Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116600 | XP_013468257.1 | 99.257 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116600 | sp|Q9SF40|RL4A_ARATH | 82.266 | 406 | 72 | 0 | 1 | 406 | 1 | 406 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116600 | A0A072VJR8 | 99.257 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026270 | Msa0116600 | 0.856542 | 2.999558e-62 | -8.615850e-47 |
| Msa0042510 | Msa0116600 | 0.834664 | 2.630564e-56 | -8.615850e-47 |
| Msa0065330 | Msa0116600 | 0.820570 | 6.396143e-53 | -8.615850e-47 |
| Msa0074170 | Msa0116600 | 0.830762 | 2.446886e-55 | -8.615850e-47 |
| Msa0079560 | Msa0116600 | 0.825938 | 3.567495e-54 | -8.615850e-47 |
| Msa0116600 | Msa0116690 | 0.995243 | 2.315432e-214 | -8.615850e-47 |
| Msa0116600 | Msa0127230 | 0.819747 | 9.875690e-53 | -8.615850e-47 |
| Msa0116600 | Msa0132460 | 0.848193 | 7.165341e-60 | -8.615850e-47 |
| Msa0116600 | Msa0156930 | 0.819958 | 8.834849e-53 | -8.615850e-47 |
| Msa0116600 | Msa0182050 | 0.852429 | 4.642347e-61 | -8.615850e-47 |
| Msa0116600 | Msa0182100 | 0.829851 | 4.084089e-55 | -8.615850e-47 |
| Msa0116600 | Msa0188740 | 0.856057 | 4.161598e-62 | -8.615850e-47 |
| Msa0116600 | Msa0192300 | 0.868654 | 5.561419e-66 | -8.615850e-47 |
| Msa0116600 | Msa0270160 | 0.857338 | 1.747774e-62 | -8.615850e-47 |
| Msa0116600 | Msa0301250 | 0.858312 | 8.979717e-63 | -8.615850e-47 |
| Msa0116600 | Msa0313060 | 0.862765 | 4.020448e-64 | -8.615850e-47 |
| Msa0116600 | Msa0371490 | 0.815395 | 9.449948e-52 | -8.615850e-47 |
| Msa0116600 | Msa0377520 | 0.804070 | 2.576902e-49 | -8.615850e-47 |
| Msa0116600 | Msa0387290 | 0.835233 | 1.890703e-56 | -8.615850e-47 |
| Msa0116600 | Msa0426090 | 0.830572 | 2.723886e-55 | -8.615850e-47 |
| Msa0116600 | Msa0426250 | 0.813172 | 2.927892e-51 | -8.615850e-47 |
| Msa0116600 | Msa0426940 | 0.818536 | 1.862220e-52 | -8.615850e-47 |
| Msa0116600 | Msa0472480 | 0.832942 | 7.087873e-56 | -8.615850e-47 |
| Msa0116600 | Msa0482560 | 0.839182 | 1.845928e-57 | -8.615850e-47 |
| Msa0116600 | Msa0485220 | 0.834428 | 3.014581e-56 | -8.615850e-47 |
| Msa0116600 | Msa0511760 | 0.821614 | 3.676159e-53 | -8.615850e-47 |
| Msa0116600 | Msa0547920 | 0.812488 | 4.133618e-51 | -8.615850e-47 |
| Msa0116600 | Msa0563540 | 0.813669 | 2.277081e-51 | -8.615850e-47 |
| Msa0116600 | Msa0573550 | 0.839764 | 1.303317e-57 | -8.615850e-47 |
| Msa0116600 | Msa0578010 | 0.845490 | 3.931970e-59 | -8.615850e-47 |
| Msa0116600 | Msa0589160 | 0.824538 | 7.644030e-54 | -8.615850e-47 |
| Msa0116600 | Msa0597240 | 0.839543 | 1.488359e-57 | -8.615850e-47 |
| Msa0116600 | Msa0602900 | 0.827405 | 1.592966e-54 | -8.615850e-47 |
| Msa0116600 | Msa0619230 | 0.837088 | 6.388433e-57 | -8.615850e-47 |
| Msa0116600 | Msa0621190 | 0.849929 | 2.357631e-60 | -8.615850e-47 |
| Msa0116600 | Msa0629280 | 0.801651 | 8.144278e-49 | -8.615850e-47 |
| Msa0116600 | Msa0643960 | 0.820652 | 6.125137e-53 | -8.615850e-47 |
| Msa0116600 | Msa0656450 | 0.841053 | 6.000215e-58 | -8.615850e-47 |
| Msa0116600 | Msa0667110 | 0.810845 | 9.412222e-51 | -8.615850e-47 |
| Msa0116600 | Msa0694400 | 0.835905 | 1.277823e-56 | -8.615850e-47 |
| Msa0116600 | Msa0708630 | 0.850184 | 2.000999e-60 | -8.615850e-47 |
| Msa0116600 | Msa0709380 | 0.803153 | 3.993754e-49 | -8.615850e-47 |
| Msa0116600 | Msa0790450 | 0.849092 | 4.036808e-60 | -8.615850e-47 |
| Msa0116600 | Msa0880050 | 0.810279 | 1.247299e-50 | -8.615850e-47 |
| Msa0116600 | Msa0929700 | 0.818507 | 1.890595e-52 | -8.615850e-47 |
| Msa0116600 | Msa0930100 | 0.861702 | 8.523594e-64 | -8.615850e-47 |
| Msa0116600 | Msa0930360 | 0.922390 | 1.046885e-88 | -8.615850e-47 |
| Msa0116600 | Msa0930790 | 0.877245 | 7.337820e-69 | -8.615850e-47 |
| Msa0116600 | Msa1041830 | 0.812573 | 3.961713e-51 | -8.615850e-47 |
| Msa0116600 | Msa1085850 | 0.800477 | 1.415191e-48 | -8.615850e-47 |
| Msa0116600 | Msa1116940 | 0.804626 | 1.973939e-49 | -8.615850e-47 |
| Msa0116600 | Msa1124980 | 0.816597 | 5.095668e-52 | -8.615850e-47 |
| Msa0116600 | Msa1126690 | 0.822860 | 1.889664e-53 | -8.615850e-47 |
| Msa0116600 | Msa1136880 | 0.802659 | 5.050178e-49 | -8.615850e-47 |
| Msa0116600 | Msa1144630 | 0.850034 | 2.204066e-60 | -8.615850e-47 |
| Msa0116600 | Msa1167360 | 0.818323 | 2.080947e-52 | -8.615850e-47 |
| Msa0116600 | Msa1213850 | 0.828645 | 8.014282e-55 | -8.615850e-47 |
| Msa0116600 | Msa1218610 | 0.811642 | 6.321784e-51 | -8.615850e-47 |
| Msa0116600 | Msa1235980 | 0.801133 | 1.039596e-48 | -8.615850e-47 |
| Msa0116600 | Msa1237040 | 0.870597 | 1.293611e-66 | -8.615850e-47 |
| Msa0116600 | Msa1278130 | 0.821002 | 5.088515e-53 | -8.615850e-47 |
| Msa0116600 | Msa1284060 | 0.802696 | 4.963299e-49 | -8.615850e-47 |
| Msa0116600 | Msa1317390 | 0.878413 | 2.864996e-69 | -8.615850e-47 |
| Msa0116600 | Msa1351020 | 0.804862 | 1.761754e-49 | -8.615850e-47 |
| Msa0116600 | Msa1351910 | 0.820959 | 5.205337e-53 | -8.615850e-47 |
| Msa0116600 | Msa1363930 | 0.850365 | 1.779873e-60 | -8.615850e-47 |
