Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076580 | sp|Q9LE82|RAGP1_ARATH | 69.307 | 505 | 148 | 3 | 11 | 514 | 1 | 499 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076580 | Q9SBS1 | 98.687 | 533 | 7 | 0 | 11 | 543 | 1 | 533 | 0.0 | 1058 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076580 | Msa0523810 | 0.835729 | 1.416297e-56 | -8.615850e-47 |
| Msa0076580 | Msa0534750 | 0.818419 | 1.979610e-52 | -8.615850e-47 |
| Msa0076580 | Msa0593700 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0076580 | Msa0656810 | 0.802966 | 4.366255e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076580 | MtrunA17_Chr1g0185561 | 97.186 | 533 | 15 | 0 | 11 | 543 | 1 | 533 | 0.0 | 1043 |
| Msa0076580 | MtrunA17_Chr1g0205881 | 67.963 | 540 | 168 | 3 | 6 | 543 | 2 | 538 | 0.0 | 714 |
| Msa0076580 | MtrunA17_Chr5g0414351 | 26.748 | 329 | 210 | 4 | 214 | 512 | 216 | 543 | 1.08e-22 | 102 |
| Msa0076580 | MtrunA17_Chr5g0414351 | 27.138 | 269 | 196 | 0 | 234 | 502 | 209 | 477 | 1.95e-20 | 95.1 |
| Msa0076580 | MtrunA17_Chr5g0414351 | 25.081 | 307 | 198 | 4 | 202 | 507 | 151 | 426 | 4.73e-17 | 84.3 |
| Msa0076580 | MtrunA17_Chr5g0414351 | 25.362 | 276 | 174 | 4 | 214 | 457 | 328 | 603 | 2.80e-11 | 66.2 |
| Msa0076580 | MtrunA17_Chr3g0134391 | 46.067 | 89 | 45 | 2 | 27 | 114 | 36 | 122 | 7.68e-18 | 80.9 |
| Msa0076580 | MtrunA17_Chr1g0152901 | 35.000 | 100 | 63 | 1 | 16 | 115 | 17 | 114 | 1.78e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076580 | AT3G63130.1 | 69.307 | 505 | 148 | 3 | 11 | 514 | 1 | 499 | 0.0 | 709 |
| Msa0076580 | AT3G63130.2 | 69.307 | 505 | 148 | 3 | 11 | 514 | 1 | 499 | 0.0 | 709 |
| Msa0076580 | AT5G19320.1 | 67.748 | 493 | 157 | 2 | 21 | 511 | 10 | 502 | 0.0 | 639 |
| Msa0076580 | AT5G19320.2 | 67.748 | 493 | 157 | 2 | 21 | 511 | 10 | 502 | 0.0 | 639 |
| Msa0076580 | AT3G06000.1 | 50.543 | 184 | 78 | 2 | 331 | 514 | 16 | 186 | 2.44e-48 | 167 |
| Msa0076580 | AT1G10510.1 | 30.292 | 274 | 191 | 0 | 229 | 502 | 203 | 476 | 2.24e-25 | 110 |
| Msa0076580 | AT1G10510.1 | 30.389 | 283 | 192 | 4 | 221 | 499 | 307 | 588 | 5.01e-22 | 100 |
| Msa0076580 | AT1G10510.1 | 30.038 | 263 | 178 | 5 | 215 | 472 | 328 | 589 | 1.93e-21 | 98.6 |
| Msa0076580 | AT1G10510.1 | 25.279 | 269 | 170 | 3 | 293 | 531 | 183 | 450 | 7.87e-11 | 65.1 |
| Msa0076580 | AT1G47200.1 | 36.697 | 109 | 67 | 1 | 23 | 131 | 56 | 162 | 5.47e-15 | 73.9 |
| Msa0076580 | AT5G43070.1 | 41.111 | 90 | 51 | 1 | 22 | 111 | 39 | 126 | 7.98e-15 | 72.4 |
Find 127 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACCGTCACTGGAAATTT+TGG | 0.158218 | 1_2:+52750706 | Msa0076580:CDS |
| GCAACTTAAATCCAGGTTTC+TGG | 0.190819 | 1_2:-52750955 | None:intergenic |
| TCAGATCAACTTCACTTAAT+TGG | 0.209579 | 1_2:-52750880 | None:intergenic |
| TCCATACTTTCTAGAGAAAA+TGG | 0.228737 | 1_2:-52749682 | None:intergenic |
| GTTTCTAGGTTCTGTTGATA+TGG | 0.260007 | 1_2:+52749545 | Msa0076580:intron |
| CCTCAGTTATTTGAACTTAG+AGG | 0.267220 | 1_2:+52750643 | Msa0076580:CDS |
| CGTCTCCAGTCATGTTATTA+TGG | 0.271627 | 1_2:-52750394 | None:intergenic |
| GCTACTTCAGATTAATTTGT+AGG | 0.278186 | 1_2:+52751195 | Msa0076580:three_prime_UTR |
| CATATCTTTGTAAAAGAGTT+TGG | 0.287321 | 1_2:-52750014 | None:intergenic |
| ATGTCTATTGCAAACATAAT+TGG | 0.305651 | 1_2:-52751218 | None:intergenic |
| CAAGAGGGAAGGAGGAGAAT+GGG | 0.312236 | 1_2:+52749874 | Msa0076580:CDS |
| TTGCTCTTGCTGAAGCGCTT+GGG | 0.313724 | 1_2:+52750510 | Msa0076580:CDS |
| TGAAGGGATTGATGAGTTAA+AGG | 0.318385 | 1_2:+52751006 | Msa0076580:CDS |
| TGTTTCAGTAATAGAAGTTT+TGG | 0.325309 | 1_2:+52750035 | Msa0076580:CDS |
| TTCATCTTTCAATTCATTCT+CGG | 0.330579 | 1_2:-52750819 | None:intergenic |
| ACTTCAATAGCTTCTGCTTC+TGG | 0.333568 | 1_2:-52750149 | None:intergenic |
| ATATATGTTCTTAATATATC+TGG | 0.334642 | 1_2:+52751327 | Msa0076580:three_prime_UTR |
| GTTGCTCTTGCTGAAGCGCT+TGG | 0.338191 | 1_2:+52750509 | Msa0076580:CDS |
| CCATTCTCCTCCTTCCCTCT+TGG | 0.345911 | 1_2:-52749873 | None:intergenic |
| TCATCAACGTCCTCTCCTTC+AGG | 0.355513 | 1_2:-52751079 | None:intergenic |
| ATATCTGGCAAGACAAGAAA+TGG | 0.359192 | 1_2:+52751342 | Msa0076580:three_prime_UTR |
| TGAGATTTAAGAAGATTCAT+AGG | 0.372579 | 1_2:+52751156 | Msa0076580:exon |
| CGATTCTGATAATGATGAAT+TGG | 0.382076 | 1_2:+52751114 | Msa0076580:CDS |
| TGTGAAACGTTCCCCAGCTT+TGG | 0.391512 | 1_2:+52750442 | Msa0076580:CDS |
| AGCCCTTGCTAATGCTTTGA+AGG | 0.393810 | 1_2:+52750679 | Msa0076580:CDS |
| CCCTTCCACTGAGAAGCTTA+AGG | 0.398979 | 1_2:+52750361 | Msa0076580:CDS |
| ACCTGACATACTGGGTCCTT+TGG | 0.399840 | 1_2:+52751045 | Msa0076580:CDS |
| CCAAGAGGGAAGGAGGAGAA+TGG | 0.407320 | 1_2:+52749873 | Msa0076580:CDS |
| GGAAATAAATTGCCAGCAAA+AGG | 0.419653 | 1_2:-52751405 | None:intergenic |
