AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0593700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593700 MtrunA17_Chr4g0011831 99.167 240 2 0 1 240 1 240 1.63e-176 484
Msa0593700 MtrunA17_Chr4g0001201 36.564 227 123 5 20 240 2 213 8.45e-42 141
Msa0593700 MtrunA17_Chr2g0333751 36.481 233 127 6 14 240 6 223 2.32e-41 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0593700 AT2G45200.1 87.288 236 30 0 5 240 4 239 4.72e-154 427
Msa0593700 AT2G45200.2 81.102 254 30 1 5 240 4 257 1.54e-149 417
Msa0593700 AT1G15880.1 36.087 230 135 4 12 240 5 223 3.89e-41 140

Find 78 sgRNAs with CRISPR-Local

Find 466 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTTTCTCATCATTTAT+TGG 0.113073 4_2:+20043659 Msa0593700:CDS
GGATGATATTTCGGACTTTA+AGG 0.169196 4_2:+20042289 Msa0593700:CDS
CAATAACTGCTGACAGAATA+AGG 0.238804 4_2:-20043627 None:intergenic
CAAGGAAAAGTGAGGCTTCT+TGG 0.277079 4_2:+20043444 Msa0593700:CDS
ACCGAGCAAGCTACGAATAA+TGG 0.289236 4_2:-20043478 None:intergenic
TTCTGTTAGGGATGATATTT+CGG 0.292259 4_2:+20042280 Msa0593700:CDS
AAGGAAAAGTGAGGCTTCTT+GGG 0.331136 4_2:+20043445 Msa0593700:CDS
AATCTAGATTTGCAGGAATC+AGG 0.351249 4_2:+20038144 Msa0593700:CDS
CCGAGCAAGCTACGAATAAT+GGG 0.354967 4_2:-20043477 None:intergenic
GTTGTTTGCTTCAGGAGTTC+AGG 0.357787 4_2:+20042207 Msa0593700:intron
AACACAAAAGTAGTGAATTA+TGG 0.363454 4_2:+20043709 Msa0593700:three_prime_UTR
ATCCTTGCTCGAGAAACTAT+TGG 0.377748 4_2:+20040969 Msa0593700:CDS
CACGACAAATCTAGATTTGC+AGG 0.397417 4_2:+20038137 Msa0593700:CDS
TGTCCCACAAATTTCTGTTT+CGG 0.400618 4_2:+20038030 Msa0593700:five_prime_UTR
CTGTTGGGTCCAGTAGGTCT+TGG 0.402163 4_2:+20040923 Msa0593700:CDS
CCTCTTGTTATTAGGTTATG+TGG 0.405067 4_2:+20040885 Msa0593700:intron
TCAAGCTACAAGAGCTGTCT+TGG 0.408027 4_2:+20043392 Msa0593700:CDS
AACTTCTTCTAGCAGGCATC+TGG 0.415831 4_2:+20042374 Msa0593700:intron
GGTTCTCAGAGGGCATTGTT+TGG 0.419536 4_2:+20043414 Msa0593700:CDS
CATGGACTTCCAAGACCTAC+TGG 0.433265 4_2:-20040932 None:intergenic
GTCTTGGAAGTCCATGGAAA+TGG 0.434001 4_2:+20040939 Msa0593700:CDS
CATTGAGTTTATGTTCCCCT+TGG 0.435788 4_2:-20042234 None:intergenic
GATTTGTCGTGTCCCTCATT+CGG 0.452239 4_2:-20038125 None:intergenic
ACACCGAAACAGAAATTTGT+GGG 0.456286 4_2:-20038033 None:intergenic
AGTAGATGTGCTGCATCTGC+TGG 0.459514 4_2:+20041009 Msa0593700:CDS
CCCATTATTCGTAGCTTGCT+CGG 0.465386 4_2:+20043477 Msa0593700:CDS
TACTTCTGTAACACAGAAGT+TGG 0.472524 4_2:+20041038 Msa0593700:CDS
ATAGTTTCTCGAGCAAGGAT+TGG 0.479613 4_2:-20040966 None:intergenic
GATGGTGGCTCACCATCTGT+TGG 0.482816 4_2:+20040907 Msa0593700:CDS
GGATTGGATTTCCATTTCCA+TGG 0.485603 4_2:-20040950 None:intergenic
CGATAAGAAGGCGAAAATCA+AGG 0.488091 4_2:+20043599 Msa0593700:CDS
ATCAACTAAACACAAATATG+AGG 0.491323 4_2:-20043834 None:intergenic
AGATTTGCAGGAATCAGGTT+GGG 0.492544 4_2:+20038149 Msa0593700:CDS
AATAACTGCTGACAGAATAA+GGG 0.496188 4_2:-20043626 None:intergenic
CAAAATACAACAACCGAATG+AGG 0.496330 4_2:+20038112 Msa0593700:exon
TCACGTAATAACTGCATCCT+TGG 0.499294 4_2:-20042407 None:intergenic
GTCCAATAGTTTCTCGAGCA+AGG 0.499653 4_2:-20040971 None:intergenic
CAAGCTACAAGAGCTGTCTT+GGG 0.501409 4_2:+20043393 Msa0593700:CDS
GCATTGTTTGGCGATGTTCA+AGG 0.518710 4_2:+20043426 Msa0593700:CDS
CGTGAGAGAGCCTCCATCCA+TGG 0.523033 4_2:+20042425 Msa0593700:CDS
CTTTCTTCTTACGCTAAACT+CGG 0.523733 4_2:+20038222 Msa0593700:CDS
TTTACAATCCACATTTGCCT+AGG 0.525432 4_2:+20043809 Msa0593700:three_prime_UTR
TTGTTATTAGGTTATGTGGA+TGG 0.526319 4_2:+20040889 Msa0593700:intron
ATGGTGGCTCACCATCTGTT+GGG 0.536398 4_2:+20040908 Msa0593700:CDS
TTCTGTGTTACAGAAGTAGC+TGG 0.537855 4_2:-20041033 None:intergenic
CAGTAGGTCTTGGAAGTCCA+TGG 0.539641 4_2:+20040933 Msa0593700:CDS
ATGAGGCTCCTAGGCAAATG+TGG 0.550935 4_2:-20043817 None:intergenic
AGCTGTCTTGGGTTCTCAGA+GGG 0.552364 4_2:+20043404 Msa0593700:CDS
AACACAAATATGAGGCTCCT+AGG 0.552468 4_2:-20043826 None:intergenic
TAGATTTGCAGGAATCAGGT+TGG 0.553621 4_2:+20038148 Msa0593700:CDS
CACCATCTGTTGGGTCCAGT+AGG 0.560246 4_2:+20040917 Msa0593700:CDS
GATAAGAAGGCGAAAATCAA+GGG 0.563741 4_2:+20043600 Msa0593700:CDS
TACACCGAAACAGAAATTTG+TGG 0.565796 4_2:-20038034 None:intergenic
GGGGAACATAAACTCAATGA+AGG 0.567757 4_2:+20042238 Msa0593700:CDS
TTACATGAGACGTACTTCCA+TGG 0.570002 4_2:-20042442 None:intergenic
CTGTAACACAGAAGTTGGCT+AGG 0.573524 4_2:+20041043 Msa0593700:CDS
AGGTTGGGAGGAACTTCGTA+AGG 0.582246 4_2:+20038164 Msa0593700:CDS
CAGGAGTTCAGGCGTACCAA+GGG 0.582622 4_2:+20042218 Msa0593700:intron
TCAGGAGTTCAGGCGTACCA+AGG 0.584470 4_2:+20042217 Msa0593700:intron
TTATTAGGTTATGTGGATGG+TGG 0.585061 4_2:+20040892 Msa0593700:intron
AGGAAAAGTGAGGCTTCTTG+GGG 0.588008 4_2:+20043446 Msa0593700:CDS
ATGAGACGTACTTCCATGGA+TGG 0.591355 4_2:-20042438 None:intergenic
CTCGGTGCTAGATTCACTCA+AGG 0.599442 4_2:+20038240 Msa0593700:CDS
AGATGCAGCACATCTACTCA+TGG 0.603446 4_2:-20041004 None:intergenic
AAGGAAGCGCGTAAGATCGA+AGG 0.606205 4_2:+20038183 Msa0593700:CDS
GACCTACTGGACCCAACAGA+TGG 0.606510 4_2:-20040919 None:intergenic
TATTCTTCATGAGTTTACCC+AGG 0.621068 4_2:+20041074 Msa0593700:CDS
AAAATACAACAACCGAATGA+GGG 0.624338 4_2:+20038113 Msa0593700:exon
TGCGCAGAGTAAAGAGAGTG+TGG 0.627327 4_2:-20038076 None:intergenic
TTTGCAGGAATCAGGTTGGG+AGG 0.632784 4_2:+20038152 Msa0593700:CDS
CCAATAAATGATGAGAAACA+AGG 0.636384 4_2:-20043659 None:intergenic
GAGCTGTCTTGGGTTCTCAG+AGG 0.646743 4_2:+20043403 Msa0593700:CDS
AGACGTACTTCCATGGATGG+AGG 0.668866 4_2:-20042435 None:intergenic
GCGATGTTCAAGGAAAAGTG+AGG 0.672498 4_2:+20043436 Msa0593700:CDS
AGGAGTTCAGGCGTACCAAG+GGG 0.707609 4_2:+20042219 Msa0593700:intron