| Msa0116600 | Msa1385480 | 0.820134 | 8.050886e-53 | -8.615850e-47 |
| Msa0116600 | Msa1387750 | 0.849989 | 2.269418e-60 | -8.615850e-47 |
| Msa0116600 | Msa1390760 | 0.836772 | 7.693243e-57 | -8.615850e-47 |
| Msa0116600 | Msa1403520 | 0.839119 | 1.916630e-57 | -8.615850e-47 |
| Msa0116600 | Msa1407550 | 0.803039 | 4.217047e-49 | -8.615850e-47 |
| Msa0116600 | Msa1413570 | 0.844601 | 6.835295e-59 | -8.615850e-47 |
| Msa0116600 | Msa1423050 | 0.808306 | 3.305111e-50 | -8.615850e-47 |
| Msa0116600 | Msa1432310 | 0.801086 | 1.062659e-48 | -8.615850e-47 |
| Msa0116600 | Msa1450560 | 0.852310 | 5.021229e-61 | -8.615850e-47 |
| Msa0116600 | Msa1453530 | 0.829995 | 3.767931e-55 | -8.615850e-47 |
| Msa0116600 | Msa1463510 | 0.850839 | 1.310012e-60 | -8.615850e-47 |
| Msa0116600 | Msa1465890 | 0.856747 | 2.610323e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116600 | MtrunA17_Chr1g0181761 | 99.257 | 404 | 3 | 0 | 3 | 406 | 2 | 405 | 0.0 | 820 |
| Msa0116600 | MtrunA17_Chr1g0168531 | 93.842 | 406 | 25 | 0 | 1 | 406 | 46 | 451 | 0.0 | 740 |
| Msa0116600 | MtrunA17_Chr5g0407811 | 93.250 | 400 | 27 | 0 | 7 | 406 | 9 | 408 | 0.0 | 731 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0116600 | AT3G09630.1 | 82.266 | 406 | 72 | 0 | 1 | 406 | 1 | 406 | 0.0 | 693 |
| Msa0116600 | AT3G09630.2 | 82.020 | 406 | 72 | 1 | 1 | 406 | 1 | 405 | 0.0 | 687 |
| Msa0116600 | AT5G02870.1 | 81.034 | 406 | 77 | 0 | 1 | 406 | 2 | 407 | 0.0 | 681 |
| Msa0116600 | AT5G02870.2 | 80.788 | 406 | 77 | 1 | 1 | 406 | 2 | 406 | 0.0 | 674 |
Find 159 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGTTGGATTCCATTTA+TGG | 0.101086 | 1_3:+35667702 | Msa0116600:CDS |
| GAAAATGAAATGGTGGAATT+AGG | 0.182758 | 1_3:-35666865 | None:intergenic |
| AAGGGTCCTTTGATTGTTTA+TGG | 0.212085 | 1_3:+35667540 | Msa0116600:CDS |
| CTTGCACCTGGTGGGCATTT+AGG | 0.222485 | 1_3:+35667648 | Msa0116600:CDS |
| AAATGGTGGAATTAGGGTTT+TGG | 0.248171 | 1_3:-35666858 | None:intergenic |
| ATTCTCATTTGCCGGTGTTC+TGG | 0.251159 | 1_3:-35669794 | None:intergenic |
| ACCAAACCTCCGCCGAGTCC+TGG | 0.279177 | 1_3:+35667106 | Msa0116600:CDS |
| CTACCCGGATCTGGCGTAAA+TGG | 0.282086 | 1_3:+35667238 | Msa0116600:CDS |
| CCTGAGTTTCCTCTTGTTGT+TGG | 0.285780 | 1_3:+35667369 | Msa0116600:CDS |
| TCCAATATTTCGACTTCATA+TGG | 0.294449 | 1_3:+35669455 | Msa0116600:three_prime_UTR |
| AAAATGAAATGGTGGAATTA+GGG | 0.309101 | 1_3:-35666864 | None:intergenic |
| TTCTCATTTGCCGGTGTTCT+GGG | 0.309644 | 1_3:-35669793 | None:intergenic |
| TCCCGTATCCCTCGTGTTGC+CGG | 0.310391 | 1_3:+35667147 | Msa0116600:CDS |
| TCCATATGAAGTCGAAATAT+TGG | 0.314726 | 1_3:-35669456 | None:intergenic |
| ATTCAAATTTGTGTTATAAT+CGG | 0.325569 | 1_3:+35669854 | Msa0116600:three_prime_UTR |
| CTAATTGAATGTTGTTCTCT+AGG | 0.334090 | 1_3:+35669323 | Msa0116600:three_prime_UTR |
| ATTTAGGAAGATTTGTGATT+TGG | 0.337375 | 1_3:+35667664 | Msa0116600:CDS |
| CTTGTCAAAAGAACCATAAA+TGG | 0.363253 | 1_3:-35667715 | None:intergenic |
| TCCTTCGCCTTCTCGGCATC+AGG | 0.364051 | 1_3:-35667459 | None:intergenic |
| CCCAGGACTCGGCGGAGGTT+TGG | 0.365068 | 1_3:-35667107 | None:intergenic |
| CTCTTAGCAGTCTTAGCATA+AGG | 0.391556 | 1_3:-35667918 | None:intergenic |
| TTTGAGATTATGATATTGTA+AGG | 0.394038 | 1_3:+35669368 | Msa0116600:three_prime_UTR |
| AGAAGGGTTATGTGCTTCCT+AGG | 0.398377 | 1_3:+35667751 | Msa0116600:CDS |
| GAAGAGGAAGACTGTCTCTA+AGG | 0.403102 | 1_3:+35667998 | Msa0116600:CDS |
| ATCAGGGATTGGGAGGGAGG+TGG | 0.411958 | 1_3:-35666983 | None:intergenic |
| ATGAGATTCAGAGTGTTGTT+AGG | 0.418477 | 1_3:+35667817 | Msa0116600:CDS |
| TGTTTGCTCCTACCCGGATC+TGG | 0.420217 | 1_3:+35667229 | Msa0116600:CDS |
| GGCACGGTGGGTACCACCTC+CGG | 0.421789 | 1_3:-35667166 | None:intergenic |
| ATGGCTGCACGCATGACATC+AGG | 0.422229 | 1_3:-35667000 | None:intergenic |
| CTCTTCACATCCTTCTTCAC+AGG | 0.423968 | 1_3:-35667840 | None:intergenic |
| AAGGCTATCCTTCGCCTTCT+CGG | 0.425608 | 1_3:-35667466 | None:intergenic |
| CCAAACCTCCGCCGAGTCCT+GGG | 0.426021 | 1_3:+35667107 | Msa0116600:CDS |
| TTTCACTGCTTTCGCTCCTT+CGG | 0.428218 | 1_3:-35667565 | None:intergenic |
| TTGTGAGACACCCAACCATT+TGG | 0.429854 | 1_3:-35669266 | None:intergenic |
| ATCCCTCGTGTTGCCGGAGG+TGG | 0.430060 | 1_3:+35667153 | Msa0116600:CDS |
| TAAGACTGCTTTCGAGAAGT+TGG | 0.434224 | 1_3:+35667689 | Msa0116600:CDS |
| GTTGTTGGTGATTCTGCTGA+AGG | 0.435579 | 1_3:+35667384 | Msa0116600:CDS |
| GGCTGACGGCGTATGGTTGA+CGG | 0.438192 | 1_3:-35667071 | None:intergenic |
| AAAAGCATGGTACAATACTA+TGG | 0.446415 | 1_3:+35669207 | Msa0116600:CDS |
| GAGAGGACGAGCTGCGGCGG+CGG | 0.447733 | 1_3:-35666917 | None:intergenic |
| CGTGCCGGACAAGCTGCTTT+CGG | 0.452166 | 1_3:+35667183 | Msa0116600:CDS |
| CTCCGGCAACACGAGGGATA+CGG | 0.453243 | 1_3:-35667149 | None:intergenic |
| CTCGGCGGAGGTTTGGTGAC+CGG | 0.453892 | 1_3:-35667100 | None:intergenic |
| GACAACTTCTCCAAATGGTT+GGG | 0.457303 | 1_3:+35669256 | Msa0116600:CDS |
| TGGACGAAGTTGACGATGTC+GGG | 0.461251 | 1_3:-35667027 | None:intergenic |
| CACGCATGACATCAGGGATT+GGG | 0.461277 | 1_3:-35666993 | None:intergenic |
