 | None:intergenic |
| ACGGTGTGGACAGTGACGAG+AGG | 0.675130 | 1_2:+48411516 | None:intergenic |
| ACATTGGTGATCTCAACACC+AGG | 0.677167 | 1_2:+48410847 | None:intergenic |
| TCCGGTACCCCAGGACTCGG+CGG | 0.686621 | 1_2:+48411335 | None:intergenic |
| GGCAACGCAAAATTTGAGTG+GGG | 0.695251 | 1_2:+48408846 | None:intergenic |
| GCTTTCGGTAACATGTGCCG+TGG | 0.703272 | 1_2:-48411252 | Msa0074170:five_prime_UTR |
| CCTTACGAGAGATATACCTA+CGG | 0.703573 | 1_2:+48410929 | None:intergenic |
| TACCACCTCCGGCAACACGA+GGG | 0.703891 | 1_2:+48411295 | None:intergenic |
| GAGCAAACATGCGACCACCA+CGG | 0.722368 | 1_2:+48411235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATTTTCAAATTCTAAA+GGG | + | chr1_2:48409968-48409987 | None:intergenic | 15.0% |
| !!! | TTATCATTTTCAAATTCTAA+AGG | + | chr1_2:48409969-48409988 | None:intergenic | 15.0% |
| !! | TGTATAAATGATATTACTAA+TGG | - | chr1_2:48410509-48410528 | Msa0074170:CDS | 15.0% |
| !! | ACTAATTAACAACAATGTAA+TGG | + | chr1_2:48409728-48409747 | None:intergenic | 20.0% |
| !! | ATTTGAGTGAAGATTTAATT+TGG | - | chr1_2:48409833-48409852 | Msa0074170:intron | 20.0% |
| !!! | TTCTAAAATGAAACTTAGAT+TGG | - | chr1_2:48409892-48409911 | Msa0074170:intron | 20.0% |
| !!! | TTTTGAAATATTGTTGATGT+AGG | - | chr1_2:48410179-48410198 | Msa0074170:intron | 20.0% |
| !!! | TTTGAAATATTGTTGATGTA+GGG | - | chr1_2:48410180-48410199 | Msa0074170:intron | 20.0% |
| !! | ATAATATTGTATGTTGGAAT+TGG | + | chr1_2:48410558-48410577 | None:intergenic | 20.0% |
| !! | ATTCCAACATACAATATTAT+AGG | - | chr1_2:48410558-48410577 | Msa0074170:CDS | 20.0% |
| !! | TAACCTATAATATTGTATGT+TGG | + | chr1_2:48410564-48410583 | None:intergenic | 20.0% |
| !! | ACATGTATGTTAAATGTAAT+TGG | - | chr1_2:48410622-48410641 | Msa0074170:CDS | 20.0% |
| !!! | TTTGAGATTATGATATTGTA+AGG | - | chr1_2:48411111-48411130 | Msa0074170:five_prime_UTR | 20.0% |
| !! | AAAATGAAATGGTGGAATTA+GGG | + | chr1_2:48408523-48408542 | None:intergenic | 25.0% |
| !!! | TCTGATTCACATTGATTTTA+CGG | + | chr1_2:48408922-48408941 | None:intergenic | 25.0% |
| !!! | ATCAAGCTTTTGAAATCAAT+TGG | - | chr1_2:48409085-48409104 | Msa0074170:exon | 25.0% |
| ! | ATTTAGGAAGATTTGTGATT+TGG | - | chr1_2:48409320-48409339 | Msa0074170:intron | 25.0% |
| ! | ATAACATTGAGATTCTTCAA+AGG | + | chr1_2:48409540-48409559 | None:intergenic | 25.0% |
| !! | TTTAGAATATCTATAACGTG+AGG | + | chr1_2:48409879-48409898 | None:intergenic | 25.0% |
| ! | TTAGATTGGTAAGCAATAAT+AGG | - | chr1_2:48409906-48409925 | Msa0074170:intron | 25.0% |
| !!! | ATTCACCTTTTGTTGTTTTA+TGG | - | chr1_2:48410152-48410171 | Msa0074170:intron | 25.0% |
| ! | ATGATCCATAAAACAACAAA+AGG | + | chr1_2:48410160-48410179 | None:intergenic | 25.0% |
| ! | TTGAAATATTGTTGATGTAG+GGG | - | chr1_2:48410181-48410200 | Msa0074170:intron | 25.0% |
| !! | CTTTAAAAGAGTTCATCAAA+TGG | + | chr1_2:48410304-48410323 | None:intergenic | 25.0% |
