AlfalfaGEDB | Msa0116690

M. sativa cultivar zhongmu-4 / Msa0116690

KEGG: K02930
GO: GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042221 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0070013 GO:0071704 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00573.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116690	XP_013468257.1	99.257	404	3	0	3	406	2	405	0.0	820

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116690	sp\|Q9SF40\|RL4A_ARATH	82.266	406	72	0	1	406	1	406	0.0	693

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0116690	A0A072VJR8	99.257	404	3	0	3	406	2	405	0.0	820

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0026270	Msa0116690	0.844132	9.133066e-59	-8.615850e-47
Msa0042510	Msa0116690	0.818756	1.660539e-52	-8.615850e-47
Msa0065330	Msa0116690	0.801063	1.074251e-48	-8.615850e-47
Msa0074170	Msa0116690	0.847449	1.148262e-59	-8.615850e-47
Msa0079560	Msa0116690	0.811598	6.462021e-51	-8.615850e-47
Msa0116600	Msa0116690	0.995243	2.315432e-214	-8.615850e-47
Msa0116690	Msa0127230	0.805573	1.250340e-49	-8.615850e-47
Msa0116690	Msa0132460	0.852621	4.093383e-61	-8.615850e-47
Msa0116690	Msa0156930	0.818396	2.003549e-52	-8.615850e-47
Msa0116690	Msa0182050	0.854899	9.047420e-62	-8.615850e-47
Msa0116690	Msa0182100	0.829757	4.305612e-55	-8.615850e-47
Msa0116690	Msa0188740	0.854205	1.437352e-61	-8.615850e-47
Msa0116690	Msa0192300	0.866616	2.502674e-65	-8.615850e-47
Msa0116690	Msa0270160	0.857889	1.199503e-62	-8.615850e-47
Msa0116690	Msa0301250	0.852212	5.354099e-61	-8.615850e-47
Msa0116690	Msa0313060	0.867184	1.649648e-65	-8.615850e-47
Msa0116690	Msa0371490	0.817065	3.999604e-52	-8.615850e-47
Msa0116690	Msa0377520	0.808613	2.841553e-50	-8.615850e-47
Msa0116690	Msa0387290	0.822647	2.117730e-53	-8.615850e-47
Msa0116690	Msa0426090	0.826384	2.794152e-54	-8.615850e-47
Msa0116690	Msa0426250	0.814405	1.566387e-51	-8.615850e-47
Msa0116690	Msa0426940	0.820109	8.160120e-53	-8.615850e-47
Msa0116690	Msa0472480	0.826896	2.109095e-54	-8.615850e-47
Msa0116690	Msa0482560	0.825759	3.933301e-54	-8.615850e-47
Msa0116690	Msa0485220	0.823962	1.044431e-53	-8.615850e-47
Msa0116690	Msa0511760	0.818586	1.814820e-52	-8.615850e-47
Msa0116690	Msa0547920	0.809141	2.191141e-50	-8.615850e-47
Msa0116690	Msa0563540	0.810862	9.334735e-51	-8.615850e-47
Msa0116690	Msa0573550	0.840661	7.600281e-58	-8.615850e-47
Msa0116690	Msa0578010	0.837144	6.182440e-57	-8.615850e-47
Msa0116690	Msa0589160	0.816387	5.676765e-52	-8.615850e-47
Msa0116690	Msa0597240	0.825877	3.688143e-54	-8.615850e-47
Msa0116690	Msa0602900	0.823749	1.171180e-53	-8.615850e-47
Msa0116690	Msa0619230	0.828757	7.528340e-55	-8.615850e-47
Msa0116690	Msa0621190	0.839220	1.805144e-57	-8.615850e-47
Msa0116690	Msa0643960	0.818755	1.661086e-52	-8.615850e-47
Msa0116690	Msa0656450	0.832026	1.195055e-55	-8.615850e-47
Msa0116690	Msa0694400	0.829389	5.290055e-55	-8.615850e-47
Msa0116690	Msa0708630	0.854321	1.330201e-61	-8.615850e-47
Msa0116690	Msa0790450	0.852858	3.503241e-61	-8.615850e-47
Msa0116690	Msa0929700	0.814656	1.378617e-51	-8.615850e-47
Msa0116690	Msa0930100	0.879062	1.692535e-69	-8.615850e-47
Msa0116690	Msa0930360	0.910903	1.111803e-82	-8.615850e-47
Msa0116690	Msa0930790	0.875472	2.999596e-68	-8.615850e-47
Msa0116690	Msa1041830	0.800330	1.516269e-48	-8.615850e-47
Msa0116690	Msa1068660	0.800904	1.157877e-48	-8.615850e-47
Msa0116690	Msa1085850	0.811257	7.662253e-51	-8.615850e-47
Msa0116690	Msa1116940	0.805918	1.058348e-49	-8.615850e-47
Msa0116690	Msa1124980	0.804102	2.537257e-49	-8.615850e-47
Msa0116690	Msa1126690	0.824841	6.487890e-54	-8.615850e-47
Msa0116690	Msa1136880	0.808160	3.549209e-50	-8.615850e-47
Msa0116690	Msa1144630	0.831693	1.444154e-55	-8.615850e-47
Msa0116690	Msa1167360	0.808012	3.816286e-50	-8.615850e-47
Msa0116690	Msa1213850	0.819548	1.096326e-52	-8.615850e-47
Msa0116690	Msa1218610	0.810609	1.058782e-50	-8.615850e-47
Msa0116690	Msa1237040	0.862393	5.232133e-64	-8.615850e-47
Msa0116690	Msa1278130	0.819695	1.014955e-52	-8.615850e-47
Msa0116690	Msa1284060	0.810483	1.126885e-50	-8.615850e-47
Msa0116690	Msa1317390	0.866760	2.252828e-65	-8.615850e-47
Msa0116690	Msa1351020	0.806488	8.026659e-50	-8.615850e-47
Msa0116690	Msa1351910	0.832264	1.043947e-55	-8.615850e-47
Msa0116690	Msa1363930	0.832207	1.078594e-55	-8.615850e-47
Msa0116690	Msa1385480	0.815273	1.005855e-51	-8.615850e-47
Msa0116690	Msa1387750	0.838229	3.254889e-57	-8.615850e-47
Msa0116690	Msa1390760	0.829261	5.681912e-55	-8.615850e-47