| TCACTACTCTAATGTAGCTC+TGG | 0.464298 | 1_3:+35669568 | Msa0116600:three_prime_UTR |
| GTCACTGTCCACACCGTTGA+AGG | 0.464341 | 1_3:+35666940 | Msa0116600:CDS |
| CTTTGCTTGCTGAAGCTGAA+AGG | 0.471531 | 1_3:+35667946 | Msa0116600:CDS |
| TCCGGCAACACGAGGGATAC+GGG | 0.473737 | 1_3:-35667148 | None:intergenic |
| CGACAACTTCTCCAAATGGT+TGG | 0.475554 | 1_3:+35669255 | Msa0116600:CDS |
| CAAAATTTGAGTGGGGCTAA+AGG | 0.478747 | 1_3:-35669510 | None:intergenic |
| GCACGCATGACATCAGGGAT+TGG | 0.480128 | 1_3:-35666994 | None:intergenic |
| AGATGTTCATCACGATCAAC+TGG | 0.482386 | 1_3:-35669616 | None:intergenic |
| TTGTTCTCGCTCGTGGTCAC+CGG | 0.483198 | 1_3:+35667334 | Msa0116600:CDS |
| GAGGGAGGTGGGAGTGTCAG+TGG | 0.486549 | 1_3:-35666971 | None:intergenic |
| AATTCGACAACTTCTCCAAA+TGG | 0.487072 | 1_3:+35669251 | Msa0116600:CDS |
| GTTACCGAAAGCAGCTTGTC+CGG | 0.489007 | 1_3:-35667187 | None:intergenic |
| GCTGACGGCGTATGGTTGAC+GGG | 0.489659 | 1_3:-35667070 | None:intergenic |
| TTTGCTTGCTGAAGCTGAAA+GGG | 0.491694 | 1_3:+35667947 | Msa0116600:CDS |
| CTTGGGATCCGTCCTGGTAA+AGG | 0.491818 | 1_3:+35667486 | Msa0116600:CDS |
| GCTTTGCGGCTGACGGCGTA+TGG | 0.494149 | 1_3:-35667078 | None:intergenic |
| CCGTAGGTATATCTCTCGTA+AGG | 0.494610 | 1_3:+35667521 | Msa0116600:CDS |
| GGTGCCATTTACGCCAGATC+CGG | 0.497461 | 1_3:-35667242 | None:intergenic |
| AAGATTCAACCTTTCAACAT+TGG | 0.499445 | 1_3:-35667619 | None:intergenic |
| TGTGCTTCCTAGGGCTAAGA+TGG | 0.502217 | 1_3:+35667761 | Msa0116600:CDS |
| CAAGCCTTCGGAGAAGAAGA+AGG | 0.503462 | 1_3:+35667734 | Msa0116600:CDS |
| GGAAGAAGCTACTGCTATCA+AGG | 0.505228 | 1_3:+35669177 | Msa0116600:intron |
| TCCGCCGAGTCCTGGGGTAC+CGG | 0.506294 | 1_3:+35667114 | Msa0116600:CDS |
| TGGGAATTCACCATTCTGAA+TGG | 0.508333 | 1_3:-35669774 | None:intergenic |
| TTGTATGTAATGCTTCAAGA+AGG | 0.508678 | 1_3:+35669675 | Msa0116600:three_prime_UTR |
| TCAGGGATTGGGAGGGAGGT+GGG | 0.510339 | 1_3:-35666982 | None:intergenic |
| GTCGCATGTTTGCTCCTACC+CGG | 0.517664 | 1_3:+35667223 | Msa0116600:CDS |
| AGTGGCCATGTCACCTTCAA+CGG | 0.518640 | 1_3:-35666953 | None:intergenic |
| AGGAAAAGCTTGATAAGAAG+AGG | 0.518903 | 1_3:+35667982 | Msa0116600:CDS |
| AGGTTTGGTGACCGGCTTTG+CGG | 0.519498 | 1_3:-35667092 | None:intergenic |
| GACAGCACGTCCGGTACCCC+AGG | 0.521322 | 1_3:-35667124 | None:intergenic |
| TAACCCTTCTTCTTCTCCGA+AGG | 0.522957 | 1_3:-35667738 | None:intergenic |
| TACGCCGTCAGCCGCAAAGC+CGG | 0.523016 | 1_3:+35667081 | Msa0116600:CDS |
| GACATCAGGGATTGGGAGGG+AGG | 0.523295 | 1_3:-35666986 | None:intergenic |
| GATAGCCTTGGGATCCGTCC+TGG | 0.524843 | 1_3:+35667480 | Msa0116600:CDS |
| CAAAGGATTCTTCTTCAAAG+TGG | 0.526268 | 1_3:-35667865 | None:intergenic |
| AGAAGGCGAAGGATAGCCTT+GGG | 0.528805 | 1_3:+35667469 | Msa0116600:CDS |
| GTTGACGATGTCGGGACGGA+TGG | 0.533971 | 1_3:-35667019 | None:intergenic |
| CCTTCACTTGTTCTCGCTCG+TGG | 0.537661 | 1_3:+35667327 | Msa0116600:CDS |
| TGGTGAATTCTGATTTGACT+AGG | 0.539110 | 1_3:+35667781 | Msa0116600:CDS |
| AGCAGCTTGTCCGGCACGGT+GGG | 0.541824 | 1_3:-35667178 | None:intergenic |
| TGTTGTTAGGCCTGTGAAGA+AGG | 0.543579 | 1_3:+35667830 | Msa0116600:CDS |
| GTGACCGGCTTTGCGGCTGA+CGG | 0.544837 | 1_3:-35667085 | None:intergenic |
| GATACGGGAGACAGCACGTC+CGG | 0.546656 | 1_3:-35667133 | None:intergenic |
| GAGAAGGCGAAGGATAGCCT+TGG | 0.548067 | 1_3:+35667468 | Msa0116600:CDS |
| TCAGTGTGTTCAACAGAAGA+TGG | 0.551575 | 1_3:-35669538 | None:intergenic |
| TTGATTGTTTATGGTACCGA+AGG | 0.552842 | 1_3:+35667549 | Msa0116600:CDS |
| CCTTCGCCTTCTCGGCATCA+GGG | 0.553120 | 1_3:-35667458 | None:intergenic |
| TGGCAACGCAAAATTTGAGT+GGG | 0.560260 | 1_3:-35669518 | None:intergenic |
| GAATTCACCATCTTAGCCCT+AGG | 0.564088 | 1_3:-35667768 | None:intergenic |
| AAATGAGAATGCACAAAATG+TGG | 0.564953 | 1_3:+35669807 | Msa0116600:three_prime_UTR |
| ACTCAGGAACAGTTTCGATC+CGG | 0.567598 | 1_3:-35667353 | None:intergenic |
| GCTACTGCTATCAAGGCTGC+AGG | 0.570583 | 1_3:+35669184 | Msa0116600:CDS |
| CCCTGATGCCGAGAAGGCGA+AGG | 0.570637 | 1_3:+35667458 | Msa0116600:CDS |
| ACGTCCGGTACCCCAGGACT+CGG | 0.570995 | 1_3:-35667118 | None:intergenic |
| TGAAGGTGTTGAGAAGACTA+AGG | 0.571093 | 1_3:+35667401 | Msa0116600:CDS |
| AGAATCTCAATGTTATGTTG+AGG | 0.573663 | 1_3:+35667889 | Msa0116600:CDS |
| CGTAGGTATATCTCTCGTAA+GGG | 0.577073 | 1_3:+35667522 | Msa0116600:CDS |
| GCAGAATCACCAACAACAAG+AGG | 0.578714 | 1_3:-35667378 | None:intergenic |
| GTGGACGAAGTTGACGATGT+CGG | 0.580395 | 1_3:-35667028 | None:intergenic |
| TGTATGTAATGCTTCAAGAA+GGG | 0.582120 | 1_3:+35669676 | Msa0116600:three_prime_UTR |
| AGCTTACCCTGATGCCGAGA+AGG | 0.582607 | 1_3:+35667452 | Msa0116600:CDS |
| GGTACCCCAGGACTCGGCGG+AGG | 0.582954 | 1_3:-35667112 | None:intergenic |
| CTTTACCAGGACGGATCCCA+AGG | 0.583493 | 1_3:-35667485 | None:intergenic |
| GTGCCATTTACGCCAGATCC+GGG | 0.584645 | 1_3:-35667241 | None:intergenic |
| CTTATGCTAAGACTGCTAAG+AGG | 0.584978 | 1_3:+35667919 | Msa0116600:CDS |
| GACGAGAGGACGAGCTGCGG+CGG | 0.586898 | 1_3:-35666920 | None:intergenic |