| ! | ACAAAGATATTCAACTAACA+TGG | + | chr1_2:48410858-48410877 | None:intergenic | 25.0% |
| !! | AGGTTTTACTTTATTGTCTT+TGG | - | chr1_2:48411086-48411105 | Msa0074170:five_prime_UTR | 25.0% |
| ! | GGAAAAAAATCTTTCATATC+AGG | + | chr1_2:48411167-48411186 | None:intergenic | 25.0% |
| !! | TAAAAAAGTCGCAAATGTTT+TGG | + | chr1_2:48411576-48411595 | None:intergenic | 25.0% |
| ! | GAAAATGAAATGGTGGAATT+AGG | + | chr1_2:48408524-48408543 | None:intergenic | 30.0% |
| TGTTCAGAGAGAAAATGAAA+TGG | + | chr1_2:48408534-48408553 | None:intergenic | 30.0% | |
| AAGATTCAACCTTTCAACAT+TGG | + | chr1_2:48409278-48409297 | None:intergenic | 30.0% | |
| CTTGTCAAAAGAACCATAAA+TGG | + | chr1_2:48409374-48409393 | None:intergenic | 30.0% | |
| AGAATCTCAATGTTATGTTG+AGG | - | chr1_2:48409544-48409563 | Msa0074170:intron | 30.0% | |
| GAGGACTAAAACAAATTCAA+GGG | + | chr1_2:48409860-48409879 | None:intergenic | 30.0% | |
| TGAGGACTAAAACAAATTCA+AGG | + | chr1_2:48409861-48409880 | None:intergenic | 30.0% | |
| CATGCTTGACATTATTAACT+TGG | - | chr1_2:48410026-48410045 | Msa0074170:intron | 30.0% | |
| ATCTCTCATTTCCAATATGA+TGG | - | chr1_2:48410059-48410078 | Msa0074170:intron | 30.0% | |
| TAATGTCAATGCCATCATAT+TGG | + | chr1_2:48410073-48410092 | None:intergenic | 30.0% | |
| ! | GAAATGTATTTGAAACCAAG+TGG | + | chr1_2:48410097-48410116 | None:intergenic | 30.0% |
| ACAAGAGTGAATACACAATT+TGG | + | chr1_2:48410245-48410264 | None:intergenic | 30.0% | |
| ! | AGAGTTCATCAAATGGATTT+GGG | + | chr1_2:48410297-48410316 | None:intergenic | 30.0% |
| ! | AAGAGTTCATCAAATGGATT+TGG | + | chr1_2:48410298-48410317 | None:intergenic | 30.0% |
| !!! | TCATTTTTAGTGTTACTTGC+AGG | - | chr1_2:48410331-48410350 | Msa0074170:intron | 30.0% |
| !!! | ATAGAGACTGATTTGCTTTT+TGG | - | chr1_2:48410471-48410490 | Msa0074170:CDS | 30.0% |
| !!! | TTTTTGCTGTTTGTCTACTT+TGG | - | chr1_2:48410825-48410844 | Msa0074170:five_prime_UTR | 30.0% |
| ! | AAAAGCATGGTACAATACTA+TGG | - | chr1_2:48410950-48410969 | Msa0074170:five_prime_UTR | 30.0% |
| CTAATTGAATGTTGTTCTCT+AGG | - | chr1_2:48411066-48411085 | Msa0074170:five_prime_UTR | 30.0% | |
| AAATATTGGATTACAACGAG+AGG | + | chr1_2:48411188-48411207 | None:intergenic | 30.0% | |
| TCCAATATTTCGACTTCATA+TGG | - | chr1_2:48411198-48411217 | Msa0074170:five_prime_UTR | 30.0% | |
| TCCATATGAAGTCGAAATAT+TGG | + | chr1_2:48411202-48411221 | None:intergenic | 30.0% | |
| TTGTATGTAATGCTTCAAGA+AGG | - | chr1_2:48411418-48411437 | Msa0074170:five_prime_UTR | 30.0% | |
| TGTATGTAATGCTTCAAGAA+GGG | - | chr1_2:48411419-48411438 | Msa0074170:five_prime_UTR | 30.0% | |
| !!! | CTTATTTTGACCATTCAGAA+TGG | - | chr1_2:48411507-48411526 | Msa0074170:five_prime_UTR | 30.0% |
| AAATGAGAATGCACAAAATG+TGG | - | chr1_2:48411550-48411569 | Msa0074170:five_prime_UTR | 30.0% | |
| !! | AATGGTGGAATTAGGGTTTT+GGG | + | chr1_2:48408516-48408535 | None:intergenic | 35.0% |