Msa0116690	Msa1403520	0.838170	3.371173e-57	-8.615850e-47
Msa0116690	Msa1413570	0.836083	1.152146e-56	-8.615850e-47
Msa0116690	Msa1450560	0.854769	9.874520e-62	-8.615850e-47
Msa0116690	Msa1453530	0.818707	1.703166e-52	-8.615850e-47
Msa0116690	Msa1463510	0.835663	1.472279e-56	-8.615850e-47
Msa0116690	Msa1465890	0.846483	2.112038e-59	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	bit score
Msa0116690	MtrunA17_Chr1g0181761	99.257	404	3	3	406	2	405	820
Msa0116690	MtrunA17_Chr1g0168531	93.842	406	25	1	406	46	451	740
Msa0116690	MtrunA17_Chr5g0407811	93.250	400	27	7	406	9	408	731

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0116690	AT3G09630.1	82.266	406	72	0	1	406	1	406	693
Msa0116690	AT3G09630.2	82.020	406	72	1	1	406	1	405	687
Msa0116690	AT5G02870.1	81.034	406	77	0	1	406	2	407	681
Msa0116690	AT5G02870.2	80.788	406	77	1	1	406	2	406	674

Find 159 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAGAAGTTGGATTCCATTTA+TGG	0.101086	1_3:+35797887	Msa0116690:CDS
GAAAATGAAATGGTGGAATT+AGG	0.182758	1_3:-35797050	None:intergenic
AAGGGTCCTTTGATTGTTTA+TGG	0.212085	1_3:+35797725	Msa0116690:CDS
CTTGCACCTGGTGGGCATTT+AGG	0.222485	1_3:+35797833	Msa0116690:CDS
AAATGGTGGAATTAGGGTTT+TGG	0.248171	1_3:-35797043	None:intergenic
ATTCTCATTTGCCGGTGTTC+TGG	0.251159	1_3:-35799979	None:intergenic
ACCAAACCTCCGCCGAGTCC+TGG	0.279177	1_3:+35797291	Msa0116690:CDS
CTACCCGGATCTGGCGTAAA+TGG	0.282086	1_3:+35797423	Msa0116690:CDS
CCTGAGTTTCCTCTTGTTGT+TGG	0.285780	1_3:+35797554	Msa0116690:CDS
TCCAATATTTCGACTTCATA+TGG	0.294449	1_3:+35799640	Msa0116690:three_prime_UTR
AAAATGAAATGGTGGAATTA+GGG	0.309101	1_3:-35797049	None:intergenic
TTCTCATTTGCCGGTGTTCT+GGG	0.309644	1_3:-35799978	None:intergenic
TCCCGTATCCCTCGTGTTGC+CGG	0.310391	1_3:+35797332	Msa0116690:CDS
TCCATATGAAGTCGAAATAT+TGG	0.314726	1_3:-35799641	None:intergenic
ATTCAAATTTGTGTTATAAT+CGG	0.325569	1_3:+35800039	Msa0116690:three_prime_UTR
CTAATTGAATGTTGTTCTCT+AGG	0.334090	1_3:+35799508	Msa0116690:three_prime_UTR
ATTTAGGAAGATTTGTGATT+TGG	0.337375	1_3:+35797849	Msa0116690:CDS
CTTGTCAAAAGAACCATAAA+TGG	0.363253	1_3:-35797900	None:intergenic
TCCTTCGCCTTCTCGGCATC+AGG	0.364051	1_3:-35797644	None:intergenic
CCCAGGACTCGGCGGAGGTT+TGG	0.365068	1_3:-35797292	None:intergenic
CTCTTAGCAGTCTTAGCATA+AGG	0.391556	1_3:-35798103	None:intergenic
TTTGAGATTATGATATTGTA+AGG	0.394038	1_3:+35799553	Msa0116690:three_prime_UTR
AGAAGGGTTATGTGCTTCCT+AGG	0.398377	1_3:+35797936	Msa0116690:CDS
GAAGAGGAAGACTGTCTCTA+AGG	0.403102	1_3:+35798183	Msa0116690:CDS
ATCAGGGATTGGGAGGGAGG+TGG	0.411958	1_3:-35797168	None:intergenic
ATGAGATTCAGAGTGTTGTT+AGG	0.418477	1_3:+35798002	Msa0116690:CDS
TGTTTGCTCCTACCCGGATC+TGG	0.420217	1_3:+35797414	Msa0116690:CDS
GGCACGGTGGGTACCACCTC+CGG	0.421789	1_3:-35797351	None:intergenic
ATGGCTGCACGCATGACATC+AGG	0.422229	1_3:-35797185	None:intergenic
CTCTTCACATCCTTCTTCAC+AGG	0.423968	1_3:-35798025	None:intergenic
AAGGCTATCCTTCGCCTTCT+CGG	0.425608	1_3:-35797651	None:intergenic
CCAAACCTCCGCCGAGTCCT+GGG	0.426021	1_3:+35797292	Msa0116690:CDS
TTTCACTGCTTTCGCTCCTT+CGG	0.428218	1_3:-35797750	None:intergenic
TTGTGAGACACCCAACCATT+TGG	0.429854	1_3:-35799451	None:intergenic
ATCCCTCGTGTTGCCGGAGG+TGG	0.430060	1_3:+35797338	Msa0116690:CDS
TAAGACTGCTTTCGAGAAGT+TGG	0.434224	1_3:+35797874	Msa0116690:CDS
GTTGTTGGTGATTCTGCTGA+AGG	0.435579	1_3:+35797569	Msa0116690:CDS
GGCTGACGGCGTATGGTTGA+CGG	0.438192	1_3:-35797256	None:intergenic
AAAAGCATGGTACAATACTA+TGG	0.446415	1_3:+35799392	Msa0116690:CDS
GAGAGGACGAGCTGCGGCGG+CGG	0.447733	1_3:-35797102	None:intergenic
CGTGCCGGACAAGCTGCTTT+CGG	0.452166	1_3:+35797368	Msa0116690:CDS
CTCCGGCAACACGAGGGATA+CGG	0.453243	1_3:-35797334	None:intergenic
CTCGGCGGAGGTTTGGTGAC+CGG	0.453892	1_3:-35797285	None:intergenic
GACAACTTCTCCAAATGGTT+GGG	0.457303	1_3:+35799441	Msa0116690:CDS
TGGACGAAGTTGACGATGTC+GGG	0.461251	1_3:-35797212	None:intergenic
CACGCATGACATCAGGGATT+GGG	0.461277	1_3:-35797178	None:intergenic
TCACTACTCTAATGTAGCTC+TGG	0.464298	1_3:+35799753	Msa0116690:three_prime_UTR
GTCACTGTCCACACCGTTGA+AGG	0.464341	1_3:+35797125	Msa0116690:CDS
CTTTGCTTGCTGAAGCTGAA+AGG	0.471531	1_3:+35798131	Msa0116690:CDS
TCCGGCAACACGAGGGATAC+GGG	0.473737	1_3:-35797333	None:intergenic
CGACAACTTCTCCAAATGGT+TGG	0.475554	1_3:+35799440	Msa0116690:CDS
CAAAATTTGAGTGGGGCTAA+AGG	0.478747	1_3:-35799695	None:intergenic
GCACGCATGACATCAGGGAT+TGG	0.480128	1_3:-35797179	None:intergenic
AGATGTTCATCACGATCAAC+TGG	0.482386	1_3:-35799801	None:intergenic
TTGTTCTCGCTCGTGGTCAC+CGG	0.483198	1_3:+35797519	Msa0116690:CDS