| TGCTAAGACTGCTAAGAGGA+TGG | 0.588122 | 1_3:+35667923 | Msa0116600:CDS |
| TCAGAGAGAAAATGAAATGG+TGG | 0.589890 | 1_3:-35666872 | None:intergenic |
| TCGGTACCATAAACAATCAA+AGG | 0.593031 | 1_3:-35667546 | None:intergenic |
| ACAGAGATCTAGCTCATCTG+TGG | 0.594905 | 1_3:+35669699 | Msa0116600:three_prime_UTR |
| ATAACATTGAGATTCTTCAA+AGG | 0.595302 | 1_3:-35667882 | None:intergenic |
| CATTTACGCCAGATCCGGGT+AGG | 0.597970 | 1_3:-35667237 | None:intergenic |
| TGAAAGGGTTAAGTCCAAGA+AGG | 0.600060 | 1_3:+35667962 | Msa0116600:CDS |
| GCATGACATCAGGGATTGGG+AGG | 0.602783 | 1_3:-35666990 | None:intergenic |
| AAGGTAAAATGCGTAACCGT+AGG | 0.603588 | 1_3:+35667505 | Msa0116600:CDS |
| GGAGGTGGTACCCACCGTGC+CGG | 0.603632 | 1_3:+35667168 | Msa0116600:CDS |
| GTACCACCTCCGGCAACACG+AGG | 0.605092 | 1_3:-35667156 | None:intergenic |
| TGTTCAGAGAGAAAATGAAA+TGG | 0.605978 | 1_3:-35666875 | None:intergenic |
| AATCTTCCTAAATGCCCACC+AGG | 0.605991 | 1_3:-35667654 | None:intergenic |
| CCAACAACAAGAGGAAACTC+AGG | 0.606988 | 1_3:-35667369 | None:intergenic |
| CTGTGAAGAAGGATGTGAAG+AGG | 0.612591 | 1_3:+35667841 | Msa0116600:CDS |
| CCACACCGTTGAAGGTGACA+TGG | 0.613167 | 1_3:+35666948 | Msa0116600:CDS |
| TGTGAAGAAGGATGTGAAGA+GGG | 0.613222 | 1_3:+35667842 | Msa0116600:CDS |
| GAAGGGTTATGTGCTTCCTA+GGG | 0.613508 | 1_3:+35667752 | Msa0116600:CDS |
| CGAAAGCAGCTTGTCCGGCA+CGG | 0.614513 | 1_3:-35667182 | None:intergenic |
| CGAAGTTGACGATGTCGGGA+CGG | 0.617896 | 1_3:-35667023 | None:intergenic |
| TTGAGATCACCAATGTTGAA+AGG | 0.623070 | 1_3:+35667610 | Msa0116600:CDS |
| AAGCCTTCGGAGAAGAAGAA+GGG | 0.625782 | 1_3:+35667735 | Msa0116600:CDS |
| TCAAGGCTGCAGGAAAAGCA+TGG | 0.627406 | 1_3:+35669194 | Msa0116600:CDS |
| TGGCTGCACGCATGACATCA+GGG | 0.628185 | 1_3:-35666999 | None:intergenic |
| CGTATCCCTCGTGTTGCCGG+AGG | 0.628937 | 1_3:+35667150 | Msa0116600:CDS |
| CCACGAGCGAGAACAAGTGA+AGG | 0.635968 | 1_3:-35667327 | None:intergenic |
| CAAACCTCCGCCGAGTCCTG+GGG | 0.638408 | 1_3:+35667108 | Msa0116600:CDS |
| ATGGCAACGCAAAATTTGAG+TGG | 0.639402 | 1_3:-35669519 | None:intergenic |
| CATGACATCAGGGATTGGGA+GGG | 0.640964 | 1_3:-35666989 | None:intergenic |
| TTCGGTAACATGTGCCGTGG+TGG | 0.641371 | 1_3:+35667201 | Msa0116600:CDS |
| CCATGTCACCTTCAACGGTG+TGG | 0.644494 | 1_3:-35666948 | None:intergenic |
| CAGAGATCTAGCTCATCTGT+GGG | 0.650289 | 1_3:+35669700 | Msa0116600:three_prime_UTR |
| AAATATTGGATTACAACGAG+AGG | 0.654014 | 1_3:-35669442 | None:intergenic |
| AAGCAGCTTGTCCGGCACGG+TGG | 0.654435 | 1_3:-35667179 | None:intergenic |
| AGTGACGAGAGGACGAGCTG+CGG | 0.658727 | 1_3:-35666923 | None:intergenic |
| ATGGTGAATTCCCAGAACAC+CGG | 0.661262 | 1_3:+35669783 | Msa0116600:three_prime_UTR |
| TCTCACAATGAAGTGTCTCA+TGG | 0.672237 | 1_3:+35669281 | Msa0116600:exon |
| TTTGAGTGGGGCTAAAGGTG+TGG | 0.674405 | 1_3:-35669505 | None:intergenic |
| ACGGTGTGGACAGTGACGAG+AGG | 0.675130 | 1_3:-35666934 | None:intergenic |
| ACATTGGTGATCTCAACACC+AGG | 0.677167 | 1_3:-35667603 | None:intergenic |
| TCCGGTACCCCAGGACTCGG+CGG | 0.686621 | 1_3:-35667115 | None:intergenic |
| GGCAACGCAAAATTTGAGTG+GGG | 0.695251 | 1_3:-35669517 | None:intergenic |
| GCTTTCGGTAACATGTGCCG+TGG | 0.703272 | 1_3:+35667198 | Msa0116600:CDS |
| CCTTACGAGAGATATACCTA+CGG | 0.703573 | 1_3:-35667521 | None:intergenic |
| TACCACCTCCGGCAACACGA+GGG | 0.703891 | 1_3:-35667155 | None:intergenic |
| GAGCAAACATGCGACCACCA+CGG | 0.722368 | 1_3:-35667215 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCATTTTCAAATTCTAAA+GGG | - | chr1_3:35668313-35668332 | None:intergenic | 15.0% |
| !!! | TTATCATTTTCAAATTCTAA+AGG | - | chr1_3:35668314-35668333 | None:intergenic | 15.0% |
| !! | AAAATGATAATCATGTATAT+TGG | + | chr1_3:35668324-35668343 | Msa0116600:intron | 15.0% |
| !! | TGTATAAATGATATTACTAA+TGG | + | chr1_3:35668854-35668873 | Msa0116600:intron | 15.0% |
| !! | ACTAATTAACAACAATGTAA+TGG | - | chr1_3:35668073-35668092 | None:intergenic | 20.0% |
| !! | ATTTGAGTGAAGATTTAATT+TGG | + | chr1_3:35668178-35668197 | Msa0116600:intron | 20.0% |
| !!! | TTCTAAAATGAAACTTAGAT+TGG | + | chr1_3:35668237-35668256 | Msa0116600:intron | 20.0% |
| !!! | ATTTTGAAATATTGTTGATG+TGG | + | chr1_3:35668523-35668542 | Msa0116600:intron | 20.0% |
| !!! | TTTTGAAATATTGTTGATGT+GGG | + | chr1_3:35668524-35668543 | Msa0116600:intron | 20.0% |
| !! | ATAATATTGTATGTTGGAAT+TGG | - | chr1_3:35668903-35668922 | None:intergenic | 20.0% |
| !! | ATTCCAACATACAATATTAT+AGG | + | chr1_3:35668903-35668922 | Msa0116600:intron | 20.0% |
| !! | TAACCTATAATATTGTATGT+TGG | - | chr1_3:35668909-35668928 | None:intergenic | 20.0% |
| !!! | TTTGAGATTATGATATTGTA+AGG | + | chr1_3:35669368-35669387 | Msa0116600:three_prime_UTR | 20.0% |
| !! | AAAATGAAATGGTGGAATTA+GGG | - | chr1_3:35666867-35666886 | None:intergenic | 25.0% |
| !!! | TCTGATTCACATTGATTTTA+CGG | - | chr1_3:35667266-35667285 | None:intergenic | 25.0% |
| !!! | ATCAAGCTTTTGAAATCAAT+TGG | + | chr1_3:35667429-35667448 | Msa0116600:CDS | 25.0% |
| ! | ATTTAGGAAGATTTGTGATT+TGG | + | chr1_3:35667664-35667683 | Msa0116600:CDS | 25.0% |