| !! | AAATGGTGGAATTAGGGTTT+TGG | + | chr1_2:48408517-48408536 | None:intergenic | 35.0% |
| TCAGAGAGAAAATGAAATGG+TGG | + | chr1_2:48408531-48408550 | None:intergenic | 35.0% | |
| ! | TTACGCATTTTACCTTTACC+AGG | + | chr1_2:48409157-48409176 | None:intergenic | 35.0% |
| AAGGGTCCTTTGATTGTTTA+TGG | - | chr1_2:48409196-48409215 | Msa0074170:intron | 35.0% | |
| TCGGTACCATAAACAATCAA+AGG | + | chr1_2:48409205-48409224 | None:intergenic | 35.0% | |
| ! | TTGATTGTTTATGGTACCGA+AGG | - | chr1_2:48409205-48409224 | Msa0074170:intron | 35.0% |
| ! | AAAGCTTTTCGCAATATTCC+TGG | - | chr1_2:48409241-48409260 | Msa0074170:intron | 35.0% |
| TTGAGATCACCAATGTTGAA+AGG | - | chr1_2:48409266-48409285 | Msa0074170:intron | 35.0% | |
| GAGAAGTTGGATTCCATTTA+TGG | - | chr1_2:48409358-48409377 | Msa0074170:intron | 35.0% | |
| ! | TGGTGAATTCTGATTTGACT+AGG | - | chr1_2:48409436-48409455 | Msa0074170:intron | 35.0% |
| !! | ATGAGATTCAGAGTGTTGTT+AGG | - | chr1_2:48409472-48409491 | Msa0074170:intron | 35.0% |
| CAAAGGATTCTTCTTCAAAG+TGG | + | chr1_2:48409523-48409542 | None:intergenic | 35.0% | |
| ! | CTTATCAAGCTTTTCCTTCT+TGG | + | chr1_2:48409634-48409653 | None:intergenic | 35.0% |
| AGGAAAAGCTTGATAAGAAG+AGG | - | chr1_2:48409637-48409656 | Msa0074170:intron | 35.0% | |
| ACTTGCAGGTTTAGATTGAT+TGG | - | chr1_2:48410345-48410364 | Msa0074170:intron | 35.0% | |
| CAACCATGTATGAAGATGAA+TGG | - | chr1_2:48410762-48410781 | Msa0074170:five_prime_UTR | 35.0% | |
| CAACCATTCATCTTCATACA+TGG | + | chr1_2:48410768-48410787 | None:intergenic | 35.0% | |
| ACAGCAAAAACATGCATCAA+GGG | + | chr1_2:48410815-48410834 | None:intergenic | 35.0% | |
| AACAGCAAAAACATGCATCA+AGG | + | chr1_2:48410816-48410835 | None:intergenic | 35.0% | |
| AATTCGACAACTTCTCCAAA+TGG | - | chr1_2:48410994-48411013 | Msa0074170:five_prime_UTR | 35.0% | |
| ! | AACTGGTGTTTTCTACAGAT+CGG | + | chr1_2:48411345-48411364 | None:intergenic | 35.0% |
| ! | TTTTGTGCATTCTCATTTGC+CGG | + | chr1_2:48411548-48411567 | None:intergenic | 35.0% |
| AACACACACACACACAACAA+TGG | - | chr1_2:48408550-48408569 | Msa0074170:three_prime_UTR | 40.0% | |
| !! | CGTTTTTGGAGATATTGGAG+TGG | + | chr1_2:48408706-48408725 | None:intergenic | 40.0% |
| !! | TGAAGGTGTTGAGAAGACTA+AGG | - | chr1_2:48409057-48409076 | Msa0074170:three_prime_UTR | 40.0% |
| ! | GCATTTTACCTTTACCAGGA+CGG | + | chr1_2:48409153-48409172 | None:intergenic | 40.0% |
| AAGGTAAAATGCGTAACCGT+AGG | - | chr1_2:48409161-48409180 | Msa0074170:CDS | 40.0% | |
| CCTTACGAGAGATATACCTA+CGG | + | chr1_2:48409180-48409199 | None:intergenic | 40.0% | |
| CGTAGGTATATCTCTCGTAA+GGG | - | chr1_2:48409178-48409197 | Msa0074170:CDS | 40.0% | |
| !!! | AATCTTTTGAAGCTTGCACC+TGG | - | chr1_2:48409292-48409311 | Msa0074170:intron | 40.0% |
| TAAGACTGCTTTCGAGAAGT+TGG | - | chr1_2:48409345-48409364 | Msa0074170:intron | 40.0% | |
| ! | TGGTTCTTTTGACAAGCCTT+CGG | - | chr1_2:48409378-48409397 | Msa0074170:intron | 40.0% |