GAGGGAGGTGGGAGTGTCAG+TGG	0.486549	1_3:-35797156	None:intergenic
AATTCGACAACTTCTCCAAA+TGG	0.487072	1_3:+35799436	Msa0116690:CDS
GTTACCGAAAGCAGCTTGTC+CGG	0.489007	1_3:-35797372	None:intergenic
GCTGACGGCGTATGGTTGAC+GGG	0.489659	1_3:-35797255	None:intergenic
TTTGCTTGCTGAAGCTGAAA+GGG	0.491694	1_3:+35798132	Msa0116690:CDS
CTTGGGATCCGTCCTGGTAA+AGG	0.491818	1_3:+35797671	Msa0116690:CDS
GCTTTGCGGCTGACGGCGTA+TGG	0.494149	1_3:-35797263	None:intergenic
CCGTAGGTATATCTCTCGTA+AGG	0.494610	1_3:+35797706	Msa0116690:CDS
GGTGCCATTTACGCCAGATC+CGG	0.497461	1_3:-35797427	None:intergenic
AAGATTCAACCTTTCAACAT+TGG	0.499445	1_3:-35797804	None:intergenic
TGTGCTTCCTAGGGCTAAGA+TGG	0.502217	1_3:+35797946	Msa0116690:CDS
CAAGCCTTCGGAGAAGAAGA+AGG	0.503462	1_3:+35797919	Msa0116690:CDS
GGAAGAAGCTACTGCTATCA+AGG	0.505228	1_3:+35799362	Msa0116690:intron
TCCGCCGAGTCCTGGGGTAC+CGG	0.506294	1_3:+35797299	Msa0116690:CDS
TGGGAATTCACCATTCTGAA+TGG	0.508333	1_3:-35799959	None:intergenic
TTGTATGTAATGCTTCAAGA+AGG	0.508678	1_3:+35799860	Msa0116690:three_prime_UTR
TCAGGGATTGGGAGGGAGGT+GGG	0.510339	1_3:-35797167	None:intergenic
GTCGCATGTTTGCTCCTACC+CGG	0.517664	1_3:+35797408	Msa0116690:CDS
AGTGGCCATGTCACCTTCAA+CGG	0.518640	1_3:-35797138	None:intergenic
AGGAAAAGCTTGATAAGAAG+AGG	0.518903	1_3:+35798167	Msa0116690:CDS
AGGTTTGGTGACCGGCTTTG+CGG	0.519498	1_3:-35797277	None:intergenic
GACAGCACGTCCGGTACCCC+AGG	0.521322	1_3:-35797309	None:intergenic
TAACCCTTCTTCTTCTCCGA+AGG	0.522957	1_3:-35797923	None:intergenic
TACGCCGTCAGCCGCAAAGC+CGG	0.523016	1_3:+35797266	Msa0116690:CDS
TCAGTATGTTCAACAGAAGA+TGG	0.523041	1_3:-35799723	None:intergenic
GACATCAGGGATTGGGAGGG+AGG	0.523295	1_3:-35797171	None:intergenic
GATAGCCTTGGGATCCGTCC+TGG	0.524843	1_3:+35797665	Msa0116690:CDS
CAAAGGATTCTTCTTCAAAG+TGG	0.526268	1_3:-35798050	None:intergenic
AGAAGGCGAAGGATAGCCTT+GGG	0.528805	1_3:+35797654	Msa0116690:CDS
GTTGACGATGTCGGGACGGA+TGG	0.533971	1_3:-35797204	None:intergenic
CCTTCACTTGTTCTCGCTCG+TGG	0.537661	1_3:+35797512	Msa0116690:CDS
TGGTGAATTCTGATTTGACT+AGG	0.539110	1_3:+35797966	Msa0116690:CDS
AGCAGCTTGTCCGGCACGGT+GGG	0.541824	1_3:-35797363	None:intergenic
TGTTGTTAGGCCTGTGAAGA+AGG	0.543579	1_3:+35798015	Msa0116690:CDS
GTGACCGGCTTTGCGGCTGA+CGG	0.544837	1_3:-35797270	None:intergenic
GATACGGGAGACAGCACGTC+CGG	0.546656	1_3:-35797318	None:intergenic
GAGAAGGCGAAGGATAGCCT+TGG	0.548067	1_3:+35797653	Msa0116690:CDS
TTGATTGTTTATGGTACCGA+AGG	0.552842	1_3:+35797734	Msa0116690:CDS
CCTTCGCCTTCTCGGCATCA+GGG	0.553120	1_3:-35797643	None:intergenic
TGGCAACGCAAAATTTGAGT+GGG	0.560260	1_3:-35799703	None:intergenic
GAATTCACCATCTTAGCCCT+AGG	0.564088	1_3:-35797953	None:intergenic
ACTCAGGAACAGTTTCGATC+CGG	0.567598	1_3:-35797538	None:intergenic
GCTACTGCTATCAAGGCTGC+AGG	0.570583	1_3:+35799369	Msa0116690:CDS
CCCTGATGCCGAGAAGGCGA+AGG	0.570637	1_3:+35797643	Msa0116690:CDS
ACGTCCGGTACCCCAGGACT+CGG	0.570995	1_3:-35797303	None:intergenic
TGAAGGTGTTGAGAAGACTA+AGG	0.571093	1_3:+35797586	Msa0116690:CDS
AGAATCTCAATGTTATGTTG+AGG	0.573663	1_3:+35798074	Msa0116690:CDS
CGTAGGTATATCTCTCGTAA+GGG	0.577073	1_3:+35797707	Msa0116690:CDS
GCAGAATCACCAACAACAAG+AGG	0.578714	1_3:-35797563	None:intergenic
GTGGACGAAGTTGACGATGT+CGG	0.580395	1_3:-35797213	None:intergenic
TGTATGTAATGCTTCAAGAA+GGG	0.582120	1_3:+35799861	Msa0116690:three_prime_UTR
AGCTTACCCTGATGCCGAGA+AGG	0.582607	1_3:+35797637	Msa0116690:CDS
GGTACCCCAGGACTCGGCGG+AGG	0.582954	1_3:-35797297	None:intergenic
CTTTACCAGGACGGATCCCA+AGG	0.583493	1_3:-35797670	None:intergenic
GTGCCATTTACGCCAGATCC+GGG	0.584645	1_3:-35797426	None:intergenic
CTTATGCTAAGACTGCTAAG+AGG	0.584978	1_3:+35798104	Msa0116690:CDS
GACGAGAGGACGAGCTGCGG+CGG	0.586898	1_3:-35797105	None:intergenic
TGCTAAGACTGCTAAGAGGA+TGG	0.588122	1_3:+35798108	Msa0116690:CDS
TCAGAGAGAAAATGAAATGG+TGG	0.589890	1_3:-35797057	None:intergenic
TCGGTACCATAAACAATCAA+AGG	0.593031	1_3:-35797731	None:intergenic
ACAGAGATCTAGCTCATCTG+TGG	0.594905	1_3:+35799884	Msa0116690:three_prime_UTR
ATAACATTGAGATTCTTCAA+AGG	0.595302	1_3:-35798067	None:intergenic
CATTTACGCCAGATCCGGGT+AGG	0.597970	1_3:-35797422	None:intergenic
TGAAAGGGTTAAGTCCAAGA+AGG	0.600060	1_3:+35798147	Msa0116690:CDS
GCATGACATCAGGGATTGGG+AGG	0.602783	1_3:-35797175	None:intergenic
AAGGTAAAATGCGTAACCGT+AGG	0.603588	1_3:+35797690	Msa0116690:CDS
GGAGGTGGTACCCACCGTGC+CGG	0.603632	1_3:+35797353	Msa0116690:CDS
GTACCACCTCCGGCAACACG+AGG	0.605092	1_3:-35797341	None:intergenic
TGTTCAGAGAGAAAATGAAA+TGG	0.605978	1_3:-35797060	None:intergenic
AATCTTCCTAAATGCCCACC+AGG	0.605991	1_3:-35797839	None:intergenic