| GAAGGAATCTGCACCGTCAC+TGG | 0.422448 | 1_2:+52750697 | Msa0076580:CDS |
| AAAGAGTTTGGTCCCATCAA+TGG | 0.422926 | 1_2:-52750002 | None:intergenic |
| CACCCATGGCATTATTTGAC+AGG | 0.423148 | 1_2:-52750223 | None:intergenic |
| AGAACTTCTGAAACCATTGA+TGG | 0.424052 | 1_2:+52749989 | Msa0076580:CDS |
| GAGCTTTATTTGATGAATGA+TGG | 0.428296 | 1_2:+52750299 | Msa0076580:CDS |
| ACAAATTTGATCACATGGTC+TGG | 0.437019 | 1_2:+52750905 | Msa0076580:CDS |
| TGGGGAGTTGATATCTGAAA+AGG | 0.439605 | 1_2:+52749893 | Msa0076580:CDS |
| AAATAATGCCATGGGTGAAA+AGG | 0.442002 | 1_2:+52750229 | Msa0076580:CDS |
| GCCAACTTCATTTCTGATGA+AGG | 0.446090 | 1_2:+52750989 | Msa0076580:CDS |
| CACCGAAAATCTTCCAAAGC+TGG | 0.450378 | 1_2:-52750455 | None:intergenic |
| AATAATGCCATGGGTGAAAA+GGG | 0.461364 | 1_2:+52750230 | Msa0076580:CDS |
| TGCTGTGCAAATTTATGCTA+AGG | 0.463494 | 1_2:+52749812 | Msa0076580:CDS |
| CGGTGTTCATCTACCAGAGT+AGG | 0.471423 | 1_2:+52750473 | Msa0076580:CDS |
| TCCAAAGGACCCAGTATGTC+AGG | 0.471858 | 1_2:-52751046 | None:intergenic |
| AGGTGCAGGTTTAATTAGTA+AGG | 0.472052 | 1_2:+52750841 | Msa0076580:CDS |
| ATCTTTAATTGATATTAGCA+TGG | 0.476224 | 1_2:-52750084 | None:intergenic |
| CCTTAAATCACAAAATGACT+TGG | 0.476235 | 1_2:+52750274 | Msa0076580:CDS |
| GGCCTCCAAGTCAGAGTACT+AGG | 0.483558 | 1_2:+52749616 | Msa0076580:CDS |
| ATCGAGTAAGCTTATGTTGG+AGG | 0.487701 | 1_2:+52749836 | Msa0076580:CDS |
| ACCGAAAATCTTCCAAAGCT+GGG | 0.488948 | 1_2:-52750454 | None:intergenic |
| AAATGGGCACATGGTATGAA+TGG | 0.490383 | 1_2:+52751359 | Msa0076580:three_prime_UTR |
| GAAGCTGTTGTCCAGAAACC+TGG | 0.491319 | 1_2:+52750944 | Msa0076580:CDS |
| CGGATAAATTTAACTTGGTG+AGG | 0.494899 | 1_2:-52750799 | None:intergenic |
| TGCTCTTGCTGAAGCGCTTG+GGG | 0.498032 | 1_2:+52750511 | Msa0076580:CDS |
| TAAATCACAAAATGACTTGG+AGG | 0.498668 | 1_2:+52750277 | Msa0076580:CDS |
| GAGAATGAATTGAAAGATGA+AGG | 0.503082 | 1_2:+52750821 | Msa0076580:CDS |
| CATTTCCATAATAACATGAC+TGG | 0.503127 | 1_2:+52750389 | Msa0076580:CDS |
| AACATGTTTGGTGTGGAAGC+TGG | 0.506518 | 1_2:+52750569 | Msa0076580:CDS |
| CCAACTTCATTTCTGATGAA+GGG | 0.507173 | 1_2:+52750990 | Msa0076580:CDS |
| GATTTGCGTGACAACATGTT+TGG | 0.507634 | 1_2:+52750557 | Msa0076580:CDS |
| AATTAAAGATCAACTGAAAG+AGG | 0.511896 | 1_2:+52750097 | Msa0076580:CDS |
| TCTGTAAGATCAGCAAATAC+AGG | 0.513065 | 1_2:-52750614 | None:intergenic |
| TGCGACCCAGCACTTTGAAA+AGG | 0.516523 | 1_2:+52749767 | Msa0076580:CDS |
| ATATTCAGCAACTTAAATCC+AGG | 0.517009 | 1_2:-52750962 | None:intergenic |
| GCAGAACTCCCATCACCATC+AGG | 0.519389 | 1_2:-52749792 | None:intergenic |
| ACCTTAAGCTTCTCAGTGGA+AGG | 0.523910 | 1_2:-52750362 | None:intergenic |
| GGGGAGTTGATATCTGAAAA+GGG | 0.524553 | 1_2:+52749894 | Msa0076580:CDS |
| TATATTATTGCATAGGATTG+TGG | 0.526265 | 1_2:+52748909 | Msa0076580:intron |
| TCTTTAATTGATATTAGCAT+GGG | 0.527745 | 1_2:-52750083 | None:intergenic |
| AGAAAATGGATGGAGTCGTC+AGG | 0.528738 | 1_2:-52749668 | None:intergenic |
| AACCTAGTACTCTGACTTGG+AGG | 0.528886 | 1_2:-52749618 | None:intergenic |
| ATGAATCTTCTTAAATCTCA+AGG | 0.529266 | 1_2:-52751153 | None:intergenic |
| GAAAAGGAGCCTGATGGTGA+TGG | 0.530765 | 1_2:+52749783 | Msa0076580:CDS |
| TAACAAAGATGAGGCTGAGA+AGG | 0.532357 | 1_2:+52749710 | Msa0076580:CDS |
| AACAGCTTCTGCCAACAGCT+TGG | 0.534878 | 1_2:-52750930 | None:intergenic |
| TAACCTGTCAAATAATGCCA+TGG | 0.536436 | 1_2:+52750220 | Msa0076580:CDS |
| ATTCTCGGATAAATTTAACT+TGG | 0.537197 | 1_2:-52750804 | None:intergenic |
| CCCTTCATCAGAAATGAAGT+TGG | 0.537535 | 1_2:-52750990 | None:intergenic |
| TTTGTGATTTAAGGAGTGCC+CGG | 0.539029 | 1_2:-52750265 | None:intergenic |
| TATCTGGCAAGACAAGAAAT+GGG | 0.543053 | 1_2:+52751343 | Msa0076580:three_prime_UTR |
| TCAGAGTACTAGGTTGATGT+TGG | 0.544107 | 1_2:+52749626 | Msa0076580:CDS |
| AGGTTTAATTAGTAAGGCGC+TGG | 0.544570 | 1_2:+52750847 | Msa0076580:CDS |
| AAGAGGGAAGGAGGAGAATG+GGG | 0.549859 | 1_2:+52749875 | Msa0076580:CDS |
| TCTACCAGAGTAGGCTCTGA+AGG | 0.560072 | 1_2:+52750482 | Msa0076580:CDS |
| GAAGGATGCAAAGGAAATTG+AGG | 0.561870 | 1_2:+52749728 | Msa0076580:CDS |
| AAGAGGACCAAGAGGGAAGG+AGG | 0.565309 | 1_2:+52749866 | Msa0076580:CDS |
| ATCAACCTAGTACTCTGACT+TGG | 0.566163 | 1_2:-52749621 | None:intergenic |
| GGAATCGAGTAAGCTTATGT+TGG | 0.568228 | 1_2:+52749833 | Msa0076580:CDS |
| ATTCCTTCAAAGCATTAGCA+AGG | 0.570197 | 1_2:-52750682 | None:intergenic |
| AGGAGAGGACGTTGATGAAG+AGG | 0.572691 | 1_2:+52751084 | Msa0076580:CDS |
| AGTAAGGCGCTGGAAGGTCG+TGG | 0.574225 | 1_2:+52750857 | Msa0076580:CDS |
| GAACTTCTGAAACCATTGAT+GGG | 0.575048 | 1_2:+52749990 | Msa0076580:CDS |
| TTCCTTCAAAGCATTAGCAA+GGG | 0.575261 | 1_2:-52750681 | None:intergenic |
| TACTTTCTAGAGAAAATGGA+TGG | 0.576875 | 1_2:-52749678 | None:intergenic |