| ATAACCTTCTTCTTCTCCGA+AGG | + | chr1_2:48409397-48409416 | None:intergenic | 40.0% | |
| AAGAAGGTTATGTGCTTCCT+AGG | - | chr1_2:48409406-48409425 | Msa0074170:intron | 40.0% | |
| AGAAGGTTATGTGCTTCCTA+GGG | - | chr1_2:48409407-48409426 | Msa0074170:intron | 40.0% | |
| TGTGAAGAAGGATGTGAAGA+GGG | - | chr1_2:48409497-48409516 | Msa0074170:intron | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | + | chr1_2:48409576-48409595 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | - | chr1_2:48409574-48409593 | Msa0074170:intron | 40.0% | |
| ! | TTTGCTTGCTGAAGCTGAAA+GGG | - | chr1_2:48409602-48409621 | Msa0074170:intron | 40.0% |
| TGAAAGGGTTAAGTCCAAGA+AGG | - | chr1_2:48409617-48409636 | Msa0074170:intron | 40.0% | |
| ATAGGCTATGTTGCTCTGTA+AGG | - | chr1_2:48409924-48409943 | Msa0074170:intron | 40.0% | |
| !! | TGGCATTGACATTATCCACT+TGG | - | chr1_2:48410079-48410098 | Msa0074170:intron | 40.0% |
| !! | GTCCTGCAATTTCAAGTTTC+AGG | - | chr1_2:48410218-48410237 | Msa0074170:intron | 40.0% |
| GACCTGAAACTTGAAATTGC+AGG | + | chr1_2:48410223-48410242 | None:intergenic | 40.0% | |
| ! | ATCAAATGGATTTGGGTCAC+TGG | + | chr1_2:48410290-48410309 | None:intergenic | 40.0% |
| GACAACTTCTCCAAATGGTT+GGG | - | chr1_2:48410999-48411018 | Msa0074170:five_prime_UTR | 40.0% | |
| ! | TCTCACAATGAAGTGTCTCA+TGG | - | chr1_2:48411024-48411043 | Msa0074170:five_prime_UTR | 40.0% |
| CAAAATTTGAGTGGGGCTAA+AGG | + | chr1_2:48411256-48411275 | None:intergenic | 40.0% | |
| TGGCAACGCAAAATTTGAGT+GGG | + | chr1_2:48411264-48411283 | None:intergenic | 40.0% | |
| ATGGCAACGCAAAATTTGAG+TGG | + | chr1_2:48411265-48411284 | None:intergenic | 40.0% | |
| TCAGTGTGTTCAACAGAAGA+TGG | + | chr1_2:48411284-48411303 | None:intergenic | 40.0% | |
| TCACTACTCTAATGTAGCTC+TGG | - | chr1_2:48411311-48411330 | Msa0074170:five_prime_UTR | 40.0% | |
| AGATGTTCATCACGATCAAC+TGG | + | chr1_2:48411362-48411381 | None:intergenic | 40.0% | |
| TGGGAATTCACCATTCTGAA+TGG | + | chr1_2:48411520-48411539 | None:intergenic | 40.0% | |
| ACTCAGGAACAGTTTCGATC+CGG | + | chr1_2:48409012-48409031 | None:intergenic | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | + | chr1_2:48409028-48409047 | None:intergenic | 45.0% | |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | - | chr1_2:48409025-48409044 | Msa0074170:three_prime_UTR | 45.0% |
| GCAGAATCACCAACAACAAG+AGG | + | chr1_2:48409037-48409056 | None:intergenic | 45.0% | |
| !! | GTTGTTGGTGATTCTGCTGA+AGG | - | chr1_2:48409040-48409059 | Msa0074170:three_prime_UTR | 45.0% |
| CCGTAGGTATATCTCTCGTA+AGG | - | chr1_2:48409177-48409196 | Msa0074170:CDS | 45.0% | |
| TTTCACTGCTTTCGCTCCTT+CGG | + | chr1_2:48409224-48409243 | None:intergenic | 45.0% | |
| ! | ACATTGGTGATCTCAACACC+AGG | + | chr1_2:48409262-48409281 | None:intergenic | 45.0% |
| !!! | TTTTGAAGCTTGCACCTGGT+GGG | - | chr1_2:48409296-48409315 | Msa0074170:intron | 45.0% |