CGAGCAAGCTACGAATAATG+GGG 0.708413 4_2:-20043476 None:intergenic
GGTGCTAGATTCACTCAAGG+AGG 0.719729 4_2:+20038243 Msa0593700:CDS
CATCTGGTAGTATGTCACCA+AGG 0.721954 4_2:+20042390 Msa0593700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAAATTATTCAATG+CGG - chr4_2:20040374-20040393 None:intergenic 10.0%
!! AAAATATCATTGATATTTAA+AGG - chr4_2:20040498-20040517 None:intergenic 10.0%
!!! ATAAACTAATTTTTTACATT+TGG + chr4_2:20040563-20040582 Msa0593700:intron 10.0%
!!! TAAACTAATTTTTTACATTT+GGG + chr4_2:20040564-20040583 Msa0593700:intron 10.0%
!!! ATTTTATATTAAAATTGTGT+TGG + chr4_2:20040728-20040747 Msa0593700:intron 10.0%
!!! TTTTATATTAAAATTGTGTT+GGG + chr4_2:20040729-20040748 Msa0593700:intron 10.0%
!!! TCTTTTTTTTTTTTTTAAAC+TGG - chr4_2:20041153-20041172 None:intergenic 10.0%
!! AAAAAAAAAAAAAGAATTTC+TGG + chr4_2:20041158-20041177 Msa0593700:intron 10.0%
!! AAAAAAAAAAAAGAATTTCT+GGG + chr4_2:20041159-20041178 Msa0593700:intron 10.0%
!!! AGATACTTTAAAATATAAAA+AGG + chr4_2:20041824-20041843 Msa0593700:intron 10.0%
!!! GATACTTTAAAATATAAAAA+GGG + chr4_2:20041825-20041844 Msa0593700:intron 10.0%
!!! ATACTTTAAAATATAAAAAG+GGG + chr4_2:20041826-20041845 Msa0593700:intron 10.0%
!!! TTATATAAATATTTTCTTAC+AGG + chr4_2:20042339-20042358 Msa0593700:intron 10.0%
!! ATAAAAGTAATTTCAAAATT+TGG - chr4_2:20042997-20043016 None:intergenic 10.0%
!! AATATAAATTTGAAAATCAA+TGG - chr4_2:20043537-20043556 None:intergenic 10.0%
!!! ATTTTCAAATTTATATTTCA+TGG + chr4_2:20043540-20043559 Msa0593700:intron 10.0%
!! ATTGAATCTGAATAAATAAA+AGG + chr4_2:20038703-20038722 Msa0593700:intron 15.0%
!! TTGAATCTGAATAAATAAAA+GGG + chr4_2:20038704-20038723 Msa0593700:intron 15.0%
!! TAAAGTTATTTATTTACGTT+AGG - chr4_2:20039758-20039777 None:intergenic 15.0%
!! TTAAAAAAATTATTCAATGC+GGG - chr4_2:20040373-20040392 None:intergenic 15.0%
!! AAAAAATAGAACAAAACAAA+AGG - chr4_2:20041590-20041609 None:intergenic 15.0%
!!! TACTTTAAAATATAAAAAGG+GGG + chr4_2:20041827-20041846 Msa0593700:intron 15.0%
!! TTAATTCTAATTTCTTATGT+AGG + chr4_2:20042065-20042084 Msa0593700:intron 15.0%
!! AACTCATTAATATTGAAAAA+CGG - chr4_2:20042586-20042605 None:intergenic 15.0%
!!! TTTTTCAATATTAATGAGTT+GGG + chr4_2:20042586-20042605 Msa0593700:intron 15.0%
!!! AATTGTAAATTCTTTTTGGA+AGG - chr4_2:20038001-20038020 None:intergenic 20.0%
!!! CTCTAATTGTAAATTCTTTT+TGG - chr4_2:20038005-20038024 None:intergenic 20.0%
!! TAAATGAATTAGTGTTTGTT+TGG + chr4_2:20038509-20038528 Msa0593700:intron 20.0%
!! TAGATGTATTTATGTAAAAG+TGG + chr4_2:20038752-20038771 Msa0593700:intron 20.0%
!! TGGATTTAGCAATAAATTTA+AGG + chr4_2:20038772-20038791 Msa0593700:intron 20.0%
!! GGATTTAGCAATAAATTTAA+GGG + chr4_2:20038773-20038792 Msa0593700:intron 20.0%
!!! AGAATTGATTTTATCATGTT+TGG - chr4_2:20038887-20038906 None:intergenic 20.0%
!! ATCTAATGTGCTAAAATTTA+GGG - chr4_2:20039277-20039296 None:intergenic 20.0%
!! AATCTAATGTGCTAAAATTT+AGG - chr4_2:20039278-20039297 None:intergenic 20.0%
!!! TTATTTTTCAACTCACTTTT+AGG + chr4_2:20039723-20039742 Msa0593700:intron 20.0%
!!! TTATACATAACATTTGCTTT+TGG + chr4_2:20040140-20040159 Msa0593700:intron 20.0%
!! TAAAAAAATTATTCAATGCG+GGG - chr4_2:20040372-20040391 None:intergenic 20.0%
!! CATAGAAAATATCGTATTAA+TGG - chr4_2:20041679-20041698 None:intergenic 20.0%
!! TTATCATACACGTATAATAT+TGG + chr4_2:20041712-20041731 Msa0593700:intron 20.0%
!! TATAATATTGGACACAAATA+AGG + chr4_2:20041724-20041743 Msa0593700:intron 20.0%
!! ATAATATTGGACACAAATAA+GGG + chr4_2:20041725-20041744 Msa0593700:intron 20.0%
!!! ATTTTACATAACAGTAGAAA+AGG - chr4_2:20042044-20042063 None:intergenic 20.0%
!! CTTACATTACTGTAATAAAT+TGG + chr4_2:20042120-20042139 Msa0593700:intron 20.0%
!!! GTTTTTCAATATTAATGAGT+TGG + chr4_2:20042585-20042604 Msa0593700:intron 20.0%
!!! ATTGTCAATTACTAATGTTT+TGG + chr4_2:20042629-20042648 Msa0593700:intron 20.0%
!!! TTACTCTAAAATTACACTAA+TGG + chr4_2:20042710-20042729 Msa0593700:intron 20.0%
!! TCTTGATTTCTCAAAATAAA+TGG - chr4_2:20042742-20042761 None:intergenic 20.0%
!!! ATTTATTTTGAGAAATCAAG+AGG + chr4_2:20042741-20042760 Msa0593700:intron 20.0%
!! AGCTATATGACATTAATAAT+GGG - chr4_2:20042774-20042793 None:intergenic 20.0%
!! TAGCTATATGACATTAATAA+TGG - chr4_2:20042775-20042794 None:intergenic 20.0%
!! ATTATTAATGTCATATAGCT+AGG + chr4_2:20042774-20042793 Msa0593700:intron 20.0%
!!! TGTCTTTTAAATCAATTCTA+AGG + chr4_2:20042854-20042873 Msa0593700:intron 20.0%
!! TCAAAATTTGGAAGAATAAA+TGG - chr4_2:20042985-20043004 None:intergenic 20.0%
!! TACTAGTATATCAAATTCTT+AGG + chr4_2:20043118-20043137 Msa0593700:intron 20.0%
!! ACTAGTATATCAAATTCTTA+GGG + chr4_2:20043119-20043138 Msa0593700:intron 20.0%
!!! TCTTTAAAACTAAATCTTAC+TGG - chr4_2:20043213-20043232 None:intergenic 20.0%
!!! TCTTTGACTATTTACTTTTT+AGG + chr4_2:20043764-20043783 Msa0593700:three_prime_UTR 20.0%
!!! CTTTGACTATTTACTTTTTA+GGG + chr4_2:20043765-20043784 Msa0593700:three_prime_UTR 20.0%
!! TGATTTTCTCAAATTATCAG+CGG + chr4_2:20038619-20038638 Msa0593700:intron 25.0%
!!! CATATGTTTGGTTTCAATTT+TGG - chr4_2:20038937-20038956 None:intergenic 25.0%
! CAAAATTGAAACCAAACATA+TGG + chr4_2:20038935-20038954 Msa0593700:intron 25.0%
! CATTCAATTAACCATATGTT+TGG - chr4_2:20038949-20038968 None:intergenic 25.0%
!!! GTAATGATCTACGTTATTTT+CGG - chr4_2:20039209-20039228 None:intergenic 25.0%
! AATAACGTAGATCATTACAT+TGG + chr4_2:20039211-20039230 Msa0593700:intron 25.0%
! TCTCACATTTAATGAAAAAG+TGG - chr4_2:20039339-20039358 None:intergenic 25.0%
! CAAATATATTGTTCTGCATT+TGG - chr4_2:20039608-20039627 None:intergenic 25.0%