| TGTTGGTTGAACGAATGGTC+AGG | 0.578571 | 1_2:+52749643 | Msa0076580:CDS |
| GTTGATGTTGGTTGAACGAA+TGG | 0.585837 | 1_2:+52749638 | Msa0076580:CDS |
| GAACACTTTCAATCAAGTTG+TGG | 0.586485 | 1_2:+52749595 | Msa0076580:CDS |
| AACCTGTCAAATAATGCCAT+GGG | 0.587490 | 1_2:+52750221 | Msa0076580:CDS |
| TCAGGATCATTCTCATCCAA+AGG | 0.589310 | 1_2:-52751061 | None:intergenic |
| ACCACCTTCAGAGCCTACTC+TGG | 0.593405 | 1_2:-52750486 | None:intergenic |
| ATGGTCTGGAGCCAAGCTGT+TGG | 0.593553 | 1_2:+52750919 | Msa0076580:CDS |
| TTAATTAGTAAGGCGCTGGA+AGG | 0.600794 | 1_2:+52750851 | Msa0076580:CDS |
| GAATTGAAAGATGAAGGTGC+AGG | 0.601464 | 1_2:+52750827 | Msa0076580:CDS |
| TAATGCCATGGGTGAAAAGG+GGG | 0.611795 | 1_2:+52750232 | Msa0076580:CDS |
| CACTTTGAAAAGGAGCCTGA+TGG | 0.614146 | 1_2:+52749777 | Msa0076580:CDS |
| AAGCACGACTCAGCAATCAA+AGG | 0.617202 | 1_2:-52751426 | None:intergenic |
| AAAAGGAGCCTGATGGTGAT+GGG | 0.618474 | 1_2:+52749784 | Msa0076580:CDS |
| GATGAATGATGGTATATCAG+AGG | 0.619244 | 1_2:+52750310 | Msa0076580:CDS |
| TGAGGCTGAGAAGGATGCAA+AGG | 0.619486 | 1_2:+52749719 | Msa0076580:CDS |
| ATATCCAAAATTTCCAGTGA+CGG | 0.620331 | 1_2:-52750710 | None:intergenic |
| GAAAAGAGGACCAAGAGGGA+AGG | 0.620402 | 1_2:+52749863 | Msa0076580:CDS |
| CAAGACAAGAAATGGGCACA+TGG | 0.624170 | 1_2:+52751350 | Msa0076580:three_prime_UTR |
| CCTTAAGCTTCTCAGTGGAA+GGG | 0.628373 | 1_2:-52750361 | None:intergenic |
| TGAGTACAAATTTGATCACA+TGG | 0.630339 | 1_2:+52750900 | Msa0076580:CDS |
| CCGAAAATCTTCCAAAGCTG+GGG | 0.630768 | 1_2:-52750453 | None:intergenic |
| TTGGATGAGAATGATCCTGA+AGG | 0.631234 | 1_2:+52751064 | Msa0076580:CDS |
| ATAATGCCATGGGTGAAAAG+GGG | 0.631439 | 1_2:+52750231 | Msa0076580:CDS |
| TGAGAATGATCCTGAAGGAG+AGG | 0.636079 | 1_2:+52751069 | Msa0076580:CDS |
| TGATTGAAAGTGTTCGATGT+TGG | 0.637029 | 1_2:-52749587 | None:intergenic |
| AATAACATGACTGGAGACGA+AGG | 0.637173 | 1_2:+52750398 | Msa0076580:CDS |
| GAATTGGAGTCAAAACTGAA+AGG | 0.640332 | 1_2:+52751130 | Msa0076580:CDS |
| TGGACTTCTTAACAAAGATG+AGG | 0.646938 | 1_2:+52749701 | Msa0076580:CDS |
| AAGAACCTTAAGCTTCTCAG+TGG | 0.653888 | 1_2:-52750366 | None:intergenic |
| CCTCTAAGTTCAAATAACTG+AGG | 0.660358 | 1_2:-52750643 | None:intergenic |
| GCGTGACAACATGTTTGGTG+TGG | 0.661175 | 1_2:+52750562 | Msa0076580:CDS |
| TATTTGAACTTAGAGGACGA+TGG | 0.662229 | 1_2:+52750650 | Msa0076580:CDS |
| ACCAGAGTAGGCTCTGAAGG+TGG | 0.671940 | 1_2:+52750485 | Msa0076580:CDS |
| AGTGTTCGATGTTGGTACGA+CGG | 0.709109 | 1_2:-52749579 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTAACATTTATTTTC+AGG | + | chr1_2:52747964-52747983 | Msa0076580:intron | 15.0% |
| !!! | TTCTTTTAAAAAAAATTACC+CGG | + | chr1_2:52748105-52748124 | Msa0076580:intron | 15.0% |
| !! | ATAATAAAGATATTTGGATA+GGG | - | chr1_2:52748468-52748487 | None:intergenic | 15.0% |
| !! | TATAATAAAGATATTTGGAT+AGG | - | chr1_2:52748469-52748488 | None:intergenic | 15.0% |
| !! | TGATGATTAAAAAAATTAGT+TGG | - | chr1_2:52748554-52748573 | None:intergenic | 15.0% |
| !!! | TTTTTCATATGGTATAATTA+TGG | + | chr1_2:52749143-52749162 | Msa0076580:intron | 15.0% |
| !!! | TTTTCATATGGTATAATTAT+GGG | + | chr1_2:52749144-52749163 | Msa0076580:intron | 15.0% |
| !!! | CATTTTAATTTTTGAAAACT+TGG | + | chr1_2:52749232-52749251 | Msa0076580:intron | 15.0% |
| !!! | GATATATTTTAACAACAATA+GGG | - | chr1_2:52749361-52749380 | None:intergenic | 15.0% |
| !!! | TTGATTTTGATTTTATACTA+TGG | + | chr1_2:52749405-52749424 | Msa0076580:intron | 15.0% |
| !! | ATATATGTTCTTAATATATC+TGG | + | chr1_2:52751327-52751346 | Msa0076580:three_prime_UTR | 15.0% |
| !! | TTCCTAAATAAACATACATT+TGG | + | chr1_2:52748060-52748079 | Msa0076580:intron | 20.0% |
| !! | TACCAAATGTATGTTTATTT+AGG | - | chr1_2:52748065-52748084 | None:intergenic | 20.0% |
| !! | ACTAAAAAACATTTCTCTTT+AGG | - | chr1_2:52748165-52748184 | None:intergenic | 20.0% |
| !! | TTGAAAATGAAAAAATGTGA+TGG | - | chr1_2:52748412-52748431 | None:intergenic | 20.0% |
| !! | CTTATACTATATTATTGCAT+AGG | + | chr1_2:52748902-52748921 | Msa0076580:intron | 20.0% |
| !!! | TGCACAAATTAATCTTTTTT+AGG | + | chr1_2:52749189-52749208 | Msa0076580:intron | 20.0% |
| !!! | GCACAAATTAATCTTTTTTA+GGG | + | chr1_2:52749190-52749209 | Msa0076580:intron | 20.0% |
| !!! | CGATATATTTTAACAACAAT+AGG | - | chr1_2:52749362-52749381 | None:intergenic | 20.0% |
| !!! | ATTAATGAATTTTCAAGAGT+AGG | + | chr1_2:52749447-52749466 | Msa0076580:intron | 20.0% |
| !!! | TTATTGTTATACTTGTTTCT+AGG | + | chr1_2:52749531-52749550 | Msa0076580:intron | 20.0% |
| !! | TCTTTAATTGATATTAGCAT+GGG | - | chr1_2:52750086-52750105 | None:intergenic | 20.0% |
| !! | ATCTTTAATTGATATTAGCA+TGG | - | chr1_2:52750087-52750106 | None:intergenic | 20.0% |