| AATCTTCCTAAATGCCCACC+AGG | + | chr1_2:48409313-48409332 | None:intergenic | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | + | chr1_2:48409426-48409445 | None:intergenic | 45.0% | |
| TGTTGTTAGGCCTGTGAAGA+AGG | - | chr1_2:48409485-48409504 | Msa0074170:intron | 45.0% | |
| CTCTTCACATCCTTCTTCAC+AGG | + | chr1_2:48409498-48409517 | None:intergenic | 45.0% | |
| CTGTGAAGAAGGATGTGAAG+AGG | - | chr1_2:48409496-48409515 | Msa0074170:intron | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | - | chr1_2:48409578-48409597 | Msa0074170:intron | 45.0% | |
| ! | CTTTGCTTGCTGAAGCTGAA+AGG | - | chr1_2:48409601-48409620 | Msa0074170:intron | 45.0% |
| GAAGAGGAAGACTGTCTCTA+AGG | - | chr1_2:48409653-48409672 | Msa0074170:intron | 45.0% | |
| GCAAAAACATGCATCAAGGG+AGG | + | chr1_2:48410812-48410831 | None:intergenic | 45.0% | |
| AATTACCCCTGTTCATTCCC+AGG | - | chr1_2:48410899-48410918 | Msa0074170:five_prime_UTR | 45.0% | |
| TTCTTCCTGGGAATGAACAG+GGG | + | chr1_2:48410907-48410926 | None:intergenic | 45.0% | |
| CTTCTTCCTGGGAATGAACA+GGG | + | chr1_2:48410908-48410927 | None:intergenic | 45.0% | |
| GATAGCAGTAGCTTCTTCCT+GGG | + | chr1_2:48410919-48410938 | None:intergenic | 45.0% | |
| TGATAGCAGTAGCTTCTTCC+TGG | + | chr1_2:48410920-48410939 | None:intergenic | 45.0% | |
| GGAAGAAGCTACTGCTATCA+AGG | - | chr1_2:48410920-48410939 | Msa0074170:five_prime_UTR | 45.0% | |
| CGACAACTTCTCCAAATGGT+TGG | - | chr1_2:48410998-48411017 | Msa0074170:five_prime_UTR | 45.0% | |
| TTGTGAGACACCCAACCATT+TGG | + | chr1_2:48411012-48411031 | None:intergenic | 45.0% | |
| GGCAACGCAAAATTTGAGTG+GGG | + | chr1_2:48411263-48411282 | None:intergenic | 45.0% | |
| ! | ACAGAGATCTAGCTCATCTG+TGG | - | chr1_2:48411442-48411461 | Msa0074170:five_prime_UTR | 45.0% |
| ! | CAGAGATCTAGCTCATCTGT+GGG | - | chr1_2:48411443-48411462 | Msa0074170:five_prime_UTR | 45.0% |
| ATGGTGAATTCCCAGAACAC+CGG | - | chr1_2:48411526-48411545 | Msa0074170:five_prime_UTR | 45.0% | |
| TTCTCATTTGCCGGTGTTCT+GGG | + | chr1_2:48411539-48411558 | None:intergenic | 45.0% | |
| ATTCTCATTTGCCGGTGTTC+TGG | + | chr1_2:48411540-48411559 | None:intergenic | 45.0% | |
| !!! | GGTGGAATTAGGGTTTTGGG+TGG | + | chr1_2:48408513-48408532 | None:intergenic | 50.0% |
| AGTGGCCATGTCACCTTCAA+CGG | + | chr1_2:48408612-48408631 | None:intergenic | 50.0% | |
| CATGACATCAGGGATTGGGA+GGG | + | chr1_2:48408648-48408667 | None:intergenic | 50.0% | |
| CACGCATGACATCAGGGATT+GGG | + | chr1_2:48408652-48408671 | None:intergenic | 50.0% | |
| TGGACGAAGTTGACGATGTC+GGG | + | chr1_2:48408686-48408705 | None:intergenic | 50.0% | |
| GTGGACGAAGTTGACGATGT+CGG | + | chr1_2:48408687-48408706 | None:intergenic | 50.0% | |
| !! | GCGGGCGTTTTTGGAGATAT+TGG | + | chr1_2:48408711-48408730 | None:intergenic | 50.0% |
| GTTACCGAAAGCAGCTTGTC+CGG | + | chr1_2:48408846-48408865 | None:intergenic | 50.0% | |