! TCAAAATAGAATCAATTTGG+AGG - chr4_2:20039657-20039676 None:intergenic 25.0%
! TCGTCAAAATAGAATCAATT+TGG - chr4_2:20039660-20039679 None:intergenic 25.0%
!!! ATTGATTCTATTTTGACGAT+AGG + chr4_2:20039661-20039680 Msa0593700:intron 25.0%
!!! CTAATTTTTTACATTTGGGA+CGG + chr4_2:20040568-20040587 Msa0593700:intron 25.0%
!!! TAATTTTTTACATTTGGGAC+GGG + chr4_2:20040569-20040588 Msa0593700:intron 25.0%
! AAAATTGTGTTGGGATAATA+TGG + chr4_2:20040738-20040757 Msa0593700:intron 25.0%
! CGATAGAATTTCATCATTAT+TGG - chr4_2:20040831-20040850 None:intergenic 25.0%
! TTGGGTTTGAATTTAAGAAT+AGG + chr4_2:20041257-20041276 Msa0593700:intron 25.0%
! CTTTGTATTATGGAAATCAT+GGG + chr4_2:20041392-20041411 Msa0593700:intron 25.0%
!! AATACGATATTTTCTATGCT+CGG + chr4_2:20041681-20041700 Msa0593700:intron 25.0%
!! TTTAAAATATAAAAAGGGGG+AGG + chr4_2:20041830-20041849 Msa0593700:intron 25.0%
! ATGAAACACAAAGTTCAATT+TGG - chr4_2:20041945-20041964 None:intergenic 25.0%
! TTAAATTCTTTATTCGACCA+TGG + chr4_2:20042477-20042496 Msa0593700:intron 25.0%
! AATTGACAATTCCATTTCAA+TGG - chr4_2:20042619-20042638 None:intergenic 25.0%
! AATGCACGCATTTAAAAAAT+TGG - chr4_2:20042678-20042697 None:intergenic 25.0%
! TGATTTCTCAAAATAAATGG+AGG - chr4_2:20042739-20042758 None:intergenic 25.0%
!! TATGACATTAATAATGGGAA+AGG - chr4_2:20042769-20042788 None:intergenic 25.0%
!! TCAAATTTTGTATATTGGGA+AGG - chr4_2:20042897-20042916 None:intergenic 25.0%
! TTACTAGAAGCCATAATAAT+GGG + chr4_2:20043248-20043267 Msa0593700:intron 25.0%
! TCATCTATCTGAAAAAATGT+CGG - chr4_2:20043357-20043376 None:intergenic 25.0%
! AACACAAAAGTAGTGAATTA+TGG + chr4_2:20043709-20043728 Msa0593700:three_prime_UTR 25.0%
! ATCAACTAAACACAAATATG+AGG - chr4_2:20043837-20043856 None:intergenic 25.0%
AAAATACAACAACCGAATGA+GGG + chr4_2:20038113-20038132 Msa0593700:exon 30.0%
!! TCATCGTTTTTCTGTTGAAT+TGG + chr4_2:20038294-20038313 Msa0593700:intron 30.0%
!! TTTGATTTTGAGAGAGATGA+TGG + chr4_2:20038346-20038365 Msa0593700:intron 30.0%
!! AGTGATTTTAGTATGTGATC+TGG + chr4_2:20038370-20038389 Msa0593700:intron 30.0%
TTTAAGGGTAAAATCGATTG+TGG + chr4_2:20038788-20038807 Msa0593700:intron 30.0%
AACAGAGAATTTACTAAGAG+CGG + chr4_2:20039090-20039109 Msa0593700:intron 30.0%
GTTAGAGGTAAGAAATTGTT+GGG + chr4_2:20039171-20039190 Msa0593700:intron 30.0%
TAAGAAATTGTTGGGTATGA+GGG + chr4_2:20039179-20039198 Msa0593700:intron 30.0%
ATTCACACTTGAAATACGAA+CGG + chr4_2:20039364-20039383 Msa0593700:intron 30.0%
! GTGATTTCTTTTCATAGTCA+AGG + chr4_2:20039416-20039435 Msa0593700:intron 30.0%
! TTTTGATCTTTTGCGTGAAT+TGG + chr4_2:20039685-20039704 Msa0593700:intron 30.0%
ATTCAACCACTTCTACTAAT+GGG - chr4_2:20039903-20039922 None:intergenic 30.0%
! TAAACACATGTTAGTTTCTG+TGG - chr4_2:20039938-20039957 None:intergenic 30.0%
TTAGAATCATGTTTGACAAG+AGG - chr4_2:20039995-20040014 None:intergenic 30.0%
TCTTGTCAAACATGATTCTA+AGG + chr4_2:20039994-20040013 Msa0593700:intron 30.0%
AGTATTTAAGAATCGGGTAT+GGG - chr4_2:20040258-20040277 None:intergenic 30.0%
AAGTATTTAAGAATCGGGTA+TGG - chr4_2:20040259-20040278 None:intergenic 30.0%
ACGGGTAAGTATTTAAGAAT+CGG - chr4_2:20040265-20040284 None:intergenic 30.0%
! TGTATTACAACGTTGCTATT+GGG - chr4_2:20040421-20040440 None:intergenic 30.0%
ATGTATTACAACGTTGCTAT+TGG - chr4_2:20040422-20040441 None:intergenic 30.0%
TATGTTAATCCCCAATTTGA+CGG - chr4_2:20040709-20040728 None:intergenic 30.0%
!! GGTGTTTACTTTTCGTATTA+CGG + chr4_2:20040765-20040784 Msa0593700:intron 30.0%
! TTGTTATTAGGTTATGTGGA+TGG + chr4_2:20040889-20040908 Msa0593700:intron 30.0%
! AATTTTATAGCAACAGACCT+GGG - chr4_2:20041094-20041113 None:intergenic 30.0%
! AAATTTTATAGCAACAGACC+TGG - chr4_2:20041095-20041114 None:intergenic 30.0%
CCATGATTTCCATAATACAA+AGG - chr4_2:20041394-20041413 None:intergenic 30.0%
CCTTTGTATTATGGAAATCA+TGG + chr4_2:20041391-20041410 Msa0593700:intron 30.0%
TTGCAAGCAAAATCTAAATG+CGG + chr4_2:20041500-20041519 Msa0593700:intron 30.0%
!! TGAGATTTTTAGGAGAAGAT+CGG + chr4_2:20041547-20041566 Msa0593700:intron 30.0%
ATTTATTGTCACCTTGAATC+AGG + chr4_2:20041641-20041660 Msa0593700:intron 30.0%
ATAAAGAAATCATGGTCTGA+TGG - chr4_2:20041974-20041993 None:intergenic 30.0%
TTGACATGATATATTCTCTG+TGG + chr4_2:20042003-20042022 Msa0593700:intron 30.0%
TTCTGTTAGGGATGATATTT+CGG + chr4_2:20042280-20042299 Msa0593700:CDS 30.0%
AATTTAACTCAGATCATGCT+CGG - chr4_2:20042321-20042340 None:intergenic 30.0%
GTAGCTAACATTTGTCAATA+TGG + chr4_2:20042808-20042827 Msa0593700:intron 30.0%
ATTTAAAAGACACCAAATGC+AGG - chr4_2:20042846-20042865 None:intergenic 30.0%
! CGGCTCAAATTTTGTATATT+GGG - chr4_2:20042901-20042920 None:intergenic 30.0%
! TCGGCTCAAATTTTGTATAT+TGG - chr4_2:20042902-20042921 None:intergenic 30.0%
!!! CTCATTTATTGGTTTTAGCA+AGG + chr4_2:20043074-20043093 Msa0593700:intron 30.0%
!! AAATTCTTAGGGCATTTTGT+CGG + chr4_2:20043130-20043149 Msa0593700:intron 30.0%
CTTACTAGAAGCCATAATAA+TGG + chr4_2:20043247-20043266 Msa0593700:intron 30.0%
TTCTATAGGACCCATTATTA+TGG - chr4_2:20043261-20043280 None:intergenic 30.0%
GATCTGATAAGAGTTTCTAT+AGG - chr4_2:20043275-20043294 None:intergenic 30.0%
AAAACAGGATATCACAGTAA+TGG - chr4_2:20043305-20043324 None:intergenic 30.0%
!!! GTGATATCCTGTTTTTTTTG+CGG + chr4_2:20043310-20043329 Msa0593700:intron 30.0%
CATCTATCTGAAAAAATGTC+GGG - chr4_2:20043356-20043375 None:intergenic 30.0%
AATAACTGCTGACAGAATAA+GGG - chr4_2:20043629-20043648 None:intergenic 30.0%
CCAATAAATGATGAGAAACA+AGG - chr4_2:20043662-20043681 None:intergenic 30.0%
! CCTTGTTTCTCATCATTTAT+TGG + chr4_2:20043659-20043678 Msa0593700:CDS 30.0%
TGTCCCACAAATTTCTGTTT+CGG + chr4_2:20038030-20038049 Msa0593700:five_prime_UTR 35.0%