| !!! | AGATTTTTGATTTCATAACT+TGG | + | chr1_2:52751285-52751304 | Msa0076580:three_prime_UTR | 20.0% |
| !!! | TATGAATGGTAGAAATTTTT+GGG | + | chr1_2:52751373-52751392 | Msa0076580:three_prime_UTR | 20.0% |
| ! | CACATTTAGTAGTTATATAC+CGG | + | chr1_2:52747996-52748015 | Msa0076580:intron | 25.0% |
| ! | TACATTTGGTAGATAACAAT+CGG | + | chr1_2:52748074-52748093 | Msa0076580:intron | 25.0% |
| ! | TAATTATGGTTCGTCTATTT+GGG | - | chr1_2:52748244-52748263 | None:intergenic | 25.0% |
| ! | AAATAGACGAACCATAATTA+GGG | + | chr1_2:52748244-52748263 | Msa0076580:intron | 25.0% |
| ! | TTGGGATTTCAATTTCAAAA+TGG | + | chr1_2:52748337-52748356 | Msa0076580:intron | 25.0% |
| !! | AAATGAAAAAATGTGATGGA+TGG | - | chr1_2:52748408-52748427 | None:intergenic | 25.0% |
| ! | TTACTTCTACAAAGTAACTA+TGG | - | chr1_2:52748807-52748826 | None:intergenic | 25.0% |
| ! | TATATTATTGCATAGGATTG+TGG | + | chr1_2:52748909-52748928 | Msa0076580:intron | 25.0% |
| ! | TACTTAATGGGATAATACTT+TGG | + | chr1_2:52749000-52749019 | Msa0076580:intron | 25.0% |
| !!! | TGTTGTTTGATTTGAAATAC+CGG | + | chr1_2:52749033-52749052 | Msa0076580:intron | 25.0% |
| !! | TGCTTGATATGTTTTTCATA+TGG | + | chr1_2:52749132-52749151 | Msa0076580:intron | 25.0% |
| !!! | AAACTGTTTTTGACATTTCT+GGG | + | chr1_2:52749931-52749950 | Msa0076580:CDS | 25.0% |
| ! | CATATCTTTGTAAAAGAGTT+TGG | - | chr1_2:52750017-52750036 | None:intergenic | 25.0% |
| !! | TGTTTCAGTAATAGAAGTTT+TGG | + | chr1_2:52750035-52750054 | Msa0076580:CDS | 25.0% |
| ! | AATTAAAGATCAACTGAAAG+AGG | + | chr1_2:52750097-52750116 | Msa0076580:CDS | 25.0% |
| !! | ATATTTTCTTCTGCATTAGA+AGG | + | chr1_2:52750179-52750198 | Msa0076580:CDS | 25.0% |
| ! | ATTCTCGGATAAATTTAACT+TGG | - | chr1_2:52750807-52750826 | None:intergenic | 25.0% |
| ! | TTCATCTTTCAATTCATTCT+CGG | - | chr1_2:52750822-52750841 | None:intergenic | 25.0% |
| ! | ATGAATCTTCTTAAATCTCA+AGG | - | chr1_2:52751156-52751175 | None:intergenic | 25.0% |
| ! | TGAGATTTAAGAAGATTCAT+AGG | + | chr1_2:52751156-52751175 | Msa0076580:exon | 25.0% |
| ! | ATGTCTATTGCAAACATAAT+TGG | - | chr1_2:52751221-52751240 | None:intergenic | 25.0% |
| !! | GTATGAATGGTAGAAATTTT+TGG | + | chr1_2:52751372-52751391 | Msa0076580:three_prime_UTR | 25.0% |
| TTATTTAGGAAGTTATCTCC+TGG | - | chr1_2:52748051-52748070 | None:intergenic | 30.0% | |
| CTAATTATGGTTCGTCTATT+TGG | - | chr1_2:52748245-52748264 | None:intergenic | 30.0% | |
| CAAATAGACGAACCATAATT+AGG | + | chr1_2:52748243-52748262 | Msa0076580:intron | 30.0% | |
| GTCATTCATGAAGAAATACA+AGG | + | chr1_2:52748275-52748294 | Msa0076580:intron | 30.0% | |
| GGATTTCAATTTCAAAATGG+TGG | + | chr1_2:52748340-52748359 | Msa0076580:intron | 30.0% | |
| ! | ACTGCACTTTATCTTTTTCT+AGG | + | chr1_2:52748611-52748630 | Msa0076580:intron | 30.0% |
| ! | CTGCACTTTATCTTTTTCTA+GGG | + | chr1_2:52748612-52748631 | Msa0076580:intron | 30.0% |
| ! | TTCAGTTCTGTTTCAGTTTT+AGG | + | chr1_2:52748758-52748777 | Msa0076580:intron | 30.0% |
| ! | TCAGTTCTGTTTCAGTTTTA+GGG | + | chr1_2:52748759-52748778 | Msa0076580:intron | 30.0% |
| ATTATCCCATTAAGTAGAGT+GGG | - | chr1_2:52748996-52749015 | None:intergenic | 30.0% | |
| TATTATCCCATTAAGTAGAG+TGG | - | chr1_2:52748997-52749016 | None:intergenic | 30.0% | |
| GTGACTATAAATTACAGATC+CGG | - | chr1_2:52749055-52749074 | None:intergenic | 30.0% | |
| AGAGACATTGTTCAAATCAA+GGG | - | chr1_2:52749108-52749127 | None:intergenic | 30.0% | |
| ATCGCTATATATGCATATTG+TGG | + | chr1_2:52749378-52749397 | Msa0076580:intron | 30.0% | |
| ! | TACTTTCTAGAGAAAATGGA+TGG | - | chr1_2:52749681-52749700 | None:intergenic | 30.0% |
| !! | TCCATTTTCTCTAGAAAGTA+TGG | + | chr1_2:52749681-52749700 | Msa0076580:CDS | 30.0% |
| ! | TCCATACTTTCTAGAGAAAA+TGG | - | chr1_2:52749685-52749704 | None:intergenic | 30.0% |
| !!! | GAAACTGTTTTTGACATTTC+TGG | + | chr1_2:52749930-52749949 | Msa0076580:CDS | 30.0% |
| !!! | AACTGTTTTTGACATTTCTG+GGG | + | chr1_2:52749932-52749951 | Msa0076580:CDS | 30.0% |
| !!! | CAGTAATAGAAGTTTTGGTT+TGG | + | chr1_2:52750040-52750059 | Msa0076580:CDS | 30.0% |
| ! | ATCTGTCAGATTTTATTGCT+GGG | + | chr1_2:52750123-52750142 | Msa0076580:CDS | 30.0% |
| !! | CCAAGTCATTTTGTGATTTA+AGG | - | chr1_2:52750277-52750296 | None:intergenic | 30.0% |
| CCTTAAATCACAAAATGACT+TGG | + | chr1_2:52750274-52750293 | Msa0076580:CDS | 30.0% | |
| ! | TAAATCACAAAATGACTTGG+AGG | + | chr1_2:52750277-52750296 | Msa0076580:CDS | 30.0% |
| !! | GAGCTTTATTTGATGAATGA+TGG | + | chr1_2:52750299-52750318 | Msa0076580:CDS | 30.0% |
| CATTTCCATAATAACATGAC+TGG | + | chr1_2:52750389-52750408 | Msa0076580:CDS | 30.0% | |
| ATATCCAAAATTTCCAGTGA+CGG | - | chr1_2:52750713-52750732 | None:intergenic | 30.0% | |
| GAGAATGAATTGAAAGATGA+AGG | + | chr1_2:52750821-52750840 | Msa0076580:CDS | 30.0% | |