| ! | ATAACATTGAGATTCTTCAA+AGG | - | chr1_3:35667885-35667904 | None:intergenic | 25.0% |
| !! | TTTAGAATATCTATAACGTG+AGG | - | chr1_3:35668224-35668243 | None:intergenic | 25.0% |
| ! | TTAGATTGGTAAGCAATAAT+AGG | + | chr1_3:35668251-35668270 | Msa0116600:intron | 25.0% |
| !!! | ATTCACCTTTTGTTGTTTTA+TGG | + | chr1_3:35668497-35668516 | Msa0116600:intron | 25.0% |
| ! | ATGATCCATAAAACAACAAA+AGG | - | chr1_3:35668505-35668524 | None:intergenic | 25.0% |
| !! | TTTGAAATATTGTTGATGTG+GGG | + | chr1_3:35668525-35668544 | Msa0116600:intron | 25.0% |
| !! | CTTTAAAAGAGTTCATCAAA+TGG | - | chr1_3:35668649-35668668 | None:intergenic | 25.0% |
| ! | ACAAAGATATTCAACTAACA+TGG | - | chr1_3:35669115-35669134 | None:intergenic | 25.0% |
| !! | AGGTTTTACTTTATTGTCTT+TGG | + | chr1_3:35669343-35669362 | Msa0116600:three_prime_UTR | 25.0% |
| ! | GGAAAAAAATCTTTCATATC+AGG | - | chr1_3:35669424-35669443 | None:intergenic | 25.0% |
| !! | TAAAAAAGTCGCAAATGTTT+TGG | - | chr1_3:35669833-35669852 | None:intergenic | 25.0% |
| ! | GAAAATGAAATGGTGGAATT+AGG | - | chr1_3:35666868-35666887 | None:intergenic | 30.0% |
| TGTTCAGAGAGAAAATGAAA+TGG | - | chr1_3:35666878-35666897 | None:intergenic | 30.0% | |
| AAGATTCAACCTTTCAACAT+TGG | - | chr1_3:35667622-35667641 | None:intergenic | 30.0% | |
| CTTGTCAAAAGAACCATAAA+TGG | - | chr1_3:35667718-35667737 | None:intergenic | 30.0% | |
| AGAATCTCAATGTTATGTTG+AGG | + | chr1_3:35667889-35667908 | Msa0116600:CDS | 30.0% | |
| GAGGACTAAAACAAATTCAA+GGG | - | chr1_3:35668205-35668224 | None:intergenic | 30.0% | |
| TGAGGACTAAAACAAATTCA+AGG | - | chr1_3:35668206-35668225 | None:intergenic | 30.0% | |
| CATGCTTGACATTATTAACT+TGG | + | chr1_3:35668371-35668390 | Msa0116600:intron | 30.0% | |
| ATCTCTCATTTCCAATATGA+TGG | + | chr1_3:35668404-35668423 | Msa0116600:intron | 30.0% | |
| TAATGTCAATGCCATCATAT+TGG | - | chr1_3:35668418-35668437 | None:intergenic | 30.0% | |
| ! | GAAATGTATTTGAAACCAAG+TGG | - | chr1_3:35668442-35668461 | None:intergenic | 30.0% |
| TTGAAATATTGTTGATGTGG+GGG | + | chr1_3:35668526-35668545 | Msa0116600:intron | 30.0% | |
| ACAAGAGTGAATACACAATT+TGG | - | chr1_3:35668590-35668609 | None:intergenic | 30.0% | |
| ! | AGAGTTCATCAAATGGATTT+GGG | - | chr1_3:35668642-35668661 | None:intergenic | 30.0% |
| ! | AAGAGTTCATCAAATGGATT+TGG | - | chr1_3:35668643-35668662 | None:intergenic | 30.0% |
| !!! | TCATTTTTAGTGTTACTTGC+AGG | + | chr1_3:35668676-35668695 | Msa0116600:intron | 30.0% |
| !!! | ATAGAGACTGATTTGCTTTT+TGG | + | chr1_3:35668816-35668835 | Msa0116600:intron | 30.0% |
| !!! | TTTTTGCTGTTTGTCTACTT+TGG | + | chr1_3:35669082-35669101 | Msa0116600:intron | 30.0% |
| ! | AAAAGCATGGTACAATACTA+TGG | + | chr1_3:35669207-35669226 | Msa0116600:CDS | 30.0% |
| CTAATTGAATGTTGTTCTCT+AGG | + | chr1_3:35669323-35669342 | Msa0116600:three_prime_UTR | 30.0% | |
| AAATATTGGATTACAACGAG+AGG | - | chr1_3:35669445-35669464 | None:intergenic | 30.0% | |
| TCCAATATTTCGACTTCATA+TGG | + | chr1_3:35669455-35669474 | Msa0116600:three_prime_UTR | 30.0% | |
| TCCATATGAAGTCGAAATAT+TGG | - | chr1_3:35669459-35669478 | None:intergenic | 30.0% | |
| TTGTATGTAATGCTTCAAGA+AGG | + | chr1_3:35669675-35669694 | Msa0116600:three_prime_UTR | 30.0% | |
| TGTATGTAATGCTTCAAGAA+GGG | + | chr1_3:35669676-35669695 | Msa0116600:three_prime_UTR | 30.0% | |
| !!! | CTTATTTTGACCATTCAGAA+TGG | + | chr1_3:35669764-35669783 | Msa0116600:three_prime_UTR | 30.0% |
| AAATGAGAATGCACAAAATG+TGG | + | chr1_3:35669807-35669826 | Msa0116600:three_prime_UTR | 30.0% | |
| !! | AATGGTGGAATTAGGGTTTT+GGG | - | chr1_3:35666860-35666879 | None:intergenic | 35.0% |
| !! | AAATGGTGGAATTAGGGTTT+TGG | - | chr1_3:35666861-35666880 | None:intergenic | 35.0% |
| TCAGAGAGAAAATGAAATGG+TGG | - | chr1_3:35666875-35666894 | None:intergenic | 35.0% | |
| ! | TTACGCATTTTACCTTTACC+AGG | - | chr1_3:35667501-35667520 | None:intergenic | 35.0% |
| AAGGGTCCTTTGATTGTTTA+TGG | + | chr1_3:35667540-35667559 | Msa0116600:CDS | 35.0% | |
| TCGGTACCATAAACAATCAA+AGG | - | chr1_3:35667549-35667568 | None:intergenic | 35.0% | |
| ! | TTGATTGTTTATGGTACCGA+AGG | + | chr1_3:35667549-35667568 | Msa0116600:CDS | 35.0% |
| ! | AAAGCTTTTCGCAATATTCC+TGG | + | chr1_3:35667585-35667604 | Msa0116600:CDS | 35.0% |
| TTGAGATCACCAATGTTGAA+AGG | + | chr1_3:35667610-35667629 | Msa0116600:CDS | 35.0% | |
| GAGAAGTTGGATTCCATTTA+TGG | + | chr1_3:35667702-35667721 | Msa0116600:CDS | 35.0% | |
| ! | TGGTGAATTCTGATTTGACT+AGG | + | chr1_3:35667781-35667800 | Msa0116600:CDS | 35.0% |
| !! | ATGAGATTCAGAGTGTTGTT+AGG | + | chr1_3:35667817-35667836 | Msa0116600:CDS | 35.0% |
| CAAAGGATTCTTCTTCAAAG+TGG | - | chr1_3:35667868-35667887 | None:intergenic | 35.0% | |
| ! | CTTATCAAGCTTTTCCTTCT+TGG | - | chr1_3:35667979-35667998 | None:intergenic | 35.0% |
| AGGAAAAGCTTGATAAGAAG+AGG | + | chr1_3:35667982-35668001 | Msa0116600:CDS | 35.0% | |
| ACTTGCAGGTTTAGATTGAT+TGG | + | chr1_3:35668690-35668709 | Msa0116600:intron | 35.0% | |
| CAACCATGTATGAAGATGAA+TGG | + | chr1_3:35669019-35669038 | Msa0116600:intron | 35.0% | |