| ! | AAGGCTATCCTTGGCCTTCT+CGG | + | chr1_2:48409125-48409144 | None:intergenic | 50.0% |
| AGAAGGCCAAGGATAGCCTT+GGG | - | chr1_2:48409125-48409144 | Msa0074170:CDS | 50.0% | |
| !!! | CTTTTGAAGCTTGCACCTGG+TGG | - | chr1_2:48409295-48409314 | Msa0074170:intron | 50.0% |
| CAAGCCTTCGGAGAAGAAGA+AGG | - | chr1_2:48409390-48409409 | Msa0074170:intron | 50.0% | |
| TGTGCTTCCTAGGGCTAAGA+TGG | - | chr1_2:48409416-48409435 | Msa0074170:intron | 50.0% | |
| GCTTCTTCCTGGGAATGAAC+AGG | + | chr1_2:48410909-48410928 | None:intergenic | 50.0% | |
| TCAAGGCTGCAGGAAAAGCA+TGG | - | chr1_2:48410937-48410956 | Msa0074170:five_prime_UTR | 50.0% | |
| TTTGAGTGGGGCTAAAGGTG+TGG | + | chr1_2:48411251-48411270 | None:intergenic | 50.0% | |
| GTCACTGTCCACACCGTTGA+AGG | - | chr1_2:48408596-48408615 | Msa0074170:three_prime_UTR | 55.0% | |
| CCATGTCACCTTCAACGGTG+TGG | + | chr1_2:48408607-48408626 | None:intergenic | 55.0% | |
| CCACACCGTTGAAGGTGACA+TGG | - | chr1_2:48408604-48408623 | Msa0074170:three_prime_UTR | 55.0% | |
| GCATGACATCAGGGATTGGG+AGG | + | chr1_2:48408649-48408668 | None:intergenic | 55.0% | |
| GCACGCATGACATCAGGGAT+TGG | + | chr1_2:48408653-48408672 | None:intergenic | 55.0% | |
| TGGCTGCACGCATGACATCA+GGG | + | chr1_2:48408658-48408677 | None:intergenic | 55.0% | |
| ATGGCTGCACGCATGACATC+AGG | + | chr1_2:48408659-48408678 | None:intergenic | 55.0% | |
| CGAAGTTGACGATGTCGGGA+CGG | + | chr1_2:48408682-48408701 | None:intergenic | 55.0% | |
| !! | GTATGGTTGGCGGGCGTTTT+TGG | + | chr1_2:48408720-48408739 | None:intergenic | 55.0% |
| !! | AGGTTTGGTGACCGGCTTTG+CGG | + | chr1_2:48408751-48408770 | None:intergenic | 55.0% |
| GCTTTCGGTAACATGTGCCG+TGG | - | chr1_2:48408854-48408873 | Msa0074170:three_prime_UTR | 55.0% | |
| TTCGGTAACATGTGCCGTGG+TGG | - | chr1_2:48408857-48408876 | Msa0074170:three_prime_UTR | 55.0% | |
| GAGCAAACATGCGACCACCA+CGG | + | chr1_2:48408874-48408893 | None:intergenic | 55.0% | |
| GTCGCATGTTTGCTCCTACC+CGG | - | chr1_2:48408879-48408898 | Msa0074170:three_prime_UTR | 55.0% | |
| TGTTTGCTCCTACCCGGATC+TGG | - | chr1_2:48408885-48408904 | Msa0074170:three_prime_UTR | 55.0% | |
| CATTTACGCCAGATCCGGGT+AGG | + | chr1_2:48408896-48408915 | None:intergenic | 55.0% | |
| CTACCCGGATCTGGCGTAAA+TGG | - | chr1_2:48408894-48408913 | Msa0074170:three_prime_UTR | 55.0% | |
| !! | GTGCCATTTACGCCAGATCC+GGG | + | chr1_2:48408900-48408919 | None:intergenic | 55.0% |
| !! | GGTGCCATTTACGCCAGATC+CGG | + | chr1_2:48408901-48408920 | None:intergenic | 55.0% |
| CCACGAGCGAGAACAAGTGA+AGG | + | chr1_2:48408986-48409005 | None:intergenic | 55.0% | |
| CCTTCACTTGTTCTCGCTCG+TGG | - | chr1_2:48408983-48409002 | Msa0074170:three_prime_UTR | 55.0% | |
| TTGTTCTCGCTCGTGGTCAC+CGG | - | chr1_2:48408990-48409009 | Msa0074170:three_prime_UTR | 55.0% | |
| AGCTTACCCTGATGCCGAGA+AGG | - | chr1_2:48409108-48409127 | Msa0074170:CDS | 55.0% | |