| TCAGATCAACTTCACTTAAT+TGG | - | chr1_2:52750883-52750902 | None:intergenic | 30.0% | |
| TGAGTACAAATTTGATCACA+TGG | + | chr1_2:52750900-52750919 | Msa0076580:CDS | 30.0% | |
| ATATTCAGCAACTTAAATCC+AGG | - | chr1_2:52750965-52750984 | None:intergenic | 30.0% | |
| ! | CGATTCTGATAATGATGAAT+TGG | + | chr1_2:52751114-52751133 | Msa0076580:CDS | 30.0% |
| !! | GCTACTTCAGATTAATTTGT+AGG | + | chr1_2:52751195-52751214 | Msa0076580:three_prime_UTR | 30.0% |
| AATTACCCGGATATGTACTT+AGG | + | chr1_2:52748118-52748137 | Msa0076580:intron | 35.0% | |
| ATTACCCGGATATGTACTTA+GGG | + | chr1_2:52748119-52748138 | Msa0076580:intron | 35.0% | |
| !!! | AGGCTAAAACTGTCATTTTC+TGG | + | chr1_2:52748295-52748314 | Msa0076580:intron | 35.0% |
| !!! | GGCTAAAACTGTCATTTTCT+GGG | + | chr1_2:52748296-52748315 | Msa0076580:intron | 35.0% |
| AGAGAAGAGAAAGAAAAGAG+GGG | - | chr1_2:52748701-52748720 | None:intergenic | 35.0% | |
| CAGAGAAGAGAAAGAAAAGA+GGG | - | chr1_2:52748702-52748721 | None:intergenic | 35.0% | |
| CATAGGATTGTGGTCAAATA+GGG | + | chr1_2:52748919-52748938 | Msa0076580:intron | 35.0% | |
| ! | CCAGATTTTCGATATCAAAG+CGG | - | chr1_2:52748953-52748972 | None:intergenic | 35.0% |
| GAGACATTGTTCAAATCAAG+GGG | - | chr1_2:52749107-52749126 | None:intergenic | 35.0% | |
| CAGAGACATTGTTCAAATCA+AGG | - | chr1_2:52749109-52749128 | None:intergenic | 35.0% | |
| ! | CTTGATTTGAACAATGTCTC+TGG | + | chr1_2:52749107-52749126 | Msa0076580:intron | 35.0% |
| !!! | TGAGTCTTCTGCTGTTTTTT+AGG | + | chr1_2:52749472-52749491 | Msa0076580:intron | 35.0% |
| !!! | CTGTTTTTTAGGCACTTATG+AGG | + | chr1_2:52749483-52749502 | Msa0076580:intron | 35.0% |
| ! | GTTTCTAGGTTCTGTTGATA+TGG | + | chr1_2:52749545-52749564 | Msa0076580:intron | 35.0% |
| !! | TGATTGAAAGTGTTCGATGT+TGG | - | chr1_2:52749590-52749609 | None:intergenic | 35.0% |
| ! | GAACACTTTCAATCAAGTTG+TGG | + | chr1_2:52749595-52749614 | Msa0076580:CDS | 35.0% |
| TGGACTTCTTAACAAAGATG+AGG | + | chr1_2:52749701-52749720 | Msa0076580:CDS | 35.0% | |
| TGCTGTGCAAATTTATGCTA+AGG | + | chr1_2:52749812-52749831 | Msa0076580:CDS | 35.0% | |
| !!! | ATGTTGGAGGTTTTGAAAAG+AGG | + | chr1_2:52749849-52749868 | Msa0076580:CDS | 35.0% |
| !! | TTTTGAAAAGAGGACCAAGA+GGG | + | chr1_2:52749859-52749878 | Msa0076580:CDS | 35.0% |
| !!! | ACTGTTTTTGACATTTCTGG+GGG | + | chr1_2:52749933-52749952 | Msa0076580:CDS | 35.0% |
| !! | AGAACTTCTGAAACCATTGA+TGG | + | chr1_2:52749989-52750008 | Msa0076580:CDS | 35.0% |
| !! | GAACTTCTGAAACCATTGAT+GGG | + | chr1_2:52749990-52750009 | Msa0076580:CDS | 35.0% |
| ! | GATCTGTCAGATTTTATTGC+TGG | + | chr1_2:52750122-52750141 | Msa0076580:CDS | 35.0% |
| TAACCTGTCAAATAATGCCA+TGG | + | chr1_2:52750220-52750239 | Msa0076580:CDS | 35.0% | |
| AACCTGTCAAATAATGCCAT+GGG | + | chr1_2:52750221-52750240 | Msa0076580:CDS | 35.0% | |
| AAATAATGCCATGGGTGAAA+AGG | + | chr1_2:52750229-52750248 | Msa0076580:CDS | 35.0% | |
| AATAATGCCATGGGTGAAAA+GGG | + | chr1_2:52750230-52750249 | Msa0076580:CDS | 35.0% | |
| GATGAATGATGGTATATCAG+AGG | + | chr1_2:52750310-52750329 | Msa0076580:CDS | 35.0% | |
| TCTGTAAGATCAGCAAATAC+AGG | - | chr1_2:52750617-52750636 | None:intergenic | 35.0% | |
| CCTCTAAGTTCAAATAACTG+AGG | - | chr1_2:52750646-52750665 | None:intergenic | 35.0% | |
| CCTCAGTTATTTGAACTTAG+AGG | + | chr1_2:52750643-52750662 | Msa0076580:CDS | 35.0% | |
| TATTTGAACTTAGAGGACGA+TGG | + | chr1_2:52750650-52750669 | Msa0076580:CDS | 35.0% | |
| ! | TTCCTTCAAAGCATTAGCAA+GGG | - | chr1_2:52750684-52750703 | None:intergenic | 35.0% |
| ! | ATTCCTTCAAAGCATTAGCA+AGG | - | chr1_2:52750685-52750704 | None:intergenic | 35.0% |
| ! | GTCACTGGAAATTTTGGATA+TGG | + | chr1_2:52750712-52750731 | Msa0076580:CDS | 35.0% |
| ! | TGGAAATTTTGGATATGGCT+GGG | + | chr1_2:52750717-52750736 | Msa0076580:CDS | 35.0% |
| !! | CGGATAAATTTAACTTGGTG+AGG | - | chr1_2:52750802-52750821 | None:intergenic | 35.0% |
| AGGTGCAGGTTTAATTAGTA+AGG | + | chr1_2:52750841-52750860 | Msa0076580:CDS | 35.0% | |
| ACAAATTTGATCACATGGTC+TGG | + | chr1_2:52750905-52750924 | Msa0076580:CDS | 35.0% | |
| CCAACTTCATTTCTGATGAA+GGG | + | chr1_2:52750990-52751009 | Msa0076580:CDS | 35.0% | |
| TGAAGGGATTGATGAGTTAA+AGG | + | chr1_2:52751006-52751025 | Msa0076580:CDS | 35.0% | |
| TAAAAACTCACCTGACATAC+TGG | + | chr1_2:52751036-52751055 | Msa0076580:CDS | 35.0% | |
| AAAAACTCACCTGACATACT+GGG | + | chr1_2:52751037-52751056 | Msa0076580:CDS | 35.0% | |
| GAATTGGAGTCAAAACTGAA+AGG | + | chr1_2:52751130-52751149 | Msa0076580:CDS | 35.0% | |
| ATATCTGGCAAGACAAGAAA+TGG | + | chr1_2:52751342-52751361 | Msa0076580:three_prime_UTR | 35.0% | |
| TATCTGGCAAGACAAGAAAT+GGG | + | chr1_2:52751343-52751362 | Msa0076580:three_prime_UTR | 35.0% | |
| GGAAATAAATTGCCAGCAAA+AGG | - | chr1_2:52751408-52751427 | None:intergenic | 35.0% | |