| CAACCATTCATCTTCATACA+TGG | - | chr1_3:35669025-35669044 | None:intergenic | 35.0% | |
| ACAGCAAAAACATGCATCAA+GGG | - | chr1_3:35669072-35669091 | None:intergenic | 35.0% | |
| AACAGCAAAAACATGCATCA+AGG | - | chr1_3:35669073-35669092 | None:intergenic | 35.0% | |
| AATTCGACAACTTCTCCAAA+TGG | + | chr1_3:35669251-35669270 | Msa0116600:CDS | 35.0% | |
| ! | AACTGGTGTTTTCTACAGAT+CGG | - | chr1_3:35669602-35669621 | None:intergenic | 35.0% |
| ! | TTTTGTGCATTCTCATTTGC+CGG | - | chr1_3:35669805-35669824 | None:intergenic | 35.0% |
| AACACACACACACACAACAA+TGG | + | chr1_3:35666894-35666913 | Msa0116600:exon | 40.0% | |
| !! | TGAAGGTGTTGAGAAGACTA+AGG | + | chr1_3:35667401-35667420 | Msa0116600:CDS | 40.0% |
| ! | GCATTTTACCTTTACCAGGA+CGG | - | chr1_3:35667497-35667516 | None:intergenic | 40.0% |
| AAGGTAAAATGCGTAACCGT+AGG | + | chr1_3:35667505-35667524 | Msa0116600:CDS | 40.0% | |
| CCTTACGAGAGATATACCTA+CGG | - | chr1_3:35667524-35667543 | None:intergenic | 40.0% | |
| CGTAGGTATATCTCTCGTAA+GGG | + | chr1_3:35667522-35667541 | Msa0116600:CDS | 40.0% | |
| !!! | AATCTTTTGAAGCTTGCACC+TGG | + | chr1_3:35667636-35667655 | Msa0116600:CDS | 40.0% |
| TAAGACTGCTTTCGAGAAGT+TGG | + | chr1_3:35667689-35667708 | Msa0116600:CDS | 40.0% | |
| ! | TGGTTCTTTTGACAAGCCTT+CGG | + | chr1_3:35667722-35667741 | Msa0116600:CDS | 40.0% |
| TGTGAAGAAGGATGTGAAGA+GGG | + | chr1_3:35667842-35667861 | Msa0116600:CDS | 40.0% | |
| CTCTTAGCAGTCTTAGCATA+AGG | - | chr1_3:35667921-35667940 | None:intergenic | 40.0% | |
| CTTATGCTAAGACTGCTAAG+AGG | + | chr1_3:35667919-35667938 | Msa0116600:CDS | 40.0% | |
| ! | TTTGCTTGCTGAAGCTGAAA+GGG | + | chr1_3:35667947-35667966 | Msa0116600:CDS | 40.0% |
| TGAAAGGGTTAAGTCCAAGA+AGG | + | chr1_3:35667962-35667981 | Msa0116600:CDS | 40.0% | |
| ATAGGCTATGTTGCTCTGTA+AGG | + | chr1_3:35668269-35668288 | Msa0116600:intron | 40.0% | |
| !! | TGGCATTGACATTATCCACT+TGG | + | chr1_3:35668424-35668443 | Msa0116600:intron | 40.0% |
| !! | GTCCTGCAATTTCAAGTTTC+AGG | + | chr1_3:35668563-35668582 | Msa0116600:intron | 40.0% |
| GACCTGAAACTTGAAATTGC+AGG | - | chr1_3:35668568-35668587 | None:intergenic | 40.0% | |
| ! | ATCAAATGGATTTGGGTCAC+TGG | - | chr1_3:35668635-35668654 | None:intergenic | 40.0% |
| GACAACTTCTCCAAATGGTT+GGG | + | chr1_3:35669256-35669275 | Msa0116600:CDS | 40.0% | |
| ! | TCTCACAATGAAGTGTCTCA+TGG | + | chr1_3:35669281-35669300 | Msa0116600:exon | 40.0% |
| CAAAATTTGAGTGGGGCTAA+AGG | - | chr1_3:35669513-35669532 | None:intergenic | 40.0% | |
| TGGCAACGCAAAATTTGAGT+GGG | - | chr1_3:35669521-35669540 | None:intergenic | 40.0% | |
| ATGGCAACGCAAAATTTGAG+TGG | - | chr1_3:35669522-35669541 | None:intergenic | 40.0% | |
| TCAGTGTGTTCAACAGAAGA+TGG | - | chr1_3:35669541-35669560 | None:intergenic | 40.0% | |
| TCACTACTCTAATGTAGCTC+TGG | + | chr1_3:35669568-35669587 | Msa0116600:three_prime_UTR | 40.0% | |
| AGATGTTCATCACGATCAAC+TGG | - | chr1_3:35669619-35669638 | None:intergenic | 40.0% | |
| TGGGAATTCACCATTCTGAA+TGG | - | chr1_3:35669777-35669796 | None:intergenic | 40.0% | |
| !! | CGTTTTTGGAGATGTTGGAG+TGG | - | chr1_3:35667050-35667069 | None:intergenic | 45.0% |
| ACTCAGGAACAGTTTCGATC+CGG | - | chr1_3:35667356-35667375 | None:intergenic | 45.0% | |
| CCAACAACAAGAGGAAACTC+AGG | - | chr1_3:35667372-35667391 | None:intergenic | 45.0% | |
| ! | CCTGAGTTTCCTCTTGTTGT+TGG | + | chr1_3:35667369-35667388 | Msa0116600:CDS | 45.0% |
| GCAGAATCACCAACAACAAG+AGG | - | chr1_3:35667381-35667400 | None:intergenic | 45.0% | |
| !! | GTTGTTGGTGATTCTGCTGA+AGG | + | chr1_3:35667384-35667403 | Msa0116600:CDS | 45.0% |
| CCGTAGGTATATCTCTCGTA+AGG | + | chr1_3:35667521-35667540 | Msa0116600:CDS | 45.0% | |
| TTTCACTGCTTTCGCTCCTT+CGG | - | chr1_3:35667568-35667587 | None:intergenic | 45.0% | |
| ! | ACATTGGTGATCTCAACACC+AGG | - | chr1_3:35667606-35667625 | None:intergenic | 45.0% |
| !!! | TTTTGAAGCTTGCACCTGGT+GGG | + | chr1_3:35667640-35667659 | Msa0116600:CDS | 45.0% |
| AATCTTCCTAAATGCCCACC+AGG | - | chr1_3:35667657-35667676 | None:intergenic | 45.0% | |
| AAGCCTTCGGAGAAGAAGAA+GGG | + | chr1_3:35667735-35667754 | Msa0116600:CDS | 45.0% | |
| TAACCCTTCTTCTTCTCCGA+AGG | - | chr1_3:35667741-35667760 | None:intergenic | 45.0% | |
| AGAAGGGTTATGTGCTTCCT+AGG | + | chr1_3:35667751-35667770 | Msa0116600:CDS | 45.0% | |
| GAAGGGTTATGTGCTTCCTA+GGG | + | chr1_3:35667752-35667771 | Msa0116600:CDS | 45.0% | |
| GAATTCACCATCTTAGCCCT+AGG | - | chr1_3:35667771-35667790 | None:intergenic | 45.0% | |
| TGTTGTTAGGCCTGTGAAGA+AGG | + | chr1_3:35667830-35667849 | Msa0116600:CDS | 45.0% | |
| CTCTTCACATCCTTCTTCAC+AGG | - | chr1_3:35667843-35667862 | None:intergenic | 45.0% | |
| CTGTGAAGAAGGATGTGAAG+AGG | + | chr1_3:35667841-35667860 | Msa0116600:CDS | 45.0% | |
| TGCTAAGACTGCTAAGAGGA+TGG | + | chr1_3:35667923-35667942 | Msa0116600:CDS | 45.0% | |
| ! | CTTTGCTTGCTGAAGCTGAA+AGG | + | chr1_3:35667946-35667965 | Msa0116600:CDS | 45.0% |
| GAAGAGGAAGACTGTCTCTA+AGG | + | chr1_3:35667998-35668017 | Msa0116600:CDS | 45.0% | |