ACACCGAAACAGAAATTTGT+GGG - chr4_2:20038036-20038055 None:intergenic 35.0%
TACACCGAAACAGAAATTTG+TGG - chr4_2:20038037-20038056 None:intergenic 35.0%
CAAAATACAACAACCGAATG+AGG + chr4_2:20038112-20038131 Msa0593700:exon 35.0%
AATCTAGATTTGCAGGAATC+AGG + chr4_2:20038144-20038163 Msa0593700:CDS 35.0%
CTTTCTTCTTACGCTAAACT+CGG + chr4_2:20038222-20038241 Msa0593700:CDS 35.0%
AACGATGAATGCGATGAAAA+GGG - chr4_2:20038282-20038301 None:intergenic 35.0%
AAACGATGAATGCGATGAAA+AGG - chr4_2:20038283-20038302 None:intergenic 35.0%
! TTTTAGTATGTGATCTGGAG+TGG + chr4_2:20038375-20038394 Msa0593700:intron 35.0%
!!! TTTGTTTGGTTTTGCAAGCA+CGG + chr4_2:20038523-20038542 Msa0593700:intron 35.0%
! GAATTGATTCTACTTGAAGC+TGG - chr4_2:20038833-20038852 None:intergenic 35.0%
!! GTTTGGTTTCAATTTTGGAG+TGG - chr4_2:20038932-20038951 None:intergenic 35.0%
! ATGCATTTCATCAGAAGTGT+CGG + chr4_2:20039021-20039040 Msa0593700:intron 35.0%
ACAGAGAATTTACTAAGAGC+GGG + chr4_2:20039091-20039110 Msa0593700:intron 35.0%
AGCTCAAAACAATGCTTCAT+TGG + chr4_2:20039142-20039161 Msa0593700:intron 35.0%
GCTCAAAACAATGCTTCATT+GGG + chr4_2:20039143-20039162 Msa0593700:intron 35.0%
AAAACAATGCTTCATTGGGT+TGG + chr4_2:20039147-20039166 Msa0593700:intron 35.0%
AAACAATGCTTCATTGGGTT+GGG + chr4_2:20039148-20039167 Msa0593700:intron 35.0%
GGTTAGAGGTAAGAAATTGT+TGG + chr4_2:20039170-20039189 Msa0593700:intron 35.0%
GTAAGAAATTGTTGGGTATG+AGG + chr4_2:20039178-20039197 Msa0593700:intron 35.0%
AAGAAATTGTTGGGTATGAG+GGG + chr4_2:20039180-20039199 Msa0593700:intron 35.0%
TGCTAAAATTTAGGGAGATG+TGG - chr4_2:20039269-20039288 None:intergenic 35.0%
AACGGAAATGACATGACATA+GGG + chr4_2:20039382-20039401 Msa0593700:intron 35.0%
! CTTTTGGTAGGAATGTTCAT+TGG + chr4_2:20039448-20039467 Msa0593700:intron 35.0%
CATTCAACCACTTCTACTAA+TGG - chr4_2:20039904-20039923 None:intergenic 35.0%
TAACATGTGTTTAGCGTGTT+TGG + chr4_2:20039945-20039964 Msa0593700:intron 35.0%
TTTAGCGTGTTTGGTTATGT+TGG + chr4_2:20039954-20039973 Msa0593700:intron 35.0%
CTAAGGAAAATACAAGTGCT+TGG + chr4_2:20040011-20040030 Msa0593700:intron 35.0%
! AGTCTGCCTTCTTATTGATT+AGG + chr4_2:20040188-20040207 Msa0593700:intron 35.0%
! TTATTGATTAGGCATGGCAA+TGG + chr4_2:20040199-20040218 Msa0593700:intron 35.0%
! TATTGATTAGGCATGGCAAT+GGG + chr4_2:20040200-20040219 Msa0593700:intron 35.0%
GTATTTAAGAATCGGGTATG+GGG - chr4_2:20040257-20040276 None:intergenic 35.0%
CGGGTAAGTATTTAAGAATC+GGG - chr4_2:20040264-20040283 None:intergenic 35.0%
! GTATTACAACGTTGCTATTG+GGG - chr4_2:20040420-20040439 None:intergenic 35.0%
! TTTTCCCCGATTTCAAAACA+CGG - chr4_2:20040647-20040666 None:intergenic 35.0%
ATGTTAATCCCCAATTTGAC+GGG - chr4_2:20040708-20040727 None:intergenic 35.0%
!! CATTCTGACCTCTTGTTATT+AGG + chr4_2:20040877-20040896 Msa0593700:intron 35.0%
CCACATAACCTAATAACAAG+AGG - chr4_2:20040888-20040907 None:intergenic 35.0%
!! CCTCTTGTTATTAGGTTATG+TGG + chr4_2:20040885-20040904 Msa0593700:intron 35.0%
TTATTAGGTTATGTGGATGG+TGG + chr4_2:20040892-20040911 Msa0593700:intron 35.0%
TACTTCTGTAACACAGAAGT+TGG + chr4_2:20041038-20041057 Msa0593700:CDS 35.0%
TATTCTTCATGAGTTTACCC+AGG + chr4_2:20041074-20041093 Msa0593700:CDS 35.0%
AGAATATACAGGTTATGGTG+TGG - chr4_2:20041226-20041245 None:intergenic 35.0%
CACCATAACCTGTATATTCT+TGG + chr4_2:20041226-20041245 Msa0593700:intron 35.0%
GTCCAAGAATATACAGGTTA+TGG - chr4_2:20041231-20041250 None:intergenic 35.0%
TATATTCTTGGACACTGCAT+TGG + chr4_2:20041238-20041257 Msa0593700:intron 35.0%
ATATTCTTGGACACTGCATT+GGG + chr4_2:20041239-20041258 Msa0593700:intron 35.0%
CACAGAAGTTGAATCTAGAA+TGG - chr4_2:20041369-20041388 None:intergenic 35.0%
TTCTGTGAGCCTTTGTATTA+TGG + chr4_2:20041382-20041401 Msa0593700:intron 35.0%
TGCAAGCAAAATCTAAATGC+GGG + chr4_2:20041501-20041520 Msa0593700:intron 35.0%
TCTTTGTAATTTCAGAACCC+AGG + chr4_2:20041618-20041637 Msa0593700:intron 35.0%
TCAAGGTGACAATAAATCCT+GGG - chr4_2:20041638-20041657 None:intergenic 35.0%
TTCAAGGTGACAATAAATCC+TGG - chr4_2:20041639-20041658 None:intergenic 35.0%
GAAAATTCAAGCCTGATTCA+AGG - chr4_2:20041655-20041674 None:intergenic 35.0%
! TATTTTCTATGCTCGGTATC+AGG + chr4_2:20041688-20041707 Msa0593700:intron 35.0%
! TCTCCTTTTTGATAGATGGT+GGG - chr4_2:20041799-20041818 None:intergenic 35.0%
! ACTCTCTCCTTTTTGATAGA+TGG - chr4_2:20041803-20041822 None:intergenic 35.0%
AAAGTTCAATTTGGCTAAGC+CGG - chr4_2:20041936-20041955 None:intergenic 35.0%
ATATTCTCTGTGGTTCTTTG+TGG + chr4_2:20042013-20042032 Msa0593700:intron 35.0%
CCTGAAGCAAACAACAAAAA+AGG - chr4_2:20042202-20042221 None:intergenic 35.0%
!!! CCTTTTTTGTTGTTTGCTTC+AGG + chr4_2:20042199-20042218 Msa0593700:intron 35.0%
!!! AGAGCTTTTAGGTTCTGTTA+GGG + chr4_2:20042268-20042287 Msa0593700:CDS 35.0%
GGATGATATTTCGGACTTTA+AGG + chr4_2:20042289-20042308 Msa0593700:CDS 35.0%
ATTTAACTCAGATCATGCTC+GGG - chr4_2:20042320-20042339 None:intergenic 35.0%
TAGACTTAACTTCTTCTAGC+AGG + chr4_2:20042367-20042386 Msa0593700:intron 35.0%
TGCTTAATTAATGGTCACCA+TGG - chr4_2:20042497-20042516 None:intergenic 35.0%
TGGGACTGATGCTTAATTAA+TGG - chr4_2:20042506-20042525 None:intergenic 35.0%
ATATTGGGAAGGTCAAACTA+TGG - chr4_2:20042886-20042905 None:intergenic 35.0%
CTGGAATCTCAATATCAAGT+CGG - chr4_2:20042921-20042940 None:intergenic 35.0%
GGTCACATTAATGCTTAGTT+TGG + chr4_2:20043095-20043114 Msa0593700:intron 35.0%
GCAGTACTGCATTAATAGAT+TGG + chr4_2:20043174-20043193 Msa0593700:intron 35.0%
CAAGAATCCGCAAAAAAAAC+AGG - chr4_2:20043320-20043339 None:intergenic 35.0%
!! TGACCTAATACTACTTTTGC+AGG + chr4_2:20043574-20043593 Msa0593700:intron 35.0%