| GACAGGAAAAAATGTGCATC+CGG | - | chr1_2:52748018-52748037 | None:intergenic | 40.0% | |
| TTCCTGTCAAACAAATGTCC+AGG | + | chr1_2:52748030-52748049 | Msa0076580:intron | 40.0% | |
| TTACCCGGATATGTACTTAG+GGG | + | chr1_2:52748120-52748139 | Msa0076580:intron | 40.0% | |
| TTAGGGGGTCTAAGAGATAT+AGG | + | chr1_2:52748136-52748155 | Msa0076580:intron | 40.0% | |
| TAGGGGGTCTAAGAGATATA+GGG | + | chr1_2:52748137-52748156 | Msa0076580:intron | 40.0% | |
| ATTCTCCAAAGCCCAAGTAT+AGG | + | chr1_2:52748218-52748237 | Msa0076580:intron | 40.0% | |
| GTCTATTTGGGCCTATACTT+GGG | - | chr1_2:52748232-52748251 | None:intergenic | 40.0% | |
| GACGTCACAAACCCTAATTA+TGG | - | chr1_2:52748258-52748277 | None:intergenic | 40.0% | |
| !!! | AACTGTCATTTTCTGGGAAG+CGG | + | chr1_2:52748302-52748321 | Msa0076580:intron | 40.0% |
| GAAATTGAAATCCCAAAGCG+TGG | - | chr1_2:52748333-52748352 | None:intergenic | 40.0% | |
| ! | TGGTGGCGTTTAAAAAAAGC+TGG | + | chr1_2:52748357-52748376 | Msa0076580:intron | 40.0% |
| ! | TAGTTGGAGCCTTTTTATGC+TGG | - | chr1_2:52748538-52748557 | None:intergenic | 40.0% |
| AACGGAGAGAAGAATTGAAG+AGG | - | chr1_2:52748648-52748667 | None:intergenic | 40.0% | |
| ACCTGAGTGAGAAATGAGAA+CGG | - | chr1_2:52748666-52748685 | None:intergenic | 40.0% | |
| GCAGAGAAGAGAAAGAAAAG+AGG | - | chr1_2:52748703-52748722 | None:intergenic | 40.0% | |
| CAAAGTAACTATGGCGCTAT+GGG | - | chr1_2:52748798-52748817 | None:intergenic | 40.0% | |
| ACAAAGTAACTATGGCGCTA+TGG | - | chr1_2:52748799-52748818 | None:intergenic | 40.0% | |
| GCATAGGATTGTGGTCAAAT+AGG | + | chr1_2:52748918-52748937 | Msa0076580:intron | 40.0% | |
| CCGCTTTGATATCGAAAATC+TGG | + | chr1_2:52748950-52748969 | Msa0076580:intron | 40.0% | |
| CATTGTTCAAATCAAGGGGA+CGG | - | chr1_2:52749103-52749122 | None:intergenic | 40.0% | |
| CCTCAGATTAATCAGTCCTT+GGG | - | chr1_2:52749266-52749285 | None:intergenic | 40.0% | |
| CCAAGGACTGATTAATCTGA+GGG | + | chr1_2:52749264-52749283 | Msa0076580:intron | 40.0% | |
| CAAGGACTGATTAATCTGAG+GGG | + | chr1_2:52749265-52749284 | Msa0076580:intron | 40.0% | |
| ATCAACCTAGTACTCTGACT+TGG | - | chr1_2:52749624-52749643 | None:intergenic | 40.0% | |
| !! | TCAGAGTACTAGGTTGATGT+TGG | + | chr1_2:52749626-52749645 | Msa0076580:CDS | 40.0% |
| ! | GTTGATGTTGGTTGAACGAA+TGG | + | chr1_2:52749638-52749657 | Msa0076580:CDS | 40.0% |
| TAACAAAGATGAGGCTGAGA+AGG | + | chr1_2:52749710-52749729 | Msa0076580:CDS | 40.0% | |
| GAAGGATGCAAAGGAAATTG+AGG | + | chr1_2:52749728-52749747 | Msa0076580:CDS | 40.0% | |
| GGAATCGAGTAAGCTTATGT+TGG | + | chr1_2:52749833-52749852 | Msa0076580:CDS | 40.0% | |
| ATCGAGTAAGCTTATGTTGG+AGG | + | chr1_2:52749836-52749855 | Msa0076580:CDS | 40.0% | |
| !!! | GTTTTGAAAAGAGGACCAAG+AGG | + | chr1_2:52749858-52749877 | Msa0076580:CDS | 40.0% |
| !! | TGGGGAGTTGATATCTGAAA+AGG | + | chr1_2:52749893-52749912 | Msa0076580:CDS | 40.0% |
| !! | GGGGAGTTGATATCTGAAAA+GGG | + | chr1_2:52749894-52749913 | Msa0076580:CDS | 40.0% |
| ! | GTCGCAGAGCTTTTATTGAT+GGG | + | chr1_2:52749955-52749974 | Msa0076580:CDS | 40.0% |
| ! | TCGCAGAGCTTTTATTGATG+GGG | + | chr1_2:52749956-52749975 | Msa0076580:CDS | 40.0% |
| AAAGAGTTTGGTCCCATCAA+TGG | - | chr1_2:52750005-52750024 | None:intergenic | 40.0% | |
| ACTTCAATAGCTTCTGCTTC+TGG | - | chr1_2:52750152-52750171 | None:intergenic | 40.0% | |
| ATAATGCCATGGGTGAAAAG+GGG | + | chr1_2:52750231-52750250 | Msa0076580:CDS | 40.0% | |
| !! | TTTGTGATTTAAGGAGTGCC+CGG | - | chr1_2:52750268-52750287 | None:intergenic | 40.0% |
| AAGAACCTTAAGCTTCTCAG+TGG | - | chr1_2:52750369-52750388 | None:intergenic | 40.0% | |
| CGTCTCCAGTCATGTTATTA+TGG | - | chr1_2:52750397-52750416 | None:intergenic | 40.0% | |
| AATAACATGACTGGAGACGA+AGG | + | chr1_2:52750398-52750417 | Msa0076580:CDS | 40.0% | |
| ACCGAAAATCTTCCAAAGCT+GGG | - | chr1_2:52750457-52750476 | None:intergenic | 40.0% | |
| GATTTGCGTGACAACATGTT+TGG | + | chr1_2:52750557-52750576 | Msa0076580:CDS | 40.0% | |
| ! | CTGGAAATTTTGGATATGGC+TGG | + | chr1_2:52750716-52750735 | Msa0076580:CDS | 40.0% |
| ! | GAATTGAAAGATGAAGGTGC+AGG | + | chr1_2:52750827-52750846 | Msa0076580:CDS | 40.0% |
| AGGTTTAATTAGTAAGGCGC+TGG | + | chr1_2:52750847-52750866 | Msa0076580:CDS | 40.0% | |
| !! | TTAATTAGTAAGGCGCTGGA+AGG | + | chr1_2:52750851-52750870 | Msa0076580:CDS | 40.0% |
| GCAACTTAAATCCAGGTTTC+TGG | - | chr1_2:52750958-52750977 | None:intergenic | 40.0% | |
| GCCAACTTCATTTCTGATGA+AGG | + | chr1_2:52750989-52751008 | Msa0076580:CDS | 40.0% | |
| CCCTTCATCAGAAATGAAGT+TGG | - | chr1_2:52750993-52751012 | None:intergenic | 40.0% | |
| TCAGGATCATTCTCATCCAA+AGG | - | chr1_2:52751064-52751083 | None:intergenic | 40.0% | |
| TTGGATGAGAATGATCCTGA+AGG | + | chr1_2:52751064-52751083 | Msa0076580:CDS | 40.0% | |