| GCAAAAACATGCATCAAGGG+AGG | - | chr1_3:35669069-35669088 | None:intergenic | 45.0% | |
| AATTACCCCTGTTCATTCCC+AGG | + | chr1_3:35669156-35669175 | Msa0116600:intron | 45.0% | |
| TTCTTCCTGGGAATGAACAG+GGG | - | chr1_3:35669164-35669183 | None:intergenic | 45.0% | |
| CTTCTTCCTGGGAATGAACA+GGG | - | chr1_3:35669165-35669184 | None:intergenic | 45.0% | |
| GATAGCAGTAGCTTCTTCCT+GGG | - | chr1_3:35669176-35669195 | None:intergenic | 45.0% | |
| TGATAGCAGTAGCTTCTTCC+TGG | - | chr1_3:35669177-35669196 | None:intergenic | 45.0% | |
| GGAAGAAGCTACTGCTATCA+AGG | + | chr1_3:35669177-35669196 | Msa0116600:intron | 45.0% | |
| CGACAACTTCTCCAAATGGT+TGG | + | chr1_3:35669255-35669274 | Msa0116600:CDS | 45.0% | |
| TTGTGAGACACCCAACCATT+TGG | - | chr1_3:35669269-35669288 | None:intergenic | 45.0% | |
| GGCAACGCAAAATTTGAGTG+GGG | - | chr1_3:35669520-35669539 | None:intergenic | 45.0% | |
| ! | ACAGAGATCTAGCTCATCTG+TGG | + | chr1_3:35669699-35669718 | Msa0116600:three_prime_UTR | 45.0% |
| ! | CAGAGATCTAGCTCATCTGT+GGG | + | chr1_3:35669700-35669719 | Msa0116600:three_prime_UTR | 45.0% |
| ATGGTGAATTCCCAGAACAC+CGG | + | chr1_3:35669783-35669802 | Msa0116600:three_prime_UTR | 45.0% | |
| TTCTCATTTGCCGGTGTTCT+GGG | - | chr1_3:35669796-35669815 | None:intergenic | 45.0% | |
| ATTCTCATTTGCCGGTGTTC+TGG | - | chr1_3:35669797-35669816 | None:intergenic | 45.0% | |
| !!! | GGTGGAATTAGGGTTTTGGG+TGG | - | chr1_3:35666857-35666876 | None:intergenic | 50.0% |
| AGTGGCCATGTCACCTTCAA+CGG | - | chr1_3:35666956-35666975 | None:intergenic | 50.0% | |
| CATGACATCAGGGATTGGGA+GGG | - | chr1_3:35666992-35667011 | None:intergenic | 50.0% | |
| CACGCATGACATCAGGGATT+GGG | - | chr1_3:35666996-35667015 | None:intergenic | 50.0% | |
| TGGACGAAGTTGACGATGTC+GGG | - | chr1_3:35667030-35667049 | None:intergenic | 50.0% | |
| GTGGACGAAGTTGACGATGT+CGG | - | chr1_3:35667031-35667050 | None:intergenic | 50.0% | |
| !! | ACGGGCGTTTTTGGAGATGT+TGG | - | chr1_3:35667055-35667074 | None:intergenic | 50.0% |
| !! | GTATGGTTGACGGGCGTTTT+TGG | - | chr1_3:35667064-35667083 | None:intergenic | 50.0% |
| GTTACCGAAAGCAGCTTGTC+CGG | - | chr1_3:35667190-35667209 | None:intergenic | 50.0% | |
| AAGGCTATCCTTCGCCTTCT+CGG | - | chr1_3:35667469-35667488 | None:intergenic | 50.0% | |
| AGAAGGCGAAGGATAGCCTT+GGG | + | chr1_3:35667469-35667488 | Msa0116600:CDS | 50.0% | |
| !!! | CTTTTGAAGCTTGCACCTGG+TGG | + | chr1_3:35667639-35667658 | Msa0116600:CDS | 50.0% |
| CAAGCCTTCGGAGAAGAAGA+AGG | + | chr1_3:35667734-35667753 | Msa0116600:CDS | 50.0% | |
| TGTGCTTCCTAGGGCTAAGA+TGG | + | chr1_3:35667761-35667780 | Msa0116600:CDS | 50.0% | |
| GCTTCTTCCTGGGAATGAAC+AGG | - | chr1_3:35669166-35669185 | None:intergenic | 50.0% | |
| TCAAGGCTGCAGGAAAAGCA+TGG | + | chr1_3:35669194-35669213 | Msa0116600:CDS | 50.0% | |
| TTTGAGTGGGGCTAAAGGTG+TGG | - | chr1_3:35669508-35669527 | None:intergenic | 50.0% | |
| GTCACTGTCCACACCGTTGA+AGG | + | chr1_3:35666940-35666959 | Msa0116600:CDS | 55.0% | |
| CCATGTCACCTTCAACGGTG+TGG | - | chr1_3:35666951-35666970 | None:intergenic | 55.0% | |
| CCACACCGTTGAAGGTGACA+TGG | + | chr1_3:35666948-35666967 | Msa0116600:CDS | 55.0% | |
| GCATGACATCAGGGATTGGG+AGG | - | chr1_3:35666993-35667012 | None:intergenic | 55.0% | |
| GCACGCATGACATCAGGGAT+TGG | - | chr1_3:35666997-35667016 | None:intergenic | 55.0% | |
| TGGCTGCACGCATGACATCA+GGG | - | chr1_3:35667002-35667021 | None:intergenic | 55.0% | |
| ATGGCTGCACGCATGACATC+AGG | - | chr1_3:35667003-35667022 | None:intergenic | 55.0% | |
| CGAAGTTGACGATGTCGGGA+CGG | - | chr1_3:35667026-35667045 | None:intergenic | 55.0% | |
| !! | AGGTTTGGTGACCGGCTTTG+CGG | - | chr1_3:35667095-35667114 | None:intergenic | 55.0% |
| GCTTTCGGTAACATGTGCCG+TGG | + | chr1_3:35667198-35667217 | Msa0116600:CDS | 55.0% | |
| TTCGGTAACATGTGCCGTGG+TGG | + | chr1_3:35667201-35667220 | Msa0116600:CDS | 55.0% | |
| GAGCAAACATGCGACCACCA+CGG | - | chr1_3:35667218-35667237 | None:intergenic | 55.0% | |
| GTCGCATGTTTGCTCCTACC+CGG | + | chr1_3:35667223-35667242 | Msa0116600:CDS | 55.0% | |
| TGTTTGCTCCTACCCGGATC+TGG | + | chr1_3:35667229-35667248 | Msa0116600:CDS | 55.0% | |
| CATTTACGCCAGATCCGGGT+AGG | - | chr1_3:35667240-35667259 | None:intergenic | 55.0% | |
| CTACCCGGATCTGGCGTAAA+TGG | + | chr1_3:35667238-35667257 | Msa0116600:CDS | 55.0% | |
| !! | GTGCCATTTACGCCAGATCC+GGG | - | chr1_3:35667244-35667263 | None:intergenic | 55.0% |
| !! | GGTGCCATTTACGCCAGATC+CGG | - | chr1_3:35667245-35667264 | None:intergenic | 55.0% |
| CCACGAGCGAGAACAAGTGA+AGG | - | chr1_3:35667330-35667349 | None:intergenic | 55.0% | |
| CCTTCACTTGTTCTCGCTCG+TGG | + | chr1_3:35667327-35667346 | Msa0116600:CDS | 55.0% | |
| TTGTTCTCGCTCGTGGTCAC+CGG | + | chr1_3:35667334-35667353 | Msa0116600:CDS | 55.0% | |
| AGCTTACCCTGATGCCGAGA+AGG | + | chr1_3:35667452-35667471 | Msa0116600:CDS | 55.0% | |
| GAGAAGGCGAAGGATAGCCT+TGG | + | chr1_3:35667468-35667487 | Msa0116600:CDS | 55.0% | |
| CTTTACCAGGACGGATCCCA+AGG | - | chr1_3:35667488-35667507 | None:intergenic | 55.0% | |