GAACCTGCAAAAGTAGTATT+AGG - chr4_2:20043580-20043599 None:intergenic 35.0%
GATAAGAAGGCGAAAATCAA+GGG + chr4_2:20043600-20043619 Msa0593700:CDS 35.0%
CAATAACTGCTGACAGAATA+AGG - chr4_2:20043630-20043649 None:intergenic 35.0%
!!! CTATTTACTTTTTAGGGACG+AGG + chr4_2:20043771-20043790 Msa0593700:three_prime_UTR 35.0%
TTTACAATCCACATTTGCCT+AGG + chr4_2:20043809-20043828 Msa0593700:three_prime_UTR 35.0%
CACGACAAATCTAGATTTGC+AGG + chr4_2:20038137-20038156 Msa0593700:CDS 40.0%
TAGATTTGCAGGAATCAGGT+TGG + chr4_2:20038148-20038167 Msa0593700:CDS 40.0%
AGATTTGCAGGAATCAGGTT+GGG + chr4_2:20038149-20038168 Msa0593700:CDS 40.0%
ACGATGAATGCGATGAAAAG+GGG - chr4_2:20038281-20038300 None:intergenic 40.0%
GGAATGGAATGATTGATCTG+TGG + chr4_2:20038396-20038415 Msa0593700:intron 40.0%
! GGTACTAGCTTATGAAGTAG+TGG + chr4_2:20038430-20038449 Msa0593700:intron 40.0%
ATGAAGTAGTGGCATGAACA+CGG + chr4_2:20038441-20038460 Msa0593700:intron 40.0%
TCTCAAATTATCAGCGGTGT+TGG + chr4_2:20038625-20038644 Msa0593700:intron 40.0%
CTTCTGATGAAATGCATGTC+CGG - chr4_2:20039018-20039037 None:intergenic 40.0%
AGAATTTACTAAGAGCGGGT+AGG + chr4_2:20039095-20039114 Msa0593700:intron 40.0%
GAATTTACTAAGAGCGGGTA+GGG + chr4_2:20039096-20039115 Msa0593700:intron 40.0%
! TTGAGCTTCAAAGTGTTTGC+AGG - chr4_2:20039129-20039148 None:intergenic 40.0%
! AACAATGCTTCATTGGGTTG+GGG + chr4_2:20039149-20039168 Msa0593700:intron 40.0%
ACTTTGAGCAACCATACTAG+TGG + chr4_2:20039234-20039253 Msa0593700:intron 40.0%
AGCAACCATACTAGTGGAAT+TGG + chr4_2:20039240-20039259 Msa0593700:intron 40.0%
ACGAGCATCATATAAGTGAG+AGG - chr4_2:20039313-20039332 None:intergenic 40.0%
GAACGGAAATGACATGACAT+AGG + chr4_2:20039381-20039400 Msa0593700:intron 40.0%
! TTTTCATAGTCAAGGCGTAG+CGG + chr4_2:20039424-20039443 Msa0593700:intron 40.0%
GAAGTTCCCATTAGTAGAAG+TGG + chr4_2:20039894-20039913 Msa0593700:intron 40.0%
ACAAGTGCTTGGTTACTATG+AGG + chr4_2:20040022-20040041 Msa0593700:intron 40.0%
! GCCTTCTTATTGATTAGGCA+TGG + chr4_2:20040193-20040212 Msa0593700:intron 40.0%
GCCATGCCTAATCAATAAGA+AGG - chr4_2:20040197-20040216 None:intergenic 40.0%
ATTGATTAGGCATGGCAATG+GGG + chr4_2:20040201-20040220 Msa0593700:intron 40.0%
TTCAATTTCTCATCCCCGTT+GGG - chr4_2:20040301-20040320 None:intergenic 40.0%
ATTCAATTTCTCATCCCCGT+TGG - chr4_2:20040302-20040321 None:intergenic 40.0%
AATTATTCAATGCGGGGACA+GGG - chr4_2:20040366-20040385 None:intergenic 40.0%
AAATTATTCAATGCGGGGAC+AGG - chr4_2:20040367-20040386 None:intergenic 40.0%
!! TTTTACATTTGGGACGGGTT+TGG + chr4_2:20040574-20040593 Msa0593700:intron 40.0%
! TTTACATTTGGGACGGGTTT+GGG + chr4_2:20040575-20040594 Msa0593700:intron 40.0%
CGATTTCAAAACACGGGTAT+GGG - chr4_2:20040640-20040659 None:intergenic 40.0%
!!! CCATACCCGTGTTTTGAAAT+CGG + chr4_2:20040638-20040657 Msa0593700:intron 40.0%
!!! CATACCCGTGTTTTGAAATC+GGG + chr4_2:20040639-20040658 Msa0593700:intron 40.0%
!!! ATACCCGTGTTTTGAAATCG+GGG + chr4_2:20040640-20040659 Msa0593700:intron 40.0%
TTTCCCCGATTTCAAAACAC+GGG - chr4_2:20040646-20040665 None:intergenic 40.0%
!! TTTTGACTGGGTTTGGGTAT+GGG - chr4_2:20040676-20040695 None:intergenic 40.0%
ATACCCAAACCCAGTCAAAA+CGG + chr4_2:20040676-20040695 Msa0593700:intron 40.0%
GTGTTGGGATAATATGGCTA+TGG + chr4_2:20040744-20040763 Msa0593700:intron 40.0%
GGATTGGATTTCCATTTCCA+TGG - chr4_2:20040953-20040972 None:intergenic 40.0%
ATAGTTTCTCGAGCAAGGAT+TGG - chr4_2:20040969-20040988 None:intergenic 40.0%
ATCCTTGCTCGAGAAACTAT+TGG + chr4_2:20040969-20040988 Msa0593700:CDS 40.0%
TTCTGTGTTACAGAAGTAGC+TGG - chr4_2:20041036-20041055 None:intergenic 40.0%
TGCAGTGTCCAAGAATATAC+AGG - chr4_2:20041237-20041256 None:intergenic 40.0%
CATGGGAGTTGAATCTAGAA+TGG + chr4_2:20041409-20041428 Msa0593700:intron 40.0%
GCAAGCAAAATCTAAATGCG+GGG + chr4_2:20041502-20041521 Msa0593700:intron 40.0%
CAAGCAAAATCTAAATGCGG+GGG + chr4_2:20041503-20041522 Msa0593700:intron 40.0%
! GGAGTTAGGCTGAGATTTTT+AGG + chr4_2:20041537-20041556 Msa0593700:intron 40.0%
GGACACAAATAAGGGAAGAA+CGG + chr4_2:20041733-20041752 Msa0593700:intron 40.0%
ATCCCCACCATCTATCAAAA+AGG + chr4_2:20041793-20041812 Msa0593700:intron 40.0%
! CTCCTTTTTGATAGATGGTG+GGG - chr4_2:20041798-20041817 None:intergenic 40.0%
! CTCTCCTTTTTGATAGATGG+TGG - chr4_2:20041800-20041819 None:intergenic 40.0%
! ATTCCCTCATGGGATTTTCA+CGG - chr4_2:20041881-20041900 None:intergenic 40.0%
! TTTTCACTGGATTCCCTCAT+GGG - chr4_2:20041891-20041910 None:intergenic 40.0%
! ATTTTCACTGGATTCCCTCA+TGG - chr4_2:20041892-20041911 None:intergenic 40.0%
AAGTTCAATTTGGCTAAGCC+GGG - chr4_2:20041935-20041954 None:intergenic 40.0%
AGAAATCATGGTCTGATGGT+AGG - chr4_2:20041970-20041989 None:intergenic 40.0%
GCAGCGAGATAAAGAAATCA+TGG - chr4_2:20041982-20042001 None:intergenic 40.0%
CATTGAGTTTATGTTCCCCT+TGG - chr4_2:20042237-20042256 None:intergenic 40.0%
GGGGAACATAAACTCAATGA+AGG + chr4_2:20042238-20042257 Msa0593700:CDS 40.0%
! AAGGAACATGCAGAGCTTTT+AGG + chr4_2:20042257-20042276 Msa0593700:CDS 40.0%
!!! CAGAGCTTTTAGGTTCTGTT+AGG + chr4_2:20042267-20042286 Msa0593700:CDS 40.0%
TCACGTAATAACTGCATCCT+TGG - chr4_2:20042410-20042429 None:intergenic 40.0%
TTACATGAGACGTACTTCCA+TGG - chr4_2:20042445-20042464 None:intergenic 40.0%
TTGTTGCTCTGTATAGCTCA+TGG + chr4_2:20042558-20042577 Msa0593700:intron 40.0%
TGGGATCATCTCCATTGAAA+TGG + chr4_2:20042605-20042624 Msa0593700:intron 40.0%
TGTCATATAGCTAGGTGAAC+TGG + chr4_2:20042782-20042801 Msa0593700:intron 40.0%
TGTTTGTTCTTGCCTGCATT+TGG + chr4_2:20042831-20042850 Msa0593700:intron 40.0%
TTCCAGTATTCAAGCAGTGA+TGG + chr4_2:20042935-20042954 Msa0593700:intron 40.0%