| GAGAAGGCCAAGGATAGCCT+TGG | - | chr1_2:48409124-48409143 | Msa0074170:CDS | 55.0% | |
| ACGGATCCCAAGGCTATCCT+TGG | + | chr1_2:48409134-48409153 | None:intergenic | 55.0% | |
| CTTTACCAGGACGGATCCCA+AGG | + | chr1_2:48409144-48409163 | None:intergenic | 55.0% | |
| CTTGGGATCCGTCCTGGTAA+AGG | - | chr1_2:48409142-48409161 | Msa0074170:CDS | 55.0% | |
| ! | CTTGCACCTGGTGGGCATTT+AGG | - | chr1_2:48409304-48409323 | Msa0074170:intron | 55.0% |
| AAGGGAGGAAGCAGCACACA+TGG | + | chr1_2:48410797-48410816 | None:intergenic | 55.0% | |
| GCTACTGCTATCAAGGCTGC+AGG | - | chr1_2:48410927-48410946 | Msa0074170:five_prime_UTR | 55.0% | |
| AGTGACGAGAGGACGAGCTG+CGG | + | chr1_2:48408582-48408601 | None:intergenic | 60.0% | |
| ACGGTGTGGACAGTGACGAG+AGG | + | chr1_2:48408593-48408612 | None:intergenic | 60.0% | |
| TCAGGGATTGGGAGGGAGGT+GGG | + | chr1_2:48408641-48408660 | None:intergenic | 60.0% | |
| ATCAGGGATTGGGAGGGAGG+TGG | + | chr1_2:48408642-48408661 | None:intergenic | 60.0% | |
| GACATCAGGGATTGGGAGGG+AGG | + | chr1_2:48408645-48408664 | None:intergenic | 60.0% | |
| GTTGACGATGTCGGGACGGA+TGG | + | chr1_2:48408678-48408697 | None:intergenic | 60.0% | |
| GATACGGGAGACAGCACGTC+CGG | + | chr1_2:48408792-48408811 | None:intergenic | 60.0% | |
| TCCCGTATCCCTCGTGTTGC+CGG | - | chr1_2:48408803-48408822 | Msa0074170:three_prime_UTR | 60.0% | |
| TCCGGCAACACGAGGGATAC+GGG | + | chr1_2:48408807-48408826 | None:intergenic | 60.0% | |
| CTCCGGCAACACGAGGGATA+CGG | + | chr1_2:48408808-48408827 | None:intergenic | 60.0% | |
| TACCACCTCCGGCAACACGA+GGG | + | chr1_2:48408814-48408833 | None:intergenic | 60.0% | |
| CGAAAGCAGCTTGTCCGGCA+CGG | + | chr1_2:48408841-48408860 | None:intergenic | 60.0% | |
| ! | CGTGCCGGACAAGCTGCTTT+CGG | - | chr1_2:48408839-48408858 | Msa0074170:three_prime_UTR | 60.0% |
| ! | CCTTGGCCTTCTCGGCATCA+GGG | + | chr1_2:48409117-48409136 | None:intergenic | 60.0% |
| ! | TCCTTGGCCTTCTCGGCATC+AGG | + | chr1_2:48409118-48409137 | None:intergenic | 60.0% |
| ! | GATAGCCTTGGGATCCGTCC+TGG | - | chr1_2:48409136-48409155 | Msa0074170:CDS | 60.0% |
| !! | GAGGGAGGTGGGAGTGTCAG+TGG | + | chr1_2:48408630-48408649 | None:intergenic | 65.0% |
| GCTGACGGCGTATGGTTGGC+GGG | + | chr1_2:48408729-48408748 | None:intergenic | 65.0% | |
| GGCTGACGGCGTATGGTTGG+CGG | + | chr1_2:48408730-48408749 | None:intergenic | 65.0% | |
| TGCGGCTGACGGCGTATGGT+TGG | + | chr1_2:48408733-48408752 | None:intergenic | 65.0% | |
| GCTTTGCGGCTGACGGCGTA+TGG | + | chr1_2:48408737-48408756 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGCAAAGC+CGG | - | chr1_2:48408737-48408756 | Msa0074170:three_prime_UTR | 65.0% | |
| ! | GTGACCGGCTTTGCGGCTGA+CGG | + | chr1_2:48408744-48408763 | None:intergenic | 65.0% |
| !! | CTCGGCGGAGGTTTGGTGAC+CGG | + | chr1_2:48408759-48408778 | None:intergenic | 65.0% |
| ACCAAACCTCCGCCGAGTCC+TGG | - | chr1_2:48408762-48408781 | Msa0074170:three_prime_UTR | 65.0% | |