CCAACAACAAGAGGAAACTC+AGG	0.606988	1_3:-35797554	None:intergenic
AAATGAGAATGCACAAAATG+CGG	0.607301	1_3:+35799992	Msa0116690:three_prime_UTR
CTGTGAAGAAGGATGTGAAG+AGG	0.612591	1_3:+35798026	Msa0116690:CDS
CCACACCGTTGAAGGTGACA+TGG	0.613167	1_3:+35797133	Msa0116690:CDS
TGTGAAGAAGGATGTGAAGA+GGG	0.613222	1_3:+35798027	Msa0116690:CDS
GAAGGGTTATGTGCTTCCTA+GGG	0.613508	1_3:+35797937	Msa0116690:CDS
CGAAAGCAGCTTGTCCGGCA+CGG	0.614513	1_3:-35797367	None:intergenic
CGAAGTTGACGATGTCGGGA+CGG	0.617896	1_3:-35797208	None:intergenic
TTGAGATCACCAATGTTGAA+AGG	0.623070	1_3:+35797795	Msa0116690:CDS
AAGCCTTCGGAGAAGAAGAA+GGG	0.625782	1_3:+35797920	Msa0116690:CDS
TCAAGGCTGCAGGAAAAGCA+TGG	0.627406	1_3:+35799379	Msa0116690:CDS
TGGCTGCACGCATGACATCA+GGG	0.628185	1_3:-35797184	None:intergenic
CGTATCCCTCGTGTTGCCGG+AGG	0.628937	1_3:+35797335	Msa0116690:CDS
CCACGAGCGAGAACAAGTGA+AGG	0.635968	1_3:-35797512	None:intergenic
CAAACCTCCGCCGAGTCCTG+GGG	0.638408	1_3:+35797293	Msa0116690:CDS
ATGGCAACGCAAAATTTGAG+TGG	0.639402	1_3:-35799704	None:intergenic
CATGACATCAGGGATTGGGA+GGG	0.640964	1_3:-35797174	None:intergenic
TTCGGTAACATGTGCCGTGG+TGG	0.641371	1_3:+35797386	Msa0116690:CDS
CCATGTCACCTTCAACGGTG+TGG	0.644494	1_3:-35797133	None:intergenic
CAGAGATCTAGCTCATCTGT+GGG	0.650289	1_3:+35799885	Msa0116690:three_prime_UTR
AAATATTGGATTACAACGAG+AGG	0.654014	1_3:-35799627	None:intergenic
AAGCAGCTTGTCCGGCACGG+TGG	0.654435	1_3:-35797364	None:intergenic
AGTGACGAGAGGACGAGCTG+CGG	0.658727	1_3:-35797108	None:intergenic
ATGGTGAATTCCCAGAACAC+CGG	0.661262	1_3:+35799968	Msa0116690:three_prime_UTR
TCTCACAATGAAGTGTCTCA+TGG	0.672237	1_3:+35799466	Msa0116690:exon
TTTGAGTGGGGCTAAAGGTG+TGG	0.674405	1_3:-35799690	None:intergenic
ACGGTGTGGACAGTGACGAG+AGG	0.675130	1_3:-35797119	None:intergenic
ACATTGGTGATCTCAACACC+AGG	0.677167	1_3:-35797788	None:intergenic
TCCGGTACCCCAGGACTCGG+CGG	0.686621	1_3:-35797300	None:intergenic
GGCAACGCAAAATTTGAGTG+GGG	0.695251	1_3:-35799702	None:intergenic
GCTTTCGGTAACATGTGCCG+TGG	0.703272	1_3:+35797383	Msa0116690:CDS
CCTTACGAGAGATATACCTA+CGG	0.703573	1_3:-35797706	None:intergenic
TACCACCTCCGGCAACACGA+GGG	0.703891	1_3:-35797340	None:intergenic
GAGCAAACATGCGACCACCA+CGG	0.722368	1_3:-35797400	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATCATTTTCAAATTCTAAA+GGG	-	chr1_3:35798498-35798517	None:intergenic	15.0%
!!!	TTATCATTTTCAAATTCTAA+AGG	-	chr1_3:35798499-35798518	None:intergenic	15.0%
!!	AAAATGATAATCATGTATAT+TGG	+	chr1_3:35798509-35798528	Msa0116690:intron	15.0%
!!	TGTATAAATGATATTACTAA+TGG	+	chr1_3:35799039-35799058	Msa0116690:intron	15.0%
!!	ACTAATTAACAACAATGTAA+TGG	-	chr1_3:35798258-35798277	None:intergenic	20.0%
!!	ATTTGAGTGAAGATTTAATT+TGG	+	chr1_3:35798363-35798382	Msa0116690:intron	20.0%
!!!	TTCTAAAATGAAACTTAGAT+TGG	+	chr1_3:35798422-35798441	Msa0116690:intron	20.0%
!!!	ATTTTGAAATATTGTTGATG+TGG	+	chr1_3:35798708-35798727	Msa0116690:intron	20.0%
!!!	TTTTGAAATATTGTTGATGT+GGG	+	chr1_3:35798709-35798728	Msa0116690:intron	20.0%
!!	ATAATATTGTATGTTGGAAT+TGG	-	chr1_3:35799088-35799107	None:intergenic	20.0%
!!	ATTCCAACATACAATATTAT+AGG	+	chr1_3:35799088-35799107	Msa0116690:intron	20.0%
!!	TAACCTATAATATTGTATGT+TGG	-	chr1_3:35799094-35799113	None:intergenic	20.0%
!!!	TTTGAGATTATGATATTGTA+AGG	+	chr1_3:35799553-35799572	Msa0116690:three_prime_UTR	20.0%
!!	AAAATGAAATGGTGGAATTA+GGG	-	chr1_3:35797052-35797071	None:intergenic	25.0%
!!!	TCTGATTCACATTGATTTTA+CGG	-	chr1_3:35797451-35797470	None:intergenic	25.0%
!!!	ATCAAGCTTTTGAAATCAAT+TGG	+	chr1_3:35797614-35797633	Msa0116690:CDS	25.0%
!	ATTTAGGAAGATTTGTGATT+TGG	+	chr1_3:35797849-35797868	Msa0116690:CDS	25.0%
!	ATAACATTGAGATTCTTCAA+AGG	-	chr1_3:35798070-35798089	None:intergenic	25.0%
!!	TTTAGAATATCTATAACGTG+AGG	-	chr1_3:35798409-35798428	None:intergenic	25.0%
!	TTAGATTGGTAAGCAATAAT+AGG	+	chr1_3:35798436-35798455	Msa0116690:intron	25.0%
!!!	ATTCACCTTTTGTTGTTTTA+TGG	+	chr1_3:35798682-35798701	Msa0116690:intron	25.0%
!	ATGATCCATAAAACAACAAA+AGG	-	chr1_3:35798690-35798709	None:intergenic	25.0%
!!	TTTGAAATATTGTTGATGTG+GGG	+	chr1_3:35798710-35798729	Msa0116690:intron	25.0%
!!	CTTTAAAAGAGTTCATCAAA+TGG	-	chr1_3:35798834-35798853	None:intergenic	25.0%
!	ACAAAGATATTCAACTAACA+TGG	-	chr1_3:35799300-35799319	None:intergenic	25.0%
!!	AGGTTTTACTTTATTGTCTT+TGG	+	chr1_3:35799528-35799547	Msa0116690:three_prime_UTR	25.0%
!	GGAAAAAAATCTTTCATATC+AGG	-	chr1_3:35799609-35799628	None:intergenic	25.0%
!!	TAAAAAAGTCGCAAATGTTT+TGG	-	chr1_3:35800018-35800037	None:intergenic	25.0%