| CTTGGGATCCGTCCTGGTAA+AGG | + | chr1_3:35667486-35667505 | Msa0116600:CDS | 55.0% | |
| ! | CTTGCACCTGGTGGGCATTT+AGG | + | chr1_3:35667648-35667667 | Msa0116600:CDS | 55.0% |
| AAGGGAGGAAGCAGCACACA+TGG | - | chr1_3:35669054-35669073 | None:intergenic | 55.0% | |
| GCTACTGCTATCAAGGCTGC+AGG | + | chr1_3:35669184-35669203 | Msa0116600:CDS | 55.0% | |
| AGTGACGAGAGGACGAGCTG+CGG | - | chr1_3:35666926-35666945 | None:intergenic | 60.0% | |
| ACGGTGTGGACAGTGACGAG+AGG | - | chr1_3:35666937-35666956 | None:intergenic | 60.0% | |
| TCAGGGATTGGGAGGGAGGT+GGG | - | chr1_3:35666985-35667004 | None:intergenic | 60.0% | |
| ATCAGGGATTGGGAGGGAGG+TGG | - | chr1_3:35666986-35667005 | None:intergenic | 60.0% | |
| GACATCAGGGATTGGGAGGG+AGG | - | chr1_3:35666989-35667008 | None:intergenic | 60.0% | |
| GTTGACGATGTCGGGACGGA+TGG | - | chr1_3:35667022-35667041 | None:intergenic | 60.0% | |
| GCTGACGGCGTATGGTTGAC+GGG | - | chr1_3:35667073-35667092 | None:intergenic | 60.0% | |
| GGCTGACGGCGTATGGTTGA+CGG | - | chr1_3:35667074-35667093 | None:intergenic | 60.0% | |
| GATACGGGAGACAGCACGTC+CGG | - | chr1_3:35667136-35667155 | None:intergenic | 60.0% | |
| TCCCGTATCCCTCGTGTTGC+CGG | + | chr1_3:35667147-35667166 | Msa0116600:CDS | 60.0% | |
| TCCGGCAACACGAGGGATAC+GGG | - | chr1_3:35667151-35667170 | None:intergenic | 60.0% | |
| CTCCGGCAACACGAGGGATA+CGG | - | chr1_3:35667152-35667171 | None:intergenic | 60.0% | |
| TACCACCTCCGGCAACACGA+GGG | - | chr1_3:35667158-35667177 | None:intergenic | 60.0% | |
| CGAAAGCAGCTTGTCCGGCA+CGG | - | chr1_3:35667185-35667204 | None:intergenic | 60.0% | |
| ! | CGTGCCGGACAAGCTGCTTT+CGG | + | chr1_3:35667183-35667202 | Msa0116600:CDS | 60.0% |
| CCTTCGCCTTCTCGGCATCA+GGG | - | chr1_3:35667461-35667480 | None:intergenic | 60.0% | |
| TCCTTCGCCTTCTCGGCATC+AGG | - | chr1_3:35667462-35667481 | None:intergenic | 60.0% | |
| ! | GATAGCCTTGGGATCCGTCC+TGG | + | chr1_3:35667480-35667499 | Msa0116600:CDS | 60.0% |
| !! | GAGGGAGGTGGGAGTGTCAG+TGG | - | chr1_3:35666974-35666993 | None:intergenic | 65.0% |
| GCTTTGCGGCTGACGGCGTA+TGG | - | chr1_3:35667081-35667100 | None:intergenic | 65.0% | |
| TACGCCGTCAGCCGCAAAGC+CGG | + | chr1_3:35667081-35667100 | Msa0116600:CDS | 65.0% | |
| ! | GTGACCGGCTTTGCGGCTGA+CGG | - | chr1_3:35667088-35667107 | None:intergenic | 65.0% |
| !! | CTCGGCGGAGGTTTGGTGAC+CGG | - | chr1_3:35667103-35667122 | None:intergenic | 65.0% |
| ACCAAACCTCCGCCGAGTCC+TGG | + | chr1_3:35667106-35667125 | Msa0116600:CDS | 65.0% | |
| CCAAACCTCCGCCGAGTCCT+GGG | + | chr1_3:35667107-35667126 | Msa0116600:CDS | 65.0% | |
| CAAACCTCCGCCGAGTCCTG+GGG | + | chr1_3:35667108-35667127 | Msa0116600:CDS | 65.0% | |
| ACGTCCGGTACCCCAGGACT+CGG | - | chr1_3:35667121-35667140 | None:intergenic | 65.0% | |
| CGTATCCCTCGTGTTGCCGG+AGG | + | chr1_3:35667150-35667169 | Msa0116600:CDS | 65.0% | |
| ATCCCTCGTGTTGCCGGAGG+TGG | + | chr1_3:35667153-35667172 | Msa0116600:CDS | 65.0% | |
| GTACCACCTCCGGCAACACG+AGG | - | chr1_3:35667159-35667178 | None:intergenic | 65.0% | |
| AGCAGCTTGTCCGGCACGGT+GGG | - | chr1_3:35667181-35667200 | None:intergenic | 65.0% | |
| AAGCAGCTTGTCCGGCACGG+TGG | - | chr1_3:35667182-35667201 | None:intergenic | 65.0% | |
| CCCTGATGCCGAGAAGGCGA+AGG | + | chr1_3:35667458-35667477 | Msa0116600:CDS | 65.0% | |
| GACGAGAGGACGAGCTGCGG+CGG | - | chr1_3:35666923-35666942 | None:intergenic | 70.0% | |
| CCCAGGACTCGGCGGAGGTT+TGG | - | chr1_3:35667110-35667129 | None:intergenic | 70.0% | |
| TCCGCCGAGTCCTGGGGTAC+CGG | + | chr1_3:35667114-35667133 | Msa0116600:CDS | 70.0% | |
| TCCGGTACCCCAGGACTCGG+CGG | - | chr1_3:35667118-35667137 | None:intergenic | 70.0% | |
| GACAGCACGTCCGGTACCCC+AGG | - | chr1_3:35667127-35667146 | None:intergenic | 70.0% | |
| GGCACGGTGGGTACCACCTC+CGG | - | chr1_3:35667169-35667188 | None:intergenic | 70.0% | |
| GGAGGTGGTACCCACCGTGC+CGG | + | chr1_3:35667168-35667187 | Msa0116600:CDS | 70.0% | |
| GAGAGGACGAGCTGCGGCGG+CGG | - | chr1_3:35666920-35666939 | None:intergenic | 75.0% | |
| GGTACCCCAGGACTCGGCGG+AGG | - | chr1_3:35667115-35667134 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 35666854 | 35669875 | 35666854 | ID=Msa0116600;Name=Msa0116600 |
| chr1_3 | mRNA | 35666854 | 35669875 | 35666854 | ID=Msa0116600-mRNA-1;Parent=Msa0116600;Name=Msa0116600-mRNA-1;_AED=0.00;_eAED=0.00;_QI=59|1|1|1|1|1|2|584|406 |
| chr1_3 | exon | 35666854 | 35668019 | 35666854 | ID=Msa0116600-mRNA-1:exon:11474;Parent=Msa0116600-mRNA-1 |
| chr1_3 | exon | 35669178 | 35669875 | 35669178 | ID=Msa0116600-mRNA-1:exon:11475;Parent=Msa0116600-mRNA-1 |
| chr1_3 | five_prime_UTR | 35666854 | 35666912 | 35666854 | ID=Msa0116600-mRNA-1:five_prime_utr;Parent=Msa0116600-mRNA-1 |
| chr1_3 | CDS | 35666913 | 35668019 | 35666913 | ID=Msa0116600-mRNA-1:cds;Parent=Msa0116600-mRNA-1 |
| chr1_3 | CDS | 35669178 | 35669291 | 35669178 | ID=Msa0116600-mRNA-1:cds;Parent=Msa0116600-mRNA-1 |
| chr1_3 | three_prime_UTR | 35669292 | 35669875 | 35669292 | ID=Msa0116600-mRNA-1:three_prime_utr;Parent=Msa0116600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