| AAATGGGCACATGGTATGAA+TGG | + | chr1_2:52751359-52751378 | Msa0076580:three_prime_UTR | 40.0% | |
| CTCCTGGACATTTGTTTGAC+AGG | - | chr1_2:52748035-52748054 | None:intergenic | 45.0% | |
| TACCCGGATATGTACTTAGG+GGG | + | chr1_2:52748121-52748140 | Msa0076580:intron | 45.0% | |
| AGACCCCCTAAGTACATATC+CGG | - | chr1_2:52748127-52748146 | None:intergenic | 45.0% | |
| AGGGGGTCTAAGAGATATAG+GGG | + | chr1_2:52748138-52748157 | Msa0076580:intron | 45.0% | |
| CGTCTATTTGGGCCTATACT+TGG | - | chr1_2:52748233-52748252 | None:intergenic | 45.0% | |
| AAGCGGAAAATCCACGCTTT+GGG | + | chr1_2:52748319-52748338 | Msa0076580:intron | 45.0% | |
| TAAAGCGTGCGTGGAAAAAC+TGG | - | chr1_2:52748445-52748464 | None:intergenic | 45.0% | |
| TCCGTTCTCATTTCTCACTC+AGG | + | chr1_2:52748662-52748681 | Msa0076580:intron | 45.0% | |
| ATTGCGCCCACTCTACTTAA+TGG | + | chr1_2:52748987-52749006 | Msa0076580:intron | 45.0% | |
| TTGCGCCCACTCTACTTAAT+GGG | + | chr1_2:52748988-52749007 | Msa0076580:intron | 45.0% | |
| AAACTTGGTATCCAGTCCCA+AGG | + | chr1_2:52749247-52749266 | Msa0076580:intron | 45.0% | |
| GATTAATCAGTCCTTGGGAC+TGG | - | chr1_2:52749261-52749280 | None:intergenic | 45.0% | |
| CCCAAGGACTGATTAATCTG+AGG | + | chr1_2:52749263-52749282 | Msa0076580:intron | 45.0% | |
| CCCTCAGATTAATCAGTCCT+TGG | - | chr1_2:52749267-52749286 | None:intergenic | 45.0% | |
| TCAAATGGGACAACCACAAG+TGG | - | chr1_2:52749305-52749324 | None:intergenic | 45.0% | |
| ! | CTCTTGCTCTGGCTTCAAAT+GGG | - | chr1_2:52749319-52749338 | None:intergenic | 45.0% |
| AGTGTTCGATGTTGGTACGA+CGG | - | chr1_2:52749582-52749601 | None:intergenic | 45.0% | |
| !! | AACCTAGTACTCTGACTTGG+AGG | - | chr1_2:52749621-52749640 | None:intergenic | 45.0% |
| ! | TGTTGGTTGAACGAATGGTC+AGG | + | chr1_2:52749643-52749662 | Msa0076580:CDS | 45.0% |
| AGAAAATGGATGGAGTCGTC+AGG | - | chr1_2:52749671-52749690 | None:intergenic | 45.0% | |
| !! | AGGCTCCTTTTCAAAGTGCT+GGG | - | chr1_2:52749775-52749794 | None:intergenic | 45.0% |
| ! | CACTTTGAAAAGGAGCCTGA+TGG | + | chr1_2:52749777-52749796 | Msa0076580:CDS | 45.0% |
| ! | AAAAGGAGCCTGATGGTGAT+GGG | + | chr1_2:52749784-52749803 | Msa0076580:CDS | 45.0% |
| ! | GGTCGCAGAGCTTTTATTGA+TGG | + | chr1_2:52749954-52749973 | Msa0076580:CDS | 45.0% |
| ! | CAGAGCTTTTATTGATGGGG+AGG | + | chr1_2:52749959-52749978 | Msa0076580:CDS | 45.0% |
| CACCCATGGCATTATTTGAC+AGG | - | chr1_2:52750226-52750245 | None:intergenic | 45.0% | |
| TAATGCCATGGGTGAAAAGG+GGG | + | chr1_2:52750232-52750251 | Msa0076580:CDS | 45.0% | |
| ! | AAAAGGGGGTTAGAGCATTC+CGG | + | chr1_2:52750246-52750265 | Msa0076580:CDS | 45.0% |
| CCTTAAGCTTCTCAGTGGAA+GGG | - | chr1_2:52750364-52750383 | None:intergenic | 45.0% | |
| ACCTTAAGCTTCTCAGTGGA+AGG | - | chr1_2:52750365-52750384 | None:intergenic | 45.0% | |
| CCGAAAATCTTCCAAAGCTG+GGG | - | chr1_2:52750456-52750475 | None:intergenic | 45.0% | |
| !!! | CCCCAGCTTTGGAAGATTTT+CGG | + | chr1_2:52750453-52750472 | Msa0076580:CDS | 45.0% |
| CACCGAAAATCTTCCAAAGC+TGG | - | chr1_2:52750458-52750477 | None:intergenic | 45.0% | |
| !! | AACATGTTTGGTGTGGAAGC+TGG | + | chr1_2:52750569-52750588 | Msa0076580:CDS | 45.0% |
| AGCCCTTGCTAATGCTTTGA+AGG | + | chr1_2:52750679-52750698 | Msa0076580:CDS | 45.0% | |
| ! | TGCACCGTCACTGGAAATTT+TGG | + | chr1_2:52750706-52750725 | Msa0076580:CDS | 45.0% |
| TGAGAATGATCCTGAAGGAG+AGG | + | chr1_2:52751069-52751088 | Msa0076580:CDS | 45.0% | |
| CAAGACAAGAAATGGGCACA+TGG | + | chr1_2:52751350-52751369 | Msa0076580:three_prime_UTR | 45.0% | |
| !! | AAAAATATAATAAAGATATT+TGG | - | chr1_2:52748474-52748493 | None:intergenic | 5.0% |
| GACCCCCTAAGTACATATCC+GGG | - | chr1_2:52748126-52748145 | None:intergenic | 50.0% | |
| GGGGGTCTAAGAGATATAGG+GGG | + | chr1_2:52748139-52748158 | Msa0076580:intron | 50.0% | |
| TTGGGCCTATACTTGGGCTT+TGG | - | chr1_2:52748226-52748245 | None:intergenic | 50.0% | |
| GAAGCGGAAAATCCACGCTT+TGG | + | chr1_2:52748318-52748337 | Msa0076580:intron | 50.0% | |
| TTCCCCGCTCCAGCATAAAA+AGG | + | chr1_2:52748526-52748545 | Msa0076580:intron | 50.0% | |
| ! | AGCCTTTTTATGCTGGAGCG+GGG | - | chr1_2:52748531-52748550 | None:intergenic | 50.0% |
| ! | GAGCCTTTTTATGCTGGAGC+GGG | - | chr1_2:52748532-52748551 | None:intergenic | 50.0% |
| ! | GGAGCCTTTTTATGCTGGAG+CGG | - | chr1_2:52748533-52748552 | None:intergenic | 50.0% |
| GACAACCACAAGTGGACAGT+GGG | - | chr1_2:52749297-52749316 | None:intergenic | 50.0% | |
| ! | GCTCTTGCTCTGGCTTCAAA+TGG | - | chr1_2:52749320-52749339 | None:intergenic | 50.0% |
| ACAGAGCTTTGCTCTTGCTC+TGG | - | chr1_2:52749330-52749349 | None:intergenic | 50.0% | |
| TGAGGCTGAGAAGGATGCAA+AGG | + | chr1_2:52749719-52749738 | Msa0076580:CDS | 50.0% | |
| ! | TGCGACCCAGCACTTTGAAA+AGG | + | chr1_2:52749767-52749786 | Msa0076580:CDS | 50.0% |