!	GAAAATGAAATGGTGGAATT+AGG	-	chr1_3:35797053-35797072	None:intergenic	30.0%
	TGTTCAGAGAGAAAATGAAA+TGG	-	chr1_3:35797063-35797082	None:intergenic	30.0%
	AAGATTCAACCTTTCAACAT+TGG	-	chr1_3:35797807-35797826	None:intergenic	30.0%
	CTTGTCAAAAGAACCATAAA+TGG	-	chr1_3:35797903-35797922	None:intergenic	30.0%
	AGAATCTCAATGTTATGTTG+AGG	+	chr1_3:35798074-35798093	Msa0116690:CDS	30.0%
	GAGGACTAAAACAAATTCAA+GGG	-	chr1_3:35798390-35798409	None:intergenic	30.0%
	TGAGGACTAAAACAAATTCA+AGG	-	chr1_3:35798391-35798410	None:intergenic	30.0%
	CATGCTTGACATTATTAACT+TGG	+	chr1_3:35798556-35798575	Msa0116690:intron	30.0%
	ATCTCTCATTTCCAATATGA+TGG	+	chr1_3:35798589-35798608	Msa0116690:intron	30.0%
	TAATGTCAATGCCATCATAT+TGG	-	chr1_3:35798603-35798622	None:intergenic	30.0%
!	GAAATGTATTTGAAACCAAG+TGG	-	chr1_3:35798627-35798646	None:intergenic	30.0%
	TTGAAATATTGTTGATGTGG+GGG	+	chr1_3:35798711-35798730	Msa0116690:intron	30.0%
	ACAAGAGTGAATACACAATT+TGG	-	chr1_3:35798775-35798794	None:intergenic	30.0%
!	AGAGTTCATCAAATGGATTT+GGG	-	chr1_3:35798827-35798846	None:intergenic	30.0%
!	AAGAGTTCATCAAATGGATT+TGG	-	chr1_3:35798828-35798847	None:intergenic	30.0%
!!!	TCATTTTTAGTGTTACTTGC+AGG	+	chr1_3:35798861-35798880	Msa0116690:intron	30.0%
!!!	ATAGAGACTGATTTGCTTTT+TGG	+	chr1_3:35799001-35799020	Msa0116690:intron	30.0%
!!!	TTTTTGCTGTTTGTCTACTT+TGG	+	chr1_3:35799267-35799286	Msa0116690:intron	30.0%
!	AAAAGCATGGTACAATACTA+TGG	+	chr1_3:35799392-35799411	Msa0116690:CDS	30.0%
	CTAATTGAATGTTGTTCTCT+AGG	+	chr1_3:35799508-35799527	Msa0116690:three_prime_UTR	30.0%
	AAATATTGGATTACAACGAG+AGG	-	chr1_3:35799630-35799649	None:intergenic	30.0%
	TCCAATATTTCGACTTCATA+TGG	+	chr1_3:35799640-35799659	Msa0116690:three_prime_UTR	30.0%
	TCCATATGAAGTCGAAATAT+TGG	-	chr1_3:35799644-35799663	None:intergenic	30.0%
	TTGTATGTAATGCTTCAAGA+AGG	+	chr1_3:35799860-35799879	Msa0116690:three_prime_UTR	30.0%
	TGTATGTAATGCTTCAAGAA+GGG	+	chr1_3:35799861-35799880	Msa0116690:three_prime_UTR	30.0%
!!!	CTTATTTTGACCATTCAGAA+TGG	+	chr1_3:35799949-35799968	Msa0116690:three_prime_UTR	30.0%
	AAATGAGAATGCACAAAATG+CGG	+	chr1_3:35799992-35800011	Msa0116690:three_prime_UTR	30.0%
!!	AATGGTGGAATTAGGGTTTT+GGG	-	chr1_3:35797045-35797064	None:intergenic	35.0%
!!	AAATGGTGGAATTAGGGTTT+TGG	-	chr1_3:35797046-35797065	None:intergenic	35.0%
	TCAGAGAGAAAATGAAATGG+TGG	-	chr1_3:35797060-35797079	None:intergenic	35.0%
!	TTACGCATTTTACCTTTACC+AGG	-	chr1_3:35797686-35797705	None:intergenic	35.0%
	AAGGGTCCTTTGATTGTTTA+TGG	+	chr1_3:35797725-35797744	Msa0116690:CDS	35.0%
	TCGGTACCATAAACAATCAA+AGG	-	chr1_3:35797734-35797753	None:intergenic	35.0%
!	TTGATTGTTTATGGTACCGA+AGG	+	chr1_3:35797734-35797753	Msa0116690:CDS	35.0%
!	AAAGCTTTTCGCAATATTCC+TGG	+	chr1_3:35797770-35797789	Msa0116690:CDS	35.0%
	TTGAGATCACCAATGTTGAA+AGG	+	chr1_3:35797795-35797814	Msa0116690:CDS	35.0%
	GAGAAGTTGGATTCCATTTA+TGG	+	chr1_3:35797887-35797906	Msa0116690:CDS	35.0%
!	TGGTGAATTCTGATTTGACT+AGG	+	chr1_3:35797966-35797985	Msa0116690:CDS	35.0%
!!	ATGAGATTCAGAGTGTTGTT+AGG	+	chr1_3:35798002-35798021	Msa0116690:CDS	35.0%
	CAAAGGATTCTTCTTCAAAG+TGG	-	chr1_3:35798053-35798072	None:intergenic	35.0%
!	CTTATCAAGCTTTTCCTTCT+TGG	-	chr1_3:35798164-35798183	None:intergenic	35.0%
	AGGAAAAGCTTGATAAGAAG+AGG	+	chr1_3:35798167-35798186	Msa0116690:CDS	35.0%
	ACTTGCAGGTTTAGATTGAT+TGG	+	chr1_3:35798875-35798894	Msa0116690:intron	35.0%
	CAACCATGTATGAAGATGAA+TGG	+	chr1_3:35799204-35799223	Msa0116690:intron	35.0%
	CAACCATTCATCTTCATACA+TGG	-	chr1_3:35799210-35799229	None:intergenic	35.0%
	ACAGCAAAAACATGCATCAA+GGG	-	chr1_3:35799257-35799276	None:intergenic	35.0%
	AACAGCAAAAACATGCATCA+AGG	-	chr1_3:35799258-35799277	None:intergenic	35.0%
	AATTCGACAACTTCTCCAAA+TGG	+	chr1_3:35799436-35799455	Msa0116690:CDS	35.0%
	TCAGTATGTTCAACAGAAGA+TGG	-	chr1_3:35799726-35799745	None:intergenic	35.0%
!	AACTGGTGTTTTCTACAGAT+CGG	-	chr1_3:35799787-35799806	None:intergenic	35.0%
!	TTTTGTGCATTCTCATTTGC+CGG	-	chr1_3:35799990-35800009	None:intergenic	35.0%
	AACACACACACACACAACAA+TGG	+	chr1_3:35797079-35797098	Msa0116690:exon	40.0%
!!	TGAAGGTGTTGAGAAGACTA+AGG	+	chr1_3:35797586-35797605	Msa0116690:CDS	40.0%
!	GCATTTTACCTTTACCAGGA+CGG	-	chr1_3:35797682-35797701	None:intergenic	40.0%
	AAGGTAAAATGCGTAACCGT+AGG	+	chr1_3:35797690-35797709	Msa0116690:CDS	40.0%
	CCTTACGAGAGATATACCTA+CGG	-	chr1_3:35797709-35797728	None:intergenic	40.0%
	CGTAGGTATATCTCTCGTAA+GGG	+	chr1_3:35797707-35797726	Msa0116690:CDS	40.0%
!!!	AATCTTTTGAAGCTTGCACC+TGG	+	chr1_3:35797821-35797840	Msa0116690:CDS	40.0%