TTCCATCACTGCTTGAATAC+TGG - chr4_2:20042940-20042959 None:intergenic 40.0%
CTGCATCTGTGCTCATTTAT+TGG + chr4_2:20043063-20043082 Msa0593700:intron 40.0%
AAGGAAAAGTGAGGCTTCTT+GGG + chr4_2:20043445-20043464 Msa0593700:CDS 40.0%
! CTTTTGCAGGTTCGATAAGA+AGG + chr4_2:20043587-20043606 Msa0593700:intron 40.0%
CGATAAGAAGGCGAAAATCA+AGG + chr4_2:20043599-20043618 Msa0593700:CDS 40.0%
AACACAAATATGAGGCTCCT+AGG - chr4_2:20043829-20043848 None:intergenic 40.0%
GATTTGTCGTGTCCCTCATT+CGG - chr4_2:20038128-20038147 None:intergenic 45.0%
CGATGAAAAGGGGAAAGGAA+TGG - chr4_2:20038271-20038290 None:intergenic 45.0%
GAATGCGATGAAAAGGGGAA+AGG - chr4_2:20038276-20038295 None:intergenic 45.0%
! GTATGTGATCTGGAGTGGAA+TGG + chr4_2:20038380-20038399 Msa0593700:intron 45.0%
GATTGATCTGTGGCTGATGT+CGG + chr4_2:20038406-20038425 Msa0593700:intron 45.0%
TTGTCACCACCTATGAAGCA+CGG - chr4_2:20038669-20038688 None:intergenic 45.0%
GGTGTCCAATTCCACTAGTA+TGG - chr4_2:20039248-20039267 None:intergenic 45.0%
AGTTTATGGATCCCCTGAAG+TGG + chr4_2:20039545-20039564 Msa0593700:intron 45.0%
GTTTATGGATCCCCTGAAGT+GGG + chr4_2:20039546-20039565 Msa0593700:intron 45.0%
GGTTAAGTTCCGATGAGCTT+TGG + chr4_2:20039582-20039601 Msa0593700:intron 45.0%
TGCATTTGGCCAAAGCTCAT+CGG - chr4_2:20039594-20039613 None:intergenic 45.0%
TTAAGAATCGGGTATGGGGA+CGG - chr4_2:20040253-20040272 None:intergenic 45.0%
TTCAAAACACGGGTATGGGA+CGG - chr4_2:20040636-20040655 None:intergenic 45.0%
CCGATTTCAAAACACGGGTA+TGG - chr4_2:20040641-20040660 None:intergenic 45.0%
!!! GTTTTGACTGGGTTTGGGTA+TGG - chr4_2:20040677-20040696 None:intergenic 45.0%
TACCCAAACCCAGTCAAAAC+GGG + chr4_2:20040677-20040696 Msa0593700:intron 45.0%
GTCTTGGAAGTCCATGGAAA+TGG + chr4_2:20040939-20040958 Msa0593700:CDS 45.0%
GTCCAATAGTTTCTCGAGCA+AGG - chr4_2:20040974-20040993 None:intergenic 45.0%
AGATGCAGCACATCTACTCA+TGG - chr4_2:20041007-20041026 None:intergenic 45.0%
CTGTAACACAGAAGTTGGCT+AGG + chr4_2:20041043-20041062 Msa0593700:CDS 45.0%
TTGCTTGCAACACGTGAACT+TGG + chr4_2:20041292-20041311 Msa0593700:intron 45.0%
TGCTTGCAACACGTGAACTT+GGG + chr4_2:20041293-20041312 Msa0593700:intron 45.0%
ACAGTTGTCAGTTGTGAGTG+TGG + chr4_2:20041322-20041341 Msa0593700:intron 45.0%
CAGTTGTCAGTTGTGAGTGT+GGG + chr4_2:20041323-20041342 Msa0593700:intron 45.0%
CAGTTGTCAGTTGTGAGTGT+GGG - chr4_2:20041323-20041342 None:intergenic 45.0%
ACAGTTGTCAGTTGTGAGTG+TGG - chr4_2:20041322-20041341 None:intergenic 45.0%
TGCTTGCAACACGTGAACTT+GGG - chr4_2:20041293-20041312 None:intergenic 45.0%
TTGCTTGCAACACGTGAACT+TGG - chr4_2:20041292-20041311 None:intergenic 45.0%
CAAAATCTAAATGCGGGGGT+GGG + chr4_2:20041507-20041526 Msa0593700:intron 45.0%
TCTCATGTCGCATTTCCATC+TGG + chr4_2:20041766-20041785 Msa0593700:intron 45.0%
AATCCCGTGAAAATCCCATG+AGG + chr4_2:20041874-20041893 Msa0593700:intron 45.0%
ATCCCGTGAAAATCCCATGA+GGG + chr4_2:20041875-20041894 Msa0593700:intron 45.0%
! TTCCCTCATGGGATTTTCAC+GGG - chr4_2:20041880-20041899 None:intergenic 45.0%
GTTGTTTGCTTCAGGAGTTC+AGG + chr4_2:20042207-20042226 Msa0593700:intron 45.0%
AACTTCTTCTAGCAGGCATC+TGG + chr4_2:20042374-20042393 Msa0593700:intron 45.0%
CATCTGGTAGTATGTCACCA+AGG + chr4_2:20042390-20042409 Msa0593700:CDS 45.0%
ATGAGACGTACTTCCATGGA+TGG - chr4_2:20042441-20042460 None:intergenic 45.0%
TGTCAGACGCACAACTTTCT+GGG - chr4_2:20042525-20042544 None:intergenic 45.0%
GCTATACAGAGCAACAAGCA+TGG - chr4_2:20042555-20042574 None:intergenic 45.0%
AAGTGCCATCAAGAGTTGAC+AGG + chr4_2:20043023-20043042 Msa0593700:intron 45.0%
ATGCAGCAGTGTCTAAAGAG+TGG - chr4_2:20043049-20043068 None:intergenic 45.0%
TCAAGCTACAAGAGCTGTCT+TGG + chr4_2:20043392-20043411 Msa0593700:CDS 45.0%
CAAGCTACAAGAGCTGTCTT+GGG + chr4_2:20043393-20043412 Msa0593700:CDS 45.0%
GCATTGTTTGGCGATGTTCA+AGG + chr4_2:20043426-20043445 Msa0593700:CDS 45.0%
GCGATGTTCAAGGAAAAGTG+AGG + chr4_2:20043436-20043455 Msa0593700:CDS 45.0%
CAAGGAAAAGTGAGGCTTCT+TGG + chr4_2:20043444-20043463 Msa0593700:CDS 45.0%
AGGAAAAGTGAGGCTTCTTG+GGG + chr4_2:20043446-20043465 Msa0593700:CDS 45.0%
CGAGCAAGCTACGAATAATG+GGG - chr4_2:20043479-20043498 None:intergenic 45.0%
CCGAGCAAGCTACGAATAAT+GGG - chr4_2:20043480-20043499 None:intergenic 45.0%
!! CCCATTATTCGTAGCTTGCT+CGG + chr4_2:20043477-20043496 Msa0593700:CDS 45.0%
ACCGAGCAAGCTACGAATAA+TGG - chr4_2:20043481-20043500 None:intergenic 45.0%
TGCGCAGAGTAAAGAGAGTG+TGG - chr4_2:20038079-20038098 None:intergenic 50.0%
!! TTTGCAGGAATCAGGTTGGG+AGG + chr4_2:20038152-20038171 Msa0593700:CDS 50.0%
AGGTTGGGAGGAACTTCGTA+AGG + chr4_2:20038164-20038183 Msa0593700:CDS 50.0%
! AAGGAAGCGCGTAAGATCGA+AGG + chr4_2:20038183-20038202 Msa0593700:CDS 50.0%
!! CTCGGTGCTAGATTCACTCA+AGG + chr4_2:20038240-20038259 Msa0593700:CDS 50.0%
GGTGCTAGATTCACTCAAGG+AGG + chr4_2:20038243-20038262 Msa0593700:CDS 50.0%
ACACGACACTTGTCAGACAC+CGG - chr4_2:20038562-20038581 None:intergenic 50.0%
CACCTATGAAGCACGGATAG+CGG - chr4_2:20038662-20038681 None:intergenic 50.0%
GTGTTAGTGTCCTGTCAGTG+TGG + chr4_2:20038978-20038997 Msa0593700:intron 50.0%
CTGTCAGTGTGGACATGTGT+CGG + chr4_2:20038989-20039008 Msa0593700:intron 50.0%
TTTACTAAGAGCGGGTAGGG+TGG + chr4_2:20039099-20039118 Msa0593700:intron 50.0%
!! CTTCATTGGGTTGGGGTTAG+AGG + chr4_2:20039156-20039175 Msa0593700:intron 50.0%
GGCGCTTGTAATAGAGTGCA+AGG + chr4_2:20039469-20039488 Msa0593700:intron 50.0%
CCTCACGATCAATCCAACGA+TGG - chr4_2:20039515-20039534 None:intergenic 50.0%
CCATCGTTGGATTGATCGTG+AGG + chr4_2:20039512-20039531 Msa0593700:intron 50.0%
TCGTTGGATTGATCGTGAGG+TGG + chr4_2:20039515-20039534 Msa0593700:intron 50.0%