| CCAAACCTCCGCCGAGTCCT+GGG | - | chr1_2:48408763-48408782 | Msa0074170:three_prime_UTR | 65.0% | |
| CAAACCTCCGCCGAGTCCTG+GGG | - | chr1_2:48408764-48408783 | Msa0074170:three_prime_UTR | 65.0% | |
| ACGTCCGGTACCCCAGGACT+CGG | + | chr1_2:48408777-48408796 | None:intergenic | 65.0% | |
| CGTATCCCTCGTGTTGCCGG+AGG | - | chr1_2:48408806-48408825 | Msa0074170:three_prime_UTR | 65.0% | |
| ATCCCTCGTGTTGCCGGAGG+TGG | - | chr1_2:48408809-48408828 | Msa0074170:three_prime_UTR | 65.0% | |
| GTACCACCTCCGGCAACACG+AGG | + | chr1_2:48408815-48408834 | None:intergenic | 65.0% | |
| AGCAGCTTGTCCGGCACGGT+GGG | + | chr1_2:48408837-48408856 | None:intergenic | 65.0% | |
| AAGCAGCTTGTCCGGCACGG+TGG | + | chr1_2:48408838-48408857 | None:intergenic | 65.0% | |
| CCCTGATGCCGAGAAGGCCA+AGG | - | chr1_2:48409114-48409133 | Msa0074170:CDS | 65.0% | |
| GACGAGAGGACGAGCTGCGG+CGG | + | chr1_2:48408579-48408598 | None:intergenic | 70.0% | |
| CCCAGGACTCGGCGGAGGTT+TGG | + | chr1_2:48408766-48408785 | None:intergenic | 70.0% | |
| TCCGCCGAGTCCTGGGGTAC+CGG | - | chr1_2:48408770-48408789 | Msa0074170:three_prime_UTR | 70.0% | |
| TCCGGTACCCCAGGACTCGG+CGG | + | chr1_2:48408774-48408793 | None:intergenic | 70.0% | |
| GACAGCACGTCCGGTACCCC+AGG | + | chr1_2:48408783-48408802 | None:intergenic | 70.0% | |
| GGCACGGTGGGTACCACCTC+CGG | + | chr1_2:48408825-48408844 | None:intergenic | 70.0% | |
| GGAGGTGGTACCCACCGTGC+CGG | - | chr1_2:48408824-48408843 | Msa0074170:three_prime_UTR | 70.0% | |
| GAGAGGACGAGCTGCGGCGG+CGG | + | chr1_2:48408576-48408595 | None:intergenic | 75.0% | |
| GGTACCCCAGGACTCGGCGG+AGG | + | chr1_2:48408771-48408790 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 48408510 | 48411618 | 48408510 | ID=Msa0074170;Name=Msa0074170 |
| chr1_2 | mRNA | 48408510 | 48411618 | 48408510 | ID=Msa0074170-mRNA-1;Parent=Msa0074170;Name=Msa0074170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=925|0|0.66|0.66|1|1|3|584|119 |
| chr1_2 | exon | 48408510 | 48409207 | 48408510 | ID=Msa0074170-mRNA-1:exon:14742;Parent=Msa0074170-mRNA-1 |
| chr1_2 | exon | 48409689 | 48409694 | 48409689 | ID=Msa0074170-mRNA-1:exon:14741;Parent=Msa0074170-mRNA-1 |
| chr1_2 | exon | 48410454 | 48411618 | 48410454 | ID=Msa0074170-mRNA-1:exon:14740;Parent=Msa0074170-mRNA-1 |
| chr1_2 | five_prime_UTR | 48410694 | 48411618 | 48410694 | ID=Msa0074170-mRNA-1:five_prime_utr;Parent=Msa0074170-mRNA-1 |
| chr1_2 | CDS | 48410454 | 48410693 | 48410454 | ID=Msa0074170-mRNA-1:cds;Parent=Msa0074170-mRNA-1 |
| chr1_2 | CDS | 48409689 | 48409694 | 48409689 | ID=Msa0074170-mRNA-1:cds;Parent=Msa0074170-mRNA-1 |
| chr1_2 | CDS | 48409094 | 48409207 | 48409094 | ID=Msa0074170-mRNA-1:cds;Parent=Msa0074170-mRNA-1 |
| chr1_2 | three_prime_UTR | 48408510 | 48409093 | 48408510 | ID=Msa0074170-mRNA-1:three_prime_utr;Parent=Msa0074170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