	TAAGACTGCTTTCGAGAAGT+TGG	+	chr1_3:35797874-35797893	Msa0116690:CDS	40.0%
!	TGGTTCTTTTGACAAGCCTT+CGG	+	chr1_3:35797907-35797926	Msa0116690:CDS	40.0%
	TGTGAAGAAGGATGTGAAGA+GGG	+	chr1_3:35798027-35798046	Msa0116690:CDS	40.0%
	CTCTTAGCAGTCTTAGCATA+AGG	-	chr1_3:35798106-35798125	None:intergenic	40.0%
	CTTATGCTAAGACTGCTAAG+AGG	+	chr1_3:35798104-35798123	Msa0116690:CDS	40.0%
!	TTTGCTTGCTGAAGCTGAAA+GGG	+	chr1_3:35798132-35798151	Msa0116690:CDS	40.0%
	TGAAAGGGTTAAGTCCAAGA+AGG	+	chr1_3:35798147-35798166	Msa0116690:CDS	40.0%
	ATAGGCTATGTTGCTCTGTA+AGG	+	chr1_3:35798454-35798473	Msa0116690:intron	40.0%
!!	TGGCATTGACATTATCCACT+TGG	+	chr1_3:35798609-35798628	Msa0116690:intron	40.0%
!!	GTCCTGCAATTTCAAGTTTC+AGG	+	chr1_3:35798748-35798767	Msa0116690:intron	40.0%
	GACCTGAAACTTGAAATTGC+AGG	-	chr1_3:35798753-35798772	None:intergenic	40.0%
!	ATCAAATGGATTTGGGTCAC+TGG	-	chr1_3:35798820-35798839	None:intergenic	40.0%
	GACAACTTCTCCAAATGGTT+GGG	+	chr1_3:35799441-35799460	Msa0116690:CDS	40.0%
!	TCTCACAATGAAGTGTCTCA+TGG	+	chr1_3:35799466-35799485	Msa0116690:exon	40.0%
	CAAAATTTGAGTGGGGCTAA+AGG	-	chr1_3:35799698-35799717	None:intergenic	40.0%
	TGGCAACGCAAAATTTGAGT+GGG	-	chr1_3:35799706-35799725	None:intergenic	40.0%
	ATGGCAACGCAAAATTTGAG+TGG	-	chr1_3:35799707-35799726	None:intergenic	40.0%
	TCACTACTCTAATGTAGCTC+TGG	+	chr1_3:35799753-35799772	Msa0116690:three_prime_UTR	40.0%
	AGATGTTCATCACGATCAAC+TGG	-	chr1_3:35799804-35799823	None:intergenic	40.0%
	TGGGAATTCACCATTCTGAA+TGG	-	chr1_3:35799962-35799981	None:intergenic	40.0%
!!	CGTTTTTGGAGATGTTGGAG+TGG	-	chr1_3:35797235-35797254	None:intergenic	45.0%
	ACTCAGGAACAGTTTCGATC+CGG	-	chr1_3:35797541-35797560	None:intergenic	45.0%
	CCAACAACAAGAGGAAACTC+AGG	-	chr1_3:35797557-35797576	None:intergenic	45.0%
!	CCTGAGTTTCCTCTTGTTGT+TGG	+	chr1_3:35797554-35797573	Msa0116690:CDS	45.0%
	GCAGAATCACCAACAACAAG+AGG	-	chr1_3:35797566-35797585	None:intergenic	45.0%
!!	GTTGTTGGTGATTCTGCTGA+AGG	+	chr1_3:35797569-35797588	Msa0116690:CDS	45.0%
	CCGTAGGTATATCTCTCGTA+AGG	+	chr1_3:35797706-35797725	Msa0116690:CDS	45.0%
	TTTCACTGCTTTCGCTCCTT+CGG	-	chr1_3:35797753-35797772	None:intergenic	45.0%
!	ACATTGGTGATCTCAACACC+AGG	-	chr1_3:35797791-35797810	None:intergenic	45.0%
!!!	TTTTGAAGCTTGCACCTGGT+GGG	+	chr1_3:35797825-35797844	Msa0116690:CDS	45.0%
	AATCTTCCTAAATGCCCACC+AGG	-	chr1_3:35797842-35797861	None:intergenic	45.0%
	AAGCCTTCGGAGAAGAAGAA+GGG	+	chr1_3:35797920-35797939	Msa0116690:CDS	45.0%
	TAACCCTTCTTCTTCTCCGA+AGG	-	chr1_3:35797926-35797945	None:intergenic	45.0%
	AGAAGGGTTATGTGCTTCCT+AGG	+	chr1_3:35797936-35797955	Msa0116690:CDS	45.0%
	GAAGGGTTATGTGCTTCCTA+GGG	+	chr1_3:35797937-35797956	Msa0116690:CDS	45.0%
	GAATTCACCATCTTAGCCCT+AGG	-	chr1_3:35797956-35797975	None:intergenic	45.0%
	TGTTGTTAGGCCTGTGAAGA+AGG	+	chr1_3:35798015-35798034	Msa0116690:CDS	45.0%
	CTCTTCACATCCTTCTTCAC+AGG	-	chr1_3:35798028-35798047	None:intergenic	45.0%
	CTGTGAAGAAGGATGTGAAG+AGG	+	chr1_3:35798026-35798045	Msa0116690:CDS	45.0%
	TGCTAAGACTGCTAAGAGGA+TGG	+	chr1_3:35798108-35798127	Msa0116690:CDS	45.0%
!	CTTTGCTTGCTGAAGCTGAA+AGG	+	chr1_3:35798131-35798150	Msa0116690:CDS	45.0%
	GAAGAGGAAGACTGTCTCTA+AGG	+	chr1_3:35798183-35798202	Msa0116690:CDS	45.0%
	GCAAAAACATGCATCAAGGG+AGG	-	chr1_3:35799254-35799273	None:intergenic	45.0%
	AATTACCCCTGTTCATTCCC+AGG	+	chr1_3:35799341-35799360	Msa0116690:intron	45.0%
	TTCTTCCTGGGAATGAACAG+GGG	-	chr1_3:35799349-35799368	None:intergenic	45.0%
	CTTCTTCCTGGGAATGAACA+GGG	-	chr1_3:35799350-35799369	None:intergenic	45.0%
	GATAGCAGTAGCTTCTTCCT+GGG	-	chr1_3:35799361-35799380	None:intergenic	45.0%
	TGATAGCAGTAGCTTCTTCC+TGG	-	chr1_3:35799362-35799381	None:intergenic	45.0%
	GGAAGAAGCTACTGCTATCA+AGG	+	chr1_3:35799362-35799381	Msa0116690:intron	45.0%
	CGACAACTTCTCCAAATGGT+TGG	+	chr1_3:35799440-35799459	Msa0116690:CDS	45.0%
	TTGTGAGACACCCAACCATT+TGG	-	chr1_3:35799454-35799473	None:intergenic	45.0%
	GGCAACGCAAAATTTGAGTG+GGG	-	chr1_3:35799705-35799724	None:intergenic	45.0%
!	ACAGAGATCTAGCTCATCTG+TGG	+	chr1_3:35799884-35799903	Msa0116690:three_prime_UTR	45.0%
!	CAGAGATCTAGCTCATCTGT+GGG	+	chr1_3:35799885-35799904	Msa0116690:three_prime_UTR	45.0%
	ATGGTGAATTCCCAGAACAC+CGG	+	chr1_3:35799968-35799987	Msa0116690:three_prime_UTR	45.0%
	TTCTCATTTGCCGGTGTTCT+GGG	-	chr1_3:35799981-35800000	None:intergenic	45.0%
	ATTCTCATTTGCCGGTGTTC+TGG	-	chr1_3:35799982-35800001	None:intergenic	45.0%
!!!	GGTGGAATTAGGGTTTTGGG+TGG	-	chr1_3:35797042-35797061	None:intergenic	50.0%
	AGTGGCCATGTCACCTTCAA+CGG	-	chr1_3:35797141-35797160	None:intergenic	50.0%