GAGGTGGCGTGAAGAGTTTA+TGG + chr4_2:20039531-20039550 Msa0593700:intron 50.0%
GTGTGGAAATCCCACTTCAG+GGG - chr4_2:20039559-20039578 None:intergenic 50.0%
CGTGTGGAAATCCCACTTCA+GGG - chr4_2:20039560-20039579 None:intergenic 50.0%
CCTGAAGTGGGATTTCCACA+CGG + chr4_2:20039558-20039577 Msa0593700:intron 50.0%
ATCGGAACTTAACCTCCGTG+TGG - chr4_2:20039576-20039595 None:intergenic 50.0%
GCATGCGCTAAGTGTGTGTT+TGG - chr4_2:20039839-20039858 None:intergenic 50.0%
ACACACACTTAGCGCATGCT+TGG + chr4_2:20039840-20039859 Msa0593700:intron 50.0%
TAAGAATCGGGTATGGGGAC+GGG - chr4_2:20040252-20040271 None:intergenic 50.0%
TTGGGTATGGGTAGGGTAAC+GGG - chr4_2:20040283-20040302 None:intergenic 50.0%
GTTGGGTATGGGTAGGGTAA+CGG - chr4_2:20040284-20040303 None:intergenic 50.0%
GTTACCCTACCCATACCCAA+CGG + chr4_2:20040283-20040302 Msa0593700:intron 50.0%
TTACCCTACCCATACCCAAC+GGG + chr4_2:20040284-20040303 Msa0593700:intron 50.0%
TTCTCATCCCCGTTGGGTAT+GGG - chr4_2:20040295-20040314 None:intergenic 50.0%
TTTCTCATCCCCGTTGGGTA+TGG - chr4_2:20040296-20040315 None:intergenic 50.0%
! ATTTGGGACGGGTTTGGGTA+TGG + chr4_2:20040580-20040599 Msa0593700:intron 50.0%
! TTTGGGACGGGTTTGGGTAT+GGG + chr4_2:20040581-20040600 Msa0593700:intron 50.0%
ACGGGTTTGGGTATGGGTTT+GGG + chr4_2:20040587-20040606 Msa0593700:intron 50.0%
! TTTGGGTATGGGTTTGGGGT+GGG + chr4_2:20040592-20040611 Msa0593700:intron 50.0%
TCAAAACACGGGTATGGGAC+GGG - chr4_2:20040635-20040654 None:intergenic 50.0%
CTGGGTTTGGGTATGGGTAT+GGG - chr4_2:20040670-20040689 None:intergenic 50.0%
ACTGGGTTTGGGTATGGGTA+TGG - chr4_2:20040671-20040690 None:intergenic 50.0%
ACCCAAACCCAGTCAAAACG+GGG + chr4_2:20040678-20040697 Msa0593700:intron 50.0%
!!! TCCCCGTTTTGACTGGGTTT+GGG - chr4_2:20040682-20040701 None:intergenic 50.0%
!!! TTCCCCGTTTTGACTGGGTT+TGG - chr4_2:20040683-20040702 None:intergenic 50.0%
!!! GGGTTTTCCCCGTTTTGACT+GGG - chr4_2:20040688-20040707 None:intergenic 50.0%
ACGGGGAAAACCCGTCAAAT+TGG + chr4_2:20040695-20040714 Msa0593700:intron 50.0%
CGGGGAAAACCCGTCAAATT+GGG + chr4_2:20040696-20040715 Msa0593700:intron 50.0%
GGGGAAAACCCGTCAAATTG+GGG + chr4_2:20040697-20040716 Msa0593700:intron 50.0%
ATGGTGGCTCACCATCTGTT+GGG + chr4_2:20040908-20040927 Msa0593700:CDS 50.0%
CATGGACTTCCAAGACCTAC+TGG - chr4_2:20040935-20040954 None:intergenic 50.0%
CAGTAGGTCTTGGAAGTCCA+TGG + chr4_2:20040933-20040952 Msa0593700:CDS 50.0%
AGTAGATGTGCTGCATCTGC+TGG + chr4_2:20041009-20041028 Msa0593700:CDS 50.0%
TCAGTTGTGAGTGTGGGTGT+TGG - chr4_2:20041329-20041348 None:intergenic 50.0%
GCAAAATCTAAATGCGGGGG+TGG + chr4_2:20041506-20041525 Msa0593700:intron 50.0%
! ATGGTGGGGATTTCACCAGA+TGG - chr4_2:20041784-20041803 None:intergenic 50.0%
CAATTTGGCTAAGCCGGGAA+TGG - chr4_2:20041930-20041949 None:intergenic 50.0%
AGACGTACTTCCATGGATGG+AGG - chr4_2:20042438-20042457 None:intergenic 50.0%
CTGTCAGACGCACAACTTTC+TGG - chr4_2:20042526-20042545 None:intergenic 50.0%
AGTGGCCTGTCAACTCTTGA+TGG - chr4_2:20043031-20043050 None:intergenic 50.0%
AGCTGTCTTGGGTTCTCAGA+GGG + chr4_2:20043404-20043423 Msa0593700:CDS 50.0%
!! GGTTCTCAGAGGGCATTGTT+TGG + chr4_2:20043414-20043433 Msa0593700:CDS 50.0%
!! TCGTAGCTTGCTCGGTATGT+TGG + chr4_2:20043485-20043504 Msa0593700:intron 50.0%
ATGAGGCTCCTAGGCAAATG+TGG - chr4_2:20043820-20043839 None:intergenic 50.0%
TGATCTGTGGCTGATGTCGG+TGG + chr4_2:20038409-20038428 Msa0593700:intron 55.0%
CACGACACTTGTCAGACACC+GGG - chr4_2:20038561-20038580 None:intergenic 55.0%
GTCCGCTATCCGTGCTTCAT+AGG + chr4_2:20038657-20038676 Msa0593700:intron 55.0%
CGCTATCCGTGCTTCATAGG+TGG + chr4_2:20038660-20038679 Msa0593700:intron 55.0%
CGACACATGTCCACACTGAC+AGG - chr4_2:20038991-20039010 None:intergenic 55.0%
TGTGGACATGTGTCGGACAC+CGG + chr4_2:20038996-20039015 Msa0593700:intron 55.0%
! GTCAAGGCGTAGCGGTCTTT+TGG + chr4_2:20039432-20039451 Msa0593700:intron 55.0%
! AGGCGTAGCGGTCTTTTGGT+AGG + chr4_2:20039436-20039455 Msa0593700:intron 55.0%
TGCAAGGAATGCACCACACG+AGG + chr4_2:20039485-20039504 Msa0593700:intron 55.0%
AAGGAATGCACCACACGAGG+TGG + chr4_2:20039488-20039507 Msa0593700:intron 55.0%
CCGTGTGGAAATCCCACTTC+AGG - chr4_2:20039561-20039580 None:intergenic 55.0%
GAAGTGGGATTTCCACACGG+AGG + chr4_2:20039561-20039580 Msa0593700:intron 55.0%
GATTAGGCATGGCAATGGGG+CGG + chr4_2:20040204-20040223 Msa0593700:intron 55.0%
ATTAGGCATGGCAATGGGGC+GGG + chr4_2:20040205-20040224 Msa0593700:intron 55.0%
AAGAATCGGGTATGGGGACG+GGG - chr4_2:20040251-20040270 None:intergenic 55.0%
TACCCTACCCATACCCAACG+GGG + chr4_2:20040285-20040304 Msa0593700:intron 55.0%
ATCCCCGTTGGGTATGGGTA+GGG - chr4_2:20040290-20040309 None:intergenic 55.0%
ATTCAATGCGGGGACAGGGA+TGG - chr4_2:20040362-20040381 None:intergenic 55.0%
! GACGGGTTTGGGTATGGGTT+TGG + chr4_2:20040586-20040605 Msa0593700:intron 55.0%
CGGGTTTGGGTATGGGTTTG+GGG + chr4_2:20040588-20040607 Msa0593700:intron 55.0%
GTTTGGGTATGGGTTTGGGG+TGG + chr4_2:20040591-20040610 Msa0593700:intron 55.0%
!! GGGACGGGTAACGGGTATAT+AGG - chr4_2:20040620-20040639 None:intergenic 55.0%
!! CGGGTTTTCCCCGTTTTGAC+TGG - chr4_2:20040689-20040708 None:intergenic 55.0%
! GATGGTGGCTCACCATCTGT+TGG + chr4_2:20040907-20040926 Msa0593700:CDS 55.0%
CACCATCTGTTGGGTCCAGT+AGG + chr4_2:20040917-20040936 Msa0593700:CDS 55.0%
GACCTACTGGACCCAACAGA+TGG - chr4_2:20040922-20040941 None:intergenic 55.0%
CTGTTGGGTCCAGTAGGTCT+TGG + chr4_2:20040923-20040942 Msa0593700:CDS 55.0%
AAATGCGGGGGTGGGAATCA+TGG + chr4_2:20041515-20041534 Msa0593700:intron 55.0%
AATGCGGGGGTGGGAATCAT+GGG + chr4_2:20041516-20041535 Msa0593700:intron 55.0%
GGGTGGGAATCATGGGAGTT+AGG + chr4_2:20041523-20041542 Msa0593700:intron 55.0%
TCCAGTGAAAATCCCACCGC+AGG + chr4_2:20041900-20041919 Msa0593700:intron 55.0%
! TCCTGCGGTGGGATTTTCAC+TGG - chr4_2:20041904-20041923 None:intergenic 55.0%
! GGGAATGGATTTCCTGCGGT+GGG - chr4_2:20041915-20041934 None:intergenic 55.0%
CACCGCAGGAAATCCATTCC+CGG + chr4_2:20041914-20041933 Msa0593700:intron 55.0%
! AGCCGGGAATGGATTTCCTG+CGG - chr4_2:20041919-20041938 None:intergenic 55.0%
TCAGGAGTTCAGGCGTACCA+AGG + chr4_2:20042217-20042236 Msa0593700:intron 55.0%
CAGGAGTTCAGGCGTACCAA+GGG + chr4_2:20042218-20042237 Msa0593700:intron 55.0%
AGGAGTTCAGGCGTACCAAG+GGG + chr4_2:20042219-20042238 Msa0593700:intron 55.0%
GAGCTGTCTTGGGTTCTCAG+AGG + chr4_2:20043403-20043422 Msa0593700:CDS 55.0%
CAACGATGGTCCACCTCGTG+TGG - chr4_2:20039501-20039520 None:intergenic 60.0%
CACACGAGGTGGACCATCGT+TGG + chr4_2:20039499-20039518 Msa0593700:intron 60.0%
TTAGGCATGGCAATGGGGCG+GGG + chr4_2:20040206-20040225 Msa0593700:intron 60.0%
CATCCCCGTTGGGTATGGGT+AGG - chr4_2:20040291-20040310 None:intergenic 60.0%
ACGGGTATGGGACGGGTAAC+GGG - chr4_2:20040628-20040647 None:intergenic 60.0%
CACGGGTATGGGACGGGTAA+CGG - chr4_2:20040629-20040648 None:intergenic 60.0%
! CGGGAATGGATTTCCTGCGG+TGG - chr4_2:20041916-20041935 None:intergenic 60.0%
CGTGAGAGAGCCTCCATCCA+TGG + chr4_2:20042425-20042444 Msa0593700:CDS 60.0%
GCACGGACACAGACGTGTCC+CGG + chr4_2:20038540-20038559 Msa0593700:intron 65.0%
ATCGGGTATGGGGACGGGGA+AGG - chr4_2:20040247-20040266 None:intergenic 65.0%
AATCCCATCCCCGTCCCCGA+CGG + chr4_2:20040319-20040338 Msa0593700:intron 65.0%
ATACCCGAACCCGTCGGGGA+CGG - chr4_2:20040332-20040351 None:intergenic 65.0%
AGGGATACCCGAACCCGTCG+GGG - chr4_2:20040336-20040355 None:intergenic 65.0%
CAGGGATACCCGAACCCGTC+GGG - chr4_2:20040337-20040356 None:intergenic 65.0%
GCAGGGATACCCGAACCCGT+CGG - chr4_2:20040338-20040357 None:intergenic 65.0%
GCATGGCAATGGGGCGGGGT+GGG + chr4_2:20040210-20040229 Msa0593700:intron 70.0%
CATGGCAATGGGGCGGGGTG+GGG + chr4_2:20040211-20040230 Msa0593700:intron 70.0%
ATCCCATCCCCGTCCCCGAC+GGG + chr4_2:20040320-20040339 Msa0593700:intron 70.0%
AACCCGTCGGGGACGGGGAT+GGG - chr4_2:20040325-20040344 None:intergenic 70.0%
! ATCCCCGTCCCCGACGGGTT+CGG + chr4_2:20040325-20040344 Msa0593700:intron 70.0%
TACCCGAACCCGTCGGGGAC+GGG - chr4_2:20040331-20040350 None:intergenic 70.0%
GCGGGGACAGGGATGGAGCA+GGG - chr4_2:20040355-20040374 None:intergenic 70.0%
TGCGGGGACAGGGATGGAGC+AGG - chr4_2:20040356-20040375 None:intergenic 70.0%
GGCATGGCAATGGGGCGGGG+TGG + chr4_2:20040209-20040228 Msa0593700:intron 75.0%
GCAATGGGGCGGGGTGGGGA+CGG + chr4_2:20040215-20040234 Msa0593700:intron 75.0%
CAATGGGGCGGGGTGGGGAC+GGG + chr4_2:20040216-20040235 Msa0593700:intron 75.0%
GAACCCGTCGGGGACGGGGA+TGG - chr4_2:20040326-20040345 None:intergenic 75.0%
! TCCCCGTCCCCGACGGGTTC+GGG + chr4_2:20040326-20040345 Msa0593700:intron 75.0%
ACCCGAACCCGTCGGGGACG+GGG - chr4_2:20040330-20040349 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 20037976 20043871 20037976 ID=Msa0593700;Name=Msa0593700
chr4_2 mRNA 20037976 20043871 20037976 ID=Msa0593700-mRNA-1;Parent=Msa0593700;Name=Msa0593700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=153|1|1|1|1|1|6|178|240
chr4_2 exon 20037976 20038264 20037976 ID=Msa0593700-mRNA-1:exon:5726;Parent=Msa0593700-mRNA-1
chr4_2 exon 20040899 20041095 20040899 ID=Msa0593700-mRNA-1:exon:5727;Parent=Msa0593700-mRNA-1
chr4_2 exon 20042221 20042310 20042221 ID=Msa0593700-mRNA-1:exon:5728;Parent=Msa0593700-mRNA-1
chr4_2 exon 20042389 20042460 20042389 ID=Msa0593700-mRNA-1:exon:5729;Parent=Msa0593700-mRNA-1
chr4_2 exon 20043369 20043498 20043369 ID=Msa0593700-mRNA-1:exon:5730;Parent=Msa0593700-mRNA-1
chr4_2 exon 20043596 20043871 20043596 ID=Msa0593700-mRNA-1:exon:5731;Parent=Msa0593700-mRNA-1
chr4_2 five_prime_UTR 20037976 20038128 20037976 ID=Msa0593700-mRNA-1:five_prime_utr;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20038129 20038264 20038129 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20040899 20041095 20040899 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20042221 20042310 20042221 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20042389 20042460 20042389 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20043369 20043498 20043369 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 CDS 20043596 20043693 20043596 ID=Msa0593700-mRNA-1:cds;Parent=Msa0593700-mRNA-1
chr4_2 three_prime_UTR 20043694 20043871 20043694 ID=Msa0593700-mRNA-1:three_prime_utr;Parent=Msa0593700-mRNA-1
Gene Sequence

>Msa0593700

ATGAGGGACACGACAAATCTAGATTTGCAGGAATCAGGTTGGGAGGAACTTCGTAAGGAAGCGCGTAAGATCGAAGGCGATCTCGACGTTAAGCTTTCTTCTTACGCTAAACTCGGTGCTAGATTCACTCAAGGAGGTTATGTGGATGGTGGCTCACCATCTGTTGGGTCCAGTAGGTCTTGGAAGTCCATGGAAATGGAAATCCAATCCTTGCTCGAGAAACTATTGGACATAAATGATTCCATGAGTAGATGTGCTGCATCTGCTGGACCAGCTACTTCTGTAACACAGAAGTTGGCTAGGCACAGAGATATTCTTCATGAGTTTACCCAGGAGTTCAGGCGTACCAAGGGGAACATAAACTCAATGAAGGAACATGCAGAGCTTTTAGGTTCTGTTAGGGATGATATTTCGGACTTTAAGGCATCTGGTAGTATGTCACCAAGGATGCAGTTATTACGTGAGAGAGCCTCCATCCATGGAAGTACGTCTCATATAGATGAAGTTATTAGTCAAGCTCAAGCTACAAGAGCTGTCTTGGGTTCTCAGAGGGCATTGTTTGGCGATGTTCAAGGAAAAGTGAGGCTTCTTGGGGACAAGTTCCCCATTATTCGTAGCTTGCTCGGTTCGATAAGAAGGCGAAAATCAAGGGATACCCTTATTCTGTCAGCAGTTATTGCTGCTTGTACCTTGTTTCTCATCATTTATTGGCTTTCAAAGTAA

Protein sequence

>Msa0593700

MRDTTNLDLQESGWEELRKEARKIEGDLDVKLSSYAKLGARFTQGGYVDGGSPSVGSSRSWKSMEMEIQSLLEKLLDINDSMSRCAASAGPATSVTQKLARHRDILHEFTQEFRRTKGNINSMKEHAELLGSVRDDISDFKASGSMSPRMQLLRERASIHGSTSHIDEVISQAQATRAVLGSQRALFGDVQGKVRLLGDKFPIIRSLLGSIRRRKSRDTLILSAVIAACTLFLIIYWLSK*