| ! | CAGGCTCCTTTTCAAAGTGC+TGG | - | chr1_2:52749776-52749795 | None:intergenic | 50.0% |
| ! | GAAAAGGAGCCTGATGGTGA+TGG | + | chr1_2:52749783-52749802 | Msa0076580:CDS | 50.0% |
| GAAAAGAGGACCAAGAGGGA+AGG | + | chr1_2:52749863-52749882 | Msa0076580:CDS | 50.0% | |
| CAAGAGGGAAGGAGGAGAAT+GGG | + | chr1_2:52749874-52749893 | Msa0076580:CDS | 50.0% | |
| AAGAGGGAAGGAGGAGAATG+GGG | + | chr1_2:52749875-52749894 | Msa0076580:CDS | 50.0% | |
| ! | TCTAACCCCCTTTTCACCCA+TGG | - | chr1_2:52750240-52750259 | None:intergenic | 50.0% |
| ! | AAAGGGGGTTAGAGCATTCC+GGG | + | chr1_2:52750247-52750266 | Msa0076580:CDS | 50.0% |
| CCCTTCCACTGAGAAGCTTA+AGG | + | chr1_2:52750361-52750380 | Msa0076580:CDS | 50.0% | |
| TGTGAAACGTTCCCCAGCTT+TGG | + | chr1_2:52750442-52750461 | Msa0076580:CDS | 50.0% | |
| CGGTGTTCATCTACCAGAGT+AGG | + | chr1_2:52750473-52750492 | Msa0076580:CDS | 50.0% | |
| ! | TCTACCAGAGTAGGCTCTGA+AGG | + | chr1_2:52750482-52750501 | Msa0076580:CDS | 50.0% |
| ! | TTGCTCTTGCTGAAGCGCTT+GGG | + | chr1_2:52750510-52750529 | Msa0076580:CDS | 50.0% |
| ! | GCGTGACAACATGTTTGGTG+TGG | + | chr1_2:52750562-52750581 | Msa0076580:CDS | 50.0% |
| AACAGCTTCTGCCAACAGCT+TGG | - | chr1_2:52750933-52750952 | None:intergenic | 50.0% | |
| GAAGCTGTTGTCCAGAAACC+TGG | + | chr1_2:52750944-52750963 | Msa0076580:CDS | 50.0% | |
| ACCTGACATACTGGGTCCTT+TGG | + | chr1_2:52751045-52751064 | Msa0076580:CDS | 50.0% | |
| TCCAAAGGACCCAGTATGTC+AGG | - | chr1_2:52751049-52751068 | None:intergenic | 50.0% | |
| TCATCAACGTCCTCTCCTTC+AGG | - | chr1_2:52751082-52751101 | None:intergenic | 50.0% | |
| ! | AGGAGAGGACGTTGATGAAG+AGG | + | chr1_2:52751084-52751103 | Msa0076580:CDS | 50.0% |
| ! | GGGCTTATTGTGCCTTTTGC+TGG | + | chr1_2:52751393-52751412 | Msa0076580:three_prime_UTR | 50.0% |
| GCGTGCGTGGAAAAACTGGA+GGG | - | chr1_2:52748441-52748460 | None:intergenic | 55.0% | |
| AGCGTGCGTGGAAAAACTGG+AGG | - | chr1_2:52748442-52748461 | None:intergenic | 55.0% | |
| TGGATAGGGTAAAGCGTGCG+TGG | - | chr1_2:52748454-52748473 | None:intergenic | 55.0% | |
| CCACAAGTGGACAGTGGGAT+TGG | - | chr1_2:52749292-52749311 | None:intergenic | 55.0% | |
| CCAATCCCACTGTCCACTTG+TGG | + | chr1_2:52749289-52749308 | Msa0076580:intron | 55.0% | |
| GGACAACCACAAGTGGACAG+TGG | - | chr1_2:52749298-52749317 | None:intergenic | 55.0% | |
| ! | GGCCTCCAAGTCAGAGTACT+AGG | + | chr1_2:52749616-52749635 | Msa0076580:CDS | 55.0% |
| GCAGAACTCCCATCACCATC+AGG | - | chr1_2:52749795-52749814 | None:intergenic | 55.0% | |
| AAGAGGACCAAGAGGGAAGG+AGG | + | chr1_2:52749866-52749885 | Msa0076580:CDS | 55.0% | |
| CCATTCTCCTCCTTCCCTCT+TGG | - | chr1_2:52749876-52749895 | None:intergenic | 55.0% | |
| CCAAGAGGGAAGGAGGAGAA+TGG | + | chr1_2:52749873-52749892 | Msa0076580:CDS | 55.0% | |
| !! | ACCAGAGTAGGCTCTGAAGG+TGG | + | chr1_2:52750485-52750504 | Msa0076580:CDS | 55.0% |
| ACCACCTTCAGAGCCTACTC+TGG | - | chr1_2:52750489-52750508 | None:intergenic | 55.0% | |
| ! | GTTGCTCTTGCTGAAGCGCT+TGG | + | chr1_2:52750509-52750528 | Msa0076580:CDS | 55.0% |
| ! | TGCTCTTGCTGAAGCGCTTG+GGG | + | chr1_2:52750511-52750530 | Msa0076580:CDS | 55.0% |
| GAAGGAATCTGCACCGTCAC+TGG | + | chr1_2:52750697-52750716 | Msa0076580:CDS | 55.0% | |
| ! | ATGGTCTGGAGCCAAGCTGT+TGG | + | chr1_2:52750919-52750938 | Msa0076580:CDS | 55.0% |
| !! | AGTAAGGCGCTGGAAGGTCG+TGG | + | chr1_2:52750857-52750876 | Msa0076580:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52747934 | 52751443 | 52747934 | ID=Msa0076580;Name=Msa0076580 |
| chr1_2 | mRNA | 52747934 | 52751443 | 52747934 | ID=Msa0076580-mRNA-1;Parent=Msa0076580;Name=Msa0076580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0.25|0.25|1|1|4|278|543 |
| chr1_2 | exon | 52747934 | 52747938 | 52747934 | ID=Msa0076580-mRNA-1:exon:16254;Parent=Msa0076580-mRNA-1 |
| chr1_2 | exon | 52748774 | 52748780 | 52748774 | ID=Msa0076580-mRNA-1:exon:16255;Parent=Msa0076580-mRNA-1 |
| chr1_2 | exon | 52748924 | 52748930 | 52748924 | ID=Msa0076580-mRNA-1:exon:16256;Parent=Msa0076580-mRNA-1 |
| chr1_2 | exon | 52749553 | 52751443 | 52749553 | ID=Msa0076580-mRNA-1:exon:16257;Parent=Msa0076580-mRNA-1 |
| chr1_2 | CDS | 52747934 | 52747938 | 52747934 | ID=Msa0076580-mRNA-1:cds;Parent=Msa0076580-mRNA-1 |
| chr1_2 | CDS | 52748774 | 52748780 | 52748774 | ID=Msa0076580-mRNA-1:cds;Parent=Msa0076580-mRNA-1 |
| chr1_2 | CDS | 52748924 | 52748930 | 52748924 | ID=Msa0076580-mRNA-1:cds;Parent=Msa0076580-mRNA-1 |
| chr1_2 | CDS | 52749553 | 52751165 | 52749553 | ID=Msa0076580-mRNA-1:cds;Parent=Msa0076580-mRNA-1 |
| chr1_2 | three_prime_UTR | 52751166 | 52751443 | 52751166 | ID=Msa0076580-mRNA-1:three_prime_utr;Parent=Msa0076580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