	CATGACATCAGGGATTGGGA+GGG	-	chr1_3:35797177-35797196	None:intergenic	50.0%
	CACGCATGACATCAGGGATT+GGG	-	chr1_3:35797181-35797200	None:intergenic	50.0%
	TGGACGAAGTTGACGATGTC+GGG	-	chr1_3:35797215-35797234	None:intergenic	50.0%
	GTGGACGAAGTTGACGATGT+CGG	-	chr1_3:35797216-35797235	None:intergenic	50.0%
!!	ACGGGCGTTTTTGGAGATGT+TGG	-	chr1_3:35797240-35797259	None:intergenic	50.0%
!!	GTATGGTTGACGGGCGTTTT+TGG	-	chr1_3:35797249-35797268	None:intergenic	50.0%
	GTTACCGAAAGCAGCTTGTC+CGG	-	chr1_3:35797375-35797394	None:intergenic	50.0%
	AAGGCTATCCTTCGCCTTCT+CGG	-	chr1_3:35797654-35797673	None:intergenic	50.0%
	AGAAGGCGAAGGATAGCCTT+GGG	+	chr1_3:35797654-35797673	Msa0116690:CDS	50.0%
!!!	CTTTTGAAGCTTGCACCTGG+TGG	+	chr1_3:35797824-35797843	Msa0116690:CDS	50.0%
	CAAGCCTTCGGAGAAGAAGA+AGG	+	chr1_3:35797919-35797938	Msa0116690:CDS	50.0%
	TGTGCTTCCTAGGGCTAAGA+TGG	+	chr1_3:35797946-35797965	Msa0116690:CDS	50.0%
	GCTTCTTCCTGGGAATGAAC+AGG	-	chr1_3:35799351-35799370	None:intergenic	50.0%
	TCAAGGCTGCAGGAAAAGCA+TGG	+	chr1_3:35799379-35799398	Msa0116690:CDS	50.0%
	TTTGAGTGGGGCTAAAGGTG+TGG	-	chr1_3:35799693-35799712	None:intergenic	50.0%
	GTCACTGTCCACACCGTTGA+AGG	+	chr1_3:35797125-35797144	Msa0116690:CDS	55.0%
	CCATGTCACCTTCAACGGTG+TGG	-	chr1_3:35797136-35797155	None:intergenic	55.0%
	CCACACCGTTGAAGGTGACA+TGG	+	chr1_3:35797133-35797152	Msa0116690:CDS	55.0%
	GCATGACATCAGGGATTGGG+AGG	-	chr1_3:35797178-35797197	None:intergenic	55.0%
	GCACGCATGACATCAGGGAT+TGG	-	chr1_3:35797182-35797201	None:intergenic	55.0%
	TGGCTGCACGCATGACATCA+GGG	-	chr1_3:35797187-35797206	None:intergenic	55.0%
	ATGGCTGCACGCATGACATC+AGG	-	chr1_3:35797188-35797207	None:intergenic	55.0%
	CGAAGTTGACGATGTCGGGA+CGG	-	chr1_3:35797211-35797230	None:intergenic	55.0%
!!	AGGTTTGGTGACCGGCTTTG+CGG	-	chr1_3:35797280-35797299	None:intergenic	55.0%
	GCTTTCGGTAACATGTGCCG+TGG	+	chr1_3:35797383-35797402	Msa0116690:CDS	55.0%
	TTCGGTAACATGTGCCGTGG+TGG	+	chr1_3:35797386-35797405	Msa0116690:CDS	55.0%
	GAGCAAACATGCGACCACCA+CGG	-	chr1_3:35797403-35797422	None:intergenic	55.0%
	GTCGCATGTTTGCTCCTACC+CGG	+	chr1_3:35797408-35797427	Msa0116690:CDS	55.0%
	TGTTTGCTCCTACCCGGATC+TGG	+	chr1_3:35797414-35797433	Msa0116690:CDS	55.0%
	CATTTACGCCAGATCCGGGT+AGG	-	chr1_3:35797425-35797444	None:intergenic	55.0%
	CTACCCGGATCTGGCGTAAA+TGG	+	chr1_3:35797423-35797442	Msa0116690:CDS	55.0%
!!	GTGCCATTTACGCCAGATCC+GGG	-	chr1_3:35797429-35797448	None:intergenic	55.0%
!!	GGTGCCATTTACGCCAGATC+CGG	-	chr1_3:35797430-35797449	None:intergenic	55.0%
	CCACGAGCGAGAACAAGTGA+AGG	-	chr1_3:35797515-35797534	None:intergenic	55.0%
	CCTTCACTTGTTCTCGCTCG+TGG	+	chr1_3:35797512-35797531	Msa0116690:CDS	55.0%
	TTGTTCTCGCTCGTGGTCAC+CGG	+	chr1_3:35797519-35797538	Msa0116690:CDS	55.0%
	AGCTTACCCTGATGCCGAGA+AGG	+	chr1_3:35797637-35797656	Msa0116690:CDS	55.0%
	GAGAAGGCGAAGGATAGCCT+TGG	+	chr1_3:35797653-35797672	Msa0116690:CDS	55.0%
	CTTTACCAGGACGGATCCCA+AGG	-	chr1_3:35797673-35797692	None:intergenic	55.0%
	CTTGGGATCCGTCCTGGTAA+AGG	+	chr1_3:35797671-35797690	Msa0116690:CDS	55.0%
!	CTTGCACCTGGTGGGCATTT+AGG	+	chr1_3:35797833-35797852	Msa0116690:CDS	55.0%
	AAGGGAGGAAGCAGCACACA+TGG	-	chr1_3:35799239-35799258	None:intergenic	55.0%
	GCTACTGCTATCAAGGCTGC+AGG	+	chr1_3:35799369-35799388	Msa0116690:CDS	55.0%
	AGTGACGAGAGGACGAGCTG+CGG	-	chr1_3:35797111-35797130	None:intergenic	60.0%
	ACGGTGTGGACAGTGACGAG+AGG	-	chr1_3:35797122-35797141	None:intergenic	60.0%
	TCAGGGATTGGGAGGGAGGT+GGG	-	chr1_3:35797170-35797189	None:intergenic	60.0%
	ATCAGGGATTGGGAGGGAGG+TGG	-	chr1_3:35797171-35797190	None:intergenic	60.0%
	GACATCAGGGATTGGGAGGG+AGG	-	chr1_3:35797174-35797193	None:intergenic	60.0%
	GTTGACGATGTCGGGACGGA+TGG	-	chr1_3:35797207-35797226	None:intergenic	60.0%
	GCTGACGGCGTATGGTTGAC+GGG	-	chr1_3:35797258-35797277	None:intergenic	60.0%
	GGCTGACGGCGTATGGTTGA+CGG	-	chr1_3:35797259-35797278	None:intergenic	60.0%
	GATACGGGAGACAGCACGTC+CGG	-	chr1_3:35797321-35797340	None:intergenic	60.0%
	TCCCGTATCCCTCGTGTTGC+CGG	+	chr1_3:35797332-35797351	Msa0116690:CDS	60.0%
	TCCGGCAACACGAGGGATAC+GGG	-	chr1_3:35797336-35797355	None:intergenic	60.0%
	CTCCGGCAACACGAGGGATA+CGG	-	chr1_3:35797337-35797356	None:intergenic	60.0%
	TACCACCTCCGGCAACACGA+GGG	-	chr1_3:35797343-35797362	None:intergenic	60.0%
	CGAAAGCAGCTTGTCCGGCA+CGG	-	chr1_3:35797370-35797389	None:intergenic	60.0%
!	CGTGCCGGACAAGCTGCTTT+CGG	+	chr1_3:35797368-35797387	Msa0116690:CDS	60.0%
	CCTTCGCCTTCTCGGCATCA+GGG	-	chr1_3:35797646-35797665	None:intergenic	60.0%
