Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076620 | KEH42639.1 | 96.842 | 380 | 12 | 0 | 1 | 380 | 14 | 393 | 0.0 | 768 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076620 | sp|Q9XIN8|FB119_ARATH | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.16e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076620 | A0A072VKT4 | 96.842 | 380 | 12 | 0 | 1 | 380 | 14 | 393 | 0.0 | 768 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0076620 | Msa0127170 | 0.981734 | 2.569223e-153 | -8.615850e-47 |
| Msa0076620 | Msa0574910 | 0.803681 | 3.103812e-49 | -8.615850e-47 |
| Msa0076620 | Msa1462150 | 0.985149 | 1.117078e-162 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076620 | MtrunA17_Chr1g0185631 | 97.319 | 373 | 10 | 0 | 8 | 380 | 1 | 373 | 0.0 | 758 |
| Msa0076620 | MtrunA17_Chr1g0178131 | 32.533 | 375 | 181 | 12 | 15 | 380 | 15 | 326 | 3.82e-39 | 142 |
| Msa0076620 | MtrunA17_Chr7g0266771 | 29.132 | 357 | 192 | 9 | 27 | 376 | 29 | 331 | 1.84e-32 | 124 |
| Msa0076620 | MtrunA17_Chr2g0321721 | 27.759 | 299 | 160 | 11 | 27 | 324 | 17 | 260 | 6.69e-23 | 97.8 |
| Msa0076620 | MtrunA17_Chr4g0026081 | 26.111 | 360 | 217 | 11 | 23 | 380 | 29 | 341 | 8.14e-22 | 95.1 |
| Msa0076620 | MtrunA17_Chr3g0106991 | 25.234 | 321 | 179 | 15 | 19 | 332 | 9 | 275 | 9.82e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076620 | AT2G27310.1 | 29.581 | 382 | 216 | 12 | 5 | 380 | 1 | 335 | 9.31e-40 | 144 |
| Msa0076620 | AT3G44326.1 | 28.889 | 315 | 178 | 7 | 16 | 328 | 21 | 291 | 3.22e-33 | 127 |
| Msa0076620 | AT2G36090.1 | 26.316 | 380 | 199 | 13 | 9 | 380 | 6 | 312 | 1.16e-29 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCGTAGACATTAGGTTTA+AGG | 0.150564 | 1_2:-52794282 | Msa0076620:CDS |
| TCTCAAAAGAAGAGTGTTTA+TGG | 0.175919 | 1_2:-52794541 | Msa0076620:CDS |
| ATGGAAGGTGCTCATGTTAA+TGG | 0.288700 | 1_2:-52793771 | Msa0076620:CDS |
| ACCTCCTTGTTTACAATAAG+AGG | 0.301284 | 1_2:+52794416 | None:intergenic |
| CCACCGTTGTCGTTTGCATT+TGG | 0.305805 | 1_2:+52794224 | None:intergenic |
| TCCCTTTCCATTGATGTAAT+CGG | 0.324152 | 1_2:+52794098 | None:intergenic |
| ATTTGTATCTCCGTAATATT+CGG | 0.326290 | 1_2:+52794340 | None:intergenic |
| ATCTGCTCCAAAGTTCTATC+TGG | 0.337911 | 1_2:-52794251 | Msa0076620:CDS |
| TTGTATCCATCGTAGACATT+AGG | 0.341375 | 1_2:-52794289 | Msa0076620:CDS |
| GACATATTACGACGACTTGA+TGG | 0.348862 | 1_2:-52794611 | Msa0076620:CDS |
| GTGACGGTCTCCTTCTTAGT+TGG | 0.381809 | 1_2:-52794043 | Msa0076620:CDS |
| CCATGTGGCCTTCAACCAAT+AGG | 0.386680 | 1_2:-52794502 | Msa0076620:CDS |
| TCGGCTTCAGTCCAATCATC+AGG | 0.425919 | 1_2:+52794359 | None:intergenic |
| ATCTTGAGTACCCTGATGAT+TGG | 0.433708 | 1_2:-52794370 | Msa0076620:CDS |
| CTCAAAAGAAGAGTGTTTAT+GGG | 0.435795 | 1_2:-52794540 | Msa0076620:CDS |
| ACATCCTCCCTATTGGTTGA+AGG | 0.440128 | 1_2:+52794494 | None:intergenic |
| TGGAATTCCAGATAGAACTT+TGG | 0.449118 | 1_2:+52794244 | None:intergenic |
| GATGAGAAGTGAAAGTAGGT+TGG | 0.451574 | 1_2:-52793628 | Msa0076620:CDS |
| AAAGGAAAGACGGGAAACTA+TGG | 0.456534 | 1_2:-52794076 | Msa0076620:CDS |
| TGGACTGAAGCCGAATATTA+CGG | 0.458270 | 1_2:-52794350 | Msa0076620:CDS |
| AAAGACTTTGTCATCCGATT+CGG | 0.459110 | 1_2:-52793936 | Msa0076620:CDS |
| TGGTCGTGTCAAAATATGAT+AGG | 0.466049 | 1_2:-52797154 | None:intergenic |
| GATAGAACTTTGGAGCAGAT+TGG | 0.466451 | 1_2:+52794254 | None:intergenic |
| CCGGTAGAACCGATCCGAAT+CGG | 0.475698 | 1_2:+52793922 | None:intergenic |
| GCTAGCTGGAGTCCTCTTGA+CGG | 0.495411 | 1_2:-52793981 | Msa0076620:CDS |
| TTACTAATATCCAACTAAGA+AGG | 0.497399 | 1_2:+52794033 | None:intergenic |
| AGAAGATGAGAAGTGAAAGT+AGG | 0.501810 | 1_2:-52793632 | Msa0076620:CDS |
| GTGAGAAGATCGATACGAAA+AGG | 0.504746 | 1_2:+52794185 | None:intergenic |
| AACAGAACTTAGCATGCAGT+TGG | 0.506763 | 1_2:-52793799 | Msa0076620:CDS |
| ACCGATTACATCAATGGAAA+GGG | 0.509626 | 1_2:-52794099 | Msa0076620:CDS |
| TCTTCCACCGATTACATCAA+TGG | 0.509691 | 1_2:-52794105 | Msa0076620:CDS |
| CAAGCTAAACTAGCCAATGC+AGG | 0.510627 | 1_2:+52794587 | None:intergenic |
| AATCATCAGGGTACTCAAGA+TGG | 0.523721 | 1_2:+52794372 | None:intergenic |
| ATAGAGATGATAACAATGAC+GGG | 0.525539 | 1_2:-52794154 | Msa0076620:CDS |
| AATGAGTTCATGCTATCAAT+CGG | 0.526805 | 1_2:+52794653 | None:intergenic |
| CGATGGATACAAAATCTGAT+GGG | 0.530738 | 1_2:+52794300 | None:intergenic |
| ATGACAAAGTCTTTATCCGT+TGG | 0.531028 | 1_2:+52793945 | None:intergenic |
| ACGATGGATACAAAATCTGA+TGG | 0.536232 | 1_2:+52794299 | None:intergenic |
| CCGATTCGGATCGGTTCTAC+CGG | 0.537698 | 1_2:-52793922 | Msa0076620:CDS |
| GAAGACCGTCGGAGACAGAA+AGG | 0.538445 | 1_2:+52794123 | None:intergenic |
| AGTGCAAAATGAGTTAAAAG+AGG | 0.542717 | 1_2:-52793655 | Msa0076620:CDS |
| CATGTGGCCTTCAACCAATA+GGG | 0.543923 | 1_2:-52794501 | Msa0076620:CDS |
| GTGGTTCACATCGAAGAAGA+GGG | 0.551055 | 1_2:-52793843 | Msa0076620:CDS |
| GAAGGAAGAATGTCTTTAGC+CGG | 0.552493 | 1_2:+52793903 | None:intergenic |
| ACGACTTGATGGCCCTGCAT+TGG | 0.556002 | 1_2:-52794600 | Msa0076620:CDS |
| AAAAGTTTAATAGCATCCAT+TGG | 0.556860 | 1_2:-52794470 | Msa0076620:CDS |
| CCTATTGGTTGAAGGCCACA+TGG | 0.558028 | 1_2:+52794502 | None:intergenic |
| CACCGATTACATCAATGGAA+AGG | 0.562879 | 1_2:-52794100 | Msa0076620:CDS |
| CTTTGTCATCCGATTCGGAT+CGG | 0.562989 | 1_2:-52793931 | Msa0076620:CDS |
| CCTTGCTATGAAGTTTAGAG+TGG | 0.564179 | 1_2:-52793862 | Msa0076620:CDS |
| ATACATTGAACTACTTGAGA+AGG | 0.564781 | 1_2:+52793885 | None:intergenic |
| TGGAAAGGGAAAGGAAAGAC+GGG | 0.566620 | 1_2:-52794085 | Msa0076620:CDS |
| AAGCGGCTAATCTTGCTAGC+TGG | 0.570222 | 1_2:-52793995 | Msa0076620:CDS |
| AAACAAGAAAATAAAGCAAG+CGG | 0.575640 | 1_2:-52794012 | Msa0076620:CDS |
| TAGCATGCAGTTGGAAGACA+TGG | 0.578046 | 1_2:-52793790 | Msa0076620:CDS |
| AAGAAGCACTTAGCTGCAGA+AGG | 0.578468 | 1_2:-52793725 | Msa0076620:CDS |
| ATGCAAACGACAACGGTGGT+TGG | 0.580172 | 1_2:-52794220 | Msa0076620:CDS |
| CTTTCCATTGATGTAATCGG+TGG | 0.583174 | 1_2:+52794101 | None:intergenic |
| CTCTTGACGGTCAAAGACAT+TGG | 0.584847 | 1_2:-52793968 | Msa0076620:CDS |
| TTACATCAATGGAAAGGGAA+AGG | 0.585090 | 1_2:-52794094 | Msa0076620:CDS |
| GATAGAGATGATAACAATGA+CGG | 0.587224 | 1_2:-52794155 | Msa0076620:CDS |
| GATTGACATAGTAACAATCC+TGG | 0.587297 | 1_2:+52794679 | None:intergenic |
| AGTTTAATAGCATCCATTGG+CGG | 0.591001 | 1_2:-52794467 | Msa0076620:CDS |
| GTGACCCTTTCTGTCTCCGA+CGG | 0.591057 | 1_2:-52794128 | Msa0076620:CDS |
| AGTGGTTCACATCGAAGAAG+AGG | 0.597752 | 1_2:-52793844 | Msa0076620:CDS |
| ATGGAAAGGGAAAGGAAAGA+CGG | 0.603817 | 1_2:-52794086 | Msa0076620:CDS |
| CCACTCTAAACTTCATAGCA+AGG | 0.606643 | 1_2:+52793862 | None:intergenic |
| CGGCTTCAGTCCAATCATCA+GGG | 0.608380 | 1_2:+52794360 | None:intergenic |
| CTATGGCACGAGCTTCGTGA+CGG | 0.629342 | 1_2:-52794059 | Msa0076620:CDS |
| CTTAAACCTAATGTCTACGA+TGG | 0.632234 | 1_2:+52794283 | None:intergenic |
| TCCTCTTATTGTAAACAAGG+AGG | 0.636346 | 1_2:-52794417 | Msa0076620:CDS |
| CAATGTCTTTGACCGTCAAG+AGG | 0.638150 | 1_2:+52793969 | None:intergenic |
| AGGAGGTCGGAGAGTATCAG+TGG | 0.641231 | 1_2:-52794400 | Msa0076620:CDS |
| ATTCCAAATGCAAACGACAA+CGG | 0.641823 | 1_2:-52794227 | Msa0076620:CDS |
| CTTATTGTAAACAAGGAGGT+CGG | 0.648696 | 1_2:-52794413 | Msa0076620:CDS |
| AAGACCGTCGGAGACAGAAA+GGG | 0.648975 | 1_2:+52794124 | None:intergenic |
| AAGCTAAACTAGCCAATGCA+GGG | 0.650146 | 1_2:+52794588 | None:intergenic |
| ATGCAGTTGGAAGACATGGA+AGG | 0.656579 | 1_2:-52793786 | Msa0076620:CDS |
| TGGTTCACATCGAAGAAGAG+GGG | 0.668682 | 1_2:-52793842 | Msa0076620:CDS |
| TGTAATCGGTGGAAGACCGT+CGG | 0.672224 | 1_2:+52794112 | None:intergenic |
| CGGTCAAAGACATTGGCCAA+CGG | 0.676344 | 1_2:-52793961 | Msa0076620:CDS |
| GATGGATACAAAATCTGATG+GGG | 0.676395 | 1_2:+52794301 | None:intergenic |
| GTGGCCTTCAACCAATAGGG+AGG | 0.686001 | 1_2:-52794498 | Msa0076620:CDS |
| AGATGATAACAATGACGGGG+AGG | 0.687896 | 1_2:-52794150 | Msa0076620:CDS |
| CCAAATGCAAACGACAACGG+TGG | 0.689102 | 1_2:-52794224 | Msa0076620:CDS |
| TAGAGATGATAACAATGACG+GGG | 0.727768 | 1_2:-52794153 | Msa0076620:CDS |
| AAAATGTATGTGCATCCATG+TGG | 0.777710 | 1_2:-52794517 | Msa0076620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAATTCATGAAATTT+CGG | + | chr1_2:52795737-52795756 | None:intergenic | 10.0% |
| !! | AACAATAATCTAAAAAGATT+GGG | + | chr1_2:52793699-52793718 | None:intergenic | 15.0% |
| !! | AAACAATAATCTAAAAAGAT+TGG | + | chr1_2:52793700-52793719 | None:intergenic | 15.0% |
| !! | TATAAATTTCTATTTAATGG+TGG | + | chr1_2:52794589-52794608 | None:intergenic | 15.0% |
| !! | TGGTATAAATTTCTATTTAA+TGG | + | chr1_2:52794592-52794611 | None:intergenic | 15.0% |
| !! | TGTCTTTATATTTAAAAAGT+TGG | + | chr1_2:52794693-52794712 | None:intergenic | 15.0% |
| !! | TAGTATTTAATGTAATAAGT+TGG | - | chr1_2:52794933-52794952 | Msa0076620:intron | 15.0% |
| !! | AACAAATCAAAAATGAAATT+AGG | + | chr1_2:52795012-52795031 | None:intergenic | 15.0% |
| !! | AATCAATAAATCAATTTCAA+TGG | - | chr1_2:52795043-52795062 | Msa0076620:intron | 15.0% |
| !!! | GAAAGATATGAAATTTTTTA+TGG | - | chr1_2:52795344-52795363 | Msa0076620:intron | 15.0% |
| !! | CAATCTATATAGTTAAGTTT+AGG | + | chr1_2:52793666-52793685 | None:intergenic | 20.0% |
| !! | TTGATGAAATTCAAAATTTC+TGG | - | chr1_2:52794414-52794433 | Msa0076620:CDS | 20.0% |
| !! | TGATGAAATTCAAAATTTCT+GGG | - | chr1_2:52794415-52794434 | Msa0076620:CDS | 20.0% |
| !!! | AAATCTATTATTTTAAGAGG+TGG | + | chr1_2:52794566-52794585 | None:intergenic | 20.0% |
| !!! | TGGAAATCTATTATTTTAAG+AGG | + | chr1_2:52794569-52794588 | None:intergenic | 20.0% |
| !!! | ATTCGCTCATAATTTTTTTT+TGG | - | chr1_2:52794966-52794985 | Msa0076620:intron | 20.0% |
| !! | ATCAGATAATAAGATTTCAA+AGG | + | chr1_2:52795167-52795186 | None:intergenic | 20.0% |
| !! | TTACAACAACATTTAATTGA+TGG | + | chr1_2:52795207-52795226 | None:intergenic | 20.0% |
| !! | GAAAAATAGCAAACTTTAAT+AGG | - | chr1_2:52795366-52795385 | Msa0076620:intron | 20.0% |
| !! | CATGATATATTATTTGTCAT+TGG | - | chr1_2:52795628-52795647 | Msa0076620:intron | 20.0% |
| !!! | ATTGGCAATAACAATATTTT+TGG | - | chr1_2:52795646-52795665 | Msa0076620:intron | 20.0% |
| !!! | GATACAATTTGTATTTTAAG+TGG | - | chr1_2:52797056-52797075 | Msa0076620:intron | 20.0% |
| !!! | ATGTTTTGTGAAATAATTGT+AGG | - | chr1_2:52797108-52797127 | Msa0076620:intron | 20.0% |
| ! | ATAGTTAAGTTTAGGAAGAA+AGG | + | chr1_2:52793658-52793677 | None:intergenic | 25.0% |
| ! | ATCTAAAAAGATTGGGTTAA+GGG | + | chr1_2:52793692-52793711 | None:intergenic | 25.0% |
| ! | AATCTAAAAAGATTGGGTTA+AGG | + | chr1_2:52793693-52793712 | None:intergenic | 25.0% |
| !! | GTTCATTTTCCATATATGTT+TGG | - | chr1_2:52793945-52793964 | Msa0076620:CDS | 25.0% |
| ! | TGAGAAAAACCAAACATATA+TGG | + | chr1_2:52793957-52793976 | None:intergenic | 25.0% |
| !! | TCAATCTTGTTTAGGTTTAT+TGG | - | chr1_2:52793974-52793993 | Msa0076620:CDS | 25.0% |
| ! | ATTTGTGATGTTGTTGTAAT+AGG | - | chr1_2:52794000-52794019 | Msa0076620:CDS | 25.0% |
| ! | TTTGTGATGTTGTTGTAATA+GGG | - | chr1_2:52794001-52794020 | Msa0076620:CDS | 25.0% |
| ! | AATTTCATAAGTACTAGTGT+CGG | + | chr1_2:52794078-52794097 | None:intergenic | 25.0% |
| ! | CTAGTACTTATGAAATTGTT+TGG | - | chr1_2:52794081-52794100 | Msa0076620:CDS | 25.0% |
| ! | AAATTGTTTGGTAGATGTTA+TGG | - | chr1_2:52794093-52794112 | Msa0076620:CDS | 25.0% |
| ! | AGTCAAATTAGATGTAAACT+CGG | + | chr1_2:52794224-52794243 | None:intergenic | 25.0% |
| ! | CACTTAGAATTAAACATTGA+CGG | + | chr1_2:52794893-52794912 | None:intergenic | 25.0% |
| ! | ACATTCAATCAATAACTCTA+AGG | + | chr1_2:52795105-52795124 | None:intergenic | 25.0% |
| !!! | TGCTTACTGAACTTTTTTTT+AGG | - | chr1_2:52795259-52795278 | Msa0076620:intron | 25.0% |
| !!! | GCTTACTGAACTTTTTTTTA+GGG | - | chr1_2:52795260-52795279 | Msa0076620:intron | 25.0% |
| !!! | CTTACTGAACTTTTTTTTAG+GGG | - | chr1_2:52795261-52795280 | Msa0076620:intron | 25.0% |
| !! | ATTGAAACTATGCAAAGTTT+TGG | - | chr1_2:52795754-52795773 | Msa0076620:intron | 25.0% |
| !!! | CATAAAATGTTTTGCTATCA+TGG | + | chr1_2:52795860-52795879 | None:intergenic | 25.0% |
| ! | TTCACACATTAAACGATAAT+GGG | + | chr1_2:52795884-52795903 | None:intergenic | 25.0% |
| ! | TTTCACACATTAAACGATAA+TGG | + | chr1_2:52795885-52795904 | None:intergenic | 25.0% |
| ! | AAAAGTTTAATAGCATCCAT+TGG | - | chr1_2:52796192-52796211 | Msa0076620:intron | 25.0% |
| !! | TTTTCCTCTTATTGTAAACA+AGG | - | chr1_2:52796242-52796261 | Msa0076620:intron | 25.0% |
| ! | ATTTGTATCTCCGTAATATT+CGG | + | chr1_2:52796325-52796344 | None:intergenic | 25.0% |
| ! | TTACTAATATCCAACTAAGA+AGG | + | chr1_2:52796632-52796651 | None:intergenic | 25.0% |
| ! | AAACAAGAAAATAAAGCAAG+CGG | - | chr1_2:52796650-52796669 | Msa0076620:intron | 25.0% |
| !! | GAAATAATTGTAGGATTTTG+AGG | - | chr1_2:52797117-52797136 | Msa0076620:intron | 25.0% |
| TTTCTTTATATTCACGCTTC+TGG | - | chr1_2:52793720-52793739 | Msa0076620:CDS | 30.0% | |
| TTCTTTATATTCACGCTTCT+GGG | - | chr1_2:52793721-52793740 | Msa0076620:CDS | 30.0% | |
| ! | TTGTGTTGTTGATCATTAAG+CGG | - | chr1_2:52793833-52793852 | Msa0076620:CDS | 30.0% |
| ! | TTAAGCGGGTGTTATATTTA+AGG | - | chr1_2:52793848-52793867 | Msa0076620:CDS | 30.0% |
| !! | GGTTTTTCTCAATCTTGTTT+AGG | - | chr1_2:52793966-52793985 | Msa0076620:CDS | 30.0% |
| TATGCTACTAGCATGTATAA+AGG | - | chr1_2:52794027-52794046 | Msa0076620:CDS | 30.0% | |
| ATGCTACTAGCATGTATAAA+GGG | - | chr1_2:52794028-52794047 | Msa0076620:CDS | 30.0% | |
| ACATACATTATGACCATGTT+TGG | + | chr1_2:52794335-52794354 | None:intergenic | 30.0% | |
| ! | ATTTTCTTTAATTCCAGCCA+CGG | - | chr1_2:52794458-52794477 | Msa0076620:CDS | 30.0% |
| !!! | ATGAGCGAAACTCTTTTTTA+TGG | + | chr1_2:52794612-52794631 | None:intergenic | 30.0% |
| TAGAATTAAACATTGACGGA+CGG | + | chr1_2:52794889-52794908 | None:intergenic | 30.0% | |
| CGTCAATGTTTAATTCTAAG+TGG | - | chr1_2:52794891-52794910 | Msa0076620:intron | 30.0% | |
| TACTCAACTTCATACATCAT+GGG | + | chr1_2:52795129-52795148 | None:intergenic | 30.0% | |
| ! | TGAAGTTGAGTACAATGTTT+TGG | - | chr1_2:52795137-52795156 | Msa0076620:intron | 30.0% |
| TATTATCTGATGCCTTTAGT+AGG | - | chr1_2:52795176-52795195 | Msa0076620:intron | 30.0% | |
| ! | AACAACATTTAATTGATGGC+AGG | + | chr1_2:52795203-52795222 | None:intergenic | 30.0% |
| AAACGACACCTAAAAATGAA+CGG | - | chr1_2:52795406-52795425 | Msa0076620:intron | 30.0% | |
| TCACACATTAAACGATAATG+GGG | + | chr1_2:52795883-52795902 | None:intergenic | 30.0% | |
| AATGAGTTCATGCTATCAAT+CGG | + | chr1_2:52796012-52796031 | None:intergenic | 30.0% | |
| !! | TAAACACTCTTCTTTTGAGA+TGG | + | chr1_2:52796121-52796140 | None:intergenic | 30.0% |
| !! | TCTCAAAAGAAGAGTGTTTA+TGG | - | chr1_2:52796121-52796140 | Msa0076620:intron | 30.0% |
| !! | CTCAAAAGAAGAGTGTTTAT+GGG | - | chr1_2:52796122-52796141 | Msa0076620:intron | 30.0% |
| GATAGAGATGATAACAATGA+CGG | - | chr1_2:52796507-52796526 | Msa0076620:intron | 30.0% | |
| ATAGAGATGATAACAATGAC+GGG | - | chr1_2:52796508-52796527 | Msa0076620:intron | 30.0% | |
| ATACATTGAACTACTTGAGA+AGG | + | chr1_2:52796780-52796799 | None:intergenic | 30.0% | |
| AGTGCAAAATGAGTTAAAAG+AGG | - | chr1_2:52797007-52797026 | Msa0076620:intron | 30.0% | |
| ATAGGTGGAGACCATAAAAA+GGG | - | chr1_2:52793526-52793545 | Msa0076620:three_prime_UTR | 35.0% | |
| ! | AGTGAACTCAACCCTTTTTA+TGG | + | chr1_2:52793540-52793559 | None:intergenic | 35.0% |
| ! | CTACTTTGTTTGTCTGATTG+TGG | + | chr1_2:52793620-52793639 | None:intergenic | 35.0% |
| ! | AAGTTTAGGAAGAAAGGTGT+TGG | + | chr1_2:52793652-52793671 | None:intergenic | 35.0% |
| ! | TGCTTCTTATGTTCCTGTTT+TGG | - | chr1_2:52793786-52793805 | Msa0076620:CDS | 35.0% |
| GAAACAGAATAAGCCAAAAC+AGG | + | chr1_2:52793802-52793821 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTGATCATTAAGC+GGG | - | chr1_2:52793834-52793853 | Msa0076620:CDS | 35.0% |
| TCCAAGATAACTTAGCTTAC+AGG | - | chr1_2:52794155-52794174 | Msa0076620:CDS | 35.0% | |
| TCCTGTAAGCTAAGTTATCT+TGG | + | chr1_2:52794159-52794178 | None:intergenic | 35.0% | |
| CAAATTAGATGTAAACTCGG+TGG | + | chr1_2:52794221-52794240 | None:intergenic | 35.0% | |
| TTAAGCTGCTTATCCAAACA+TGG | - | chr1_2:52794319-52794338 | Msa0076620:CDS | 35.0% | |
| ATATAACCAGACGAGTACTA+GGG | + | chr1_2:52794514-52794533 | None:intergenic | 35.0% | |
| AATATAACCAGACGAGTACT+AGG | + | chr1_2:52794515-52794534 | None:intergenic | 35.0% | |
| ! | AGAATTAAACATTGACGGAC+GGG | + | chr1_2:52794888-52794907 | None:intergenic | 35.0% |
| ATTCTAAGTGGTGAGTTTGT+AGG | - | chr1_2:52794903-52794922 | Msa0076620:intron | 35.0% | |
| ! | CAATCAATAACTCTAAGGAG+TGG | + | chr1_2:52795100-52795119 | None:intergenic | 35.0% |
| GTACTCAACTTCATACATCA+TGG | + | chr1_2:52795130-52795149 | None:intergenic | 35.0% | |
| !! | TACTCTCTCCGTTCATTTTT+AGG | + | chr1_2:52795417-52795436 | None:intergenic | 35.0% |
| CATTTATCTTGACTGATCTG+TGG | - | chr1_2:52795591-52795610 | Msa0076620:intron | 35.0% | |
| CAAATGAGTTGCAGACTTAA+AGG | + | chr1_2:52795705-52795724 | None:intergenic | 35.0% | |
| AAGTCTGCAACTCATTTGTT+TGG | - | chr1_2:52795707-52795726 | Msa0076620:intron | 35.0% | |
| !! | GAAACTATGCAAAGTTTTGG+TGG | - | chr1_2:52795757-52795776 | Msa0076620:intron | 35.0% |
| !!! | TCTGTTATTTTTTGACAGCC+AGG | - | chr1_2:52795965-52795984 | Msa0076620:intron | 35.0% |
| GATTGACATAGTAACAATCC+TGG | + | chr1_2:52795986-52796005 | None:intergenic | 35.0% | |
| AAAATGTATGTGCATCCATG+TGG | - | chr1_2:52796145-52796164 | Msa0076620:intron | 35.0% | |
| AGTTTAATAGCATCCATTGG+CGG | - | chr1_2:52796195-52796214 | Msa0076620:intron | 35.0% | |
| TCCTCTTATTGTAAACAAGG+AGG | - | chr1_2:52796245-52796264 | Msa0076620:intron | 35.0% | |
| ! | ACCTCCTTGTTTACAATAAG+AGG | + | chr1_2:52796249-52796268 | None:intergenic | 35.0% |
| CTTATTGTAAACAAGGAGGT+CGG | - | chr1_2:52796249-52796268 | Msa0076620:intron | 35.0% | |
| GATGGATACAAAATCTGATG+GGG | + | chr1_2:52796364-52796383 | None:intergenic | 35.0% | |
| CGATGGATACAAAATCTGAT+GGG | + | chr1_2:52796365-52796384 | None:intergenic | 35.0% | |
| ACGATGGATACAAAATCTGA+TGG | + | chr1_2:52796366-52796385 | None:intergenic | 35.0% | |
| TTGTATCCATCGTAGACATT+AGG | - | chr1_2:52796373-52796392 | Msa0076620:intron | 35.0% | |
| CTTAAACCTAATGTCTACGA+TGG | + | chr1_2:52796382-52796401 | None:intergenic | 35.0% | |
| CATCGTAGACATTAGGTTTA+AGG | - | chr1_2:52796380-52796399 | Msa0076620:intron | 35.0% | |
| TGGAATTCCAGATAGAACTT+TGG | + | chr1_2:52796421-52796440 | None:intergenic | 35.0% | |
| ATTCCAAATGCAAACGACAA+CGG | - | chr1_2:52796435-52796454 | Msa0076620:intron | 35.0% | |
| TAGAGATGATAACAATGACG+GGG | - | chr1_2:52796509-52796528 | Msa0076620:intron | 35.0% | |
| ACCGATTACATCAATGGAAA+GGG | - | chr1_2:52796563-52796582 | Msa0076620:intron | 35.0% | |
| TCCCTTTCCATTGATGTAAT+CGG | + | chr1_2:52796567-52796586 | None:intergenic | 35.0% | |
| TTACATCAATGGAAAGGGAA+AGG | - | chr1_2:52796568-52796587 | Msa0076620:intron | 35.0% | |
| ATGACAAAGTCTTTATCCGT+TGG | + | chr1_2:52796720-52796739 | None:intergenic | 35.0% | |
| AAAGACTTTGTCATCCGATT+CGG | - | chr1_2:52796726-52796745 | Msa0076620:intron | 35.0% | |
| AGAAGATGAGAAGTGAAAGT+AGG | - | chr1_2:52797030-52797049 | Msa0076620:intron | 35.0% | |
| !!! | TTGCTGCTTTTATGACATTC+TGG | - | chr1_2:52797081-52797100 | Msa0076620:intron | 35.0% |
| GATAGGTGGAGACCATAAAA+AGG | - | chr1_2:52793525-52793544 | Msa0076620:three_prime_UTR | 40.0% | |
| AACAGGAACATAAGAAGCAG+AGG | + | chr1_2:52793785-52793804 | None:intergenic | 40.0% | |
| ! | AGATGTAAACTCGGTGGTAA+GGG | + | chr1_2:52794215-52794234 | None:intergenic | 40.0% |
| ! | TAGATGTAAACTCGGTGGTA+AGG | + | chr1_2:52794216-52794235 | None:intergenic | 40.0% |
| TATAACCAGACGAGTACTAG+GGG | + | chr1_2:52794513-52794532 | None:intergenic | 40.0% | |
| ! | AATTAAACATTGACGGACGG+GGG | + | chr1_2:52794886-52794905 | None:intergenic | 40.0% |
| ! | GAATTAAACATTGACGGACG+GGG | + | chr1_2:52794887-52794906 | None:intergenic | 40.0% |
| !! | TGGTATTGACCTTTCAACTC+AGG | - | chr1_2:52795063-52795082 | Msa0076620:intron | 40.0% |
| CATCTTAGATGCACAAGAAC+AGG | - | chr1_2:52795478-52795497 | Msa0076620:intron | 40.0% | |
| ACACATGCATAGCACATTTC+TGG | - | chr1_2:52795537-52795556 | Msa0076620:intron | 40.0% | |
| TCTTGACTGATCTGTGGTAT+TGG | - | chr1_2:52795597-52795616 | Msa0076620:intron | 40.0% | |
| GACATATTACGACGACTTGA+TGG | - | chr1_2:52796051-52796070 | Msa0076620:intron | 40.0% | |
| AAGCTAAACTAGCCAATGCA+GGG | + | chr1_2:52796077-52796096 | None:intergenic | 40.0% | |
| ! | ACTTTTGACATCCTCCCTAT+TGG | + | chr1_2:52796178-52796197 | None:intergenic | 40.0% |
| !!! | GAATTTTCTGAAACCGCCAA+TGG | + | chr1_2:52796211-52796230 | None:intergenic | 40.0% |
| ! | AATCATCAGGGTACTCAAGA+TGG | + | chr1_2:52796293-52796312 | None:intergenic | 40.0% |
| ATCTTGAGTACCCTGATGAT+TGG | - | chr1_2:52796292-52796311 | Msa0076620:intron | 40.0% | |
| TGGACTGAAGCCGAATATTA+CGG | - | chr1_2:52796312-52796331 | Msa0076620:intron | 40.0% | |
| !! | GATAGAACTTTGGAGCAGAT+TGG | + | chr1_2:52796411-52796430 | None:intergenic | 40.0% |
| ATCTGCTCCAAAGTTCTATC+TGG | - | chr1_2:52796411-52796430 | Msa0076620:intron | 40.0% | |
| GTGAGAAGATCGATACGAAA+AGG | + | chr1_2:52796480-52796499 | None:intergenic | 40.0% | |
| ! | TCTTCCACCGATTACATCAA+TGG | - | chr1_2:52796557-52796576 | Msa0076620:intron | 40.0% |
| CTTTCCATTGATGTAATCGG+TGG | + | chr1_2:52796564-52796583 | None:intergenic | 40.0% | |
| ! | CACCGATTACATCAATGGAA+AGG | - | chr1_2:52796562-52796581 | Msa0076620:intron | 40.0% |
| ATGGAAAGGGAAAGGAAAGA+CGG | - | chr1_2:52796576-52796595 | Msa0076620:intron | 40.0% | |
| AAAGGAAAGACGGGAAACTA+TGG | - | chr1_2:52796586-52796605 | Msa0076620:intron | 40.0% | |
| GAAGGAAGAATGTCTTTAGC+CGG | + | chr1_2:52796762-52796781 | None:intergenic | 40.0% | |
| CCACTCTAAACTTCATAGCA+AGG | + | chr1_2:52796803-52796822 | None:intergenic | 40.0% | |
| ! | CCTTGCTATGAAGTTTAGAG+TGG | - | chr1_2:52796800-52796819 | Msa0076620:intron | 40.0% |
| AACAGAACTTAGCATGCAGT+TGG | - | chr1_2:52796863-52796882 | Msa0076620:intron | 40.0% | |
| !! | ATGGAAGGTGCTCATGTTAA+TGG | - | chr1_2:52796891-52796910 | Msa0076620:intron | 40.0% |
| GATGAGAAGTGAAAGTAGGT+TGG | - | chr1_2:52797034-52797053 | Msa0076620:intron | 40.0% | |
| AGACACGAATCATGAACACG+AGG | + | chr1_2:52793582-52793601 | None:intergenic | 45.0% | |
| TCTGGGAAACTGAAAGTCAG+TGG | - | chr1_2:52794432-52794451 | Msa0076620:CDS | 45.0% | |
| TTAATTCCAGCCACGGATCT+AGG | - | chr1_2:52794465-52794484 | Msa0076620:CDS | 45.0% | |
| !! | GGATCTAGGCATAGTGGATT+GGG | - | chr1_2:52794479-52794498 | Msa0076620:CDS | 45.0% |
| !! | GATCTAGGCATAGTGGATTG+GGG | - | chr1_2:52794480-52794499 | Msa0076620:CDS | 45.0% |
| !! | ATCTAGGCATAGTGGATTGG+GGG | - | chr1_2:52794481-52794500 | Msa0076620:CDS | 45.0% |
| ATTGACCTTTCAACTCAGGC+AGG | - | chr1_2:52795067-52795086 | Msa0076620:intron | 45.0% | |
| ! | TAACTCTAAGGAGTGGCCTA+GGG | + | chr1_2:52795093-52795112 | None:intergenic | 45.0% |
| ! | ATAACTCTAAGGAGTGGCCT+AGG | + | chr1_2:52795094-52795113 | None:intergenic | 45.0% |
| ! | TTGATGGCAGGTCCTACTAA+AGG | + | chr1_2:52795191-52795210 | None:intergenic | 45.0% |
| CAAGCTAAACTAGCCAATGC+AGG | + | chr1_2:52796078-52796097 | None:intergenic | 45.0% | |
| CATGTGGCCTTCAACCAATA+GGG | - | chr1_2:52796161-52796180 | Msa0076620:intron | 45.0% | |
| ! | ACATCCTCCCTATTGGTTGA+AGG | + | chr1_2:52796171-52796190 | None:intergenic | 45.0% |
| ! | AGATGATAACAATGACGGGG+AGG | - | chr1_2:52796512-52796531 | Msa0076620:intron | 45.0% |
| TGGAAAGGGAAAGGAAAGAC+GGG | - | chr1_2:52796577-52796596 | Msa0076620:intron | 45.0% | |
| CAATGTCTTTGACCGTCAAG+AGG | + | chr1_2:52796696-52796715 | None:intergenic | 45.0% | |
| CTCTTGACGGTCAAAGACAT+TGG | - | chr1_2:52796694-52796713 | Msa0076620:intron | 45.0% | |
| !! | CTTTGTCATCCGATTCGGAT+CGG | - | chr1_2:52796731-52796750 | Msa0076620:intron | 45.0% |
| AGTGGTTCACATCGAAGAAG+AGG | - | chr1_2:52796818-52796837 | Msa0076620:intron | 45.0% | |
| GTGGTTCACATCGAAGAAGA+GGG | - | chr1_2:52796819-52796838 | Msa0076620:intron | 45.0% | |
| TGGTTCACATCGAAGAAGAG+GGG | - | chr1_2:52796820-52796839 | Msa0076620:intron | 45.0% | |
| TAGCATGCAGTTGGAAGACA+TGG | - | chr1_2:52796872-52796891 | Msa0076620:intron | 45.0% | |
| ATGCAGTTGGAAGACATGGA+AGG | - | chr1_2:52796876-52796895 | Msa0076620:intron | 45.0% | |
| !! | AAGAAGCACTTAGCTGCAGA+AGG | - | chr1_2:52796937-52796956 | Msa0076620:intron | 45.0% |
| !!! | TAATTTTTCTAATATATAAT+AGG | - | chr1_2:52794753-52794772 | Msa0076620:intron | 5.0% |
| ATCCACTATGCCTAGATCCG+TGG | + | chr1_2:52794478-52794497 | None:intergenic | 50.0% | |
| !! | CGGATCTAGGCATAGTGGAT+TGG | - | chr1_2:52794478-52794497 | Msa0076620:CDS | 50.0% |
| TTGCTCGTGTGAGTCCTTGA+GGG | - | chr1_2:52795795-52795814 | Msa0076620:intron | 50.0% | |
| ! | CCTATTGGTTGAAGGCCACA+TGG | + | chr1_2:52796163-52796182 | None:intergenic | 50.0% |
| CCATGTGGCCTTCAACCAAT+AGG | - | chr1_2:52796160-52796179 | Msa0076620:intron | 50.0% | |
| CGGCTTCAGTCCAATCATCA+GGG | + | chr1_2:52796305-52796324 | None:intergenic | 50.0% | |
| TCGGCTTCAGTCCAATCATC+AGG | + | chr1_2:52796306-52796325 | None:intergenic | 50.0% | |
| ! | CCACCGTTGTCGTTTGCATT+TGG | + | chr1_2:52796441-52796460 | None:intergenic | 50.0% |
| CCAAATGCAAACGACAACGG+TGG | - | chr1_2:52796438-52796457 | Msa0076620:intron | 50.0% | |
| ATGCAAACGACAACGGTGGT+TGG | - | chr1_2:52796442-52796461 | Msa0076620:intron | 50.0% | |
| AAGACCGTCGGAGACAGAAA+GGG | + | chr1_2:52796541-52796560 | None:intergenic | 50.0% | |
| TGTAATCGGTGGAAGACCGT+CGG | + | chr1_2:52796553-52796572 | None:intergenic | 50.0% | |
| GTGACGGTCTCCTTCTTAGT+TGG | - | chr1_2:52796619-52796638 | Msa0076620:intron | 50.0% | |
| AAGCGGCTAATCTTGCTAGC+TGG | - | chr1_2:52796667-52796686 | Msa0076620:intron | 50.0% | |
| CGGTCAAAGACATTGGCCAA+CGG | - | chr1_2:52796701-52796720 | Msa0076620:intron | 50.0% | |
| ACTATGCCTAGATCCGTGGC+TGG | + | chr1_2:52794474-52794493 | None:intergenic | 55.0% | |
| AGCCACGGATCTAGGCATAG+TGG | - | chr1_2:52794473-52794492 | Msa0076620:CDS | 55.0% | |
| AACTGCCCCTAGTACTCGTC+TGG | - | chr1_2:52794505-52794524 | Msa0076620:CDS | 55.0% | |
| ! | TAGGGCCTGCCTGAGTTGAA+AGG | + | chr1_2:52795075-52795094 | None:intergenic | 55.0% |
| TTTCAACTCAGGCAGGCCCT+AGG | - | chr1_2:52795074-52795093 | Msa0076620:intron | 55.0% | |
| CTTGCTCGTGTGAGTCCTTG+AGG | - | chr1_2:52795794-52795813 | Msa0076620:intron | 55.0% | |
| AGTCCTTGAGGGCTCTGTTC+TGG | - | chr1_2:52795806-52795825 | Msa0076620:intron | 55.0% | |
| ! | ACGACTTGATGGCCCTGCAT+TGG | - | chr1_2:52796062-52796081 | Msa0076620:intron | 55.0% |
| GTGGCCTTCAACCAATAGGG+AGG | - | chr1_2:52796164-52796183 | Msa0076620:intron | 55.0% | |
| !! | AGGAGGTCGGAGAGTATCAG+TGG | - | chr1_2:52796262-52796281 | Msa0076620:intron | 55.0% |
| GTGACCCTTTCTGTCTCCGA+CGG | - | chr1_2:52796534-52796553 | Msa0076620:intron | 55.0% | |
| GAAGACCGTCGGAGACAGAA+AGG | + | chr1_2:52796542-52796561 | None:intergenic | 55.0% | |
| CTATGGCACGAGCTTCGTGA+CGG | - | chr1_2:52796603-52796622 | Msa0076620:intron | 55.0% | |
| GCTAGCTGGAGTCCTCTTGA+CGG | - | chr1_2:52796681-52796700 | Msa0076620:intron | 55.0% | |
| CCGGTAGAACCGATCCGAAT+CGG | + | chr1_2:52796743-52796762 | None:intergenic | 55.0% | |
| !! | CCGATTCGGATCGGTTCTAC+CGG | - | chr1_2:52796740-52796759 | Msa0076620:intron | 55.0% |
| GCGCCAGAACAGAGCCCTCA+AGG | + | chr1_2:52795812-52795831 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52793523 | 52797161 | 52793523 | ID=Msa0076620;Name=Msa0076620 |
| chr1_2 | mRNA | 52793523 | 52797161 | 52793523 | ID=Msa0076620-mRNA-1;Parent=Msa0076620;Name=Msa0076620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0.5|0.5|0|0.5|2|43|380 |
| chr1_2 | exon | 52793523 | 52794701 | 52793523 | ID=Msa0076620-mRNA-1:exon:16313;Parent=Msa0076620-mRNA-1 |
| chr1_2 | exon | 52797155 | 52797161 | 52797155 | ID=Msa0076620-mRNA-1:exon:16312;Parent=Msa0076620-mRNA-1 |
| chr1_2 | CDS | 52797155 | 52797161 | 52797155 | ID=Msa0076620-mRNA-1:cds;Parent=Msa0076620-mRNA-1 |
| chr1_2 | CDS | 52793566 | 52794701 | 52793566 | ID=Msa0076620-mRNA-1:cds;Parent=Msa0076620-mRNA-1 |
| chr1_2 | three_prime_UTR | 52793523 | 52793565 | 52793523 | ID=Msa0076620-mRNA-1:three_prime_utr;Parent=Msa0076620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