	TCCTTCGCCTTCTCGGCATC+AGG	-	chr1_3:35797647-35797666	None:intergenic	60.0%
!	GATAGCCTTGGGATCCGTCC+TGG	+	chr1_3:35797665-35797684	Msa0116690:CDS	60.0%
!!	GAGGGAGGTGGGAGTGTCAG+TGG	-	chr1_3:35797159-35797178	None:intergenic	65.0%
	GCTTTGCGGCTGACGGCGTA+TGG	-	chr1_3:35797266-35797285	None:intergenic	65.0%
	TACGCCGTCAGCCGCAAAGC+CGG	+	chr1_3:35797266-35797285	Msa0116690:CDS	65.0%
!	GTGACCGGCTTTGCGGCTGA+CGG	-	chr1_3:35797273-35797292	None:intergenic	65.0%
!!	CTCGGCGGAGGTTTGGTGAC+CGG	-	chr1_3:35797288-35797307	None:intergenic	65.0%
	ACCAAACCTCCGCCGAGTCC+TGG	+	chr1_3:35797291-35797310	Msa0116690:CDS	65.0%
	CCAAACCTCCGCCGAGTCCT+GGG	+	chr1_3:35797292-35797311	Msa0116690:CDS	65.0%
	CAAACCTCCGCCGAGTCCTG+GGG	+	chr1_3:35797293-35797312	Msa0116690:CDS	65.0%
	ACGTCCGGTACCCCAGGACT+CGG	-	chr1_3:35797306-35797325	None:intergenic	65.0%
	CGTATCCCTCGTGTTGCCGG+AGG	+	chr1_3:35797335-35797354	Msa0116690:CDS	65.0%
	ATCCCTCGTGTTGCCGGAGG+TGG	+	chr1_3:35797338-35797357	Msa0116690:CDS	65.0%
	GTACCACCTCCGGCAACACG+AGG	-	chr1_3:35797344-35797363	None:intergenic	65.0%
	AGCAGCTTGTCCGGCACGGT+GGG	-	chr1_3:35797366-35797385	None:intergenic	65.0%
	AAGCAGCTTGTCCGGCACGG+TGG	-	chr1_3:35797367-35797386	None:intergenic	65.0%
	CCCTGATGCCGAGAAGGCGA+AGG	+	chr1_3:35797643-35797662	Msa0116690:CDS	65.0%
	GACGAGAGGACGAGCTGCGG+CGG	-	chr1_3:35797108-35797127	None:intergenic	70.0%
	CCCAGGACTCGGCGGAGGTT+TGG	-	chr1_3:35797295-35797314	None:intergenic	70.0%
	TCCGCCGAGTCCTGGGGTAC+CGG	+	chr1_3:35797299-35797318	Msa0116690:CDS	70.0%
	TCCGGTACCCCAGGACTCGG+CGG	-	chr1_3:35797303-35797322	None:intergenic	70.0%
	GACAGCACGTCCGGTACCCC+AGG	-	chr1_3:35797312-35797331	None:intergenic	70.0%
	GGCACGGTGGGTACCACCTC+CGG	-	chr1_3:35797354-35797373	None:intergenic	70.0%
	GGAGGTGGTACCCACCGTGC+CGG	+	chr1_3:35797353-35797372	Msa0116690:CDS	70.0%
	GAGAGGACGAGCTGCGGCGG+CGG	-	chr1_3:35797105-35797124	None:intergenic	75.0%
	GGTACCCCAGGACTCGGCGG+AGG	-	chr1_3:35797300-35797319	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	35797039	35800060	35797039	ID=Msa0116690;Name=Msa0116690
chr1_3	mRNA	35797039	35800060	35797039	ID=Msa0116690-mRNA-1;Parent=Msa0116690;Name=Msa0116690-mRNA-1;_AED=0.00;_eAED=0.00;_QI=59\|1\|1\|1\|1\|1\|2\|584\|406
chr1_3	exon	35797039	35798204	35797039	ID=Msa0116690-mRNA-1:exon:11566;Parent=Msa0116690-mRNA-1
chr1_3	exon	35799363	35800060	35799363	ID=Msa0116690-mRNA-1:exon:11567;Parent=Msa0116690-mRNA-1
chr1_3	five_prime_UTR	35797039	35797097	35797039	ID=Msa0116690-mRNA-1:five_prime_utr;Parent=Msa0116690-mRNA-1
chr1_3	CDS	35797098	35798204	35797098	ID=Msa0116690-mRNA-1:cds;Parent=Msa0116690-mRNA-1
chr1_3	CDS	35799363	35799476	35799363	ID=Msa0116690-mRNA-1:cds;Parent=Msa0116690-mRNA-1
chr1_3	three_prime_UTR	35799477	35800060	35799477	ID=Msa0116690-mRNA-1:three_prime_utr;Parent=Msa0116690-mRNA-1

Gene Sequence

>Msa0116690

ATGGCCGCCGCCGCAGCTCGTCCTCTCGTCACTGTCCACACCGTTGAAGGTGACATGGCCACTGACACTCCCACCTCCCTCCCAATCCCTGATGTCATGCGTGCAGCCATCCGTCCCGACATCGTCAACTTCGTCCACTCCAACATCTCCAAAAACGCCCGTCAACCATACGCCGTCAGCCGCAAAGCCGGTCACCAAACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTCTCCCGTATCCCTCGTGTTGCCGGAGGTGGTACCCACCGTGCCGGACAAGCTGCTTTCGGTAACATGTGCCGTGGTGGTCGCATGTTTGCTCCTACCCGGATCTGGCGTAAATGGCACCGTAAAATCAATGTGAATCAGAAGCGTTACGCTGTTGTTTCAGCTATAGCTGCTTCTGCTATTCCTTCACTTGTTCTCGCTCGTGGTCACCGGATCGAAACTGTTCCTGAGTTTCCTCTTGTTGTTGGTGATTCTGCTGAAGGTGTTGAGAAGACTAAGGAAGCGATCAAGCTTTTGAAATCAATTGGAGCTTACCCTGATGCCGAGAAGGCGAAGGATAGCCTTGGGATCCGTCCTGGTAAAGGTAAAATGCGTAACCGTAGGTATATCTCTCGTAAGGGTCCTTTGATTGTTTATGGTACCGAAGGAGCGAAAGCAGTGAAAGCTTTTCGCAATATTCCTGGTGTTGAGATCACCAATGTTGAAAGGTTGAATCTTTTGAAGCTTGCACCTGGTGGGCATTTAGGAAGATTTGTGATTTGGACTAAGACTGCTTTCGAGAAGTTGGATTCCATTTATGGTTCTTTTGACAAGCCTTCGGAGAAGAAGAAGGGTTATGTGCTTCCTAGGGCTAAGATGGTGAATTCTGATTTGACTAGGATTATTAACTCTGATGAGATTCAGAGTGTTGTTAGGCCTGTGAAGAAGGATGTGAAGAGGGCCACTTTGAAGAAGAATCCTTTGAAGAATCTCAATGTTATGTTGAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAAGCTGAAAGGGTTAAGTCCAAGAAGGAAAAGCTTGATAAGAAGAGGAAGACTGTCTCTAAGGAAGAAGCTACTGCTATCAAGGCTGCAGGAAAAGCATGGTACAATACTATGGTGTCAGATTCTGATTACACAGAATTCGACAACTTCTCCAAATGGTTGGGTGTCTCACAATGA

Protein sequence

>Msa0116690

MAAAAARPLVTVHTVEGDMATDTPTSLPIPDVMRAAIRPDIVNFVHSNISKNARQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKINVNQKRYAVVSAIAASAIPSLVLARGHRIETVPEFPLVVGDSAEGVEKTKEAIKLLKSIGAYPDAEKAKDSLGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKPSEKKKGYVLPRAKMVNSDLTRIINSDEIQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKSKKEKLDKKRKTVSKEEATAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ*